Query psy13880
Match_columns 256
No_of_seqs 186 out of 525
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:46:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 7.1E-42 2.4E-46 354.5 22.0 183 63-251 964-1156(1158)
2 1dul_A Signal recognition part 72.2 6 0.00021 27.1 4.6 27 224-250 34-60 (69)
3 1hq1_A Signal recognition part 63.0 10 0.00035 28.1 4.6 27 224-250 68-94 (105)
4 2jqe_A SRP54, signal recogniti 58.4 13 0.00045 28.1 4.5 28 224-251 77-104 (119)
5 1xn7_A Hypothetical protein YH 58.0 10 0.00034 26.4 3.6 28 224-251 15-42 (78)
6 1x2m_A LAG1 longevity assuranc 54.7 18 0.00061 24.2 4.3 33 211-243 9-46 (64)
7 2k02_A Ferrous iron transport 51.5 14 0.00048 26.3 3.5 28 224-251 15-42 (87)
8 1qb2_A SRP54, human signal rec 51.3 15 0.00053 27.3 3.8 27 224-250 74-100 (109)
9 2jt1_A PEFI protein; solution 48.2 18 0.00062 25.0 3.6 25 227-251 26-50 (77)
10 1mfq_C SRP54, signal recogniti 47.0 15 0.00053 28.1 3.3 27 224-250 87-113 (129)
11 2heo_A Z-DNA binding protein 1 45.2 22 0.00076 23.4 3.6 37 215-251 14-51 (67)
12 2w7n_A TRFB transcriptional re 42.2 26 0.00088 25.6 3.8 27 226-252 35-61 (101)
13 1qgp_A Protein (double strande 41.9 12 0.00042 25.6 1.9 39 213-251 16-57 (77)
14 1yfq_A Cell cycle arrest prote 41.7 1.4E+02 0.0048 24.2 10.7 76 67-163 10-86 (342)
15 1du6_A PBX1, homeobox protein 41.3 37 0.0013 21.9 4.2 30 215-244 16-52 (64)
16 3k2a_A Homeobox protein MEIS2; 39.4 38 0.0013 22.3 4.1 22 223-244 26-47 (67)
17 2hin_A GP39, repressor protein 37.9 33 0.0011 23.2 3.6 28 215-247 5-32 (71)
18 1puf_B PRE-B-cell leukemia tra 37.6 44 0.0015 22.2 4.2 30 215-244 14-50 (73)
19 4e54_B DNA damage-binding prot 37.6 2E+02 0.0069 24.9 10.6 34 65-100 206-239 (435)
20 1qbj_A Protein (double-strande 37.4 15 0.00052 25.6 1.8 39 213-251 12-53 (81)
21 2htj_A P fimbrial regulatory p 35.9 29 0.00098 23.4 3.1 27 225-251 14-40 (81)
22 1uxc_A FRUR (1-57), fructose r 35.7 32 0.0011 22.7 3.2 21 228-248 3-23 (65)
23 2cqx_A LAG1 longevity assuranc 35.4 46 0.0016 22.3 4.0 30 214-243 20-54 (72)
24 1b72_B Protein (PBX1); homeodo 34.6 50 0.0017 22.7 4.2 30 215-244 14-50 (87)
25 3ryp_A Catabolite gene activat 34.4 34 0.0012 26.6 3.7 24 228-251 170-193 (210)
26 2oz6_A Virulence factor regula 34.0 34 0.0012 26.5 3.7 24 228-251 167-190 (207)
27 2zcw_A TTHA1359, transcription 33.5 36 0.0012 26.5 3.7 24 228-251 149-172 (202)
28 2cfx_A HTH-type transcriptiona 32.7 25 0.00086 26.5 2.5 39 213-251 7-45 (144)
29 3dv8_A Transcriptional regulat 32.6 38 0.0013 26.6 3.7 25 227-251 171-195 (220)
30 3b02_A Transcriptional regulat 32.6 33 0.0011 26.6 3.4 24 228-251 142-165 (195)
31 1x2n_A Homeobox protein pknox1 32.3 62 0.0021 21.4 4.3 23 222-244 34-56 (73)
32 1sfu_A 34L protein; protein/Z- 32.3 50 0.0017 22.8 3.7 32 221-252 22-56 (75)
33 1xmk_A Double-stranded RNA-spe 31.9 21 0.00071 24.9 1.7 36 216-251 16-52 (79)
34 1nd9_A Translation initiation 31.9 41 0.0014 20.2 3.0 21 229-249 6-26 (49)
35 3iwz_A CAP-like, catabolite ac 31.9 39 0.0013 26.7 3.7 25 227-251 189-213 (230)
36 3e97_A Transcriptional regulat 31.8 39 0.0013 26.9 3.7 25 227-251 177-201 (231)
37 4ev0_A Transcription regulator 31.5 40 0.0014 26.4 3.7 24 228-251 166-189 (216)
38 1ft9_A Carbon monoxide oxidati 31.4 40 0.0014 26.7 3.7 24 228-251 166-189 (222)
39 2fmy_A COOA, carbon monoxide o 31.0 40 0.0014 26.6 3.7 24 228-251 170-193 (220)
40 1rzs_A Antirepressor, regulato 30.7 36 0.0012 21.8 2.7 25 215-244 5-29 (61)
41 3gre_A Serine/threonine-protei 30.6 1.1E+02 0.0036 26.4 6.7 76 67-161 62-138 (437)
42 3d0s_A Transcriptional regulat 30.0 43 0.0015 26.5 3.7 24 228-251 180-203 (227)
43 2e1c_A Putative HTH-type trans 29.8 32 0.0011 27.1 2.8 41 212-252 28-68 (171)
44 2cg4_A Regulatory protein ASNC 29.7 33 0.0011 26.0 2.8 40 212-251 9-48 (152)
45 3la7_A Global nitrogen regulat 29.4 45 0.0015 27.0 3.7 25 227-251 195-219 (243)
46 4e54_B DNA damage-binding prot 29.3 1.7E+02 0.0059 25.3 7.9 32 68-100 119-150 (435)
47 1zyb_A Transcription regulator 29.2 45 0.0015 26.7 3.7 24 228-251 189-212 (232)
48 2dbb_A Putative HTH-type trans 28.9 34 0.0012 25.8 2.8 39 213-251 11-49 (151)
49 3dkw_A DNR protein; CRP-FNR, H 28.4 39 0.0014 26.6 3.2 25 227-251 180-204 (227)
50 1oyi_A Double-stranded RNA-bin 28.4 54 0.0018 23.0 3.4 26 226-251 31-56 (82)
51 2gau_A Transcriptional regulat 28.4 48 0.0016 26.3 3.7 25 227-251 182-206 (232)
52 1jhg_A Trp operon repressor; c 28.0 39 0.0013 24.7 2.7 19 226-244 59-77 (101)
53 1tc3_C Protein (TC3 transposas 27.7 59 0.002 18.6 3.2 22 228-249 24-45 (51)
54 2ia0_A Putative HTH-type trans 27.2 38 0.0013 26.6 2.8 41 211-251 17-57 (171)
55 3e6c_C CPRK, cyclic nucleotide 27.1 52 0.0018 26.6 3.7 25 227-251 179-203 (250)
56 1i1g_A Transcriptional regulat 27.1 39 0.0013 25.0 2.7 39 213-251 6-44 (141)
57 3nau_A Zinc fingers and homeob 26.6 60 0.0021 21.8 3.3 22 223-244 29-50 (66)
58 3fx3_A Cyclic nucleotide-bindi 26.5 45 0.0016 26.6 3.2 24 228-251 181-204 (237)
59 2w25_A Probable transcriptiona 26.5 40 0.0014 25.4 2.8 39 213-251 9-47 (150)
60 3kcc_A Catabolite gene activat 26.5 53 0.0018 26.9 3.7 24 228-251 220-243 (260)
61 3e7l_A Transcriptional regulat 26.5 41 0.0014 21.7 2.4 35 215-249 22-56 (63)
62 3a03_A T-cell leukemia homeobo 26.2 62 0.0021 20.2 3.2 21 223-243 22-42 (56)
63 1k8b_A EIF-2-beta, probable tr 26.2 33 0.0011 21.9 1.8 24 229-252 15-39 (52)
64 2e19_A Transcription factor 8; 26.1 97 0.0033 20.1 4.3 30 215-244 16-49 (64)
65 1z67_A Hypothetical protein S4 26.1 1.2E+02 0.004 23.3 5.3 37 211-249 63-99 (135)
66 2p5k_A Arginine repressor; DNA 25.9 71 0.0024 20.0 3.5 24 227-250 21-49 (64)
67 2cyy_A Putative HTH-type trans 25.4 44 0.0015 25.3 2.8 39 213-251 9-47 (151)
68 2x48_A CAG38821; archeal virus 25.3 60 0.002 19.7 3.0 20 227-246 33-52 (55)
69 1j5y_A Transcriptional regulat 25.2 57 0.0019 25.8 3.5 26 227-252 38-63 (187)
70 2xvc_A ESCRT-III, SSO0910; cel 24.9 85 0.0029 20.6 3.6 23 229-251 29-51 (59)
71 2p5v_A Transcriptional regulat 24.8 45 0.0015 25.6 2.8 40 212-251 11-50 (162)
72 3lhr_A Zinc finger protein 24; 24.8 1.2E+02 0.004 21.7 4.8 45 208-252 45-90 (93)
73 3odt_A Protein DOA1; ubiquitin 24.7 2.6E+02 0.0088 22.1 10.7 31 67-100 17-47 (313)
74 1ig7_A Homeotic protein MSX-1; 24.6 69 0.0024 20.0 3.2 21 223-243 25-45 (58)
75 3gre_A Serine/threonine-protei 24.5 3.1E+02 0.01 23.3 8.6 31 68-100 111-141 (437)
76 2jpc_A SSRB; DNA binding prote 24.3 80 0.0028 19.4 3.5 24 228-251 16-39 (61)
77 2dmn_A Homeobox protein TGIF2L 23.2 1E+02 0.0034 21.1 4.1 24 221-244 33-56 (83)
78 3i2n_A WD repeat-containing pr 23.1 3E+02 0.01 22.2 9.0 34 67-100 17-52 (357)
79 1akh_A Protein (mating-type pr 22.8 76 0.0026 20.0 3.2 22 223-244 30-51 (61)
80 1fse_A GERE; helix-turn-helix 22.7 91 0.0031 19.9 3.7 25 227-251 28-52 (74)
81 2o8x_A Probable RNA polymerase 22.6 93 0.0032 19.6 3.7 24 227-250 33-56 (70)
82 1g2h_A Transcriptional regulat 22.2 45 0.0015 21.4 1.9 35 214-249 23-57 (61)
83 3dw8_B Serine/threonine-protei 22.1 3.6E+02 0.012 22.7 10.0 33 68-102 28-60 (447)
84 3rkq_A Homeobox protein NKX-2. 21.8 84 0.0029 19.4 3.2 21 223-243 27-47 (58)
85 2bgc_A PRFA; bacterial infecti 21.8 57 0.002 26.2 3.0 26 226-251 170-196 (238)
86 2lk2_A Homeobox protein TGIF1; 21.5 1.9E+02 0.0065 20.4 5.3 23 223-245 33-55 (89)
87 2h1k_A IPF-1, pancreatic and d 21.4 85 0.0029 20.0 3.2 21 223-243 28-48 (63)
88 1jgg_A Segmentation protein EV 21.4 84 0.0029 19.8 3.2 21 223-243 26-46 (60)
89 4gqb_B Methylosome protein 50; 21.4 3.7E+02 0.013 22.6 9.9 28 70-100 84-111 (344)
90 1k61_A Mating-type protein alp 21.3 88 0.003 19.7 3.3 22 223-244 26-47 (60)
91 1je8_A Nitrate/nitrite respons 21.2 1E+02 0.0034 20.7 3.7 26 226-251 37-62 (82)
92 3keo_A Redox-sensing transcrip 21.0 61 0.0021 26.7 3.0 22 228-249 35-56 (212)
93 2hdd_A Protein (engrailed home 21.0 89 0.003 19.8 3.2 21 223-243 28-48 (61)
94 2vi6_A Homeobox protein nanog; 20.8 89 0.0031 19.8 3.2 21 223-243 28-48 (62)
95 1umq_A Photosynthetic apparatu 20.6 53 0.0018 22.8 2.1 36 214-249 43-78 (81)
96 3twe_A Alpha4H; unknown functi 20.4 91 0.0031 16.6 2.5 17 166-182 4-20 (27)
97 2ecc_A Homeobox and leucine zi 20.4 90 0.0031 21.4 3.3 23 223-245 28-50 (76)
98 3a02_A Homeobox protein arista 20.1 93 0.0032 19.6 3.2 21 223-243 24-44 (60)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=7.1e-42 Score=354.53 Aligned_cols=183 Identities=20% Similarity=0.331 Sum_probs=163.8
Q ss_pred CCCCCccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeCCCccCCCCCCeeeeeeccccCcccceEeeeecCCCCCCCCCC
Q psy13880 63 EQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPG 142 (256)
Q Consensus 63 ~~d~~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~p~~~~s~~g~kL~~~~~fhlG~~v~~~~~~~~~~~~~~~~~~ 142 (256)
+||+.|+||||++||+++ +++++|++|||++++|+|+++++++|+||+++++||+|+.||+|+++++.+....+ ..
T Consensus 964 a~D~~~~~vta~~~ld~~---t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~-~~ 1039 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE-TS 1039 (1158)
T ss_dssp EECCSCBCEEEEEEEETT---EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------
T ss_pred EeecccccEEEEEEEccC---cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc-cc
Confidence 357899999999999998 89999999999999999999999999999999999999999999998877432111 11
Q ss_pred CCCcceEEEEeCCcceEEEEecChhhHHHHHHHHHHHHhcCCCCCCCCccccccccCCCccCCCCCCceeehHHHHHHhc
Q psy13880 143 ARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQ 222 (256)
Q Consensus 143 ~~~~~~ll~~T~~GsIg~l~pl~~~~~~~L~~LQ~~l~~~~~~~~Gl~~~~~R~~~~~~~~~~~~~k~~IDGDLle~Fl~ 222 (256)
...++.++|||++|+||+|+|++++.|+||+.||++|++.++++||+||++||+|+++.+. .|+||||||||||+|++
T Consensus 1040 ~~~~~~il~~T~~GsIg~l~pl~~~~~~~L~~Lq~~l~~~~~~~~gl~~~~~Rs~~~~~~~--~~~~~~iDGdLle~fl~ 1117 (1158)
T 3ei3_A 1040 TPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKT--EPATGFIDGDLIESFLD 1117 (1158)
T ss_dssp -CEEEEEEEEETTSCEEEEEEECHHHHHHHHHHHHHHHHHSCCTTSCCHHHHHSEECSSCE--ECCBSEEEHHHHHGGGG
T ss_pred ccccceEEEEecCCEEEEEEEcCHHHHHHHHHHHHHHHhhCCCCcCCCHHHhhCeeccccc--CCCCccCcHHHHHHHHc
Confidence 2356889999999999999999999999999999999999999999999999999987543 58899999999999999
Q ss_pred CCHHHHHHHHHHhC----------CCHHHHHHHHHHHhh
Q psy13880 223 LSLGERLEICKKIG----------SKHNDILDELYDIEA 251 (256)
Q Consensus 223 L~~~~q~~ia~~lg----------~s~~ei~~~l~~i~~ 251 (256)
|+.++|++||+++| +|++||.|+|+||++
T Consensus 1118 L~~~~q~~ia~~l~~~~~~~~~~~~t~~ei~k~~e~l~r 1156 (1158)
T 3ei3_A 1118 ISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTR 1156 (1158)
T ss_dssp SCHHHHHHHCCCC------------CCHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHhhCccccccccCCCCHHHHHHHHHHHhh
Confidence 99999999999997 599999999999986
No 2
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=72.18 E-value=6 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
..++++.||++.|++++||-+.|....
T Consensus 34 ~~SR~~RIA~GSG~~v~eVn~Llkqf~ 60 (69)
T 1dul_A 34 KGSRKRRIAAGSGMQVQDVNRLLKQFD 60 (69)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 467899999999999999988877654
No 3
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=63.03 E-value=10 Score=28.06 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
..++++.||+..|++++||-+.|....
T Consensus 68 ~~SR~~RIA~GSG~~v~eVn~LLkqf~ 94 (105)
T 1hq1_A 68 KGSRKRRIAAGSGMQVQDVNRLLKQFD 94 (105)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 568999999999999999988877654
No 4
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=58.38 E-value=13 Score=28.12 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
..++++.||+..|++++||-+.|.....
T Consensus 77 ~~SR~~RIA~GSG~~v~eVn~LLkqf~~ 104 (119)
T 2jqe_A 77 DSSRIRRIAIGSGTSPQEVKELLNYYKT 104 (119)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999888776543
No 5
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=57.97 E-value=10 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
..-.-.++|+.+++|+..|.+||..+..
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3334578999999999999999999864
No 6
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=54.75 E-value=18 Score=24.19 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=26.3
Q ss_pred eeehHHHHHHh-----cCCHHHHHHHHHHhCCCHHHHH
Q psy13880 211 IIDGSLVWKFL-----QLSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 211 ~IDGDLle~Fl-----~L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.-.-..||.++ .++..++.+||+++|.+..+|-
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 33466788777 3788899999999999998774
No 7
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=51.48 E-value=14 Score=26.30 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
..-.-.++|+.+++|...|.+||..+..
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3334578999999999999999999864
No 8
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=51.31 E-value=15 Score=27.26 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
+.++++.||+..|++++||-+.|....
T Consensus 74 ~~SR~~RIA~GSG~~v~eVn~LLkqf~ 100 (109)
T 1qb2_A 74 QPGRIQRVARGSGVSTRDVQELLTQYT 100 (109)
T ss_dssp STHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred chHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 367899999999999999988887654
No 9
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=48.23 E-value=18 Score=24.96 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.-.+||+.+|.|+..|.++|..|..
T Consensus 26 sv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 26 KTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999865
No 10
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=46.97 E-value=15 Score=28.14 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
+.++++.||+..|++++||-+.|....
T Consensus 87 ~~SRk~RIA~GSG~~v~eVn~LLkqf~ 113 (129)
T 1mfq_C 87 QPGRIQRVARGSGVSTRDVQELLTQYT 113 (129)
T ss_dssp CTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 468899999999999999988877654
No 11
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=45.17 E-value=22 Score=23.45 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHhcC-CHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 215 SLVWKFLQL-SLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 215 DLle~Fl~L-~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.+|+.+..= .+-.-.+||+.+|.+...|.+.|..++.
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455555431 1123578999999999999999998865
No 12
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=42.17 E-value=26 Score=25.63 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 226 GERLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 226 ~~q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
-.|.+||+++|.|...|.+.|...+..
T Consensus 35 ~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 35 KPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 349999999999999998888776543
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=41.86 E-value=12 Score=25.63 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=29.3
Q ss_pred ehHHHHHHhcCC---HHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLS---LGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~---~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.+|+-....+ .-...+||+++|.+...|.+.|..|..
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344555455556 567799999999999999888888754
No 14
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=41.71 E-value=1.4e+02 Score=24.23 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=47.6
Q ss_pred CccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeCCCccCCCCCCeeeeeeccccCcccceEeeeecCCCCCCCCCCCCCc
Q psy13880 67 LPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARSR 146 (256)
Q Consensus 67 ~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~p~~~~s~~g~kL~~~~~fhlG~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (256)
+.-.|+++.|-.+++ .++++..++.+.++..+...+ .......+.....|+++.-. | ..
T Consensus 10 h~~~v~~~~~s~~~~--~l~~~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~~v~~~~~~---~----------~~ 68 (342)
T 1yfq_A 10 PKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAK------NVDLLQSLRYKHPLLCCNFI---D----------NT 68 (342)
T ss_dssp CSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTT------EEEEEEEEECSSCEEEEEEE---E----------SS
T ss_pred CCCcEEEEEEcCCCC--EEEEEcCCCeEEEEEeCCCCc------cccceeeeecCCceEEEEEC---C----------CC
Confidence 456899999988776 578889999999999864321 12222233444555554321 1 12
Q ss_pred c-eEEEEeCCcceEEEEe
Q psy13880 147 F-LTWYASLDGALGFFLP 163 (256)
Q Consensus 147 ~-~ll~~T~~GsIg~l~p 163 (256)
. .++.|+.+|.|-+.-.
T Consensus 69 ~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SEEEEEEETTSCEEEECS
T ss_pred CcEEEEEcCCCeEEEEEe
Confidence 3 5777778887776643
No 15
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=41.33 E-value=37 Score=21.85 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHh-------cCCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFL-------QLSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl-------~L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
..||.++ ..+.+++.++|.++|.+..+|-.
T Consensus 16 ~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 16 EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 4566665 46889999999999999988754
No 16
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=39.37 E-value=38 Score=22.33 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+..++.++|.++|.+..+|-.
T Consensus 26 p~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 26 PSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHhhh
Confidence 6899999999999999988753
No 17
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=37.94 E-value=33 Score=23.24 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHH
Q psy13880 215 SLVWKFLQLSLGERLEICKKIGSKHNDILDELY 247 (256)
Q Consensus 215 DLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~ 247 (256)
++++.|-. |.++|+.+|+|+..|.+=+.
T Consensus 5 ~ai~~~G~-----~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 5 ELVRHFGD-----VEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp HHHHHHSS-----HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHCC-----HHHHHHHHCCCHHHHHHHHh
Confidence 55666654 89999999999998876544
No 18
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=37.61 E-value=44 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=23.9
Q ss_pred HHHHHHh-------cCCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFL-------QLSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl-------~L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
..||.++ ..+..++.++|.++|.+..+|-.
T Consensus 14 ~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 14 EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 4566666 47899999999999999887743
No 19
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=37.56 E-value=2e+02 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=26.2
Q ss_pred CCCccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeC
Q psy13880 65 PGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQ 100 (256)
Q Consensus 65 d~~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~ 100 (256)
+....|++++.|-.++. .+++++.+|.+.++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 206 DTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD 239 (435)
T ss_dssp SSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS
T ss_pred CCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC
Confidence 35566788888876665 67888999999998764
No 20
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.38 E-value=15 Score=25.57 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=29.2
Q ss_pred ehHHHHHHhcCC---HHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLS---LGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~---~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.+|+-....+ .-...+||+++|++...|.+.|..|..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444555555555 556789999999999999988888854
No 21
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=35.87 E-value=29 Score=23.44 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 225 LGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 225 ~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.-...+||+.+|.+...+.+.|..+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345789999999999999988888764
No 22
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=35.69 E-value=32 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q psy13880 228 RLEICKKIGSKHNDILDELYD 248 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~ 248 (256)
+++||+.+|+|+..|.+-|..
T Consensus 3 ~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 689999999998888877753
No 23
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.37 E-value=46 Score=22.34 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=23.6
Q ss_pred hHHHHHHh-----cCCHHHHHHHHHHhCCCHHHHH
Q psy13880 214 GSLVWKFL-----QLSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 214 GDLle~Fl-----~L~~~~q~~ia~~lg~s~~ei~ 243 (256)
-+.||.++ ..+..++.++|+++|.+..+|-
T Consensus 20 l~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 20 NDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp TTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 34566666 4788999999999999988763
No 24
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=34.56 E-value=50 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHh-------cCCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFL-------QLSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl-------~L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
..||.++ ..+..++.++|+++|.+..+|-.
T Consensus 14 ~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 14 EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp HHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 4566666 47899999999999999887743
No 25
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=34.44 E-value=34 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 170 ~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 170 RQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 789999999999999999988865
No 26
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=33.95 E-value=34 Score=26.54 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 167 ~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 167 RQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 889999999999999999888864
No 27
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=33.55 E-value=36 Score=26.53 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 149 ~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 149 HDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 28
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=32.67 E-value=25 Score=26.53 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=29.2
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.+|+....-++-...+||+++|.|...+.+.|..+..
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344555554445566789999999999999988888754
No 29
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=32.63 E-value=38 Score=26.60 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|+|++.+.+.|.+++.
T Consensus 171 t~~~lA~~lg~sr~tvsR~l~~L~~ 195 (220)
T 3dv8_A 171 THETIANHLGSHREVITRMLRYFQV 195 (220)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3799999999999999999988864
No 30
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=32.58 E-value=33 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+.+|+|++.+.+-|.+++.
T Consensus 142 ~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 142 HEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 789999999999999999888864
No 31
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.27 E-value=62 Score=21.38 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHhCCCHHHHHH
Q psy13880 222 QLSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 222 ~L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
..+.+++.++|.++|.+..+|-.
T Consensus 34 yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 34 YPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHHH
Confidence 37899999999999999987753
No 32
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=32.27 E-value=50 Score=22.82 Aligned_cols=32 Identities=16% Similarity=0.413 Sum_probs=25.7
Q ss_pred hcCCHHH---HHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 221 LQLSLGE---RLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 221 l~L~~~~---q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
..|++.+ -.+||+++|++-.+|-+-|..|...
T Consensus 22 ~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 22 LSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE 56 (75)
T ss_dssp HTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4566555 7899999999999999988887653
No 33
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.89 E-value=21 Score=24.88 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCHH-HHHHHHHHHhh
Q psy13880 216 LVWKFLQLSLGERLEICKKIGSKHN-DILDELYDIEA 251 (256)
Q Consensus 216 Lle~Fl~L~~~~q~~ia~~lg~s~~-ei~~~l~~i~~ 251 (256)
+|+-...-......+||+.+|.+.. .|.+-|..++.
T Consensus 16 IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 16 ICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3433444566678999999999999 99988888765
No 34
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=31.89 E-value=41 Score=20.16 Aligned_cols=21 Identities=5% Similarity=0.154 Sum_probs=18.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q psy13880 229 LEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~i 249 (256)
.++|+++|+++.+++..|.+.
T Consensus 6 ~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 6 KTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp THHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHc
Confidence 479999999999999988875
No 35
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=31.85 E-value=39 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|++++.+.+.|.+++.
T Consensus 189 t~~~lA~~lg~sr~tvsR~l~~L~~ 213 (230)
T 3iwz_A 189 SRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3889999999999999999988864
No 36
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=31.84 E-value=39 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|+|++.+.+.|.+++.
T Consensus 177 t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 177 GTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4789999999999999999988864
No 37
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=31.53 E-value=40 Score=26.38 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|++++.+.+.|.+++.
T Consensus 166 ~~~lA~~lg~sr~tvsR~l~~l~~ 189 (216)
T 4ev0_A 166 HHELAALAGTSRETVSRVLHALAE 189 (216)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999999988864
No 38
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=31.36 E-value=40 Score=26.71 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+.+|+|++.+.+.|.+++.
T Consensus 166 ~~~lA~~lG~sr~tvsR~l~~L~~ 189 (222)
T 1ft9_A 166 VEEIANLIGSSRQTTSTALNSLIK 189 (222)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999999999999888864
No 39
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=31.03 E-value=40 Score=26.57 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 170 ~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 170 TEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999999999999988864
No 40
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=30.70 E-value=36 Score=21.85 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFLQLSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl~L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
++++.+. .|.++|+.+|+|...|.+
T Consensus 5 ~~i~~~~-----tq~~lA~~lGvs~~~Vs~ 29 (61)
T 1rzs_A 5 DVIDHFG-----TQRAVAKALGISDAAVSQ 29 (61)
T ss_dssp HHHHHHS-----SHHHHHHHHTCCHHHHHH
T ss_pred HHHHHcC-----CHHHHHHHhCCCHHHHHH
Confidence 4555542 589999999999887765
No 41
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=30.56 E-value=1.1e+02 Score=26.40 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=47.3
Q ss_pred CccceEEEEEEE-cCCeeEEEEEeCCCcEEEEeeCCCccCCCCCCeeeeeeccccCcccceEeeeecCCCCCCCCCCCCC
Q psy13880 67 LPRGVYACEFVI-ESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARS 145 (256)
Q Consensus 67 ~~~~vta~~fL~-~~~~l~~l~aD~~gNl~vl~~~p~~~~s~~g~kL~~~~~fhlG~~v~~~~~~~~~~~~~~~~~~~~~ 145 (256)
+...|+++.|-. +++ .++.+..+|.+.+....... .+..+.....|..+..|+++.- .| .
T Consensus 62 h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~----~~~~~~~~~~~~h~~~v~~~~~---~~----------~ 122 (437)
T 3gre_A 62 EPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEII----VGEVYSSSLTYDCSSTVTQITM---IP----------N 122 (437)
T ss_dssp TTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHH----TTCCCSCSEEEECSSCEEEEEE---CT----------T
T ss_pred CCCceEEEEECCCCCC--EEEEecCCceEEEeECcccc----cCcccceeeeccCCCCEEEEEE---eC----------C
Confidence 456899999988 665 67888999999999874311 1111222233344556665442 11 1
Q ss_pred cceEEEEeCCcceEEE
Q psy13880 146 RFLTWYASLDGALGFF 161 (256)
Q Consensus 146 ~~~ll~~T~~GsIg~l 161 (256)
...++.|+.+|.|-+.
T Consensus 123 ~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 123 FDAFAVSSKDGQIIVL 138 (437)
T ss_dssp SSEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCCEEEEE
Confidence 2457778888887665
No 42
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=30.03 E-value=43 Score=26.51 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 180 ~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 180 QEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999999999999988864
No 43
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=29.83 E-value=32 Score=27.08 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=32.3
Q ss_pred eehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 212 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 212 IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
+|-.+|.....=++-...+||+++|.|...+.+.|..++..
T Consensus 28 ~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 28 IDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45667766665566677899999999999999999888653
No 44
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=29.69 E-value=33 Score=25.97 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=30.5
Q ss_pred eehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 212 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 212 IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
+|-.+|+....=++-...++|+++|.|...+.+.|..+..
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455666555555667789999999999999998888764
No 45
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=29.38 E-value=45 Score=26.99 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|++++.+.+.|.+++.
T Consensus 195 t~~~lA~~lG~sr~tvsR~l~~L~~ 219 (243)
T 3la7_A 195 SHQAIAEAIGSTRVTVTRLLGDLRE 219 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 4799999999999999999988864
No 46
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=29.33 E-value=1.7e+02 Score=25.34 Aligned_cols=32 Identities=13% Similarity=0.241 Sum_probs=24.3
Q ss_pred ccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeC
Q psy13880 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQ 100 (256)
Q Consensus 68 ~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~ 100 (256)
..+|+|++|-..+.. .++++..+|+|.+..++
T Consensus 119 ~~~V~~l~~~P~~~~-~lasGs~dg~i~lWd~~ 150 (435)
T 4e54_B 119 DRRATSLAWHPTHPS-TVAVGSKGGDIMLWNFG 150 (435)
T ss_dssp SSCEEEEEECSSCTT-CEEEEETTSCEEEECSS
T ss_pred CCCEEEEEEeCCCCC-EEEEEeCCCEEEEEECC
Confidence 346999999754332 47788999999999764
No 47
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.16 E-value=45 Score=26.70 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 189 ~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 189 MDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHH
Confidence 889999999999999999988864
No 48
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.91 E-value=34 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=29.8
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.++.....-++-...+||+++|.|...+.+.|..+..
T Consensus 11 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445565555556667889999999999999998888764
No 49
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.42 E-value=39 Score=26.62 Aligned_cols=25 Identities=0% Similarity=0.029 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|+|++.+.+.|.+++.
T Consensus 180 t~~~lA~~lg~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 180 AKQLVAGHLSIQPETFSRIMHRLGD 204 (227)
T ss_dssp CTHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3799999999999999999988864
No 50
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=28.41 E-value=54 Score=22.98 Aligned_cols=26 Identities=12% Similarity=0.442 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 226 GERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 226 ~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
..-.+||+++|.+...|.+-|..++.
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~ 56 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR 56 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56689999999999999988888854
No 51
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=28.38 E-value=48 Score=26.32 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|+|++.+.+.|.+++.
T Consensus 182 t~~~lA~~lg~sr~tvsR~l~~l~~ 206 (232)
T 2gau_A 182 SREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3899999999999999999988864
No 52
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=28.00 E-value=39 Score=24.67 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCHHHHHH
Q psy13880 226 GERLEICKKIGSKHNDILD 244 (256)
Q Consensus 226 ~~q~~ia~~lg~s~~ei~~ 244 (256)
-.|++||+++|.|...|.+
T Consensus 59 ~TQREIA~~lGiS~stISR 77 (101)
T 1jhg_A 59 MSQRELKNELGAGIATITR 77 (101)
T ss_dssp SCHHHHHHHHCCCHHHHHH
T ss_pred cCHHHHHHHHCCChhhhhH
Confidence 4578899999988776654
No 53
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=27.65 E-value=59 Score=18.58 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q psy13880 228 RLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i 249 (256)
..+||+.+|++...|.+-+...
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHCcCHHHHHHHHhhH
Confidence 6789999999999888776543
No 54
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=27.22 E-value=38 Score=26.60 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=31.8
Q ss_pred eeehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 211 IIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 211 ~IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
-+|-.++.....=++-...+||+++|.|...+.+.|..+..
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556666665555667889999999999999999888764
No 55
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=27.12 E-value=52 Score=26.62 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|+|++.+.+.|.+++.
T Consensus 179 t~~~iA~~lG~sr~tvsR~l~~L~~ 203 (250)
T 3e6c_C 179 SQKSIGEITGVHHVTVSRVLASLKR 203 (250)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5788999999999999999988864
No 56
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=27.05 E-value=39 Score=25.02 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=28.0
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.+++....=++-...++|+++|.|...+.+.|..+..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344555443334445789999999999999888888754
No 57
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=26.60 E-value=60 Score=21.79 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
++..++.++|+.+|.+..+|..
T Consensus 29 Ps~~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 29 PDDAEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHhhH
Confidence 7899999999999999998854
No 58
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=26.55 E-value=45 Score=26.55 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|++++.+.+.|.+++.
T Consensus 181 ~~~iA~~lg~sr~tvsR~l~~L~~ 204 (237)
T 3fx3_A 181 KMLIAGRLGMKPESLSRAFSRLKA 204 (237)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 689999999999999999988864
No 59
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=26.54 E-value=40 Score=25.43 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=29.4
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.+|.....-++-...+||+++|.+...+.+.|..+..
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445565554445566789999999999999988888764
No 60
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=26.53 E-value=53 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|++||+-+|+|++.+.+.|.+++.
T Consensus 220 ~~~lA~~lG~sr~tvsR~l~~L~~ 243 (260)
T 3kcc_A 220 RQEIGQIVGCSRETVGRILKMLED 243 (260)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 789999999999999999988865
No 61
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.49 E-value=41 Score=21.66 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy13880 215 SLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 215 DLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i 249 (256)
++|..-+.-....+.+.|+.+|.++..+.++|...
T Consensus 22 ~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 22 IFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 44444454444456789999999999999998764
No 62
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=26.24 E-value=62 Score=20.21 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|+++|.+..+|-
T Consensus 22 p~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 22 LASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred cCHHHHHHHHHHhCcCHHHhh
Confidence 678899999999999988764
No 63
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=26.16 E-value=33 Score=21.92 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=19.4
Q ss_pred HHHHHHhCCCHHHHHHHHH-HHhhh
Q psy13880 229 LEICKKIGSKHNDILDELY-DIEAL 252 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~-~i~~~ 252 (256)
.+||+.|+++++.++|-+. |+-++
T Consensus 15 ~~Ia~~L~R~p~hv~ky~~~ELGt~ 39 (52)
T 1k8b_A 15 RELAKAVNRDEEFFAKYLLKETGSA 39 (52)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHSSE
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCC
Confidence 5899999999999999865 55444
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.06 E-value=97 Score=20.12 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=22.4
Q ss_pred HHHHHHhc----CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFLQ----LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl~----L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
..||.++. .+..++.+||+++|.+...|--
T Consensus 16 ~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqv 49 (64)
T 2e19_A 16 SLLKAYYALNAQPSAEELSKIADSVNLPLDVVKK 49 (64)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCc
Confidence 34555544 5788999999999999887643
No 65
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=26.06 E-value=1.2e+02 Score=23.32 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=31.1
Q ss_pred eeehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy13880 211 IIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 211 ~IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i 249 (256)
=|+.+-|++.+ ..++-.++|+++|.+++++...|.++
T Consensus 63 pIs~~ql~~~l--G~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 63 SVSGEQLESAL--GTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp CCCHHHHHHHH--CHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--ChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 35899998888 47888889999999999998887664
No 66
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=25.93 E-value=71 Score=19.96 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=19.7
Q ss_pred HHHHHHHHh-----CCCHHHHHHHHHHHh
Q psy13880 227 ERLEICKKI-----GSKHNDILDELYDIE 250 (256)
Q Consensus 227 ~q~~ia~~l-----g~s~~ei~~~l~~i~ 250 (256)
...++++.+ +++...|.++|.++.
T Consensus 21 t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 21 TQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp SHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 457788888 899999999998764
No 67
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.41 E-value=44 Score=25.30 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|-.++.....=++....++|+++|.|...+.+.|..+..
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445555444445556789999999999999988888764
No 68
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=25.25 E-value=60 Score=19.75 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCHHHHHHHH
Q psy13880 227 ERLEICKKIGSKHNDILDEL 246 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l 246 (256)
.+.+||+.+|.++..|.+.+
T Consensus 33 s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 33 TVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 47789999999998887765
No 69
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=25.22 E-value=57 Score=25.81 Aligned_cols=26 Identities=8% Similarity=0.279 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
...++|+++|+|...|.++|..|+..
T Consensus 38 s~~eLa~~l~vS~~Ti~rdi~~L~~~ 63 (187)
T 1j5y_A 38 SGAQLAEELSVSRQVIVQDIAYLRSL 63 (187)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46789999999999999999998753
No 70
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=24.94 E-value=85 Score=20.57 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=18.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 229 LEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
..+|++.|++.++|++-|..+..
T Consensus 29 ~~~a~kygV~kdeV~~~LrrLe~ 51 (59)
T 2xvc_A 29 EHFSKVYGVEKQEVVKLLEALKN 51 (59)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 45788899999999998888754
No 71
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=24.83 E-value=45 Score=25.57 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=29.7
Q ss_pred eehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 212 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 212 IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|-.+|.....-++-...+||+++|.|...+.+.|..+..
T Consensus 11 ~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 11 TDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445555544445556789999999999999998888764
No 72
>3lhr_A Zinc finger protein 24; SCAN domain, protein structure initiative, center for eukary structural genomics, PSI-2, CESG, nucleus, phosphoprotein; 1.90A {Homo sapiens} SCOP: a.28.3.0
Probab=24.78 E-value=1.2e+02 Score=21.72 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCceeehHHHHHHhc-CCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 208 SRGIIDGSLVWKFLQ-LSLGERLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 208 ~k~~IDGDLle~Fl~-L~~~~q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
+.-|++-=++|+|+. ||.+.|..|-..--.+.+++..-++++...
T Consensus 45 KEQileLLVLEQFL~ilP~e~q~wv~~~~p~s~~eav~l~E~l~~~ 90 (93)
T 3lhr_A 45 KEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVTVLEDLESE 90 (93)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhCCCCHHHHHHHHHHHHhh
Confidence 457888889999987 788888888777767888888888877653
No 73
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=24.70 E-value=2.6e+02 Score=22.05 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=25.3
Q ss_pred CccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeC
Q psy13880 67 LPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQ 100 (256)
Q Consensus 67 ~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~ 100 (256)
+...|+++.| .+++ .++.+..+|.+.++..+
T Consensus 17 h~~~v~~~~~-~~~~--~l~s~~~dg~v~vw~~~ 47 (313)
T 3odt_A 17 HDQDVRDVVA-VDDS--KVASVSRDGTVRLWSKD 47 (313)
T ss_dssp CSSCEEEEEE-EETT--EEEEEETTSEEEEEEES
T ss_pred CCCCcEEEEe-cCCC--EEEEEEcCCcEEEEECC
Confidence 4558999999 6665 58899999999999874
No 74
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=24.58 E-value=69 Score=19.98 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|.++|.+..+|-
T Consensus 25 p~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 25 LSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCHHHHHHHHHHTTCCHHHHH
T ss_pred cCHHHHHHHHHHHCcCHHHhh
Confidence 688899999999999988774
No 75
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=24.48 E-value=3.1e+02 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeC
Q psy13880 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQ 100 (256)
Q Consensus 68 ~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~ 100 (256)
...|+++.|..+++ .++++..+|.+.++...
T Consensus 111 ~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 111 SSTVTQITMIPNFD--AFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp SSCEEEEEECTTSS--EEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEEeCCCC--EEEEEeCCCEEEEEEec
Confidence 45799999987665 68889999999999874
No 76
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.27 E-value=80 Score=19.44 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.++||+.+|.|+..|...+..+..
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 479999999999888877766643
No 77
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=23.24 E-value=1e+02 Score=21.10 Aligned_cols=24 Identities=17% Similarity=0.021 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHhCCCHHHHHH
Q psy13880 221 LQLSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 221 l~L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
-..+.+++.+||.++|.+..+|-.
T Consensus 33 pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 33 AYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCcCHHHhhH
Confidence 347899999999999999988754
No 78
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=23.12 E-value=3e+02 Score=22.20 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=23.5
Q ss_pred CccceEEEEEEEcCCeeEEEEEe--CCCcEEEEeeC
Q psy13880 67 LPRGVYACEFVIESSSMGFMISD--KDKNVVLFMYQ 100 (256)
Q Consensus 67 ~~~~vta~~fL~~~~~l~~l~aD--~~gNl~vl~~~ 100 (256)
+...|+++.|-.++..+-..+++ .++.+.++..+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~ 52 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ 52 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC
Confidence 34588999998877654433333 38999999875
No 79
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=22.77 E-value=76 Score=20.03 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+..++.++|.++|.+..+|--
T Consensus 30 p~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 30 LNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHH
T ss_pred cCHHHHHHHHHHHCcCHHHHHH
Confidence 6888999999999999987743
No 80
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.70 E-value=91 Score=19.89 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
..++||+.+|.++..|...+..+..
T Consensus 28 s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 28 TTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5689999999999888877776544
No 81
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.56 E-value=93 Score=19.57 Aligned_cols=24 Identities=8% Similarity=0.037 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
..++||+.+|.|+..|.+.+....
T Consensus 33 s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357999999999988877666543
No 82
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=22.18 E-value=45 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.275 Sum_probs=26.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy13880 214 GSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 214 GDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i 249 (256)
-.+|+.-+.-. ..+.+.|+.+|.++..+.++|...
T Consensus 23 r~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 23 AQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHHHh
Confidence 45666655555 567789999999999999988753
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=22.12 E-value=3.6e+02 Score=22.74 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=27.0
Q ss_pred ccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeCCC
Q psy13880 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPE 102 (256)
Q Consensus 68 ~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~p~ 102 (256)
.-+|+|+.|-.+++ .++++..+|.+.++..+..
T Consensus 28 ~~~V~~v~~s~~g~--~la~g~~dg~v~iw~~~~~ 60 (447)
T 3dw8_B 28 ADIISTVEFNHSGE--LLATGDKGGRVVIFQQEQE 60 (447)
T ss_dssp GGSEEEEEECSSSS--EEEEEETTSEEEEEEECC-
T ss_pred cCcEEEEEECCCCC--EEEEEcCCCeEEEEEecCC
Confidence 45899999987776 6778899999999998653
No 84
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=21.81 E-value=84 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|.++|.+..+|-
T Consensus 27 p~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 27 LSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHH
Confidence 578899999999999988763
No 85
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=21.79 E-value=57 Score=26.16 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHhh
Q psy13880 226 GERLEICKKIGSKH-NDILDELYDIEA 251 (256)
Q Consensus 226 ~~q~~ia~~lg~s~-~ei~~~l~~i~~ 251 (256)
-.|++||+-+|+|+ +.+.+.|.+++.
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 34889999999999 799999988864
No 86
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=21.49 E-value=1.9e+02 Score=20.40 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILDE 245 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~ 245 (256)
.+.+++.++|+++|.+..+|..=
T Consensus 33 Ps~~ek~~LA~~tgLt~~QV~~W 55 (89)
T 2lk2_A 33 PSEQEKALLSQQTHLSTLQVCNW 55 (89)
T ss_dssp CCHHHHHHHHHHSSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHHHH
Confidence 79999999999999998888543
No 87
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=21.38 E-value=85 Score=20.03 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|.++|.+..+|-
T Consensus 28 p~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 28 ISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred cCHHHHHHHHHHhCcCHHHhh
Confidence 688899999999999988764
No 88
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=21.37 E-value=84 Score=19.79 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|.++|.+..+|-
T Consensus 26 p~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 26 VSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp CCHHHHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHH
Confidence 588899999999999988774
No 89
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=21.36 E-value=3.7e+02 Score=22.61 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.0
Q ss_pred ceEEEEEEEcCCeeEEEEEeCCCcEEEEeeC
Q psy13880 70 GVYACEFVIESSSMGFMISDKDKNVVLFMYQ 100 (256)
Q Consensus 70 ~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~ 100 (256)
.|+++.|..++ .++.+..+|.+.+...+
T Consensus 84 ~v~~~~~s~d~---~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 84 GVADLTWVGER---GILVASDSGAVELWELD 111 (344)
T ss_dssp CEEEEEEETTT---EEEEEETTSEEEEEEEC
T ss_pred CEEEEEEeCCC---eEEEEECCCEEEEEecc
Confidence 58999998776 68889999999999874
No 90
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=21.26 E-value=88 Score=19.66 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+.+++.++|+++|.+..+|-.
T Consensus 26 p~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 26 LDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCHHHHHHHHHHHCcCHHHHHH
Confidence 4788899999999999987753
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.25 E-value=1e+02 Score=20.75 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 226 GERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 226 ~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
-..++||+.+|.+...|...+..+..
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34678999999999888777766544
No 92
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=21.04 E-value=61 Score=26.71 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q psy13880 228 RLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i 249 (256)
-+++|+.+|.++.+|.|||...
T Consensus 35 S~ela~~~gv~~~qiRkDls~f 56 (212)
T 3keo_A 35 SKQIADALGIDSATVRRDFSYF 56 (212)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3789999999999999999754
No 93
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=20.96 E-value=89 Score=19.76 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|.++|.+..+|-
T Consensus 28 p~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 28 LTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHH
Confidence 688899999999999988764
No 94
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=20.79 E-value=89 Score=19.81 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|..+|.+...|-
T Consensus 28 p~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 28 LSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHhh
Confidence 688899999999999988774
No 95
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.56 E-value=53 Score=22.80 Aligned_cols=36 Identities=6% Similarity=0.050 Sum_probs=26.3
Q ss_pred hHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy13880 214 GSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 214 GDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i 249 (256)
-++|+.-+.-....+.+.|+.+|.++..+.++|...
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 445555555444456789999999999999988753
No 96
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.44 E-value=91 Score=16.60 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHhc
Q psy13880 166 EKNYRRLLMLQNVMVTH 182 (256)
Q Consensus 166 ~~~~~~L~~LQ~~l~~~ 182 (256)
++.|+-|..||..+++.
T Consensus 4 delykeledlqerlrkl 20 (27)
T 3twe_A 4 DELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788899999988753
No 97
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.40 E-value=90 Score=21.40 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILDE 245 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~ 245 (256)
++..++.+||+.+|.+..+|..=
T Consensus 28 Ps~~er~~LA~~tgLte~qIkvW 50 (76)
T 2ecc_A 28 ARREDYQKLEQITGLPRPEIIQW 50 (76)
T ss_dssp CCHHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHhhHH
Confidence 68999999999999999988543
No 98
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=20.08 E-value=93 Score=19.57 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|+++|.+..+|-
T Consensus 24 p~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 24 PDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp CCHHHHHHHHHHHTSCHHHHH
T ss_pred cCHHHHHHHHHHHCcCHHHHH
Confidence 578889999999999988774
Done!