Query psy13881
Match_columns 140
No_of_seqs 116 out of 843
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 22:47:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1324 CutA Uncharacterized p 100.0 3.1E-46 6.8E-51 272.9 11.8 103 37-139 2-104 (104)
2 PRK10645 divalent-cation toler 100.0 1E-45 2.2E-50 273.1 14.0 103 37-139 10-112 (112)
3 PF03091 CutA1: CutA1 divalent 100.0 6.7E-46 1.5E-50 269.7 11.2 102 38-139 1-102 (102)
4 KOG3338|consensus 100.0 2.9E-41 6.2E-46 256.8 4.1 125 15-139 19-146 (153)
5 COG3323 Uncharacterized protei 98.1 5.6E-06 1.2E-10 61.4 4.7 77 48-125 14-106 (109)
6 smart00049 DEP Domain found in 86.1 1.8 4E-05 28.6 4.5 24 45-68 36-59 (77)
7 cd04450 DEP_RGS7-like DEP (Dis 77.6 2.8 6E-05 29.2 3.0 27 44-70 43-69 (88)
8 PF00610 DEP: Domain found in 69.3 5.1 0.00011 26.2 2.6 25 45-69 35-59 (74)
9 COG4259 Uncharacterized protei 69.0 1.1 2.3E-05 33.8 -0.9 51 58-111 14-64 (121)
10 PF12461 DUF3688: Protein of u 67.6 3.2 7E-05 29.6 1.4 13 72-84 59-71 (91)
11 cd04371 DEP DEP domain, named 59.6 12 0.00026 24.6 2.9 25 44-68 43-67 (81)
12 PF11232 Med25: Mediator compl 58.6 6.7 0.00015 30.8 1.8 41 28-70 66-106 (152)
13 cd04439 DEP_1_P-Rex DEP (Dishe 53.9 15 0.00033 25.4 2.8 26 44-69 43-68 (81)
14 cd04437 DEP_Epac DEP (Dishevel 53.8 39 0.00086 25.4 5.2 67 45-113 47-116 (125)
15 cd04438 DEP_dishevelled DEP (D 52.0 17 0.00038 25.3 2.9 24 45-68 46-69 (84)
16 cd04449 DEP_DEPDC5-like DEP (D 52.0 17 0.00038 24.9 2.8 24 45-68 46-69 (83)
17 cd04436 DEP_fRgd2 DEP (Disheve 50.7 16 0.00035 26.0 2.5 20 45-64 45-64 (84)
18 cd04441 DEP_2_DEP6 DEP (Dishev 50.4 19 0.00041 25.4 2.8 24 45-68 48-71 (85)
19 cd04442 DEP_1_DEP6 DEP (Dishev 48.1 23 0.00049 24.8 2.9 24 45-68 44-67 (82)
20 PF14120 YhzD: YhzD-like prote 47.3 20 0.00044 24.2 2.4 20 43-62 21-40 (61)
21 cd04443 DEP_GPR155 DEP (Dishev 47.0 23 0.0005 24.7 2.8 24 45-68 46-69 (83)
22 cd04448 DEP_PIKfyve DEP (Dishe 46.1 23 0.00049 24.5 2.7 23 45-67 44-66 (81)
23 PRK14751 tetracycline resistan 46.0 13 0.00029 21.2 1.2 14 67-80 8-21 (28)
24 PF13151 DUF3990: Protein of u 43.9 71 0.0015 24.6 5.4 71 41-125 28-107 (154)
25 cd04440 DEP_2_P-Rex DEP (Dishe 42.6 30 0.00064 24.9 2.9 26 43-68 51-76 (93)
26 KOG1250|consensus 41.9 29 0.00063 31.6 3.3 75 40-118 162-246 (457)
27 cd04444 DEP_PLEK2 DEP (Disheve 39.4 22 0.00049 26.4 1.9 26 44-69 46-71 (109)
28 PF02629 CoA_binding: CoA bind 36.2 95 0.0021 21.3 4.6 31 40-71 65-95 (96)
29 PF03802 CitX: Apo-citrate lya 35.8 19 0.00041 28.2 1.1 32 82-113 76-107 (170)
30 KOG0333|consensus 35.8 2.6E+02 0.0056 26.8 8.5 82 40-137 455-536 (673)
31 COG1522 Lrp Transcriptional re 35.6 1.7E+02 0.0037 21.1 7.5 54 39-107 70-124 (154)
32 TIGR01719 euk_UDPppase uridine 32.0 71 0.0015 26.8 4.0 35 40-74 32-66 (287)
33 COG2344 AT-rich DNA-binding pr 31.9 51 0.0011 27.2 3.0 42 29-71 138-179 (211)
34 PF03736 EPTP: EPTP domain; I 31.8 58 0.0013 19.5 2.6 9 73-81 36-44 (44)
35 PF02863 Arg_repressor_C: Argi 31.0 91 0.002 20.6 3.7 32 87-121 12-43 (70)
36 PF14004 DUF4227: Protein of u 30.6 26 0.00057 24.1 1.0 25 103-127 27-51 (71)
37 TIGR03735 PRTRC_A PRTRC system 30.3 65 0.0014 26.1 3.4 41 80-122 61-102 (192)
38 cd01917 ACS_2 Acetyl-CoA synth 29.3 1.1E+02 0.0024 26.4 4.7 30 38-67 130-159 (287)
39 PF09961 DUF2195: Uncharacteri 28.3 21 0.00046 27.1 0.2 36 54-99 17-52 (121)
40 KOG3793|consensus 28.1 52 0.0011 28.7 2.6 98 4-105 76-176 (362)
41 PF08076 TetM_leader: Tetracyc 26.6 34 0.00073 19.7 0.8 13 68-80 9-21 (28)
42 COG1885 Uncharacterized protei 25.0 96 0.0021 23.3 3.2 23 42-64 79-101 (115)
43 PF11443 DUF2828: Domain of un 25.0 81 0.0018 29.3 3.4 33 95-128 458-490 (534)
44 PF04475 DUF555: Protein of un 24.7 1E+02 0.0023 22.7 3.3 22 42-63 77-98 (102)
45 PRK11178 uridine phosphorylase 24.7 1.5E+02 0.0032 24.2 4.6 75 41-124 19-93 (251)
46 PRK03922 hypothetical protein; 23.4 73 0.0016 23.9 2.3 21 43-63 80-100 (113)
47 cd07998 WGR_DNA_ligase WGR dom 22.8 63 0.0014 22.6 1.7 20 44-63 49-68 (77)
48 cd04087 PTPA Phosphotyrosyl ph 20.7 1.3E+02 0.0029 25.5 3.7 37 94-136 29-65 (266)
49 PRK05412 putative nucleotide-b 20.7 2.6E+02 0.0056 22.2 5.0 56 44-116 98-153 (161)
50 PF13793 Pribosyltran_N: N-ter 20.2 3.5E+02 0.0076 19.6 8.1 81 40-121 2-85 (116)
51 cd04446 DEP_DEPDC4 DEP (Dishev 20.0 1.1E+02 0.0025 22.0 2.7 23 46-68 52-74 (95)
No 1
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=272.88 Aligned_cols=103 Identities=44% Similarity=0.874 Sum_probs=101.0
Q ss_pred ceEEEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCCccc
Q psy13881 37 THSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVC 116 (140)
Q Consensus 37 ~~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPYevP 116 (140)
++++|+||+||.++|++|||.||++|||||||++|+|+|+|||+|+|++++|+.|++||+++++++|.++|+++||||+|
T Consensus 2 ~~~~Vl~T~pd~e~Ae~iar~lleerLaACvni~p~i~S~Y~W~G~Iee~~E~~liiKT~~~~~~~l~~~ikelHpYevP 81 (104)
T COG1324 2 MMVLVLTTAPDEESAERIARKLLEERLAACVNIIPGIKSIYWWEGKIEEDEEVALIIKTTSEKFEELIERIKELHPYEVP 81 (104)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHhhhheecccCccEEEEECCeeeecceeEEEEEehHHhHHHHHHHHHHhCCCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCChhHHHHHhhhCC
Q psy13881 117 EVISMPITQGNPPYLQWISDNVP 139 (140)
Q Consensus 117 eIi~~~i~~~~~~Yl~Wi~~~~~ 139 (140)
||+++|++.|+++|++|++++++
T Consensus 82 eIi~i~v~~g~~eYL~Wl~~~~~ 104 (104)
T COG1324 82 EIIALPVDNGLPEYLEWLNEETK 104 (104)
T ss_pred eEEEEEeccCCHHHHHHHHHhcC
Confidence 99999999999999999999864
No 2
>PRK10645 divalent-cation tolerance protein CutA; Provisional
Probab=100.00 E-value=1e-45 Score=273.11 Aligned_cols=103 Identities=33% Similarity=0.736 Sum_probs=100.6
Q ss_pred ceEEEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCCccc
Q psy13881 37 THSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVC 116 (140)
Q Consensus 37 ~~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPYevP 116 (140)
.+++|+||+||.++|++||+.||++|||||||++|+|+|+|+|+|++++++|+.|+|||+.+++++|+++|+++||||+|
T Consensus 10 ~~~lV~tT~p~~e~A~~ia~~Lve~rLaACvni~p~i~S~Y~W~G~i~~~~E~~l~iKT~~~~~~~l~~~I~~~HpYevP 89 (112)
T PRK10645 10 DAVVVLCTAPDEATAQDLAAKVLAEKLAACVTLLPGATSLYYWEGKLEQEYEVQMLLKTTVSHQQALLECLKSHHPYQTP 89 (112)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHCCeeEEEecCCCeeEEEEECCEEeeeeEEEEEEEeCHHHHHHHHHHHHHhCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCChhHHHHHhhhCC
Q psy13881 117 EVISMPITQGNPPYLQWISDNVP 139 (140)
Q Consensus 117 eIi~~~i~~~~~~Yl~Wi~~~~~ 139 (140)
||+++|+++|+++|++||.++++
T Consensus 90 eIi~~~i~~g~~~Yl~Wi~~~~~ 112 (112)
T PRK10645 90 ELLVLPVTHGDTDYLSWLNASLR 112 (112)
T ss_pred EEEEEEcccCCHHHHHHHHHhcC
Confidence 99999999999999999998864
No 3
>PF03091 CutA1: CutA1 divalent ion tolerance protein; InterPro: IPR004323 The CutA family of proteins which exhibit ion tolerance are found in a large variety of species []. In E.Coli, two operons on the cutA locus contain genes that encode three proteins, CutA1, CutA2 and CutA3. CutA1 proteins are found in the cytoplasm while CutA2 (50kDa) and CutA3 (24kDa) are located in the inner membrane. Although the role of E. Coli CutA1 is not clear, studies on E. coli cutA locus describe some mutations that lead to an increase in copper sensitivity, thus suggesting a role in ion tolerance []. To date, the structure of CutA proteins from several species have been solved [, ]. The crystal structures of the E.Coli and rat CutA1 proteins show both these proteins to be trimeric in the crystal as well as in solution[].Trimerisation seems to supported by the formation of beta sheets between the subunit. This trimeric structure suggests the protein may be involved in signal transduction due to architectural similarities with PII signal transducer proteins []. Recent studies propose that mammalian CutA1 in the neuronal cell membrane acts as an anchor for acetylcholinesterase (AChE)1 [].; GO: 0010038 response to metal ion; PDB: 1O5J_A 1KR4_A 1VHF_A 3GSD_H 1OSC_A 3OPK_A 4E98_C 1V9B_F 1UKU_A 2E66_C ....
Probab=100.00 E-value=6.7e-46 Score=269.68 Aligned_cols=102 Identities=45% Similarity=0.923 Sum_probs=96.6
Q ss_pred eEEEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCCccce
Q psy13881 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCE 117 (140)
Q Consensus 38 ~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPYevPe 117 (140)
|++|+||+||+++|++|||.||++|||||+|++|+|+|+|+|+|++++++|++|++||+.+++++|+++|+++||||+||
T Consensus 1 ~~lv~tT~p~~e~A~~ia~~lve~rLaACvni~~~i~S~Y~W~g~i~~~~E~~l~~KT~~~~~~~l~~~i~~~HpYe~Pe 80 (102)
T PF03091_consen 1 MILVYTTCPDREEAERIARALVEERLAACVNIIPPITSIYRWEGKIEEEEEVLLLIKTTASRFDELEERIRELHPYEVPE 80 (102)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHTTS-SEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHSSSSS--
T ss_pred CEEEEEEcCCHHHHHHHHHHHHhCCeEEEEEecCCceeEEEECCccccceEeeEEEEecHHHHHHHHHHHHHhCCCCCCE
Confidence 68999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCChhHHHHHhhhCC
Q psy13881 118 VISMPITQGNPPYLQWISDNVP 139 (140)
Q Consensus 118 Ii~~~i~~~~~~Yl~Wi~~~~~ 139 (140)
|+++|+++||++|++|++++++
T Consensus 81 Ii~~~i~~~~~~Yl~Wi~~~~~ 102 (102)
T PF03091_consen 81 IIALPIDKGNPAYLEWINEETK 102 (102)
T ss_dssp EEEEEESEEEHHHHHHHHHHT-
T ss_pred EEEEEccccCHHHHHHHHHhcC
Confidence 9999999999999999999875
No 4
>KOG3338|consensus
Probab=100.00 E-value=2.9e-41 Score=256.80 Aligned_cols=125 Identities=46% Similarity=0.833 Sum_probs=116.8
Q ss_pred HHhhhcccccccccc---ccccCCCceEEEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeee
Q psy13881 15 ISQISKFSASTCTKA---AMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMM 91 (140)
Q Consensus 15 ~~~~~~~~~~~~~~~---~~~~~~~~~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~L 91 (140)
+++.|++|+.++++. +..|.++...++|+|+||+|.|+++||.+|++|||||+|++|+|+|+|.|+|+|.+|.|+.|
T Consensus 19 ~t~aS~Sspt~s~~as~sgs~~r~~s~Sva~VT~P~rE~a~~~arsiV~~rLAACvNiIpeItSIY~WkgkI~edsE~ll 98 (153)
T KOG3338|consen 19 LTMASGSSPTQSSPASDSGSMYRPGSVSVAYVTAPNREVAKELARSIVEERLAACVNIIPEITSIYEWKGKIVEDSEYLL 98 (153)
T ss_pred HHHhcCCCCCCCCccccCccccccCcceeEEEecCcHHHHHHHHHHHHHHHHHHHHhhcccceehhhhhcccccchhHHH
Confidence 367778888777644 55678888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHhCCCccceEEEEeCCCCChhHHHHHhhhCC
Q psy13881 92 IIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVP 139 (140)
Q Consensus 92 liKT~~~~~~~L~~~I~e~HPYevPeIi~~~i~~~~~~Yl~Wi~~~~~ 139 (140)
++||+.++++.|.++++++||||||||+++|+..||.+||+|+++.++
T Consensus 99 ~iKtrsSl~~~Lt~fV~~nHpYeVpEVialpi~~gs~~YLeW~~q~v~ 146 (153)
T KOG3338|consen 99 IIKTRSSLHWPLTKFVRGNHPYEVPEVIALPIHLGSRPYLEWMNQCVD 146 (153)
T ss_pred HHHHhhhhhhhHHHHHhcCCCccchhheeeccccCCcHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998764
No 5
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=5.6e-06 Score=61.39 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhhCceeeEEeeeCCceEE----EeeC------------CeecccceeeeEEEeccccHHHHHHHHHHhC
Q psy13881 48 DEVATKLAEGLLSQNLAACVNIIPGVKSV----YKWE------------GKVNTDTEHMMIIKSRTSRLEDMTKWIRENH 111 (140)
Q Consensus 48 ~e~A~~iAr~Lve~rLaACvni~p~V~S~----Y~We------------Gkie~~~E~~LliKT~~~~~~~L~~~I~e~H 111 (140)
++..+.+-.+|-+.++..=+|-.. +... =.|. |+++...|+++-+....+..+++.+.|++.|
T Consensus 14 ~~~~e~vr~aL~~aGag~iG~Y~~-C~~~~~g~G~frP~egAnP~iGevgk~e~v~E~kiE~v~~~~~~~~v~~~ik~aH 92 (109)
T COG3323 14 EEYVEQVRDALFEAGAGHIGNYDH-CTFSSEGTGQFRPLEGANPFIGEVGKLEFVAEVKIEFVVPAELRAAVLSAIKKAH 92 (109)
T ss_pred HHHHHHHHHHHHhcCCcceeccce-EEEEeeeeEEEeecCCCCCcccccceEEeeeeeEEEEEcCHHHHHHHHHHHHHhC
Confidence 577889999999998876554311 1110 1233 7999999999999999999999999999999
Q ss_pred CCccceEEEEeCCC
Q psy13881 112 PYEVCEVISMPITQ 125 (140)
Q Consensus 112 PYevPeIi~~~i~~ 125 (140)
|||.|.|-.+|+.+
T Consensus 93 PYEePa~di~~l~~ 106 (109)
T COG3323 93 PYEEPAIDVIPLLN 106 (109)
T ss_pred CCCCcceEEEEccc
Confidence 99999999999865
No 6
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=86.07 E-value=1.8 Score=28.58 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
+.++++|.+++..|++.+++-.++
T Consensus 36 ~~~r~eA~~l~~~ll~~g~i~~v~ 59 (77)
T smart00049 36 IIDREEAVHLGQLLLDEGLIHHVN 59 (77)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEeC
Confidence 578999999999999999999987
No 7
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=77.61 E-value=2.8 Score=29.17 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=24.2
Q ss_pred eCCCHHHHHHHHHHHhhCceeeEEeee
Q psy13881 44 TTPSDEVATKLAEGLLSQNLAACVNII 70 (140)
Q Consensus 44 T~p~~e~A~~iAr~Lve~rLaACvni~ 70 (140)
++.|+++|.++|..|++.+|+..|+--
T Consensus 43 ~~~~~~EA~~~~~~ll~~gli~~V~~~ 69 (88)
T cd04450 43 DVVDPSEALEIAALFVKYGLITPVSDH 69 (88)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 448999999999999999999999853
No 8
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=69.33 E-value=5.1 Score=26.18 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEee
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVNI 69 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvni 69 (140)
+.|+++|..+++.|++.+++.-++-
T Consensus 35 ~~~r~eA~~l~q~Ll~~g~i~~v~~ 59 (74)
T PF00610_consen 35 VRDREEAVQLGQELLDHGFIEHVSD 59 (74)
T ss_dssp TSSHHHHHHHHHHHHHCTSEEESSS
T ss_pred ccCHHHHHHHHHHHHHCCCEEECCC
Confidence 6899999999999999999998865
No 9
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.98 E-value=1.1 Score=33.76 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=32.5
Q ss_pred HhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhC
Q psy13881 58 LLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENH 111 (140)
Q Consensus 58 Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~H 111 (140)
+--.-|++|+. -| +|+|.|+|--.+--|..=-=-|.....+++++.+.+.-
T Consensus 14 ~av~~LagC~~-gp--KslY~w~gYq~tvyEy~K~~es~e~Q~~~le~~~ek~~ 64 (121)
T COG4259 14 LAVAALAGCGG-GP--KSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEKIG 64 (121)
T ss_pred HHHHHHHHccC-CC--ccccccCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 33445899996 34 99999999766555543211234556677777776654
No 10
>PF12461 DUF3688: Protein of unknown function (DUF3688) ; InterPro: IPR022160 This entry is represented by Spiroplasma phage 1-C74, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This domain family is found in bacteria and viruses, and is typically between 79 and 104 amino acids in length. There is a conserved YRW sequence motif. There is a single completely conserved residue Y that may be functionally important.
Probab=67.56 E-value=3.2 Score=29.64 Aligned_cols=13 Identities=46% Similarity=0.892 Sum_probs=10.6
Q ss_pred CceEEEeeCCeec
Q psy13881 72 GVKSVYKWEGKVN 84 (140)
Q Consensus 72 ~V~S~Y~WeGkie 84 (140)
-+.|+|||+|.=|
T Consensus 59 ~fKsvYRWdG~gE 71 (91)
T PF12461_consen 59 YFKSVYRWDGVGE 71 (91)
T ss_pred eEEEEEEecCCCC
Confidence 4699999999744
No 11
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=59.61 E-value=12 Score=24.60 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred eCCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 44 TTPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 44 T~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
...|.++|.++++.|++.+++..++
T Consensus 43 ~~~~r~ea~~~~~~ll~~g~i~~v~ 67 (81)
T cd04371 43 EAITREEAVELGQALLKHGLIHHVS 67 (81)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3479999999999999999998886
No 12
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=58.62 E-value=6.7 Score=30.75 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=26.4
Q ss_pred ccccccCCCceEEEEEeCCCHHHHHHHHHHHhhCceeeEEeee
Q psy13881 28 KAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNII 70 (140)
Q Consensus 28 ~~~~~~~~~~~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~ 70 (140)
++++-|.....++...| .+.|.-+.|++.+ ..+-|||++..
T Consensus 66 ~i~~~~kns~~v~f~~~-~~~E~l~~L~~im-~ng~~GcvhF~ 106 (152)
T PF11232_consen 66 NIGGLFKNSRSVVFHFT-TDCESLKSLYRIM-SNGFAGCVHFS 106 (152)
T ss_dssp GGGGGGSSEEEEEEEES-S-HHHHHHHHHHH-HCCEEEEEE--
T ss_pred HHHHHHhcCeEEEEEcC-CChHHHHHHHHHh-cCCeEEEEEcC
Confidence 66677744444444455 4677777777766 88899999984
No 13
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=53.88 E-value=15 Score=25.43 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.8
Q ss_pred eCCCHHHHHHHHHHHhhCceeeEEee
Q psy13881 44 TTPSDEVATKLAEGLLSQNLAACVNI 69 (140)
Q Consensus 44 T~p~~e~A~~iAr~Lve~rLaACvni 69 (140)
.+.++++|-.+++.|++.+++-.|.-
T Consensus 43 ~~~~r~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 43 EISKPEEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 46788999999999999999998753
No 14
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=53.80 E-value=39 Score=25.44 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEeeeC---CceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCC
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVNIIP---GVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPY 113 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvni~p---~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPY 113 (140)
..|+++|-++++.|++++++-.|.--. .=..+|++.+.-....=. -.+..++-+.+...++.++=|+
T Consensus 47 v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~~~~--~~~~~eee~~~~v~~l~q~~p~ 116 (125)
T cd04437 47 VQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSPAPL--EKREAEEELQEAVTLLSQLGPD 116 (125)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCcccc--hhhhhHHHHHHHHHHHHhhCcH
Confidence 368999999999999999999986432 123679888763333221 4455566666667777777665
No 15
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=52.03 E-value=17 Score=25.35 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
..|+++|..+++.|++.+++-.|.
T Consensus 46 ~~~R~eAv~~g~~Ll~~G~i~HV~ 69 (84)
T cd04438 46 LTDRREARKYASSLLKLGYIRHTV 69 (84)
T ss_pred CCCHHHHHHHHHHHHHCCcEEecC
Confidence 468999999999999999998764
No 16
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=51.96 E-value=17 Score=24.94 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
+.|+++|-++++.|++++++..|.
T Consensus 46 ~~~r~eAv~lgq~Ll~~g~I~hv~ 69 (83)
T cd04449 46 VDTREEAVELGQELMNEGLIEHVS 69 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 578999999999999999988774
No 17
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=50.68 E-value=16 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHhhCcee
Q psy13881 45 TPSDEVATKLAEGLLSQNLA 64 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLa 64 (140)
.||.+.|+++++.|++.++.
T Consensus 45 ~~s~~~aE~fGQdLv~~gfi 64 (84)
T cd04436 45 EKDLDAAEAFGQDLLNQGFL 64 (84)
T ss_pred CCCHHHHHHHHHHHHhCchH
Confidence 39999999999999999988
No 18
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=50.40 E-value=19 Score=25.43 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
+.|+++|-.+++.|++++++-.|.
T Consensus 48 ~~sR~eAv~lgq~Ll~~gii~HV~ 71 (85)
T cd04441 48 AESRREAVQLCRRLLEHGIIQHVS 71 (85)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 689999999999999999998875
No 19
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=48.09 E-value=23 Score=24.79 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
+.|+++|.++++.|++++++-.|.
T Consensus 44 ~~sR~eAv~lgq~Ll~~gvi~HV~ 67 (82)
T cd04442 44 ASDRETAIKIMQKLLDHSIIHHVC 67 (82)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecc
Confidence 578999999999999999998883
No 20
>PF14120 YhzD: YhzD-like protein
Probab=47.27 E-value=20 Score=24.18 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.2
Q ss_pred EeCCCHHHHHHHHHHHhhCc
Q psy13881 43 VTTPSDEVATKLAEGLLSQN 62 (140)
Q Consensus 43 tT~p~~e~A~~iAr~Lve~r 62 (140)
.++.|.++|+++++.+|+++
T Consensus 21 feA~~D~eAK~~G~~~L~Ek 40 (61)
T PF14120_consen 21 FEAANDEEAKEIGEQKLKEK 40 (61)
T ss_pred eecCCHHHHHHHHHHHHHHC
Confidence 56788899999999999865
No 21
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=47.05 E-value=23 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
+.|+++|.++++.|+++++.-.|.
T Consensus 46 ~~sR~eAv~lg~~Ll~~G~i~HV~ 69 (83)
T cd04443 46 AQDRGEAVLYGRRLLQGGVLQHIT 69 (83)
T ss_pred CCCHHHHHHHHHHHHHCCCEEecC
Confidence 578999999999999999988764
No 22
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=46.08 E-value=23 Score=24.47 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHhhCceeeEE
Q psy13881 45 TPSDEVATKLAEGLLSQNLAACV 67 (140)
Q Consensus 45 ~p~~e~A~~iAr~Lve~rLaACv 67 (140)
+.|+++|..+++.|++++++--|
T Consensus 44 ~~~R~eAv~~gq~Ll~~g~i~hV 66 (81)
T cd04448 44 AATRVQAIAIGQALLDAGWIECV 66 (81)
T ss_pred CCCHHHHHHHHHHHHHCCCEEec
Confidence 58999999999999999988665
No 23
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=45.96 E-value=13 Score=21.20 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.3
Q ss_pred EeeeCCceEEEeeC
Q psy13881 67 VNIIPGVKSVYKWE 80 (140)
Q Consensus 67 vni~p~V~S~Y~We 80 (140)
++.+|.=+|+|.|+
T Consensus 8 ~h~~psdksi~hwd 21 (28)
T PRK14751 8 MHKNPSDKSIYHWD 21 (28)
T ss_pred eecCCCcCceeeee
Confidence 45677779999997
No 24
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=43.88 E-value=71 Score=24.58 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=48.3
Q ss_pred EEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHh---------C
Q psy13881 41 SYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIREN---------H 111 (140)
Q Consensus 41 V~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~---------H 111 (140)
.+=++++.+.|++.|..- -+...++-++|..+...-... |-+|...+.-++=.++|..+ |
T Consensus 28 GFY~T~~~~qA~~wA~~~--------~~~~~~~v~~Y~~~~~~~~~~---l~~k~F~~~~~eWl~fV~~nR~~~~~~~~~ 96 (154)
T PF13151_consen 28 GFYLTTDKEQAKRWAKRK--------RNGGDPIVNVYEFDEDGLDSD---LKIKIFEKYDEEWLDFVVNNRKGKDSYPYH 96 (154)
T ss_pred eeEcccCHHHHHHHHHhc--------ccCCCCEEEEEEEeccccccc---ccccccCcchHHHHHHHHHhcCCCCCCCCC
Confidence 344566789999999877 344556888898886533222 77777777777777777665 7
Q ss_pred CCccceEEEEeCCC
Q psy13881 112 PYEVCEVISMPITQ 125 (140)
Q Consensus 112 PYevPeIi~~~i~~ 125 (140)
.|| ||.=|+.+
T Consensus 97 ~yD---iV~GpiAD 107 (154)
T PF13151_consen 97 DYD---IVIGPIAD 107 (154)
T ss_pred CCC---EEEecccC
Confidence 776 45566544
No 25
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=42.56 E-value=30 Score=24.95 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.1
Q ss_pred EeCCCHHHHHHHHHHHhhCceeeEEe
Q psy13881 43 VTTPSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 43 tT~p~~e~A~~iAr~Lve~rLaACvn 68 (140)
.-+.|+++|-.+++.|++.++.-.|.
T Consensus 51 g~~~tR~eAv~~gq~Ll~~gii~HV~ 76 (93)
T cd04440 51 GDCRTREEAVILGVGLCNNGFMHHVL 76 (93)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEecC
Confidence 34779999999999999999998875
No 26
>KOG1250|consensus
Probab=41.86 E-value=29 Score=31.58 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=63.3
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEecc----------ccHHHHHHHHHH
Q psy13881 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT----------SRLEDMTKWIRE 109 (140)
Q Consensus 40 iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~----------~~~~~L~~~I~e 109 (140)
-|...-.|.++|+.+|+.+.+++ .=.+| |+-.--|.|.|.=.-..|+.=.+|+.. .++.-+...+++
T Consensus 162 ~Vil~G~~~deAk~~a~~lAke~--gl~yI-~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~ 238 (457)
T KOG1250|consen 162 TVILSGEDWDEAKAFAKRLAKEN--GLTYI-PPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGGGLIAGIATGVKR 238 (457)
T ss_pred EEEEecccHHHHHHHHHHHHHhc--Cceec-CCCCCchhhcCcchHHHHHHHhhcCCCCeEEEecCCchhHHHHHHHHHH
Confidence 46677889999999999999998 55665 778999999999999999998899886 467888888999
Q ss_pred hCCCccceE
Q psy13881 110 NHPYEVCEV 118 (140)
Q Consensus 110 ~HPYevPeI 118 (140)
.-| ++|-|
T Consensus 239 ~~p-~vkII 246 (457)
T KOG1250|consen 239 VGP-HVKII 246 (457)
T ss_pred hCC-CCceE
Confidence 888 66644
No 27
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=39.45 E-value=22 Score=26.40 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.5
Q ss_pred eCCCHHHHHHHHHHHhhCceeeEEee
Q psy13881 44 TTPSDEVATKLAEGLLSQNLAACVNI 69 (140)
Q Consensus 44 T~p~~e~A~~iAr~Lve~rLaACvni 69 (140)
+..++++|-.||+.|++.++.=+|..
T Consensus 46 ~~i~R~EAv~l~q~Lmd~gli~hV~~ 71 (109)
T cd04444 46 FAASRLEAVTLASMLMEENFLRPVGV 71 (109)
T ss_pred CCCCHHHHHHHHHHHHhCCchhhHHH
Confidence 35589999999999999999988764
No 28
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=36.21 E-value=95 Score=21.27 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=23.8
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCceeeEEeeeC
Q psy13881 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIP 71 (140)
Q Consensus 40 iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p 71 (140)
+...+.|+ +.|++.+..+++.++=+.+|+.|
T Consensus 65 iaii~VP~-~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 65 IAIITVPA-EAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp EEEEES-H-HHHHHHHHHHHHTT-SEEEEESS
T ss_pred EEEEEcCH-HHHHHHHHHHHHcCCCEEEEeCC
Confidence 44566674 67999999999999999999866
No 29
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=35.80 E-value=19 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=29.7
Q ss_pred eecccceeeeEEEeccccHHHHHHHHHHhCCC
Q psy13881 82 KVNTDTEHMMIIKSRTSRLEDMTKWIRENHPY 113 (140)
Q Consensus 82 kie~~~E~~LliKT~~~~~~~L~~~I~e~HPY 113 (140)
.-.++.|..++++.....++++.-.|.+.||+
T Consensus 76 ~~~tGpe~~~~v~~~a~~vK~~~i~iEe~hpl 107 (170)
T PF03802_consen 76 NDPTGPEAFLVVDGDAEEVKRIMIEIEESHPL 107 (170)
T ss_pred ecCCcceeeEEeCCCHHHHHHHHHHHHccCcc
Confidence 45789999999999999999999999999997
No 30
>KOG0333|consensus
Probab=35.77 E-value=2.6e+02 Score=26.78 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=58.5
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCCccceEE
Q psy13881 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVI 119 (140)
Q Consensus 40 iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPYevPeIi 119 (140)
.+..|+.=.-.+++|||..+..=..+-++. .|+=+.--|-.+.+=+.++++++|.+.+.++ ++-|.||
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~----------~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiII 522 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGS----------AGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIII 522 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEecc----------CCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEE
Confidence 333344334579999999998876665554 3444555566777778888899999999988 8999999
Q ss_pred EEeCCCCChhHHHHHhhh
Q psy13881 120 SMPITQGNPPYLQWISDN 137 (140)
Q Consensus 120 ~~~i~~~~~~Yl~Wi~~~ 137 (140)
.+.-.++ .+||.+.
T Consensus 523 FvN~kk~----~d~lAk~ 536 (673)
T KOG0333|consen 523 FVNTKKG----ADALAKI 536 (673)
T ss_pred EEechhh----HHHHHHH
Confidence 9886554 4565543
No 31
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=35.59 E-value=1.7e+02 Score=21.10 Aligned_cols=54 Identities=24% Similarity=0.371 Sum_probs=37.7
Q ss_pred EEEEEeCCC-HHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHH
Q psy13881 39 SVSYVTTPS-DEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWI 107 (140)
Q Consensus 39 ~iV~tT~p~-~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I 107 (140)
+++.+...+ .+..+++++.+.+- |.|.+.|...| ++-++++......+++.+++
T Consensus 70 a~v~v~~~~~~~~~~~~~~~~~~~---------~~V~~~~~~~G------~~d~~~~~~~~~~~~~~~~~ 124 (154)
T COG1522 70 AFVEVKLERSLEDLEEFAEALAKL---------PEVVECYRVTG------DYDYLLKVRVRDLEELERFL 124 (154)
T ss_pred EEEEEEecCChhHHHHHHHHHhCC---------CCEEEEEEecC------CCcEEEEEEECCHHHHHHHH
Confidence 455555554 56778888877543 77999999999 56666666666666666555
No 32
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=31.97 E-value=71 Score=26.82 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=29.4
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCce
Q psy13881 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVK 74 (140)
Q Consensus 40 iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~ 74 (140)
-+.+..+|...|+.||+.+.+.+.+++.+-...+.
T Consensus 32 ~~vi~~GDP~Ra~~iA~~l~~~~~~~~~~~~r~~~ 66 (287)
T TIGR01719 32 KFVCMGGTPSRMKAFARYVGAELGLSCGRDYPNIS 66 (287)
T ss_pred CEEEeCCCHHHHHHHHHHHhhhhcccccccceeee
Confidence 67788999999999999999999999977655444
No 33
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=31.95 E-value=51 Score=27.22 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=33.0
Q ss_pred cccccCCCceEEEEEeCCCHHHHHHHHHHHhhCceeeEEeeeC
Q psy13881 29 AAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIP 71 (140)
Q Consensus 29 ~~~~~~~~~~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p 71 (140)
+..-....+.-+...|.| .+.|++.|..|++.+.=+--|..|
T Consensus 138 le~~v~~~dv~iaiLtVP-a~~AQ~vad~Lv~aGVkGIlNFtP 179 (211)
T COG2344 138 LEKFVKKNDVEIAILTVP-AEHAQEVADRLVKAGVKGILNFTP 179 (211)
T ss_pred HHHHHHhcCccEEEEEcc-HHHHHHHHHHHHHcCCceEEeccc
Confidence 333334445678888999 478999999999999999988876
No 34
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=31.81 E-value=58 Score=19.51 Aligned_cols=9 Identities=33% Similarity=1.276 Sum_probs=7.3
Q ss_pred ceEEEeeCC
Q psy13881 73 VKSVYKWEG 81 (140)
Q Consensus 73 V~S~Y~WeG 81 (140)
-..+|+|+|
T Consensus 36 ~s~Iy~Wd~ 44 (44)
T PF03736_consen 36 DSQIYRWDG 44 (44)
T ss_pred CCEEEEeCC
Confidence 466999997
No 35
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=30.99 E-value=91 Score=20.65 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=26.8
Q ss_pred ceeeeEEEeccccHHHHHHHHHHhCCCccceEEEE
Q psy13881 87 TEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISM 121 (140)
Q Consensus 87 ~E~~LliKT~~~~~~~L~~~I~e~HPYevPeIi~~ 121 (140)
.+..+++||.+.....+.+.|.+. +.|+|++.
T Consensus 12 ~~~~vvikt~pG~A~~va~~iD~~---~~~~I~Gt 43 (70)
T PF02863_consen 12 SDNMVVIKTLPGNAQAVAAAIDQL---NLPEIFGT 43 (70)
T ss_dssp ESSEEEEEESTTCHHHHHHHHHHH---CGTTEEEE
T ss_pred cCCEEEEEeCCCcHHHHHHHHHhc---CCcccEEE
Confidence 466899999999999999999998 46777654
No 36
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=30.61 E-value=26 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCccceEEEEeCCCCC
Q psy13881 103 MTKWIRENHPYEVCEVISMPITQGN 127 (140)
Q Consensus 103 L~~~I~e~HPYevPeIi~~~i~~~~ 127 (140)
+.+.+...||||.|+=-++.+-+.+
T Consensus 27 ~~~~~~~~hrY~eP~G~AVKV~~~~ 51 (71)
T PF14004_consen 27 VSDEYEPYHRYDEPEGSAVKVFQME 51 (71)
T ss_pred HHHHhccCCCCCCCCCceEeeeccC
Confidence 4567888999999987777765544
No 37
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=30.31 E-value=65 Score=26.09 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=34.1
Q ss_pred CCeecccceeeeEE-EeccccHHHHHHHHHHhCCCccceEEEEe
Q psy13881 80 EGKVNTDTEHMMII-KSRTSRLEDMTKWIRENHPYEVCEVISMP 122 (140)
Q Consensus 80 eGkie~~~E~~Lli-KT~~~~~~~L~~~I~e~HPYevPeIi~~~ 122 (140)
=|.+++ .+.+.+ |-..+.++++.+.-++.||.|+-.+++.+
T Consensus 61 Yg~~~~--~~~~~~g~Ip~~l~~~ii~hAr~~~P~EacG~Iag~ 102 (192)
T TIGR03735 61 YGAVEE--TLEFLCGPIPASLLEEFAEAARAALPNEVAAWIVWN 102 (192)
T ss_pred ceeeee--eEEEecCCCCHHHHHHHHHHHHhcCCcceEEEEEEc
Confidence 388877 444445 67788999999999999999999999986
No 38
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=29.26 E-value=1.1e+02 Score=26.42 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=25.3
Q ss_pred eEEEEEeCCCHHHHHHHHHHHhhCceeeEE
Q psy13881 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACV 67 (140)
Q Consensus 38 ~~iV~tT~p~~e~A~~iAr~Lve~rLaACv 67 (140)
++++.=..||.++|.+|++.+.++++..+.
T Consensus 130 va~ivG~a~~~e~~~~I~~e~q~r~~lv~l 159 (287)
T cd01917 130 EAVILGRAKDSKALKKIVDDLMGRGFMLFL 159 (287)
T ss_pred EEEEEecCCChHHHHHHHHHHHHCCcEEEE
Confidence 455556667999999999999999998876
No 39
>PF09961 DUF2195: Uncharacterized protein conserved in bacteria (DUF2195); InterPro: IPR018696 This family of various bacterial proteins has no known function.
Probab=28.33 E-value=21 Score=27.06 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=24.7
Q ss_pred HHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEecccc
Q psy13881 54 LAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSR 99 (140)
Q Consensus 54 iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~ 99 (140)
-+..-++++|+||+.+.|+-. +..+-.+.+||+-+.
T Consensus 17 ag~i~~~N~LaaCv~~~~~~~----------~~~~n~v~l~~~~~l 52 (121)
T PF09961_consen 17 AGTIQFDNALAACVDVKPGQP----------QTADNQVSLKATFSL 52 (121)
T ss_pred cCceEEeCcHHHHhcCcccCc----------cccCCeEEEEEEEEE
Confidence 334568999999999988544 445556667766443
No 40
>KOG3793|consensus
Probab=28.08 E-value=52 Score=28.74 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=57.0
Q ss_pred ccchhHHHHHHH--HhhhccccccccccccccCCCceEEEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEE-EeeC
Q psy13881 4 LKLPGLILIPLI--SQISKFSASTCTKAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSV-YKWE 80 (140)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~-Y~We 80 (140)
++-|+|.-|++= +|.+.| -.-+.+||+-.+ +..+++-|.|+.|.-.++++..+|.==|+=-.-...|.-. |=.
T Consensus 76 ~~~~~L~~~~ieevrqVGSF--~k~T~~tg~~~a-dvVViLkTLPt~EaV~aLg~Kv~e~lka~d~~Evltvl~~e~G~- 151 (362)
T KOG3793|consen 76 LVAPGLFEVQIEEVRQVGSF--KKGTMTTGHNVA-DLVVILKTLPTLEAVAALGNKVVESLRAQDPSEVLTVLTNETGF- 151 (362)
T ss_pred hccCCceEeehhhhhhccce--eccccccCCccc-ceEEEeecCCcHHHHHHHHHHHHHHhhhcChHHHHHHHhhccce-
Confidence 456776666654 666633 334455666444 4788999999999999999998876444321110000000 000
Q ss_pred CeecccceeeeEEEeccccHHHHHH
Q psy13881 81 GKVNTDTEHMMIIKSRTSRLEDMTK 105 (140)
Q Consensus 81 Gkie~~~E~~LliKT~~~~~~~L~~ 105 (140)
.--..+.-++++|-|...+..+|+-
T Consensus 152 ~I~s~~~~VRiLIt~iP~n~~KLEP 176 (362)
T KOG3793|consen 152 EISSSDATVRILITTVPPNLRKLEP 176 (362)
T ss_pred eeecccceEEEEEeecCchhcccCh
Confidence 0113456678888887776665543
No 41
>PF08076 TetM_leader: Tetracycline resistance determinant leader peptide; InterPro: IPR012992 The antibiotic tetracycline has a broad spectrum of activity, acting to inhibit bacterial protein synthesis by binding to the 30S ribosomal subunit, which prevents the association of the aminoacyl-tRNA to the ribosomal acceptor A site. Tetracycline binding is reversible, therefore diluting out the antibiotic can reverse its effects. Tetracycline resistance genes are often located on mobile elements, such as plasmids, transposons and/or conjugative transposons, which can sometimes be transferred between bacterial species. In certain cases, tetracycline can enhance the transfer of these elements, thereby promoting resistance amongst a bacterial colony. There are three types of tetracycline resistance: tetracycline efflux, ribosomal protection, and tetracycline modification [, ]: Tetracycline efflux proteins belong to the major facilitator superfamily. Efflux proteins are membrane-associated proteins that recognise and export tetracycline from the cell. They are found in both Gram-positive and Gram-negative bacteria []. There are at least 22 different tetracycline efflux proteins, grouped according to sequence similarity: Group 1 are Tet(A), Tet(B), Tet(C), Tet(D), Tet(E), Tet(G), Tet(H), Tet(J), Tet(Z) and Tet(30); Group 2 are Tet(K) and Tet(L); Group 3 are Otr(B) and Tcr(3); Group 4 is TetA(P); Group 5 is Tet(V). In addition, there are the efflux proteins Tet(31), Tet(33), Tet(V), Tet(Y), Tet(34), and Tet(35). Ribosomal protection proteins are cytoplasmic proteins that display homology with the elongation factors EF-Tu and EF-G. Protection proteins bind the ribosome, causing an alteration in ribosomal conformation that prevents tetracycline from binding. There are at least ten ribosomal protection proteins: Tet(M), Tet(O), Tet(S), Tet(W), Tet(32), Tet(36), Tet(Q), Tet(T), Otr(A), and TetB(P). Both Tet(M) and Tet(O) have ribosome-dependent GTPase activity, the hydrolysis of GTP providing the energy for the ribosomal conformational changes. Tetracycline modification proteins include the enzymes Tet(37) and Tet(X), both of which inactivate tetracycline. In addition, there are the tetracycline resistance proteins Tet(U) and Otr(C). The expression of several of these tet genes is controlled by a family of tetracycline transcriptional regulators known as TetR. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity []. The TetR proteins identified in over 115 genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the tetracycline resistance leader peptide, which can be found in Tet(M) ribosomal protection proteins. A short open reading frame corresponding to a 28 amino acid peptide, which contains a number of inverted repeat sequences was found immediately upstream of tet(M). Transcriptional analyses has found that expression of tet(M) resulted from an extension of a small transcript representing the upstream leader region into the resistance determinant. Therefore, this leader sequence is responsible for transcriptional attenuation and thus regulation of the transcription of tet(M) [].
Probab=26.55 E-value=34 Score=19.66 Aligned_cols=13 Identities=38% Similarity=0.997 Sum_probs=10.3
Q ss_pred eeeCCceEEEeeC
Q psy13881 68 NIIPGVKSVYKWE 80 (140)
Q Consensus 68 ni~p~V~S~Y~We 80 (140)
..+|.=.|+|.|+
T Consensus 9 ~~fP~D~S~y~WD 21 (28)
T PF08076_consen 9 HHFPSDKSIYHWD 21 (28)
T ss_pred ccCCCccceeehh
Confidence 3467778999997
No 42
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.05 E-value=96 Score=23.28 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.7
Q ss_pred EEeCCCHHHHHHHHHHHhhCcee
Q psy13881 42 YVTTPSDEVATKLAEGLLSQNLA 64 (140)
Q Consensus 42 ~tT~p~~e~A~~iAr~Lve~rLa 64 (140)
...+.|.|.|++|||.-+-++|.
T Consensus 79 VFNaes~EHA~RIAK~eIGk~L~ 101 (115)
T COG1885 79 VFNAESDEHAERIAKAEIGKALK 101 (115)
T ss_pred EecCCCHHHHHHHHHHHHhhHhh
Confidence 45678999999999999988874
No 43
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=24.98 E-value=81 Score=29.31 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=26.3
Q ss_pred eccccHHHHHHHHHHhCCCccceEEEEeCCCCCh
Q psy13881 95 SRTSRLEDMTKWIRENHPYEVCEVISMPITQGNP 128 (140)
Q Consensus 95 T~~~~~~~L~~~I~e~HPYevPeIi~~~i~~~~~ 128 (140)
.-...++.+.+.- +.|-|++|+||.|.+...+.
T Consensus 458 ~w~T~~e~i~~~f-~~aGY~~P~iVFWNl~~~~~ 490 (534)
T PF11443_consen 458 PWETNFEAIKRKF-EEAGYELPEIVFWNLRGRSS 490 (534)
T ss_pred ccccHHHHHHHHH-HHhCCCCCceEEeecCCCCC
Confidence 3456788888877 67999999999999877554
No 44
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=24.72 E-value=1e+02 Score=22.74 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.4
Q ss_pred EEeCCCHHHHHHHHHHHhhCce
Q psy13881 42 YVTTPSDEVATKLAEGLLSQNL 63 (140)
Q Consensus 42 ~tT~p~~e~A~~iAr~Lve~rL 63 (140)
...+.|.|.|.||||.-+-++|
T Consensus 77 VfnAes~EHA~RIAKs~iGkaL 98 (102)
T PF04475_consen 77 VFNAESEEHAERIAKSEIGKAL 98 (102)
T ss_pred EeecCCHHHHHHHHHHHHhHHh
Confidence 3457899999999999887765
No 45
>PRK11178 uridine phosphorylase; Provisional
Probab=24.69 E-value=1.5e+02 Score=24.23 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=44.0
Q ss_pred EEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCCccceEEE
Q psy13881 41 SYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVIS 120 (140)
Q Consensus 41 V~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPYevPeIi~ 120 (140)
+.+.+++.++++.|++.|-+.+..+ ....+..|.|.+. +.+ +.++.|--.....-. .+.++.-+.+=.||.
T Consensus 19 i~Ii~g~p~e~~~ia~~l~~~~~~~------~~~~~~~~~G~~~-g~~-v~v~~~GiG~~~Aa~-~~~eLi~~g~~~iI~ 89 (251)
T PRK11178 19 LAIVPGDPERVEKIAALMDNPVFLA------SHREFTSWRAELD-GKP-VIVCSTGIGGPSTSI-AVEELAQLGVRTFLR 89 (251)
T ss_pred EEEECCCHHHHHHHHHHhccchhee------eccCeEEEEEEEc-CEE-EEEEecCCCHHHHHH-HHHHHHHcCCCEEEE
Confidence 6778899999999998664444221 2466777888873 334 445555554433322 234444455555665
Q ss_pred EeCC
Q psy13881 121 MPIT 124 (140)
Q Consensus 121 ~~i~ 124 (140)
+-..
T Consensus 90 ~Gta 93 (251)
T PRK11178 90 IGTT 93 (251)
T ss_pred Eecc
Confidence 5443
No 46
>PRK03922 hypothetical protein; Provisional
Probab=23.36 E-value=73 Score=23.94 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.4
Q ss_pred EeCCCHHHHHHHHHHHhhCce
Q psy13881 43 VTTPSDEVATKLAEGLLSQNL 63 (140)
Q Consensus 43 tT~p~~e~A~~iAr~Lve~rL 63 (140)
..+.|.|.|.||||.-+-++|
T Consensus 80 FnAes~EHA~RIAK~eIG~aL 100 (113)
T PRK03922 80 FNAESEEHASRIAKSEIGKAL 100 (113)
T ss_pred eecCCHHHHHHHHHHHHhhHH
Confidence 567899999999999988776
No 47
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=22.76 E-value=63 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=17.1
Q ss_pred eCCCHHHHHHHHHHHhhCce
Q psy13881 44 TTPSDEVATKLAEGLLSQNL 63 (140)
Q Consensus 44 T~p~~e~A~~iAr~Lve~rL 63 (140)
+.++.+.|++++..||.+|+
T Consensus 49 ~~~~~~~A~k~~~Klv~eK~ 68 (77)
T cd07998 49 APVTLEAAEKIFDKLVKSKT 68 (77)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 34689999999999998875
No 48
>cd04087 PTPA Phosphotyrosyl phosphatase activator (PTPA) is also known as protein phosphatase 2A (PP2A) phosphatase activator. PTPA is an essential, well conserved protein that stimulates the tyrosyl phosphatase activity of PP2A. It also reactivates the serine/threonine phosphatase activity of an inactive form of PP2A. Together, PTPA and PP2A constitute an ATPase. It has been suggested that PTPA alters the relative specificity of PP2A from phosphoserine/phosphothreonine substrates to phosphotyrosine substrates in an ATP-hydrolysis-dependent manner. Basal expression of PTPA is controlled by the transcription factor Yin Yang1 (YY1). PTPA has been suggested to play a role in the insertion of metals to the PP2A catalytic subunit (PP2Ac) active site, to act as a chaperone, and more recently, to have peptidyl prolyl cis/trans isomerase activity that specifically targets human PP2Ac.
Probab=20.70 E-value=1.3e+02 Score=25.46 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=28.2
Q ss_pred EeccccHHHHHHHHHHhCCCccceEEEEeCCCCChhHHHHHhh
Q psy13881 94 KSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISD 136 (140)
Q Consensus 94 KT~~~~~~~L~~~I~e~HPYevPeIi~~~i~~~~~~Yl~Wi~~ 136 (140)
+..-+.++.|.+.|.+..|=+- |-..||.+|.+|.++
T Consensus 29 ~~l~~il~~l~~~i~e~PP~~~------~~RfGN~afR~w~~~ 65 (266)
T cd04087 29 EKLVEILDQLDALIDETPPIDQ------PSRFGNKAFRTWHDK 65 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC------CcccCCHHHHHHHHH
Confidence 3344567888888888877543 778999999999754
No 49
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=20.67 E-value=2.6e+02 Score=22.21 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=43.2
Q ss_pred eCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHHHHHHHHhCCCccc
Q psy13881 44 TTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVC 116 (140)
Q Consensus 44 T~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L~~~I~e~HPYevP 116 (140)
..=+.+.|++|.+.+=+.+|=.=++| +++++++.=|.+.++ .++++++++. .|++|
T Consensus 98 ~GI~~e~AKkIvK~IKd~klKVqa~I---------------QGd~vRVtgKkrDDL-Q~viallk~~-d~~~p 153 (161)
T PRK05412 98 QGIDQELAKKIVKLIKDSKLKVQAQI---------------QGDQVRVTGKKRDDL-QAVIALLRKA-DLGQP 153 (161)
T ss_pred hccCHHHHHHHHHHHHhcCCceeEEe---------------cCcEEEEecCCHhHH-HHHHHHHHhc-cCCCC
Confidence 33478899999999999999855555 356888888887774 7778888865 57766
No 50
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=20.16 E-value=3.5e+02 Score=19.61 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=46.3
Q ss_pred EEEEeCCCHHHHHHHHHHHhhCceeeEEeeeCCceEEEeeCCeecccceeeeEEEeccccHHHH---HHHHHHhCCCccc
Q psy13881 40 VSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDM---TKWIRENHPYEVC 116 (140)
Q Consensus 40 iV~tT~p~~e~A~~iAr~Lve~rLaACvni~p~V~S~Y~WeGkie~~~E~~LliKT~~~~~~~L---~~~I~e~HPYevP 116 (140)
+|+.+..+.+-|++||+.|=-.---.+...||.=+..-+=++.+. ++++.++--+..+.=+.+ .-.+....-+..-
T Consensus 2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~-g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~ 80 (116)
T PF13793_consen 2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVR-GKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAK 80 (116)
T ss_dssp EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--T-TSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBS
T ss_pred EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEeccccc-CCceEEEEecCCchhHHHHHHHHHHHHHHHcCCc
Confidence 466677788899999999965555567777887777777777666 667777777766433443 3334444444444
Q ss_pred eEEEE
Q psy13881 117 EVISM 121 (140)
Q Consensus 117 eIi~~ 121 (140)
.|..+
T Consensus 81 ~i~~V 85 (116)
T PF13793_consen 81 RITLV 85 (116)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 44433
No 51
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=20.05 E-value=1.1e+02 Score=21.97 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHhhCceeeEEe
Q psy13881 46 PSDEVATKLAEGLLSQNLAACVN 68 (140)
Q Consensus 46 p~~e~A~~iAr~Lve~rLaACvn 68 (140)
.++++|-++++.|+++++.-.|.
T Consensus 52 ~tR~~Av~l~q~Ll~~gvi~~V~ 74 (95)
T cd04446 52 VPRAKAVRLCQALMDCRVFEAVG 74 (95)
T ss_pred CCHHHHHHHHHHHHHcCCeeecc
Confidence 47999999999999999988873
Done!