RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13881
(140 letters)
>gnl|CDD|202531 pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several
gene loci with a possible involvement in cellular
tolerance to copper have been identified. One such locus
in eubacteria and archaebacteria, cutA, is thought to be
involved in cellular tolerance to a wide variety of
divalent cations other than copper. The cutA locus
consists of two operons, of one and two genes. The CutA1
protein is a cytoplasmic protein, encoded by the
single-gene operon and has been linked to divalent
cation tolerance. It has no recognised structural
motifs. This family also contains putative proteins from
eukaryotes (human and Drosophila).
Length = 102
Score = 140 bits (354), Expect = 2e-44
Identities = 48/102 (47%), Positives = 70/102 (68%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
V VT P +E A KLA L+ + LAACVNI+PG+KS+Y WEGK+ D+E ++IIK+ +
Sbjct: 1 SIVVLVTAPDEESAEKLARKLVEERLAACVNIVPGIKSIYWWEGKIEEDSEVLLIIKTSS 60
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVP 139
+ + + ++E HPYEV E+I++PI GNP YL W+ +V
Sbjct: 61 EKFPALEERVKELHPYEVPEIIALPIENGNPDYLNWLDQSVK 102
>gnl|CDD|224243 COG1324, CutA, Uncharacterized protein involved in tolerance to
divalent cations [Inorganic ion transport and
metabolism].
Length = 104
Score = 121 bits (306), Expect = 6e-37
Identities = 45/102 (44%), Positives = 69/102 (67%)
Query: 37 THSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSR 96
+ T P +E A ++A LL + LAACVNIIPG+KS+Y WEGK+ D E +IIK+
Sbjct: 2 MMVLVLTTAPDEESAERIARKLLEERLAACVNIIPGIKSIYWWEGKIEEDEEVALIIKTT 61
Query: 97 TSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + E++ + I+E HPYEV E+I++P+ G P YL+W+++
Sbjct: 62 SEKFEELIERIKELHPYEVPEIIALPVDNGLPEYLEWLNEET 103
>gnl|CDD|182614 PRK10645, PRK10645, divalent-cation tolerance protein CutA;
Provisional.
Length = 112
Score = 87.1 bits (216), Expect = 3e-23
Identities = 33/93 (35%), Positives = 59/93 (63%)
Query: 44 TTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDM 103
T P + A LA +L++ LAACV ++PG S+Y WEGK+ + E M++K+ S + +
Sbjct: 17 TAPDEATAQDLAAKVLAEKLAACVTLLPGATSLYYWEGKLEQEYEVQMLLKTTVSHQQAL 76
Query: 104 TKWIRENHPYEVCEVISMPITQGNPPYLQWISD 136
+ ++ +HPY+ E++ +P+T G+ YL W++
Sbjct: 77 LECLKSHHPYQTPELLVLPVTHGDTDYLSWLNA 109
>gnl|CDD|214919 smart00932, Nfu_N, Scaffold protein Nfu/NifU N terminal. This
domain is found at the N terminus of NifU and NifU
related proteins, and in the human Nfu protein. Both of
these proteins are thought to be involved in the the
assembly of iron-sulphur clusters.
Length = 88
Score = 28.3 bits (64), Expect = 0.49
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 39 SVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVY 77
S + + A+ LA+ L IPGVKSV+
Sbjct: 25 SAEFKSADEAAEASPLAQKLFE---------IPGVKSVF 54
>gnl|CDD|226710 COG4259, COG4259, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 121
Score = 27.6 bits (61), Expect = 1.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 52 TKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIRE 109
++LA L LA C G KS+Y+WEG +T E+ +S+ ++ + K++ +
Sbjct: 8 SRLALLLAVAALAGCGG---GPKSLYQWEGYQDTVYEYFKGDESKEAQTAALEKYLEK 62
>gnl|CDD|187889 cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily
protein Cas6. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6 is an endoribonuclease that generates crRNAs,
predicted subunit of Cascade complex; RAMP superfamily
protein; Possesses double RRM/ferredoxin fold.
Length = 240
Score = 27.7 bits (62), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 42 YVTTPSDEVATKLAEGLLS 60
Y ++P+ EV L EGLL
Sbjct: 80 YFSSPNPEVIESLVEGLLE 98
>gnl|CDD|173918 cd02167, NMNAT_NadR, Nicotinamide/nicotinate mononucleotide
adenylyltransferase of bifunctional NadR-like proteins.
NMNAT domain of NadR protein. The NadR protein (NadR) is
a bifunctional enzyme possessing both NMN
adenylytransferase (NMNAT) and ribosylnicotinamide
kinase (RNK) activities. Its function is essential for
the growth and survival of H. influenzae and thus may
present a new highly specific anti-infectious drug
target. The N-terminal domain that hosts the NMNAT
activity is closely related to archaeal NMNAT. The bound
NAD at the active site of the NMNAT domain reveals
several critical interactions between NAD and the
protein.The NMNAT domain of hiNadR defines yet another
member of the pyridine nucleotide adenylyltransferase.
Length = 158
Score = 26.7 bits (59), Expect = 3.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPY 130
LE +W+RE P + V+ P Y
Sbjct: 48 LEKRLRWLREIFPDQENIVVHTLNEPDIPEY 78
>gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 26.8 bits (59), Expect = 5.8
Identities = 10/20 (50%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Query: 100 LEDMTKWIRENHPYEVCEVI 119
LED+ K+I+ENH ++ C +I
Sbjct: 667 LEDIDKFIKENH-FDECGII 685
>gnl|CDD|215264 PLN02475, PLN02475,
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase.
Length = 766
Score = 26.3 bits (58), Expect = 6.9
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 19/87 (21%)
Query: 50 VATKLAEGLLSQNLAACVNIIP------------------GVKSVYKWE-GKVNTDTEHM 90
VA L + Q AA + IP V Y W G++ D
Sbjct: 37 VAADLRSSIWKQMSAAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWTGGEIGFDVYFS 96
Query: 91 MIIKSRTSRLEDMTKWIRENHPYEVCE 117
M + + +MTKW N+ Y V E
Sbjct: 97 MARGNASVPAMEMTKWFDTNYHYIVPE 123
>gnl|CDD|187783 cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP
superfamily protein Cas6. CRISPR (Clustered Regularly
Interspaced Short Palindromic Repeats) and associated
Cas proteins comprise a system for heritable host
defense by prokaryotic cells against phage and other
foreign DNA; Cas6 is an endoribonuclease that generates
crRNAs, predicted subunit of Cascade complex; RAMP
superfamily protein; Possesses double RRM/ferredoxin
fold.
Length = 190
Score = 25.9 bits (57), Expect = 8.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 42 YVTTPSDEVATKLAEGLLSQN 62
Y+++ +E+ L EGLL
Sbjct: 31 YISSLDEEIINYLYEGLLKLP 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.130 0.391
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,745,041
Number of extensions: 549324
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 12
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.4 bits)