RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13880
         (256 letters)



>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
           {Serratia marcescens [TaxId: 615]}
          Length = 192

 Score = 27.5 bits (60), Expect = 1.3
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 87  ISDKDKNVVLFMYQPEARESNGGHRLIKK 115
           + D  + V  F + PE+  +  G RL+++
Sbjct: 156 VRDDRRRVCGFQFHPESILTTHGARLLEQ 184


>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 188

 Score = 27.2 bits (59), Expect = 1.8
 Identities = 3/31 (9%), Positives = 12/31 (38%)

Query: 85  FMISDKDKNVVLFMYQPEARESNGGHRLIKK 115
             +  ++  +    + PE   +  G  +++ 
Sbjct: 151 EAMKHEELPIYGVQFHPEVAHTEKGEEILRN 181


>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 196

 Score = 26.8 bits (58), Expect = 2.2
 Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)

Query: 67  LPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARESNGGHRLIK 114
           LP               GF    K + +    + PE   +  G  + +
Sbjct: 136 LPDDFTLAASSATCQVQGFYH--KTRPIYATQFHPEVEHTQYGRDIFR 181


>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 195

 Score = 26.4 bits (57), Expect = 2.9
 Identities = 7/69 (10%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 46  FKKLKVLFVSDRSKRANEQPGLPRGVYACEFVIESSSMGFMISDKDKNVVLFMYQPEARE 105
           +  +   F + R             +       ++  M   I  ++  +    + PE+  
Sbjct: 123 YYGIAKEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMA--IHHEEYPIYGVQFHPESVG 180

Query: 106 SNGGHRLIK 114
           ++ G++++ 
Sbjct: 181 TSLGYKILY 189


>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 205

 Score = 26.0 bits (56), Expect = 3.8
 Identities = 5/31 (16%), Positives = 17/31 (54%)

Query: 85  FMISDKDKNVVLFMYQPEARESNGGHRLIKK 115
            ++++++K      + PE   +  G R++++
Sbjct: 164 AIMANEEKRFYGVQFHPEVTHTRQGMRMLER 194


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 949,298
Number of extensions: 43255
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 6
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)