Query psy13880
Match_columns 256
No_of_seqs 186 out of 525
Neff 7.3
Searched_HMMs 13730
Date Fri Aug 16 22:46:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13880.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13880hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j5ya1 a.4.5.1 (A:3-67) Putat 74.1 1.5 0.00011 27.7 3.5 25 228-252 25-49 (65)
2 d1biaa1 a.4.5.1 (A:1-63) Bioti 70.7 2 0.00015 27.0 3.6 25 228-252 22-46 (63)
3 d1i5za1 a.4.5.4 (A:138-206) Ca 69.1 2.4 0.00018 26.8 3.7 25 227-251 31-55 (69)
4 d1dula_ a.36.1.1 (A:) Signal s 64.7 5.1 0.00037 25.8 4.6 27 224-250 34-60 (69)
5 d2cg4a1 a.4.5.32 (A:4-66) Regu 63.6 2.5 0.00018 26.5 2.8 41 212-252 6-46 (63)
6 d2cfxa1 a.4.5.32 (A:1-63) Tran 63.2 2.2 0.00016 26.7 2.5 40 212-251 6-45 (63)
7 d1zyba1 a.4.5.4 (A:148-220) Pr 61.4 4.1 0.0003 26.2 3.7 24 228-251 30-53 (73)
8 d2gaua1 a.4.5.4 (A:152-232) Tr 61.4 3.9 0.00029 26.4 3.7 25 227-251 31-55 (81)
9 d3e5ua1 a.4.5.4 (A:148-227) Ch 60.2 4.4 0.00032 26.2 3.8 25 228-252 33-57 (80)
10 d1i1ga1 a.4.5.32 (A:2-61) LprA 60.0 3.1 0.00022 25.8 2.7 40 213-252 5-44 (60)
11 d1ft9a1 a.4.5.4 (A:134-213) CO 58.6 4.8 0.00035 26.0 3.8 25 228-252 33-57 (80)
12 d1p7ia_ a.4.1.1 (A:) Engrailed 58.1 6.5 0.00048 23.5 4.1 21 223-243 24-44 (53)
13 d2ffha2 a.36.1.1 (A:319-418) S 56.7 7.2 0.00052 26.9 4.5 27 224-250 63-89 (100)
14 d2zcwa1 a.4.5.4 (A:118-199) Tr 56.4 5.4 0.0004 25.8 3.7 25 227-251 31-55 (82)
15 d1hq1a_ a.36.1.1 (A:) Signal s 55.1 8 0.00058 26.8 4.6 28 223-250 67-94 (104)
16 d1x2na1 a.4.1.1 (A:6-67) Homeo 53.4 15 0.0011 22.5 5.4 35 215-249 15-56 (62)
17 d1yfqa_ b.69.4.2 (A:) Cell cyc 52.4 40 0.0029 24.8 10.7 33 67-101 10-42 (342)
18 d2dt5a1 a.4.5.38 (A:4-77) Tran 52.4 5.2 0.00038 26.1 3.0 21 229-249 29-49 (74)
19 d1qb2a_ a.36.1.1 (A:) SRP54M { 52.4 5.2 0.00038 27.9 3.2 28 223-250 73-100 (107)
20 d2cyya1 a.4.5.32 (A:5-64) Puta 51.9 5.1 0.00037 24.6 2.8 39 213-251 5-43 (60)
21 d1k61a_ a.4.1.1 (A:) mat alpha 51.6 10 0.00076 23.2 4.3 25 223-247 26-50 (60)
22 d9anta_ a.4.1.1 (A:) Antennape 50.7 11 0.00082 22.9 4.3 27 216-242 11-41 (56)
23 d2cqxa1 a.4.1.1 (A:8-66) LAG1 49.3 9.3 0.00068 23.4 3.7 30 215-244 14-48 (59)
24 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 48.6 10 0.00073 24.2 4.0 32 215-246 14-52 (73)
25 d2e1oa1 a.4.1.1 (A:8-64) Homeo 48.4 11 0.00084 22.7 4.1 27 217-243 15-45 (57)
26 d1b0nb_ a.34.1.1 (B:) SinI ant 46.0 7.6 0.00056 20.2 2.4 16 232-247 14-29 (31)
27 d1rp3a1 a.4.13.1 (A:87-163) Si 45.4 9.7 0.0007 24.3 3.5 24 228-251 29-52 (77)
28 d1qzxa2 a.36.1.1 (A:295-432) S 43.7 14 0.001 26.7 4.5 29 223-251 101-129 (138)
29 d2fi2a1 a.28.3.2 (A:37-128) Zi 43.2 19 0.0014 24.2 4.9 44 208-251 44-88 (92)
30 d1l0oc_ a.4.13.2 (C:) SigmaF { 43.2 11 0.00083 22.7 3.4 20 229-248 35-54 (57)
31 d1e3oc1 a.4.1.1 (C:104-160) Oc 42.7 16 0.0011 22.1 4.1 29 216-244 12-44 (57)
32 d1jgga_ a.4.1.1 (A:) Even-skip 40.2 12 0.00088 22.6 3.2 21 223-243 24-44 (57)
33 d1au7a1 a.4.1.1 (A:103-160) Pi 39.4 19 0.0014 21.7 4.1 22 223-244 24-45 (58)
34 d1le8a_ a.4.1.1 (A:) Mating ty 38.2 14 0.001 21.9 3.2 22 223-244 22-43 (53)
35 d2craa1 a.4.1.1 (A:7-64) Homeo 38.0 14 0.001 22.4 3.3 21 223-243 26-46 (58)
36 d2bgca1 a.4.5.4 (A:138-237) Li 37.7 16 0.0011 24.8 3.8 26 226-251 32-58 (100)
37 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 36.9 15 0.0011 22.2 3.2 20 223-242 25-44 (58)
38 d1gdta1 a.4.1.2 (A:141-183) ga 36.0 12 0.00084 21.7 2.3 20 229-248 22-41 (43)
39 d1vnda_ a.4.1.1 (A:) VND/NK-2 35.9 21 0.0015 22.9 4.1 29 215-243 22-54 (77)
40 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 34.8 17 0.0012 23.5 3.4 22 223-244 46-67 (80)
41 d1b72a_ a.4.1.1 (A:) Homeobox 33.4 26 0.0019 23.1 4.3 27 217-243 42-72 (88)
42 d1zq3p1 a.4.1.1 (P:2-68) Homeo 33.3 17 0.0013 22.6 3.2 28 216-243 15-46 (67)
43 d2ecba1 a.4.1.1 (A:8-83) Zinc 32.6 26 0.0019 22.2 4.1 24 223-246 29-52 (76)
44 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 31.4 31 0.0023 21.4 4.2 30 215-244 21-54 (67)
45 d1hlva1 a.4.1.7 (A:1-66) DNA-b 30.7 16 0.0011 23.1 2.6 35 215-249 15-52 (66)
46 d2icta1 a.35.1.3 (A:8-94) Anti 29.1 10 0.00075 24.9 1.5 18 223-240 41-58 (87)
47 d1ijwc_ a.4.1.2 (C:) HIN recom 28.5 17 0.0013 21.1 2.3 19 228-246 24-42 (47)
48 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 28.5 29 0.0021 21.2 3.5 29 225-253 24-52 (59)
49 d1pufa_ a.4.1.1 (A:) Homeobox 28.5 33 0.0024 21.9 4.1 26 217-242 28-57 (77)
50 d1s7ea1 a.4.1.1 (A:103-152) He 26.9 12 0.00085 21.9 1.3 21 223-243 23-43 (50)
51 d1x2ma1 a.4.1.1 (A:8-59) Lag1 26.9 26 0.0019 20.6 3.0 21 223-243 19-39 (52)
52 d2cuea1 a.4.1.1 (A:7-74) Paire 26.6 27 0.002 21.7 3.2 21 223-243 26-46 (68)
53 d1pgua2 b.69.4.1 (A:327-613) A 26.6 1.1E+02 0.008 22.2 9.0 82 67-161 161-242 (287)
54 d1umqa_ a.4.1.12 (A:) Photosyn 26.2 17 0.0013 22.1 2.1 35 214-248 22-56 (60)
55 d1ri6a_ b.69.11.1 (A:) Putativ 25.9 1.2E+02 0.0086 22.3 10.1 50 71-128 278-328 (333)
56 d2ppxa1 a.35.1.3 (A:30-91) Unc 25.0 24 0.0018 21.3 2.7 17 227-243 14-30 (62)
57 d2hoea1 a.4.5.63 (A:10-71) N-a 25.0 39 0.0029 20.4 3.8 25 227-251 14-38 (62)
58 d2ev0a1 a.4.5.24 (A:2-62) Mang 24.9 36 0.0027 20.6 3.6 23 228-250 24-46 (61)
59 d1qpza1 a.35.1.5 (A:2-58) Puri 24.2 28 0.002 21.0 2.8 21 228-248 3-23 (57)
60 d1sfua_ a.4.5.19 (A:) 34L {Yab 24.1 40 0.0029 21.4 3.6 25 228-252 27-51 (70)
61 d1z05a1 a.4.5.63 (A:10-80) Tra 23.9 41 0.003 20.6 3.8 30 222-251 17-46 (71)
62 d1a04a1 a.4.6.2 (A:150-216) Ni 23.8 37 0.0027 20.6 3.5 24 229-252 25-48 (67)
63 d1wi3a_ a.4.1.1 (A:) DNA-bindi 22.9 34 0.0025 21.3 3.2 22 223-244 33-54 (71)
64 d1fsea_ a.4.6.2 (A:) Germinati 22.8 41 0.003 20.4 3.6 24 228-251 22-45 (67)
65 d1fjla_ a.4.1.1 (A:) Paired pr 22.5 37 0.0027 20.8 3.2 21 223-243 27-47 (65)
66 d1ftta_ a.4.1.1 (A:) Thyroid t 22.2 36 0.0026 21.1 3.2 21 223-243 27-47 (68)
67 d1l3la1 a.4.6.2 (A:170-234) Qu 21.9 44 0.0032 20.1 3.6 23 229-251 23-45 (65)
68 d1etxa_ a.4.1.12 (A:) FIS prot 21.6 25 0.0018 23.1 2.4 38 212-249 49-86 (89)
69 d2isya1 a.4.5.24 (A:2-64) Iron 21.5 50 0.0036 20.1 3.7 25 226-250 24-48 (63)
70 d2auwa1 a.35.1.10 (A:88-154) H 21.4 31 0.0022 21.6 2.6 17 228-244 17-33 (67)
71 d1bw5a_ a.4.1.1 (A:) Insulin g 21.0 36 0.0026 20.9 3.0 22 223-244 28-49 (66)
72 d1uhsa_ a.4.1.1 (A:) Homeodoma 20.8 37 0.0027 21.4 3.0 21 223-243 27-47 (72)
73 d1ku3a_ a.4.13.2 (A:) Sigma70 20.3 34 0.0025 20.8 2.7 29 215-243 15-46 (61)
74 d1tbga_ b.69.4.1 (A:) beta1-su 20.2 1.5E+02 0.011 21.5 9.3 74 67-162 225-298 (340)
No 1
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=74.13 E-value=1.5 Score=27.72 Aligned_cols=25 Identities=8% Similarity=0.287 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
-.++|+.+|+|...|.+||..++..
T Consensus 25 ~~~La~~l~VS~~TI~rdi~~L~~~ 49 (65)
T d1j5ya1 25 GAQLAEELSVSRQVIVQDIAYLRSL 49 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4789999999999999999998653
No 2
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=70.75 E-value=2 Score=26.97 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
-.++|+.+|+|...|+++|..++..
T Consensus 22 ~~eLa~~l~vS~~ti~r~i~~L~~~ 46 (63)
T d1biaa1 22 GEQLGETLGMSRAAINKHIQTLRDW 46 (63)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4689999999999999999999764
No 3
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.11 E-value=2.4 Score=26.82 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|+|++.+.+.|.+++.
T Consensus 31 t~~~lA~~~G~sRetvsr~L~~l~~ 55 (69)
T d1i5za1 31 TRQEIGQIVGCSRETVGRILKMLED 55 (69)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4899999999999999999988865
No 4
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=64.74 E-value=5.1 Score=25.80 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
..++++.||+..|++++||-+.|....
T Consensus 34 ~~SR~~RIA~GSG~~~~eVn~Llkqf~ 60 (69)
T d1dula_ 34 KGSRKRRIAAGSGMQVQDVNRLLKQFD 60 (69)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred chhHHHHHHccCCCCHHHHHHHHHHHH
Confidence 568899999999999999988776553
No 5
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=63.62 E-value=2.5 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=32.5
Q ss_pred eehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 212 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 212 IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
+|-.+|.....=++....+||+++|.|...+...|..+...
T Consensus 6 ~D~~IL~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~ 46 (63)
T d2cg4a1 6 LDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 46 (63)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 35566666666677778999999999999999999888643
No 6
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=63.19 E-value=2.2 Score=26.74 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=30.3
Q ss_pred eehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 212 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 212 IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
+|-.+|+....=++--..+||+++|.|++++.+.+..+..
T Consensus 6 ~D~~IL~~L~~n~r~s~~~iA~~lgis~~tv~~Ri~~L~~ 45 (63)
T d2cfxa1 6 IDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES 45 (63)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455555555545556789999999999999999988864
No 7
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=61.44 E-value=4.1 Score=26.17 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|+++|+-+|++++.+.+.|.+++.
T Consensus 30 ~~elA~~lg~sr~tvsr~l~~l~~ 53 (73)
T d1zyba1 30 MDDLARCLDDTRLNISKTLNELQD 53 (73)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 689999999999999999988865
No 8
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=61.38 E-value=3.9 Score=26.38 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||.-+|+|++.+.+-|.+++.
T Consensus 31 t~~eLA~~~G~sretvsr~L~~l~~ 55 (81)
T d2gaua1 31 SREELATLSNMTVSNAIRTLSTFVS 55 (81)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3788999999999999999988864
No 9
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=60.20 E-value=4.4 Score=26.16 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=22.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
|++||+-+|+|++.+.+.|.+++..
T Consensus 33 ~~elA~~~g~sretvsr~l~~l~~~ 57 (80)
T d3e5ua1 33 QKSIGEITGVHHVTVSRVLASLKRE 57 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999888653
No 10
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=59.99 E-value=3.1 Score=25.76 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=29.4
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
|-.+|.....=++-...+||+++|.+++.+.+.|..+...
T Consensus 5 D~kIl~~L~~n~r~s~~~lA~~~gls~~~v~~Ri~~L~~~ 44 (60)
T d1i1ga1 5 DKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 44 (60)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3344444444455567899999999999999999888653
No 11
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=58.56 E-value=4.8 Score=25.99 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
|++||+-+|++++.+.+.|..++..
T Consensus 33 ~~eiA~~lG~sretvsr~l~~l~~~ 57 (80)
T d1ft9a1 33 VEEIANLIGSSRQTTSTALNSLIKE 57 (80)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 7899999999999999999988653
No 12
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=58.13 E-value=6.5 Score=23.52 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+.+++.++|+++|.+...|-
T Consensus 24 p~~~~r~~LA~~lgL~~~qV~ 44 (53)
T d1p7ia_ 24 LTERRRQQLSSELGLNEAQIK 44 (53)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHhCCChHHhh
Confidence 789999999999999988774
No 13
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=56.73 E-value=7.2 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 224 SLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 224 ~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
..++++.||+..|++++||-+.|....
T Consensus 63 ~~sR~~RIA~GSG~~~~eV~~Llkqf~ 89 (100)
T d2ffha2 63 NGSRRKRIAKGSGTSVQEVNRFIKAFE 89 (100)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 568899999999999999988887654
No 14
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=56.38 E-value=5.4 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.|++||+-+|++++.+.+.|.+++.
T Consensus 31 t~~elA~~lg~sr~tv~r~L~~l~~ 55 (82)
T d2zcwa1 31 THDELAAAVGSVRETVTKVIGELAR 55 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3789999999999999999988865
No 15
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=55.12 E-value=8 Score=26.79 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 223 LSLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
+..++++.||+..|++++||-+.|....
T Consensus 67 l~~SR~~RIA~GSG~~~~eV~~Llkqf~ 94 (104)
T d1hq1a_ 67 IKGSRKRRIAAGSGMQVQDVNRLLKQFD 94 (104)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHccCCCCHHHHHHHHHHHH
Confidence 4678899999999999999988877653
No 16
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.42 E-value=15 Score=22.51 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHhc-------CCHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy13880 215 SLVWKFLQ-------LSLGERLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 215 DLle~Fl~-------L~~~~q~~ia~~lg~s~~ei~~~l~~i 249 (256)
++|+.++. -+.+++.+||+++|.+..+|..=+.+-
T Consensus 15 ~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~ 56 (62)
T d1x2na1 15 NVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 56 (62)
T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHH
Confidence 45666554 689999999999999999986655443
No 17
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.44 E-value=40 Score=24.81 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=26.6
Q ss_pred CccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeCC
Q psy13880 67 LPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQP 101 (256)
Q Consensus 67 ~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~p 101 (256)
+.-.|+++.|-.+++ .++++..+|.+.++..+.
T Consensus 10 h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~ 42 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDI 42 (342)
T ss_dssp CSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEET
T ss_pred CCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccC
Confidence 344799999987776 577888999999998854
No 18
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=52.43 E-value=5.2 Score=26.09 Aligned_cols=21 Identities=5% Similarity=-0.073 Sum_probs=18.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q psy13880 229 LEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~i 249 (256)
.++|+.+|.++.+|.|||.-+
T Consensus 29 ~~La~~~gi~~~qVRKDls~f 49 (74)
T d2dt5a1 29 EQLGGLAQVTAFQVRKDLSYF 49 (74)
T ss_dssp HHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHh
Confidence 578999999999999998754
No 19
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.42 E-value=5.2 Score=27.91 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 223 LSLGERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
++.++++.||+..|++++||-+.|....
T Consensus 73 ~~~sR~~RIA~GSG~~~~eVn~Llkqf~ 100 (107)
T d1qb2a_ 73 KQPGRIQRVARGSGVSTRDVQELLTQYT 100 (107)
T ss_dssp HSTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cChHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3677899999999999999988877654
No 20
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=51.91 E-value=5.1 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=29.1
Q ss_pred ehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 213 DGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 213 DGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|--+|+....=++.-..+||+++|.|...+...+..+..
T Consensus 5 D~~Il~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~~L~~ 43 (60)
T d2cyya1 5 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 43 (60)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444555555545556789999999999999988888754
No 21
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.61 E-value=10 Score=23.16 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILDELY 247 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~l~ 247 (256)
.+.+++.+||+++|.++.+|-.=+.
T Consensus 26 Ps~~e~~~La~~~gL~~~qV~~WF~ 50 (60)
T d1k61a_ 26 LDTKGLENLMKNTSLSRIQIKNWVS 50 (60)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHCcCHHHHhHHhH
Confidence 7899999999999999998865443
No 22
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=50.70 E-value=11 Score=22.85 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=21.3
Q ss_pred HHHHHhc----CCHHHHHHHHHHhCCCHHHH
Q psy13880 216 LVWKFLQ----LSLGERLEICKKIGSKHNDI 242 (256)
Q Consensus 216 Lle~Fl~----L~~~~q~~ia~~lg~s~~ei 242 (256)
.||.++. .+..++.++|+.+|.++..|
T Consensus 11 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V 41 (56)
T d9anta_ 11 ELEKEFHFNRYLTRRRRIEIAHALSLTERQI 41 (56)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCCChhHe
Confidence 3444443 58899999999999998876
No 23
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.31 E-value=9.3 Score=23.43 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=23.5
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFLQ-----LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl~-----L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
++||.++. .+..++.+||+++|.+..+|-.
T Consensus 14 ~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~ 48 (59)
T d2cqxa1 14 DTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 48 (59)
T ss_dssp THHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 46677652 5788999999999999988754
No 24
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.60 E-value=10 Score=24.19 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHh-------cCCHHHHHHHHHHhCCCHHHHHHHH
Q psy13880 215 SLVWKFL-------QLSLGERLEICKKIGSKHNDILDEL 246 (256)
Q Consensus 215 DLle~Fl-------~L~~~~q~~ia~~lg~s~~ei~~~l 246 (256)
+.|+.++ ..+.+++.+||.++|.+..+|.-=.
T Consensus 14 ~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF 52 (73)
T d1pufb_ 14 EILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWF 52 (73)
T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHH
Confidence 4566655 3789999999999999999886443
No 25
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.35 E-value=11 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=21.6
Q ss_pred HHHHhc----CCHHHHHHHHHHhCCCHHHHH
Q psy13880 217 VWKFLQ----LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 217 le~Fl~----L~~~~q~~ia~~lg~s~~ei~ 243 (256)
||.++. .+.+++.+||.++|.+..+|-
T Consensus 15 Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~ 45 (57)
T d2e1oa1 15 LEKKFETQKYLSPPERKRLAKMLQLSERQVK 45 (57)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 455443 689999999999999998764
No 26
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=46.03 E-value=7.6 Score=20.17 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=13.9
Q ss_pred HHHhCCCHHHHHHHHH
Q psy13880 232 CKKIGSKHNDILDELY 247 (256)
Q Consensus 232 a~~lg~s~~ei~~~l~ 247 (256)
|++.+.+++||.|.|.
T Consensus 14 akeanispeeirkyll 29 (31)
T d1b0nb_ 14 AKEANISPEEIRKYLL 29 (31)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHh
Confidence 7888999999999874
No 27
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=45.44 E-value=9.7 Score=24.29 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
-.+||+.+|.+++++.+-+..+..
T Consensus 29 ~~EiA~~lg~s~~e~~~~l~~~~~ 52 (77)
T d1rp3a1 29 DEEVAKELGISTEELFKTLDKINF 52 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhc
Confidence 378999999999999888776653
No 28
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=43.65 E-value=14 Score=26.75 Aligned_cols=29 Identities=10% Similarity=0.065 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 223 LSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
|..++.+.||+..|++++||.+.|.....
T Consensus 101 l~~SR~~RIA~GSG~~~~eV~~Llkqf~~ 129 (138)
T d1qzxa2 101 IDKSRMRRIAEGSGLEVEEVRELLEWYNN 129 (138)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999888876543
No 29
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.25 E-value=19 Score=24.17 Aligned_cols=44 Identities=7% Similarity=0.062 Sum_probs=38.4
Q ss_pred CCceeehHHHHHHhc-CCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 208 SRGIIDGSLVWKFLQ-LSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 208 ~k~~IDGDLle~Fl~-L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
+..|++-=++|+|+. ||.+.|..|-..--.|.+++...++++..
T Consensus 44 keqilelLVLEQFl~~lP~e~~~~V~e~~p~s~~eav~L~Edl~~ 88 (92)
T d2fi2a1 44 KEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAALVDGLRR 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHhCCCCHHHHHHHHHHHhh
Confidence 347999999999998 89999999988888899999999888864
No 30
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=43.16 E-value=11 Score=22.73 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q psy13880 229 LEICKKIGSKHNDILDELYD 248 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~ 248 (256)
.+||+.+|.++++|..-|+-
T Consensus 35 ~EiA~~l~~~~e~V~~~l~a 54 (57)
T d1l0oc_ 35 TEIADHLGISPEDVVLAQEA 54 (57)
T ss_dssp HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHH
Confidence 68999999999999877764
No 31
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.70 E-value=16 Score=22.06 Aligned_cols=29 Identities=10% Similarity=-0.021 Sum_probs=22.8
Q ss_pred HHHHHhc----CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 216 LVWKFLQ----LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 216 Lle~Fl~----L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.||.++. .+.+++.+||.++|.+..+|--
T Consensus 12 ~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~ 44 (57)
T d1e3oc1 12 ALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 44 (57)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHCCCHHHHHH
Confidence 4555544 5889999999999999988753
No 32
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=40.18 E-value=12 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.+||+++|.+...|-
T Consensus 24 p~~~~r~~LA~~lgl~~~qV~ 44 (57)
T d1jgga_ 24 VSRPRRCELAAQLNLPESTIK 44 (57)
T ss_dssp CCHHHHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHHHhCCChhHhh
Confidence 688999999999999998774
No 33
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.42 E-value=19 Score=21.72 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+.+++.+||+.+|.++.+|--
T Consensus 24 P~~~~~~~La~~l~l~~~~V~~ 45 (58)
T d1au7a1 24 PSSQEIMRMAEELNLEKEVVRV 45 (58)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHH
Confidence 6889999999999999988753
No 34
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.22 E-value=14 Score=21.93 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+..++++||+++|.++.+|--
T Consensus 22 P~~~~~~~LA~~lgl~~~qV~~ 43 (53)
T d1le8a_ 22 LNSKEKEEVAKKCGITPLQVRV 43 (53)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCCCHHHHHH
Confidence 6899999999999999988753
No 35
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.04 E-value=14 Score=22.43 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+.+++++||+.+|.+..+|-
T Consensus 26 p~~~~r~~LA~~l~l~~~qV~ 46 (58)
T d2craa1 26 ITKDKRRKISAATSLSERQIT 46 (58)
T ss_dssp CCHHHHHHHHHHTCCCHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHee
Confidence 579999999999999998774
No 36
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=37.68 E-value=16 Score=24.79 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHhh
Q psy13880 226 GERLEICKKIGSK-HNDILDELYDIEA 251 (256)
Q Consensus 226 ~~q~~ia~~lg~s-~~ei~~~l~~i~~ 251 (256)
-.|++||.-+|++ ++.|.+.|.+++.
T Consensus 32 lTqeeLA~~lG~s~ReTVsR~L~~L~~ 58 (100)
T d2bgca1 32 LTMQELGYSSGIAHSSAVSRIISKLKQ 58 (100)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3589999999986 7889898888865
No 37
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.94 E-value=15 Score=22.17 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHhCCCHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDI 242 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei 242 (256)
.+.++++++|..+|.+..+|
T Consensus 25 P~~~~r~~LA~~l~l~~~~V 44 (58)
T d1ig7a_ 25 LSIAERAEFSSSLSLTETQV 44 (58)
T ss_dssp CCHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHHHhCCChhhe
Confidence 68999999999999999877
No 38
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=35.98 E-value=12 Score=21.73 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=17.2
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q psy13880 229 LEICKKIGSKHNDILDELYD 248 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~ 248 (256)
-+||++||.++..|.+-|.+
T Consensus 22 t~IAk~lgI~R~SVYR~L~~ 41 (43)
T d1gdta1 22 SHISKTMNIARSTVYKVINE 41 (43)
T ss_dssp HHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHhh
Confidence 47999999999999988864
No 39
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.94 E-value=21 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=23.1
Q ss_pred HHHHHHhc----CCHHHHHHHHHHhCCCHHHHH
Q psy13880 215 SLVWKFLQ----LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 215 DLle~Fl~----L~~~~q~~ia~~lg~s~~ei~ 243 (256)
..||.++. .+..++++||.++|.+..+|-
T Consensus 22 ~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~ 54 (77)
T d1vnda_ 22 YELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhCCChhhhh
Confidence 44555544 689999999999999998873
No 40
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.77 E-value=17 Score=23.53 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+.++++++|+++|.+...|.-
T Consensus 46 p~~~~~~~la~~~gl~~~~i~v 67 (80)
T d1wh7a_ 46 HDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp STTHHHHHHHHHSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHCCCHHHeee
Confidence 6888999999999999987753
No 41
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.37 E-value=26 Score=23.08 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.3
Q ss_pred HHHHhc----CCHHHHHHHHHHhCCCHHHHH
Q psy13880 217 VWKFLQ----LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 217 le~Fl~----L~~~~q~~ia~~lg~s~~ei~ 243 (256)
||.++. .+.+++++||+++|.+...|-
T Consensus 42 Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~ 72 (88)
T d1b72a_ 42 LEKEFHFNKYLSRARRVEIAATLELNETQVK 72 (88)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHcCCCHHHee
Confidence 666554 689999999999999988773
No 42
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=33.30 E-value=17 Score=22.63 Aligned_cols=28 Identities=7% Similarity=0.074 Sum_probs=22.0
Q ss_pred HHHHHhc----CCHHHHHHHHHHhCCCHHHHH
Q psy13880 216 LVWKFLQ----LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 216 Lle~Fl~----L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.||.++. .+..++.+||+.+|.+...|-
T Consensus 15 ~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~ 46 (67)
T d1zq3p1 15 ELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46 (67)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCCCcccee
Confidence 3455543 689999999999999988763
No 43
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.64 E-value=26 Score=22.24 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILDEL 246 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~~l 246 (256)
.+..++++||..+|.+..+|.-=.
T Consensus 29 P~~~~r~~LA~~l~l~~~~V~~WF 52 (76)
T d2ecba1 29 LTDEELNRLRAQTKLTRREIDAWF 52 (76)
T ss_dssp CCHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHhH
Confidence 789999999999999999885433
No 44
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.43 E-value=31 Score=21.37 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=22.9
Q ss_pred HHHHHHhc----CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 215 SLVWKFLQ----LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 215 DLle~Fl~----L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
+.|+.++. -+.+++.+||.++|.++..|--
T Consensus 21 ~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~ 54 (67)
T d1ocpa_ 21 WSLETMFLKCPKPSLQQITHIANQLGLEKDVVRV 54 (67)
T ss_dssp HHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHcCCHHHHHH
Confidence 34555554 5889999999999999987743
No 45
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.66 E-value=16 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=22.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhCCCH---HHHHHHHHHH
Q psy13880 215 SLVWKFLQLSLGERLEICKKIGSKH---NDILDELYDI 249 (256)
Q Consensus 215 DLle~Fl~L~~~~q~~ia~~lg~s~---~ei~~~l~~i 249 (256)
++|+.+-.-+.-.|.+||+..|+.. ..|+++=+.|
T Consensus 15 ~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKnK~ki 52 (66)
T d1hlva1 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (66)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred HHHHHHHcCCcchHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 4566665555556899999999854 4555544433
No 46
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=29.15 E-value=10 Score=24.88 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHhCCCHH
Q psy13880 223 LSLGERLEICKKIGSKHN 240 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ 240 (256)
++.+....+|+.+|++++
T Consensus 41 ~s~~~~~kla~~lgvs~~ 58 (87)
T d2icta1 41 LTPEMAIKLSVVIGSSPQ 58 (87)
T ss_dssp CCHHHHHHHHHHTCSCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 344444444444444444
No 47
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=28.53 E-value=17 Score=21.14 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCHHHHHHHH
Q psy13880 228 RLEICKKIGSKHNDILDEL 246 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l 246 (256)
..+||+.+|+++..|.+.|
T Consensus 24 ~~~iA~~~gVSr~TiYry~ 42 (47)
T d1ijwc_ 24 RQQLAIIFGIGVSTLYRYF 42 (47)
T ss_dssp HHHHHHHHTCCHHHHHHHS
T ss_pred HHHHHHHHCcCHHHHHhhC
Confidence 5678888888888877654
No 48
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.51 E-value=29 Score=21.16 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhc
Q psy13880 225 LGERLEICKKIGSKHNDILDELYDIEALS 253 (256)
Q Consensus 225 ~~~q~~ia~~lg~s~~ei~~~l~~i~~~~ 253 (256)
.++=..||+.+|.|++|+++...+|+...
T Consensus 24 ~~RW~~IA~~vgkt~~ev~~~~k~l~e~~ 52 (59)
T d2cqqa1 24 PGRWEKIAHELGRSVTDVTTKAKQLKDSV 52 (59)
T ss_dssp TTHHHHHHHHHTSCHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence 34557899999999999999988887543
No 49
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.46 E-value=33 Score=21.89 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHHhc----CCHHHHHHHHHHhCCCHHHH
Q psy13880 217 VWKFLQ----LSLGERLEICKKIGSKHNDI 242 (256)
Q Consensus 217 le~Fl~----L~~~~q~~ia~~lg~s~~ei 242 (256)
||.++. .+..++.+||..+|.+..+|
T Consensus 28 Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV 57 (77)
T d1pufa_ 28 LEKEFLFNMYLTRDRRYEVARLLNLTERQV 57 (77)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCCCHHHh
Confidence 666654 68999999999999999887
No 50
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.91 E-value=12 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+.+++.++|.++|.+..+|-
T Consensus 23 P~~~~~~~LA~~l~l~~~~V~ 43 (50)
T d1s7ea1 23 PSKELQITISQQLGLELSTVS 43 (50)
T ss_dssp STHHHHHHHHTTSCSSSHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHhh
Confidence 478999999999999888764
No 51
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.88 E-value=26 Score=20.63 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.+||+++|.+..+|-
T Consensus 19 P~~~~~~~LA~~~~ls~~qV~ 39 (52)
T d1x2ma1 19 PDEKRLEGLSKQLDWDVRSIQ 39 (52)
T ss_dssp CCHHHHHHHHHHHCSCHHHHH
T ss_pred cCHHHHHHHHHHHCcCHHHHH
Confidence 467888999999999998874
No 52
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.60 E-value=27 Score=21.69 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+...+++||+++|.+...|-
T Consensus 26 P~~~~r~~LA~~l~L~~~~V~ 46 (68)
T d2cuea1 26 PDVFARERLAAKIDLPEARIQ 46 (68)
T ss_dssp CCHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHhCcChhhee
Confidence 588999999999999988764
No 53
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.59 E-value=1.1e+02 Score=22.20 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=45.0
Q ss_pred CccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeCCCccCCCCCCeeeeeeccccCcccceEeeeecCCCCCCCCCCCCCc
Q psy13880 67 LPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARSR 146 (256)
Q Consensus 67 ~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~p~~~~s~~g~kL~~~~~fhlG~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (256)
..-.++++.|-.++. .+++++.+|.+.++.... ++.....-.+|.+ .|+++. ..|............
T Consensus 161 ~~~~v~~~~~s~~~~--~l~~g~~dg~i~i~d~~~-------~~~~~~~~~~h~~-~v~~~~---~~p~~~~~~~~~~~~ 227 (287)
T d1pgua2 161 LRAKPSYISISPSET--YIAAGDVMGKILLYDLQS-------REVKTSRWAFRTS-KINAIS---WKPAEKGANEEEIEE 227 (287)
T ss_dssp CSSCEEEEEECTTSS--EEEEEETTSCEEEEETTT-------TEEEECCSCCCSS-CEEEEE---ECCCC------CCSC
T ss_pred cCCceeEEEeccCcc--ccccccccccccceeecc-------ccccccccccccc-ccceee---ecccccccccccCCC
Confidence 334688888866665 678899999999987642 1222222334433 345432 222111000111223
Q ss_pred ceEEEEeCCcceEEE
Q psy13880 147 FLTWYASLDGALGFF 161 (256)
Q Consensus 147 ~~ll~~T~~GsIg~l 161 (256)
..++.|+.||.|-+.
T Consensus 228 ~~l~sgs~D~~i~iw 242 (287)
T d1pgua2 228 DLVATGSLDTNIFIY 242 (287)
T ss_dssp CEEEEEETTSCEEEE
T ss_pred CeeEeecCCCeEEEE
Confidence 457788899998765
No 54
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=26.21 E-value=17 Score=22.07 Aligned_cols=35 Identities=6% Similarity=0.074 Sum_probs=28.2
Q ss_pred hHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q psy13880 214 GSLVWKFLQLSLGERLEICKKIGSKHNDILDELYD 248 (256)
Q Consensus 214 GDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~ 248 (256)
-++|.+-|......+.+.|+.+|.+...++++|..
T Consensus 22 r~~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmkk 56 (60)
T d1umqa_ 22 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAK 56 (60)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHCCCHHHHHHHHHH
Confidence 45666667666677888999999999999999874
No 55
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}
Probab=25.86 E-value=1.2e+02 Score=22.32 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=34.0
Q ss_pred eEEEEEEEcCCeeEEEEEeC-CCcEEEEeeCCCccCCCCCCeeeeeeccccCcccceEe
Q psy13880 71 VYACEFVIESSSMGFMISDK-DKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFF 128 (256)
Q Consensus 71 vta~~fL~~~~~l~~l~aD~-~gNl~vl~~~p~~~~s~~g~kL~~~~~fhlG~~v~~~~ 128 (256)
+..+.|-.+++ .++++.. ++.+.+++.|++ ..+|+..+.+.+|+...++.
T Consensus 278 p~~~a~spDGk--~l~va~~~~~~v~v~~id~~------tG~l~~~~~~~~g~~p~~v~ 328 (333)
T d1ri6a_ 278 PRGFNVDHSGK--YLIAAGQKSHHISVYEIVGE------QGLLHEKGRYAVGQGPMWVV 328 (333)
T ss_dssp CCCEEECTTSS--EEEEECTTTCEEEEEEEETT------TTEEEEEEEEECSSSCCEEE
T ss_pred eeEEEEeCCCC--EEEEEECCCCeEEEEEEECC------CCcEEEEEeccCCCCCcEEE
Confidence 33445655665 3445554 466899998754 24889999999998877654
No 56
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.02 E-value=24 Score=21.29 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCHHHHH
Q psy13880 227 ERLEICKKIGSKHNDIL 243 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~ 243 (256)
.|+++|+.+|++...|.
T Consensus 14 tQ~elA~~lGvs~~tvs 30 (62)
T d2ppxa1 14 TQEEFSARYHIPLGTLR 30 (62)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHhCCCHHHHH
Confidence 37899999998876553
No 57
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=25.01 E-value=39 Score=20.37 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 227 ERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 227 ~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.+.+||+.+|.+...|.+-+.++..
T Consensus 14 sr~eLa~~~gls~~TVs~~v~~L~~ 38 (62)
T d2hoea1 14 SRVELAEELGLTKTTVGEIAKIFLE 38 (62)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5789999999998888777777643
No 58
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=24.91 E-value=36 Score=20.60 Aligned_cols=23 Identities=4% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
-.+||+.+|+++.-+.+.+..+.
T Consensus 24 ~~~iA~~L~vs~~SVs~mikrL~ 46 (61)
T d2ev0a1 24 VSDIAEALAVHPSSVTKMVQKLD 46 (61)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhHHHHHHHHH
Confidence 46899999998877666666554
No 59
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.16 E-value=28 Score=21.03 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q psy13880 228 RLEICKKIGSKHNDILDELYD 248 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~ 248 (256)
.++||+.+|+|+..|.+-|.+
T Consensus 3 i~dvA~~agVS~sTVSr~ln~ 23 (57)
T d1qpza1 3 IKDVAKRANVSTTTVSHVINK 23 (57)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHCC
Confidence 478999999998888777653
No 60
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=24.09 E-value=40 Score=21.36 Aligned_cols=25 Identities=12% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
...||+++|.+..+|-+-|..++++
T Consensus 27 A~~LAk~Lg~~Kk~VNr~LY~L~~~ 51 (70)
T d1sfua_ 27 AISLSNRLKINKKKINQQLYKLQKE 51 (70)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 6789999999999999999988764
No 61
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=23.86 E-value=41 Score=20.56 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=22.5
Q ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 222 QLSLGERLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 222 ~L~~~~q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
.-+.-.+.+||+.+|.|...+.+.+.++..
T Consensus 17 ~~g~~sr~eLa~~~glS~~Tv~~~l~~L~~ 46 (71)
T d1z05a1 17 QKGPISRIDLSKESELAPASITKITRELID 46 (71)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455789999999998888777777643
No 62
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=23.79 E-value=37 Score=20.64 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=19.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Q psy13880 229 LEICKKIGSKHNDILDELYDIEAL 252 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~i~~~ 252 (256)
++||+++|.|+..|...+..|...
T Consensus 25 ~eIA~~l~iS~~TV~~~~~~i~~K 48 (67)
T d1a04a1 25 KMIARRLDITESTVKVHVKHMLKK 48 (67)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 689999999998888777776543
No 63
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.86 E-value=34 Score=21.28 Aligned_cols=22 Identities=5% Similarity=0.074 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+.+++.+||+++|.+...|-.
T Consensus 33 P~~~~~~~La~~lgl~~~qV~~ 54 (71)
T d1wi3a_ 33 PDQEAIHTLSAQLDLPKHTIIK 54 (71)
T ss_dssp CCHHHHHHHHHHSCCCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHH
Confidence 6788889999999999988754
No 64
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=22.79 E-value=41 Score=20.36 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=19.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 228 RLEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
-++||+.+|.|+..|...+..|..
T Consensus 22 ~~eIA~~L~is~~TV~~~~~~i~~ 45 (67)
T d1fsea_ 22 TKEIASELFISEKTVRNHISNAMQ 45 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 368999999999888877777654
No 65
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.48 E-value=37 Score=20.80 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+..++.++|.++|.+...|-
T Consensus 27 Ps~~~r~~LA~~lgl~~~~V~ 47 (65)
T d1fjla_ 27 PDIYTREELAQRTNLTEARIQ 47 (65)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CChHHHHHHHHHhCCCHHHhh
Confidence 688999999999999998873
No 66
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.17 E-value=36 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
.+.+++.+||..+|.+...|-
T Consensus 27 Ps~~~r~~LA~~l~L~~~~V~ 47 (68)
T d1ftta_ 27 LSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CCHHHHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHHHhCCCcccee
Confidence 689999999999999998773
No 67
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=21.93 E-value=44 Score=20.14 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhh
Q psy13880 229 LEICKKIGSKHNDILDELYDIEA 251 (256)
Q Consensus 229 ~~ia~~lg~s~~ei~~~l~~i~~ 251 (256)
++||++++.|+..|..-+..+..
T Consensus 23 ~eIA~~l~iS~~TV~~~~~~i~~ 45 (65)
T d1l3la1 23 EEIADVEGVKYNSVRVKLREAMK 45 (65)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 68999999998888777776644
No 68
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=21.56 E-value=25 Score=23.09 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=30.6
Q ss_pred eehHHHHHHhcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy13880 212 IDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 249 (256)
Q Consensus 212 IDGDLle~Fl~L~~~~q~~ia~~lg~s~~ei~~~l~~i 249 (256)
+.-.+|+.-+.-....|.+.|+.+|.++..+.++|...
T Consensus 49 ~E~~~i~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~ 86 (89)
T d1etxa_ 49 VEQPLLDMVMQYTRGNATRAALMMGINRGTLRKKLKKY 86 (89)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHHHh
Confidence 34556666777777778999999999999999999764
No 69
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.53 E-value=50 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHh
Q psy13880 226 GERLEICKKIGSKHNDILDELYDIE 250 (256)
Q Consensus 226 ~~q~~ia~~lg~s~~ei~~~l~~i~ 250 (256)
-+..+||+.+|+++.-+.+.+..|.
T Consensus 24 v~~~~iA~~L~vs~~SVt~mvkrL~ 48 (63)
T d2isya1 24 PLRARIAERLDQSGPTVSQTVSRME 48 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCchhHHHHHHHHH
Confidence 3457899999998877766666554
No 70
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=21.35 E-value=31 Score=21.56 Aligned_cols=17 Identities=6% Similarity=0.016 Sum_probs=14.1
Q ss_pred HHHHHHHhCCCHHHHHH
Q psy13880 228 RLEICKKIGSKHNDILD 244 (256)
Q Consensus 228 q~~ia~~lg~s~~ei~~ 244 (256)
|+++|+.+|++...|.+
T Consensus 17 Q~elA~~LGvs~~ti~~ 33 (67)
T d2auwa1 17 LTTAAEALGISRRMVSY 33 (67)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 78999999999876654
No 71
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.03 E-value=36 Score=20.93 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHhCCCHHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDILD 244 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~~ 244 (256)
.+.+++.+||.++|.+...|-.
T Consensus 28 Ps~~~~~~LA~~l~l~~~~V~~ 49 (66)
T d1bw5a_ 28 PDALMKEQLVEMTGLSPRVIRV 49 (66)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHcCcCHHHhhh
Confidence 5889999999999999988743
No 72
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.81 E-value=37 Score=21.40 Aligned_cols=21 Identities=10% Similarity=-0.040 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHhCCCHHHHH
Q psy13880 223 LSLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 223 L~~~~q~~ia~~lg~s~~ei~ 243 (256)
-+...+++||+++|.+...|-
T Consensus 27 P~~~~r~~LA~~lgL~~~~Vq 47 (72)
T d1uhsa_ 27 PDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHH
Confidence 477899999999999988773
No 73
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=20.29 E-value=34 Score=20.81 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=20.0
Q ss_pred HHHHHHhcC---CHHHHHHHHHHhCCCHHHHH
Q psy13880 215 SLVWKFLQL---SLGERLEICKKIGSKHNDIL 243 (256)
Q Consensus 215 DLle~Fl~L---~~~~q~~ia~~lg~s~~ei~ 243 (256)
++|..++.| .+....+||+.+|.|.+.|.
T Consensus 15 ~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVr 46 (61)
T d1ku3a_ 15 MVLKMRKGLIDGREHTLEEVGAYFGVTRERIR 46 (61)
T ss_dssp HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHCCCHHHHH
Confidence 344555543 33457899999999988774
No 74
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.21 E-value=1.5e+02 Score=21.49 Aligned_cols=74 Identities=14% Similarity=0.093 Sum_probs=43.4
Q ss_pred CccceEEEEEEEcCCeeEEEEEeCCCcEEEEeeCCCccCCCCCCeeeeeeccccCcccceEeeeecCCCCCCCCCCCCCc
Q psy13880 67 LPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARSR 146 (256)
Q Consensus 67 ~~~~vta~~fL~~~~~l~~l~aD~~gNl~vl~~~p~~~~s~~g~kL~~~~~fhlG~~v~~~~~~~~~~~~~~~~~~~~~~ 146 (256)
+...|+++.|-.+++ .++++..++.+.++..... +.+......+....|+++ ...| ..
T Consensus 225 h~~~i~~v~~~p~~~--~l~s~s~d~~i~~~~~~~~-------~~~~~~~~~~~~~~i~~~---~~s~----------~~ 282 (340)
T d1tbga_ 225 HESDINAICFFPNGN--AFATGSDDATCRLFDLRAD-------QELMTYSHDNIICGITSV---SFSK----------SG 282 (340)
T ss_dssp CSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTT-------EEEEEECCTTCCSCEEEE---EECS----------SS
T ss_pred CCCCeEEEEECCCCC--EEEEEeCCCeEEEEeeccc-------ccccccccccccCceEEE---EECC----------CC
Confidence 344688888866655 5778888999998876432 122222223333333332 2221 12
Q ss_pred ceEEEEeCCcceEEEE
Q psy13880 147 FLTWYASLDGALGFFL 162 (256)
Q Consensus 147 ~~ll~~T~~GsIg~l~ 162 (256)
..++.|+.+|.|-+.-
T Consensus 283 ~~l~~g~~dg~i~iwd 298 (340)
T d1tbga_ 283 RLLLAGYDDFNCNVWD 298 (340)
T ss_dssp CEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCEEEEEE
Confidence 4577888899987653
Done!