Your job contains 1 sequence.
>psy13880
ETIVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKGTLKLRFKKLKVLFVSDRSKR
ANEQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHL
GQHVNTFFKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMV
THTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHN
DILDELYDIEALSSHF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13880
(256 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0024698 - symbol:Cpsf160 "Cleavage and polyadenyla... 479 1.9e-54 2
UNIPROTKB|K7GNU1 - symbol:CPSF1 "Uncharacterized protein"... 456 7.1e-50 2
UNIPROTKB|F1RSN8 - symbol:CPSF1 "Uncharacterized protein"... 456 8.7e-49 2
UNIPROTKB|J9P418 - symbol:CPSF1 "Uncharacterized protein"... 452 1.8e-48 2
RGD|1306406 - symbol:Cpsf1 "cleavage and polyadenylation ... 454 2.7e-48 2
MGI|MGI:2679722 - symbol:Cpsf1 "cleavage and polyadenylat... 454 3.1e-48 2
UNIPROTKB|F1PC28 - symbol:CPSF1 "Uncharacterized protein"... 452 4.6e-48 2
UNIPROTKB|Q10569 - symbol:CPSF1 "Cleavage and polyadenyla... 452 6.6e-48 2
UNIPROTKB|Q10570 - symbol:CPSF1 "Cleavage and polyadenyla... 446 2.2e-47 2
ZFIN|ZDB-GENE-040709-2 - symbol:cpsf1 "cleavage and polya... 446 1.6e-46 2
WB|WBGene00022301 - symbol:cpsf-1 species:6239 "Caenorhab... 294 2.7e-26 2
UNIPROTKB|Q9N4C2 - symbol:cpsf-1 "Probable cleavage and p... 294 2.7e-26 2
TAIR|locus:2153122 - symbol:CPSF160 "cleavage and polyade... 292 2.6e-24 1
POMBASE|SPBC1709.08 - symbol:cft1 "cleavage factor one Cf... 249 1.0e-19 1
ASPGD|ASPL0000050546 - symbol:AN1413 species:162425 "Emer... 199 6.7e-17 2
SGD|S000002709 - symbol:CFT1 "RNA-binding subunit of the ... 181 1.6e-12 1
DICTYBASE|DDB_G0281585 - symbol:cpsf1 "cleavage and polya... 136 1.6e-10 3
CGD|CAL0004251 - symbol:orf19.2760 species:5476 "Candida ... 133 1.4e-05 1
UNIPROTKB|Q5AFT3 - symbol:CFT1 "Protein CFT1" species:237... 133 1.4e-05 1
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ... 130 2.5e-05 1
>FB|FBgn0024698 [details] [associations]
symbol:Cpsf160 "Cleavage and polyadenylation specificity
factor 160" species:7227 "Drosophila melanogaster" [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS;NAS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS;NAS] [GO:0006379 "mRNA cleavage" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 EMBL:AE013599 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:AF241364
EMBL:AF241365 EMBL:AF241366 EMBL:AY051896 RefSeq:NP_725397.1
RefSeq:NP_995833.1 UniGene:Dm.3414 ProteinModelPortal:Q9V726
STRING:Q9V726 PaxDb:Q9V726 PRIDE:Q9V726 EnsemblMetazoa:FBtr0089258
GeneID:44250 KEGG:dme:Dmel_CG10110 CTD:44250 FlyBase:FBgn0024698
InParanoid:Q9V726 OrthoDB:EOG4ZCRK8 PhylomeDB:Q9V726
GenomeRNAi:44250 NextBio:837008 Bgee:Q9V726 GermOnline:CG10110
Uniprot:Q9V726
Length = 1455
Score = 479 (173.7 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 89/191 (46%), Positives = 133/191 (69%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY EF++++S++GF+++D ++N++++MYQPEARES GG +L++K D+HLGQ VNT
Sbjct: 1265 PLEVYGIEFMVDNSNLGFLVTDAERNIIVYMYQPEARESLGGQKLLRKADYHLGQVVNTM 1324
Query: 128 FKIRCKPSPISDA-PGA-RSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSH 185
F+++C + P ++ Y +LDGALG+ LPLPEK YRR LMLQNV++++ H
Sbjct: 1325 FRVQCHQKGLHQRQPFLYENKHFVVYGTLDGALGYCLPLPEKVYRRFLMLQNVLLSYQEH 1384
Query: 186 TGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDE 245
GLNP+ +RT K NPSR IIDG L+W + ++ ER E+ KKIG++ +IL +
Sbjct: 1385 LCGLNPKEYRTLKSSKKQGINPSRCIIDGDLIWSYRLMANSERNEVAKKIGTRTEEILGD 1444
Query: 246 LYDIEALSSHF 256
L +IE L+S F
Sbjct: 1445 LLEIERLASVF 1455
Score = 127 (49.8 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 6 ELLTVSLGLHGNRPLLLVRTQHELLIYQAFRHPKG 40
EL + LGL+G RPLLLVRT+ ELLIYQ FR+PKG
Sbjct: 864 ELSVIGLGLNGERPLLLVRTRVELLIYQVFRYPKG 898
>UNIPROTKB|K7GNU1 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GeneTree:ENSGT00550000075040 EMBL:CU468594
Ensembl:ENSSSCT00000033207 Uniprot:K7GNU1
Length = 757
Score = 456 (165.6 bits), Expect = 7.1e-50, Sum P(2) = 7.1e-50
Identities = 85/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 566 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 625
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + +D P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 626 WRTPCRGA--TDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 683
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 684 LPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDII 743
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 744 LDDLLETDRVTAHF 757
Score = 92 (37.4 bits), Expect = 7.1e-50, Sum P(2) = 7.1e-50
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG RP LLV ELLIY+AF H
Sbjct: 159 LVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPH 193
>UNIPROTKB|F1RSN8 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0006378 GO:GO:0003730 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY
EMBL:CU468594 Ensembl:ENSSSCT00000006486 Uniprot:F1RSN8
Length = 1108
Score = 456 (165.6 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 85/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 917 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 976
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + +D P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 977 WRTPCRGA--TDGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1034
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1035 LPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDII 1094
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1095 LDDLLETDRVTAHF 1108
Score = 92 (37.4 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG RP LLV ELLIY+AF H
Sbjct: 510 LVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPH 544
>UNIPROTKB|J9P418 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 GO:GO:0003676
GeneTree:ENSGT00550000075040 EMBL:AAEX03008966
Ensembl:ENSCAFT00000043656 Uniprot:J9P418
Length = 1107
Score = 452 (164.2 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 84/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 916 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 975
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 976 WRTPCRGA--AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1033
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1034 LPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDII 1093
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1094 LDDLLETDRVTAHF 1107
Score = 93 (37.8 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG +RP LLV ELLIY+AF H
Sbjct: 509 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPH 543
>RGD|1306406 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor 1,
160kDa" species:10116 "Rattus norvegicus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISO]
[GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO] [GO:0006379
"mRNA cleavage" evidence=IEA;ISO] InterPro:IPR004871 Pfam:PF03178
RGD:1306406 GO:GO:0005634 GO:GO:0003676 EMBL:CH473950 KO:K14401
GeneTree:ENSGT00550000075040 CTD:29894 IPI:IPI00949657
RefSeq:NP_001124043.1 UniGene:Rn.40455 Ensembl:ENSRNOT00000066244
GeneID:366952 KEGG:rno:366952 UCSC:RGD:1306406 NextBio:690318
Uniprot:D4A0H5
Length = 1386
Score = 454 (164.9 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 84/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1195 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1254
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1255 WRTPCRGA--AEGPSKKSVMWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1312
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1313 LPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDII 1372
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1373 LDDLLETDRVTAHF 1386
Score = 93 (37.8 bits), Expect = 2.7e-48, Sum P(2) = 2.7e-48
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG +RP LLV ELLIY+AF H
Sbjct: 839 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPH 873
>MGI|MGI:2679722 [details] [associations]
symbol:Cpsf1 "cleavage and polyadenylation specific factor
1" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 MGI:MGI:2679722 GO:GO:0006378
GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847 GO:GO:0006379
GeneTree:ENSGT00550000075040 OMA:NIGDNRY CTD:29894
HOGENOM:HOG000007904 HOVERGEN:HBG051105 OrthoDB:EOG4BCDM3
EMBL:AF322193 EMBL:BC056388 IPI:IPI00110363 RefSeq:NP_001157645.1
RefSeq:NP_444423.1 UniGene:Mm.45141 ProteinModelPortal:Q9EPU4
STRING:Q9EPU4 PhosphoSite:Q9EPU4 PaxDb:Q9EPU4 PRIDE:Q9EPU4
Ensembl:ENSMUST00000071898 GeneID:94230 KEGG:mmu:94230
UCSC:uc007wky.2 InParanoid:Q9EPU4 NextBio:352239 Bgee:Q9EPU4
CleanEx:MM_CPSF1 Genevestigator:Q9EPU4
GermOnline:ENSMUSG00000034022 Uniprot:Q9EPU4
Length = 1441
Score = 454 (164.9 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 84/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1250 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1309
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1310 WRTPCRGA--AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1367
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1368 LPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDII 1427
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1428 LDDLLETDRVTAHF 1441
Score = 93 (37.8 bits), Expect = 3.1e-48, Sum P(2) = 3.1e-48
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG +RP LLV ELLIY+AF H
Sbjct: 843 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPH 877
>UNIPROTKB|F1PC28 [details] [associations]
symbol:CPSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0006378 GO:GO:0003730
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY EMBL:AAEX03008966 ProteinModelPortal:F1PC28
Ensembl:ENSCAFT00000002514 Uniprot:F1PC28
Length = 1398
Score = 452 (164.2 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
Identities = 84/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1207 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1266
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1267 WRTPCRGA--AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1324
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1325 LPHHAGLNPRAFRMLHVDRRILQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDII 1384
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1385 LDDLLETDRVTAHF 1398
Score = 93 (37.8 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG +RP LLV ELLIY+AF H
Sbjct: 800 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPH 834
>UNIPROTKB|Q10569 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
GO:GO:0006378 GO:GO:0003730 eggNOG:COG5161 KO:K14401 GO:GO:0005847
GO:GO:0006379 GeneTree:ENSGT00550000075040 OMA:NIGDNRY EMBL:X83097
IPI:IPI00713487 PIR:S57335 RefSeq:NP_777145.1 UniGene:Bt.4911
STRING:Q10569 PRIDE:Q10569 Ensembl:ENSBTAT00000011004 GeneID:282703
KEGG:bta:282703 CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
InParanoid:Q10569 OrthoDB:EOG4BCDM3 NextBio:20806363
ArrayExpress:Q10569 Uniprot:Q10569
Length = 1444
Score = 452 (164.2 bits), Expect = 6.6e-48, Sum P(2) = 6.6e-48
Identities = 84/194 (43%), Positives = 133/194 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1253 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1312
Query: 128 FKIRCKPSPISDAPGARS-----RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTH 182
++ C+ + ++ P +S + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1313 WRTPCRGA--AEGPSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTM 1370
Query: 183 TSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDI 242
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + I
Sbjct: 1371 LPHHAGLNPRAFRMLHVDRRVLQNAVRNVLDGELLNRYLYLSTMERGELAKKIGTTPDII 1430
Query: 243 LDELYDIEALSSHF 256
LD+L + + +++HF
Sbjct: 1431 LDDLLETDRVTAHF 1444
Score = 92 (37.4 bits), Expect = 6.6e-48, Sum P(2) = 6.6e-48
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG RP LLV ELLIY+AF H
Sbjct: 846 LVKEVLLVALGSRQRRPYLLVHVDQELLIYEAFPH 880
>UNIPROTKB|Q10570 [details] [associations]
symbol:CPSF1 "Cleavage and polyadenylation specificity
factor subunit 1" species:9606 "Homo sapiens" [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006406 "mRNA
export from nucleus" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR004871 Pfam:PF03178
Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003730 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
OMA:NIGDNRY CTD:29894 HOGENOM:HOG000007904 HOVERGEN:HBG051105
OrthoDB:EOG4BCDM3 EMBL:U37012 EMBL:BC017232 IPI:IPI00026219
RefSeq:NP_037423.2 UniGene:Hs.493202 ProteinModelPortal:Q10570
DIP:DIP-32694N IntAct:Q10570 MINT:MINT-1601544 STRING:Q10570
PhosphoSite:Q10570 DMDM:23503048 PaxDb:Q10570 PeptideAtlas:Q10570
PRIDE:Q10570 DNASU:29894 Ensembl:ENST00000349769
Ensembl:ENST00000568627 GeneID:29894 KEGG:hsa:29894 UCSC:uc003zcj.3
GeneCards:GC08M145618 HGNC:HGNC:2324 MIM:606027 neXtProt:NX_Q10570
PharmGKB:PA26841 InParanoid:Q10570 PhylomeDB:Q10570 ChiTaRS:CPSF1
GenomeRNAi:29894 NextBio:52452 ArrayExpress:Q10570 Bgee:Q10570
CleanEx:HS_CPSF1 Genevestigator:Q10570 GermOnline:ENSG00000071894
Uniprot:Q10570
Length = 1443
Score = 446 (162.1 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 83/192 (43%), Positives = 131/192 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ +F+++++ +GF++SD+D+N++++MY PEA+ES GG RL+++ DFH+G HVNTF
Sbjct: 1252 PLEVYSVDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTF 1311
Query: 128 FKIRCKPSP--ISDAPGA-RSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTS 184
++ C+ + +S ++ +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1312 WRTPCRGATEGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYRRLLMLQNALTTMLP 1371
Query: 185 HTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILD 244
H GLNPRAFR N R ++DG L+ ++L LS ER E+ KKIG+ + ILD
Sbjct: 1372 HHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILD 1431
Query: 245 ELYDIEALSSHF 256
+L + + +++HF
Sbjct: 1432 DLLETDRVTAHF 1443
Score = 93 (37.8 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAFRH 37
+V+E+L V+LG +RP LLV ELLIY+AF H
Sbjct: 845 LVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPH 879
>ZFIN|ZDB-GENE-040709-2 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation specific
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0060216
"definitive hemopoiesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 ZFIN:ZDB-GENE-040709-2 GO:GO:0005634 GO:GO:0006378
GO:GO:0003676 GeneTree:ENSGT00550000075040 GO:GO:0060216
EMBL:CU467825 IPI:IPI00932321 Ensembl:ENSDART00000110017
ArrayExpress:F1QCJ8 Bgee:F1QCJ8 Uniprot:F1QCJ8
Length = 1451
Score = 446 (162.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 85/192 (44%), Positives = 132/192 (68%)
Query: 68 PRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTF 127
P VY+ EF+++++ +GF++SD+DKN++++MY PEA+ES GG RL+++ DF++G HVN F
Sbjct: 1260 PLEVYSIEFMVDNNQLGFLVSDRDKNLMVYMYLPEAKESFGGMRLLRRADFNVGSHVNAF 1319
Query: 128 FKIRCKPSPISDAPGARS---RFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTS 184
+++ C+ + + A + + +TW+A+LDG +G LP+ EK YRRLLMLQN + T
Sbjct: 1320 WRMPCRGTLDTANKKALTWDNKHITWFATLDGGVGLLLPMQEKTYRRLLMLQNALTTMLP 1379
Query: 185 HTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILD 244
H GLNP+AFR N + I+DG L+ K+L LS ER E+ KKIG+ + ILD
Sbjct: 1380 HHAGLNPKAFRMLHCDRRTLQNAVKNILDGELLNKYLYLSTMERSELAKKIGTTPDIILD 1439
Query: 245 ELYDIEALSSHF 256
+L +IE +++HF
Sbjct: 1440 DLLEIERVTAHF 1451
Score = 85 (35.0 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 3 IVQELLTVSLGLHGNRPLLLVRTQHELLIYQAF 35
+V+E+ VSLG + +RP LL + ELLIY+AF
Sbjct: 853 LVKEVALVSLGYNHSRPYLLAHVEQELLIYEAF 885
>WB|WBGene00022301 [details] [associations]
symbol:cpsf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 294 (108.6 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 62/190 (32%), Positives = 109/190 (57%)
Query: 73 ACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRC 132
A + V++ + +GF++SD+ N+ +F Y PEA ESNGG RL + ++G ++N F ++R
Sbjct: 1265 ASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNINAFVRLRG 1324
Query: 133 KPSPIS-----DAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTG 187
S + + R T +ASLDG+ GF PL EK+YRRL LQ + + T
Sbjct: 1325 HTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFIGSVTPQIA 1384
Query: 188 GLNPRAFRTYK-GKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEL 246
GL+ + R+ K + G +R +IDG +V ++L LSL ++ ++ +++G I+D+L
Sbjct: 1385 GLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDL 1444
Query: 247 YDIEALSSHF 256
+ ++ ++
Sbjct: 1445 MQLRRMAFYY 1454
Score = 46 (21.3 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 4 VQELLTVSLGLHGNRPLLLVRTQHELLIYQAF 35
V E V +G++ P+L+ ++++Y+ F
Sbjct: 853 VLEAQIVGMGINQAHPILMAIVDEQVVLYEMF 884
>UNIPROTKB|Q9N4C2 [details] [associations]
symbol:cpsf-1 "Probable cleavage and polyadenylation
specificity factor subunit 1" species:6239 "Caenorhabditis elegans"
[GO:0006378 "mRNA polyadenylation" evidence=NAS] [GO:0006379 "mRNA
cleavage" evidence=NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=NAS]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006378 GO:GO:0010171 GO:GO:0040018
GO:GO:0000003 GO:GO:0003723 GO:GO:0040027 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 GeneTree:ENSGT00550000075040
OMA:NIGDNRY HOGENOM:HOG000007904 EMBL:FO081666 RefSeq:NP_500157.2
ProteinModelPortal:Q9N4C2 MINT:MINT-3384281 STRING:Q9N4C2
PaxDb:Q9N4C2 EnsemblMetazoa:Y76B12C.7.1 EnsemblMetazoa:Y76B12C.7.2
GeneID:177003 KEGG:cel:CELE_Y76B12C.7 CTD:177003 WormBase:Y76B12C.7
InParanoid:Q9N4C2 NextBio:894932 Uniprot:Q9N4C2
Length = 1454
Score = 294 (108.6 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 62/190 (32%), Positives = 109/190 (57%)
Query: 73 ACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRC 132
A + V++ + +GF++SD+ N+ +F Y PEA ESNGG RL + ++G ++N F ++R
Sbjct: 1265 ASQLVVDGAHVGFLLSDETGNITMFNYAPEAPESNGGERLTVRAAINIGTNINAFVRLRG 1324
Query: 133 KPSPIS-----DAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTG 187
S + + R T +ASLDG+ GF PL EK+YRRL LQ + + T
Sbjct: 1325 HTSLLQLNNEDEKEAIEQRMTTVFASLDGSFGFVRPLTEKSYRRLHFLQTFIGSVTPQIA 1384
Query: 188 GLNPRAFRTYK-GKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDEL 246
GL+ + R+ K + G +R +IDG +V ++L LSL ++ ++ +++G I+D+L
Sbjct: 1385 GLHIKGSRSAKPSQPIVNGRNARNLIDGDVVEQYLHLSLYDKTDLARRLGVGRYHIIDDL 1444
Query: 247 YDIEALSSHF 256
+ ++ ++
Sbjct: 1445 MQLRRMAFYY 1454
Score = 46 (21.3 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 4 VQELLTVSLGLHGNRPLLLVRTQHELLIYQAF 35
V E V +G++ P+L+ ++++Y+ F
Sbjct: 853 VLEAQIVGMGINQAHPILMAIVDEQVVLYEMF 884
>TAIR|locus:2153122 [details] [associations]
symbol:CPSF160 "cleavage and polyadenylation specificity
factor 160" species:3702 "Arabidopsis thaliana" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009909 "regulation
of flower development" evidence=RCA] [GO:0016570 "histone
modification" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0005829
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AY140902 EMBL:AB025607
EMBL:AB018109 IPI:IPI00533913 RefSeq:NP_199979.2 UniGene:At.43551
IntAct:Q9FGR0 STRING:Q9FGR0 PaxDb:Q9FGR0 PRIDE:Q9FGR0
EnsemblPlants:AT5G51660.1 GeneID:835240 KEGG:ath:AT5G51660
TAIR:At5g51660 HOGENOM:HOG000265012 InParanoid:Q9FGR0 OMA:NIGDNRY
PhylomeDB:Q9FGR0 ProtClustDB:CLSN2680511 Genevestigator:Q9FGR0
GermOnline:AT5G51660 Uniprot:Q9FGR0
Length = 1442
Score = 292 (107.8 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 62/183 (33%), Positives = 101/183 (55%)
Query: 72 YACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIR 131
+A EF+I+ S++ +SD+ KN+ +F Y P+ ES G +L+ + +FH+G HV+ F +++
Sbjct: 1262 FATEFLIDGSTLSLAVSDEQKNIQVFYYAPKMIESWKGLKLLSRAEFHVGAHVSKFLRLQ 1321
Query: 132 CKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNP 191
+S +RF + +LDG+ G PL E +RRL LQ +V H GLNP
Sbjct: 1322 M----VSSGADKINRFALLFGTLDGSFGCIAPLDEVTFRRLQSLQKKLVDAVPHVAGLNP 1377
Query: 192 RAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDIEA 251
AFR ++ G + I+D L+ + L L E+LE+ +IG+ IL +L D+
Sbjct: 1378 LAFRQFRSSGKARRSGPDSIVDCELLCHYEMLPLEEQLELAHQIGTTRYSILKDLVDLSV 1437
Query: 252 LSS 254
+S
Sbjct: 1438 GTS 1440
>POMBASE|SPBC1709.08 [details] [associations]
symbol:cft1 "cleavage factor one Cft1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
PomBase:SPBC1709.08 GO:GO:0005829 EMBL:CU329671 GO:GO:0006378
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG5161 KO:K14401
OMA:HNDRIFQ OrthoDB:EOG451HZS PIR:T39636 RefSeq:NP_595441.1
STRING:O74733 EnsemblFungi:SPBC1709.08.1 GeneID:2539694
KEGG:spo:SPBC1709.08 NextBio:20800847 GO:GO:0005847 GO:GO:0006379
Uniprot:O74733
Length = 1441
Score = 249 (92.7 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 60/187 (32%), Positives = 100/187 (53%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V A +F+++ ++ F+++D N+ L Y PE ES+ G RL+ + DFH+G +V T I
Sbjct: 1255 VSAADFLVQGENLYFVVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIG-NVITAMTI 1313
Query: 131 RCKPSPISDAP---GARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTG 187
K +A F + DG L +P+ ++ YRRL ++QN + + G
Sbjct: 1314 LPKEKKHQNAEYGYDTGDDFSCVMVNSDGGLQMLVPISDRVYRRLNIIQNYLANRVNTIG 1373
Query: 188 GLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELY 247
GLNP+++R NP+R I+DG L+ F +S+ R E+ K G + I+++L
Sbjct: 1374 GLNPKSYRLITSPSNLT-NPTRRILDGMLIDYFTYMSVAHRHEMAHKCGVPVSTIMNDLV 1432
Query: 248 DI-EALS 253
++ EALS
Sbjct: 1433 ELDEALS 1439
>ASPGD|ASPL0000050546 [details] [associations]
symbol:AN1413 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 GO:GO:0005634 EMBL:BN001307 GO:GO:0006397
GO:GO:0003723 eggNOG:COG5161 KO:K14401 EMBL:AACD01000022
RefSeq:XP_659017.1 EnsemblFungi:CADANIAT00008024 GeneID:2875502
KEGG:ani:AN1413.2 HOGENOM:HOG000048586 OMA:HNDRIFQ
OrthoDB:EOG451HZS Uniprot:Q5BDG7
Length = 1339
Score = 199 (75.1 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 55/192 (28%), Positives = 98/192 (51%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKI 130
V A +F+ + + + +++D D N+ + Y PE S+ G +L+ ++ FH G +T +
Sbjct: 1148 VLAADFLPDGNKLFIVVADSDCNLYVLQYDPEDPNSSNGDKLLNRSKFHTGNFASTVTLL 1207
Query: 131 -RCKPSPISDAPGARSRFLTWYASL--------DGALGFFLPLPEKNYRRLLMLQNVMVT 181
R S G+ + A L +G++G +PE++YRRL LQ+ +
Sbjct: 1208 PRTLVSSERAMSGSDKMDIDNTAPLHQVLVTSHNGSIGLVTCVPEESYRRLSALQSQLTN 1267
Query: 182 HTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSKHND 241
H GLNPRA+R + AG RG++D +L+ ++L +S + EI ++G+ +
Sbjct: 1268 TLEHPCGLNPRAYRAVESDAS-AG---RGMLDSNLLLQYLDMSKQRKAEIAGRVGATEWE 1323
Query: 242 ILDELYDIEALS 253
I D+EA+S
Sbjct: 1324 IRA---DLEAIS 1332
Score = 51 (23.0 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 1 ETIVQELLTVSLG-LHGNRPLLLVRTQHE-LLIYQAF 35
E ++Q + V LG + + P L++RT+++ L++Y+ F
Sbjct: 757 ENVLQ-IAVVELGDSYSSLPFLILRTENDDLVVYKPF 792
>SGD|S000002709 [details] [associations]
symbol:CFT1 "RNA-binding subunit of the mRNA cleavage and
polyadenylation factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA;IPI]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IMP] [GO:0006378 "mRNA polyadenylation" evidence=IDA;TAS]
[GO:0006379 "mRNA cleavage" evidence=IDA;TAS] [GO:0005849 "mRNA
cleavage factor complex" evidence=IPI] InterPro:IPR004871
Pfam:PF03178 SGD:S000002709 GO:GO:0005739 GO:GO:0006378
EMBL:BK006938 GO:GO:0003723 EMBL:U28374 eggNOG:COG5161 KO:K14401
OMA:HNDRIFQ GO:GO:0005847 GO:GO:0006379 PIR:S61187
RefSeq:NP_010587.1 ProteinModelPortal:Q06632 DIP:DIP-2467N
IntAct:Q06632 MINT:MINT-375530 STRING:Q06632 PaxDb:Q06632
PeptideAtlas:Q06632 EnsemblFungi:YDR301W GeneID:851895
KEGG:sce:YDR301W CYGD:YDR301w GeneTree:ENSGT00550000075040
HOGENOM:HOG000246682 OrthoDB:EOG4D29XZ NextBio:969889
Genevestigator:Q06632 GermOnline:YDR301W GO:GO:0006369
Uniprot:Q06632
Length = 1357
Score = 181 (68.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 50/177 (28%), Positives = 85/177 (48%)
Query: 75 EFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFKIRCKP 134
EF++ M F +D D+NV + Y P+ S G RL+ + F L N+ + +
Sbjct: 1175 EFLVNGGDMYFAATDADRNVHVLKYAPDEPNSLSGQRLVHCSSFTL-HSTNSCMMLLPRN 1233
Query: 135 SPISDAPGARSRFLTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAF 194
+P S F +DG++ +PL E+ YRRL ++Q ++ GGLNPR
Sbjct: 1234 EEFG-SPQVPS-FQNVGGQVDGSVFKIVPLSEEKYRRLYVIQQQIIDRELQLGGLNPRME 1291
Query: 195 RTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKIGSK-HNDILDELYDIE 250
R Y G+ R ++D +++ +F L++ R I +K G H + ++ +IE
Sbjct: 1292 RL-ANDFYQMGHSMRPMLDFNVIRRFCGLAIDRRKSIAQKAGRHAHFEAWRDIINIE 1347
>DICTYBASE|DDB_G0281585 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation
specificity factor 160 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] InterPro:IPR004871 Pfam:PF03178
dictyBase:DDB_G0281585 GenomeReviews:CM000152_GR GO:GO:0006378
EMBL:AAFI02000042 GO:GO:0003730 eggNOG:COG5161 KO:K14401
GO:GO:0005847 GO:GO:0006379 RefSeq:XP_640515.1
EnsemblProtists:DDB0233702 GeneID:8623125 KEGG:ddi:DDB_G0281585
InParanoid:Q54TS6 OMA:TSATIQD Uniprot:Q54TS6
Length = 1628
Score = 136 (52.9 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 148 LTWYASLDGALGFFLPLPEKNYRRLLMLQNVMVTHTSHTGGLNPRAFRTYKGKGY-YAGN 206
L + +LDG L PL EK Y +Q+ + + T GLNP+ +R++K + +
Sbjct: 1514 LVIFGTLDGGLNVLRPLDEKIYLLFYHIQSKLY-YLPQTAGLNPKQYRSFKSFSQNFHFS 1572
Query: 207 PS------RGIIDGSLVWKFLQLSLGERLEICKKIGSKHNDILDELYDI 249
PS + I+DG L+ KFL LS E+ I I S ++I++ L D+
Sbjct: 1573 PSTFHQLPKFILDGDLISKFLSLSQSEKRLISNSINSTSDEIIESLKDV 1621
Score = 89 (36.4 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGG 109
+++ EF++ ++ ++SD DKN++LF ++P+ S G
Sbjct: 1454 IFSTEFIVNQKTLSILVSDLDKNILLFSFEPQDPSSRSG 1492
Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 4 VQELLTVSL-GLHGNRPLLLVRTQ-HELLIYQAFRHPK 39
+ +++ +SL + + P L + + +L+IY++F+ K
Sbjct: 1024 ILDIVEISLHNFNNSDPYLFMFNKIGDLIIYKSFKREK 1061
>CGD|CAL0004251 [details] [associations]
symbol:orf19.2760 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004871
Pfam:PF03178 CGD:CAL0004251 GO:GO:0005634 GO:GO:0042493
GO:GO:0006397 GO:GO:0003723 EMBL:AACQ01000023 EMBL:AACQ01000025
RefSeq:XP_720278.1 RefSeq:XP_720279.1 RefSeq:XP_720280.1
RefSeq:XP_720510.1 STRING:Q5AFT3 GeneID:3637848 GeneID:3638158
GeneID:3638159 GeneID:3638160 KEGG:cal:CaO19.10274
KEGG:cal:CaO19.10275 KEGG:cal:CaO19.10276 KEGG:cal:CaO19.2760
eggNOG:COG5161 KO:K14401 Uniprot:Q5AFT3
Length = 1420
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/197 (24%), Positives = 82/197 (41%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFK- 129
V +F+I + +++D + + L Y P+ +S G +L+ K F L ++
Sbjct: 1218 VECADFIINDDEIFVLVADNNNVLHLLNYDPDDPQSINGTKLLTKASFELNSTISCLRSL 1277
Query: 130 --IRCKPSPISDA-----------PGARSRFLTWYASL-DGALGFFLPLPEKNYRRLLML 175
I + S +DA P S + S DG+ P+ E YRR+ +L
Sbjct: 1278 PLIDIEESVQTDALTNIAVPPPLPPNTTSNYFQVIGSTQDGSFFNVFPINEAAYRRMYIL 1337
Query: 176 QNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKI 235
Q ++ H GLNPR R K ++ I+D L+ F +LS + + K+
Sbjct: 1338 QQQLIDKEFHYCGLNPRLNRIGSIKLQNNETNTKPILDYDLIRSFTKLSDDRKRNLANKV 1397
Query: 236 GSK--HNDILDELYDIE 250
K + DI ++ E
Sbjct: 1398 SGKGIYQDIWKDIIRFE 1414
>UNIPROTKB|Q5AFT3 [details] [associations]
symbol:CFT1 "Protein CFT1" species:237561 "Candida albicans
SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR004871 Pfam:PF03178 CGD:CAL0004251 GO:GO:0005634
GO:GO:0042493 GO:GO:0006397 GO:GO:0003723 EMBL:AACQ01000023
EMBL:AACQ01000025 RefSeq:XP_720278.1 RefSeq:XP_720279.1
RefSeq:XP_720280.1 RefSeq:XP_720510.1 STRING:Q5AFT3 GeneID:3637848
GeneID:3638158 GeneID:3638159 GeneID:3638160 KEGG:cal:CaO19.10274
KEGG:cal:CaO19.10275 KEGG:cal:CaO19.10276 KEGG:cal:CaO19.2760
eggNOG:COG5161 KO:K14401 Uniprot:Q5AFT3
Length = 1420
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/197 (24%), Positives = 82/197 (41%)
Query: 71 VYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIKKTDFHLGQHVNTFFK- 129
V +F+I + +++D + + L Y P+ +S G +L+ K F L ++
Sbjct: 1218 VECADFIINDDEIFVLVADNNNVLHLLNYDPDDPQSINGTKLLTKASFELNSTISCLRSL 1277
Query: 130 --IRCKPSPISDA-----------PGARSRFLTWYASL-DGALGFFLPLPEKNYRRLLML 175
I + S +DA P S + S DG+ P+ E YRR+ +L
Sbjct: 1278 PLIDIEESVQTDALTNIAVPPPLPPNTTSNYFQVIGSTQDGSFFNVFPINEAAYRRMYIL 1337
Query: 176 QNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGERLEICKKI 235
Q ++ H GLNPR R K ++ I+D L+ F +LS + + K+
Sbjct: 1338 QQQLIDKEFHYCGLNPRLNRIGSIKLQNNETNTKPILDYDLIRSFTKLSDDRKRNLANKV 1397
Query: 236 GSK--HNDILDELYDIE 250
K + DI ++ E
Sbjct: 1398 SGKGIYQDIWKDIIRFE 1414
>CGD|CAL0004426 [details] [associations]
symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
Length = 1219
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/146 (28%), Positives = 69/146 (47%)
Query: 110 HRLIKKTDFHLGQHVNTFFKIRCKPSPISDAPGARSRFLTWYASLDGALGFFLPLPEKNY 169
++L +FH+G + T F + C + G S Y L G +G +PL K+
Sbjct: 1089 YKLQNLIEFHIGDII-TSFNLGCL-----NLAGTESVI---YTGLQGTIGLLIPLVSKSE 1139
Query: 170 RRLLM-LQNVMVTHTSHTGGLNPRAFRTYKGKGYYAGNPSRGIIDGSLVWKFLQLSLGER 228
LL LQ M ++ G + R+Y Y NP + +IDG L+ +FL+ + +
Sbjct: 1140 VELLFNLQLYMQQSQNNLVGKDHLKLRSY----Y---NPIKNVIDGDLLERFLEFDISLK 1192
Query: 229 LEICKKIGSKHNDILDELYDIEALSS 254
+EI +K+ NDI +L D+ S+
Sbjct: 1193 IEISRKLNKSVNDIEKKLIDLRNRSA 1218
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 256 243 0.00097 113 3 11 22 0.41 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 601 (64 KB)
Total size of DFA: 190 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.84u 0.07s 18.91t Elapsed: 00:00:35
Total cpu time: 18.84u 0.07s 18.91t Elapsed: 00:00:36
Start: Thu Aug 15 14:24:42 2013 End: Thu Aug 15 14:25:18 2013