BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13881
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OSC|A Chain A, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|B Chain B, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|C Chain C, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|D Chain D, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|E Chain E, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
pdb|1OSC|F Chain F, Crystal Structure Of Rat Cuta1 At 2.15 A Resolution
Length = 126
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 80/102 (78%)
Query: 33 YEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMI 92
Y PG+ S ++VT P+++VA ++A ++ + LAACVN+IP + S+Y+W+GK+ D+E +M+
Sbjct: 18 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMM 77
Query: 93 IKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
IK+++S + +T+++R HPYEV EVI++P+ QGNPPYL W+
Sbjct: 78 IKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWV 119
>pdb|2ZFH|A Chain A, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|B Chain B, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|C Chain C, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|D Chain D, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|E Chain E, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
pdb|2ZFH|F Chain F, Crystal Structure Of Putative Cuta1 From Homo Sapiens At
2.05a Resolution
Length = 179
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 82/111 (73%)
Query: 24 STCTKAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKV 83
S + + Y PG+ S ++VT P+++VA ++A ++ + LAACVN+IP + S+Y+W+GK+
Sbjct: 54 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI 113
Query: 84 NTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
D+E +M+IK+++S + +T ++R HPYEV EVI++P+ QGN PYLQW+
Sbjct: 114 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWV 164
>pdb|1XK8|A Chain A, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|B Chain B, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|C Chain C, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|D Chain D, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|E Chain E, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
pdb|1XK8|F Chain F, Divalent Cation Tolerant Protein Cuta From Homo Sapiens
O60888
Length = 147
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 82/111 (73%)
Query: 24 STCTKAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKV 83
S + + Y PG+ S ++VT P+++VA ++A ++ + LAACVN+IP + S+Y+W+GK+
Sbjct: 22 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI 81
Query: 84 NTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
D+E +M+IK+++S + +T ++R HPYEV EVI++P+ QGN PYLQW+
Sbjct: 82 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWV 132
>pdb|2ZOM|A Chain A, Crystal Structure Of Cuta1 From Oryza Sativa
pdb|2ZOM|B Chain B, Crystal Structure Of Cuta1 From Oryza Sativa
pdb|2ZOM|C Chain C, Crystal Structure Of Cuta1 From Oryza Sativa
Length = 113
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 73/98 (74%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
V YVT P+ E +LA ++S+ LAACVNI+PG++SVY WEGKV TD E ++IIK+R S
Sbjct: 12 VVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESL 71
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDN 137
L+ +T+ ++ NH Y+V EVI++PI GN YL+W+ ++
Sbjct: 72 LDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNS 109
>pdb|1NZA|A Chain A, Divalent Cation Tolerance Protein (Cut A1) From Thermus
Thermophilus Hb8
pdb|1V6H|A Chain A, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
pdb|1V6H|B Chain B, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
pdb|1V6H|C Chain C, The Trimeric Structure Of Divalent Cation Tolerance
Protein Cuta1 From Thermus Thermophilus Hb8
Length = 103
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 68/100 (68%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
V +T PS+EVA +A+ L+ + LAACVNI+PG+ S+Y+W+G+V D E ++++K+ T
Sbjct: 2 EEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTT 61
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDN 137
+ + ++ HPY V E++++PI +GN YL W+ +N
Sbjct: 62 HAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLREN 101
>pdb|1P1L|A Chain A, Structure Of The Periplasmic Divalent Cation Tolerance
Protein Cuta From Archaeoglobus Fulgidus
Length = 102
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
H+ Y+T PS E A ++A+ LL + LAACVNI P +KS + WEGK+ TE MI+K+R+
Sbjct: 2 HNFIYITAPSLEEAERIAKRLLEKKLAACVNIFP-IKSFFWWEGKIEAATEFAMIVKTRS 60
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ ++ ++ H Y + ++PI +G +L WI + V
Sbjct: 61 EKFAEVRDEVKAMHSYTTPCICAIPIERGLKEFLDWIDETV 101
>pdb|1NAQ|A Chain A, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|B Chain B, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|C Chain C, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|D Chain D, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|E Chain E, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
pdb|1NAQ|F Chain F, Crystal Structure Of Cuta1 From E.Coli At 1.7 A Resolution
Length = 112
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 61/99 (61%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
V T P + A LA +L++ LAAC +IPG S+Y WEGK+ + E MI+K+ S
Sbjct: 13 VVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSH 72
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 73 QQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 111
>pdb|3AH6|A Chain A, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|B Chain B, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|C Chain C, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|D Chain D, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|E Chain E, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
pdb|3AH6|F Chain F, Remarkable Improvement Of The Heat Stability Of Cuta1 From
E.Coli By Rational Protein Designing
Length = 112
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 61/99 (61%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
V T P + A LA +L++ LAAC +IPG S+Y WEGK+ + E MI+K+ S
Sbjct: 13 VVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSH 72
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 73 QQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 111
>pdb|3GSD|A Chain A, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|B Chain B, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|C Chain C, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|D Chain D, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|E Chain E, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|F Chain F, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|G Chain G, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|H Chain H, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|I Chain I, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|J Chain J, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|K Chain K, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
pdb|3GSD|L Chain L, 2.05 Angstrom Structure Of A Divalent-cation Tolerance
Protein (cuta) From Yersinia Pestis
Length = 122
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%)
Query: 44 TTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDM 103
T P + A LA +L + LAACV ++PG S+Y WEGK+ + E ++ KS T + +
Sbjct: 27 TAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQAL 86
Query: 104 TKWIRENHPYEVCEVISMPITQGNPPYLQWIS 135
+I+++HPY+ E++ +P+ G+ YL W++
Sbjct: 87 LTYIKQHHPYQTPELLVLPVRDGDKDYLSWLN 118
>pdb|3OPK|A Chain A, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3OPK|B Chain B, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
pdb|3OPK|C Chain C, Crystal Structure Of Divalent-Cation Tolerance Protein
Cuta From Salmonella Enterica Subsp. Enterica Serovar
Typhimurium Str. Lt2
Length = 118
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 60/99 (60%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
V T P + A LA +L++ LAAC ++PG S+Y WEGK+ + E MI+K+ S
Sbjct: 19 VVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSH 78
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 79 QQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 117
>pdb|4E98|A Chain A, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|B Chain B, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
pdb|4E98|C Chain C, Crystal Structure Of Possible Cuta1 Divalent Ion Tolerance
Protein From Cryptosporidium Parvum Iowa Ii
Length = 138
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 64/97 (65%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
Y++ P+ + AT +A+ L+ + L ACV+IIP V+S+YK++G+V+ + E M+++K+ +
Sbjct: 40 YISAPNQDEATSIAKTLVDEELCACVSIIPSVRSIYKFKGQVHDENEVMLLVKTTSQLFT 99
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + + E H YE+ E+I+ + GN Y+ W++ V
Sbjct: 100 TLKEKVTEIHSYELPEIIATKVVYGNENYINWVNQTV 136
>pdb|3AA9|A Chain A, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From
E. Coli
pdb|3AA9|B Chain B, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From
E. Coli
pdb|3AA9|C Chain C, Crystal Structure Analysis Of The Mutant Cuta1 (E61v) From
E. Coli
Length = 112
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 60/99 (60%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
V T P + A LA +L++ LAAC +IPG S+Y WEGK+ + MI+K+ S
Sbjct: 13 VVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYVVQMILKTTVSH 72
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 73 QQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 111
>pdb|3AA8|A Chain A, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V)
FROM E. Coli
pdb|3AA8|B Chain B, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V)
FROM E. Coli
pdb|3AA8|C Chain C, Crystal Structure Analysis Of The Mutant Cuta1 (S11vE61V)
FROM E. Coli
Length = 112
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 60/99 (60%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
V T P + A LA +L++ LAAC +IPG S+Y WEGK+ + MI+K+ S
Sbjct: 13 VVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYVVQMILKTTVSH 72
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 73 QQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 111
>pdb|3AHP|A Chain A, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|B Chain B, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|C Chain C, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|D Chain D, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|E Chain E, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
pdb|3AHP|F Chain F, Crystal Structure Of Stable Protein, Cuta1, From A
Psychrotrophic Bacterium Shewanella Sp. Sib1
Length = 108
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
+ T P ++A ++A L+ LAACV I V+S+Y+W+ + E M IK T+
Sbjct: 10 FTTCPDADIACRIATALVEAKLAACVQIGQAVESIYQWDNNICQSHEVPMQIKCMTTDYP 69
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVP 139
+ + + HPYEV E I+ PI G PYLQWI DN P
Sbjct: 70 AIEQLVITMHPYEVPEFIATPIIGGFGPYLQWIKDNSP 107
>pdb|4IYQ|A Chain A, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1
From Ehrlichia Chaffeensis
pdb|4IYQ|B Chain B, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1
From Ehrlichia Chaffeensis
pdb|4IYQ|C Chain C, Crystal Structure Of Divalent Ion Tolerance Protein Cuta1
From Ehrlichia Chaffeensis
Length = 127
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 27 TKAAMSYEPGTH---SVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKV 83
T A + PG+ S+ Y TTP+ E A +++ LL L AC NI + SVY WE ++
Sbjct: 11 TLEAQTQGPGSMKNISLLYTTTPTYEDAYRISNILLENKLIACANIFSNITSVYVWEDEI 70
Query: 84 NTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISD 136
+ +TE +I+K+ ++ T I+ HPY+ +I++ T N ++QW++D
Sbjct: 71 HNNTECAIILKTTNDLVQHATNKIQAIHPYDTPAIITIDPTNANDKFIQWVND 123
>pdb|2E66|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|B Chain B, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|C Chain C, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
Length = 102
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
+ Y T P E A K+ + LL + L AC N+ ++ Y WEGK+ D E I+K+R +
Sbjct: 3 IVYTTFPDWESAEKVVKTLLKERLIACANLREH-RAFYWWEGKIEEDKEVGAILKTREAL 61
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
E++ + I+E HPY+V +I + + N YL+W+
Sbjct: 62 WEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWL 96
>pdb|1UKU|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Cu2+
pdb|1UMJ|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta In The
Presence Of 3m Guanidine Hydrochloride
pdb|1UMJ|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Cuta In The
Presence Of 3m Guanidine Hydrochloride
Length = 102
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
+ Y T P E A K+ + LL + L AC N+ ++ Y WEGK+ D E I+K+R
Sbjct: 3 IVYTTFPDWESAEKVVKTLLKERLIACANLREH-RAFYWWEGKIEEDKEVGAILKTREDL 61
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
E++ + I+E HPY+V +I + + N YL+W+
Sbjct: 62 WEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWL 96
>pdb|1J2V|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii
Length = 102
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
+ Y T P E A K+ + LL + AC N+ ++ Y WEGK+ D E I+K+R
Sbjct: 3 IVYTTFPDWESAEKVVKTLLKERXIACANLREH-RAFYWWEGKIEEDKEVGAILKTREDL 61
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
E++ + I+E HPY+V +I + + N YL+W+
Sbjct: 62 WEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWL 96
>pdb|2NUH|A Chain A, Crystal Structure Of Cuta From The Phytopathgen Bacterium
Xylella Fastidiosa
Length = 118
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 46 PSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTK 105
PS E+ +++ L+ + LAACV +PG S Y+W+GK+ T E ++IK+ +
Sbjct: 16 PSAEIISRV---LVQERLAACVTQLPGAVSTYRWQGKIETTQEIQLLIKTNAVHVNAAIT 72
Query: 106 WIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ HPY + E I++ ++ G P YL WI+ +
Sbjct: 73 RLCALHPYRLPEAIAVQVSVGLPEYLTWINTEI 105
>pdb|1V99|A Chain A, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|B Chain B, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|C Chain C, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|D Chain D, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|E Chain E, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V99|F Chain F, Crystal Structure Of The Periplasmic Divalent Cation
Tolerance Protein Cuta From Pyrococcus Horikoshii Ot3 In
The Presence Of Cucl2
pdb|1V9B|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|C Chain C, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|D Chain D, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|E Chain E, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
pdb|1V9B|F Chain F, Crystal Structure Of Pyrococcus Horikoshii Cuta1 Complexed
With Co2+
Length = 102
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99
+ Y T P E A K+ + LL + L A N+ ++ Y WEGK+ D E I+K+R
Sbjct: 3 IVYTTFPDWESAEKVVKTLLKERLIAXANLREH-RAFYWWEGKIEEDKEVGAILKTREDL 61
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWI 134
E++ + I+E HPY+V +I + + N YL+W+
Sbjct: 62 WEELKERIKELHPYDVPAIIRIDVDDVNEDYLKWL 96
>pdb|1KR4|A Chain A, Structure Genomics, Protein Tm1056, Cuta
Length = 125
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 33 YEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMI 92
Y G + Y T P++E A ++ LL + L AC N ++S Y W+G++ D E I
Sbjct: 18 YFXGHXILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAI 76
Query: 93 IKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
K+ + +++ + +R+ HPYE + ++ + Y W+ ++V
Sbjct: 77 FKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEYXNWLRESV 122
>pdb|1VHF|A Chain A, Crystal Structure Of Periplasmic Divalent Cation Tolerance
Protein
Length = 113
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
Y T P++E A ++ LL + L AC N ++S Y W+G++ D E I K+ + +
Sbjct: 7 YSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAIFKTTEEKEK 65
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
++ + +R+ HPYE + ++ + Y W+ ++V
Sbjct: 66 ELYEELRKLHPYETPAIFTLKVENVLTEYXNWLRESV 102
>pdb|1O5J|A Chain A, Crystal Structure Of Periplasmic Divalent Cation Tolerance
Protein (Tm1056) From Thermotoga Maritima At 1.95 A
Resolution
Length = 113
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
Y T P++E A ++ LL + L AC N ++S Y W+G++ D E I K+ + +
Sbjct: 17 YSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAIFKTTEEKEK 75
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
++ + +R+ HPYE + ++ + Y W+ ++V
Sbjct: 76 ELYEELRKLHPYETPAIFTLKVENVLTEYXNWLRESV 112
>pdb|1NEZ|G Chain G, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
pdb|1NEZ|H Chain H, The Crystal Structure Of A TlCD8AA COMPLEX AT 2.1A
Resolution:implications For Memory T Cell Generation,
Co-Receptor Preference And Affinity
Length = 128
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 79 WEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNP--PYLQWISD 136
W+ K+N+ + + + + K+ +EN Y C VIS + + P LQ +S
Sbjct: 65 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVSS 124
Query: 137 NVPP 140
+ P
Sbjct: 125 ALVP 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,734,008
Number of Sequences: 62578
Number of extensions: 127924
Number of successful extensions: 316
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 25
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)