RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13881
(140 letters)
>1naq_A Periplasmic divalent cation tolerance protein CUTA; copper
resistance, structural proteomics in europe, spine,
structural genomics; HET: MBO; 1.70A {Escherichia coli}
SCOP: d.58.5.2 PDB: 3ah6_A 3aa9_A 3aa8_A 3opk_A
Length = 112
Score = 134 bits (338), Expect = 5e-42
Identities = 35/107 (32%), Positives = 61/107 (57%)
Query: 32 SYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMM 91
V T P + A LA +L++ LAAC +IPG S+Y WEGK+ + E M
Sbjct: 5 KSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQM 64
Query: 92 IIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
I+K+ S + + + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 65 ILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 111
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
signaling protein; 2.00A {Cryptosporidium parvum}
Length = 138
Score = 135 bits (340), Expect = 6e-42
Identities = 34/119 (28%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 22 SASTCTKAAM--SYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKW 79
+ + M + + Y++ P+ + AT +A+ L+ + L ACV+IIP V+S+YK+
Sbjct: 18 GPGSMINSNMTETKIESNIILIYISAPNQDEATSIAKTLVDEELCACVSIIPSVRSIYKF 77
Query: 80 EGKVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+G+V+ + E M+++K+ + + + + E H YE+ E+I+ + GN Y+ W++ V
Sbjct: 78 KGQVHDENEVMLLVKTTSQLFTTLKEKVTEIHSYELPEIIATKVVYGNENYINWVNQTV 136
>1nza_A CUTA, divalent cation tolerance protein; cellular tolerance,
monomer, structural genomics, RIKE structural
genomics/proteomics initiative; 1.70A {Thermus
thermophilus} SCOP: d.58.5.2 PDB: 1v6h_A
Length = 103
Score = 132 bits (335), Expect = 1e-41
Identities = 40/101 (39%), Positives = 68/101 (67%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
V +T PS+EVA +A+ L+ + LAACVNI+PG+ S+Y+W+G+V D E ++++K+ T
Sbjct: 2 EEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTT 61
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + ++ HPY V E++++PI +GN YL W+ +N
Sbjct: 62 HAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown
function; 1.39A {Xylella fastidiosa}
Length = 118
Score = 131 bits (332), Expect = 5e-41
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 35 PGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIK 94
+ + T P A ++ L+ + LAACV +PG S Y+W+GK+ T E ++IK
Sbjct: 2 ASDVYLIFSTCPDLPSAEIISRVLVQERLAACVTQLPGAVSTYRWQGKIETTQEIQLLIK 61
Query: 95 SRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVPP 140
+ + + HPY + E I++ ++ G P YL WI+ +
Sbjct: 62 TNAVHVNAAITRLCALHPYRLPEAIAVQVSVGLPEYLTWINTEIDE 107
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis
CO92}
Length = 122
Score = 131 bits (332), Expect = 6e-41
Identities = 33/97 (34%), Positives = 59/97 (60%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
T P + A LA +L + LAACV ++PG S+Y WEGK+ + E ++ KS T +
Sbjct: 25 LCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQ 84
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ +I+++HPY+ E++ +P+ G+ YL W++ ++
Sbjct: 85 ALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNASL 121
>2zom_A CUTA1, protein CUTA, chloroplast, putative, expressed; trimeric
structure, protein stability, unknown function; 3.02A
{Oryza sativa subsp}
Length = 113
Score = 130 bits (328), Expect = 2e-40
Identities = 50/104 (48%), Positives = 73/104 (70%)
Query: 37 THSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSR 96
V YVT P+ E +LA ++S+ LAACVNI+PG++SVY WEGKV TD E ++IIK+R
Sbjct: 9 PSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTR 68
Query: 97 TSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVPP 140
S L+ +T+ ++ NH Y+V EVI++PI GN YL+W+ ++
Sbjct: 69 ESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 112
>1vhf_A Periplasmic divalent cation tolerance protein; structural genomics,
unknown function; 1.54A {Thermotoga maritima} SCOP:
d.58.5.2
Length = 113
Score = 129 bits (326), Expect = 4e-40
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 37 THSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSR 96
+ + Y T P++E A ++ LL + L AC N ++S Y W+G++ D E I K+
Sbjct: 2 SLILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAIFKTT 60
Query: 97 TSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVPP 140
+ +++ + +R+ HPYE + ++ + Y+ W+ ++V
Sbjct: 61 EEKEKELYEELRKLHPYETPAIFTLKVENVLTEYMNWLRESVLE 104
>1osc_A Similar to divalent cation tolerant protein CUTA; copper
resistance, structural proteomics in europe, spine,
structural genomics; 2.15A {Rattus norvegicus} SCOP:
d.58.5.2
Length = 126
Score = 130 bits (327), Expect = 4e-40
Identities = 48/119 (40%), Positives = 82/119 (68%)
Query: 22 SASTCTKAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEG 81
+ + Y PG+ S ++VT P+++VA ++A ++ + LAACVN+IP + S+Y+W+G
Sbjct: 7 PSQPSPASGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKG 66
Query: 82 KVNTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVPP 140
K+ D+E +M+IK+++S + +T+++R HPYEV EVI++P+ QGNPPYL W+
Sbjct: 67 KIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTES 125
>1kr4_A Protein TM1056, CUTA; structural genomics, PSI, protein structure
initiative center for structural genomics, MCSG, unknown
function; 1.40A {Thermotoga maritima} SCOP: d.58.5.2
Length = 125
Score = 129 bits (326), Expect = 5e-40
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 32 SYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMM 91
Y G + Y T P++E A ++ LL + L AC N ++S Y W+G++ D E
Sbjct: 17 LYFMGHMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAA 75
Query: 92 IIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
I K+ + +++ + +R+ HPYE + ++ + Y+ W+ ++V
Sbjct: 76 IFKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRESV 122
>3ahp_A CUTA1; thermostable protein, electron transport; 2.70A {Shewanella}
Length = 108
Score = 126 bits (318), Expect = 6e-39
Identities = 39/98 (39%), Positives = 55/98 (56%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
+ T P ++A ++A L+ LAACV I V+S+Y+W+ + E M IK T+
Sbjct: 10 FTTCPDADIACRIATALVEAKLAACVQIGQAVESIYQWDNNICQSHEVPMQIKCMTTDYP 69
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVP 139
+ + + HPYEV E I+ PI G PYLQWI DN P
Sbjct: 70 AIEQLVITMHPYEVPEFIATPIIGGFGPYLQWIKDNSP 107
>2zfh_A CUTA; human brain, trimeric structure, structural genomics; 2.05A
{Homo sapiens} SCOP: d.58.5.2 PDB: 1xk8_A
Length = 179
Score = 128 bits (323), Expect = 7e-39
Identities = 49/117 (41%), Positives = 82/117 (70%)
Query: 24 STCTKAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKV 83
S + + Y PG+ S ++VT P+++VA ++A ++ + LAACVN+IP + S+Y+W+GK+
Sbjct: 54 SPASDSGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKI 113
Query: 84 NTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVPP 140
D+E +M+IK+++S + +T ++R HPYEV EVI++P+ QGN PYLQW+
Sbjct: 114 EEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTES 170
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC,
PSI, protein structure initiative; 2.00A {Archaeoglobus
fulgidus} SCOP: d.58.5.2
Length = 102
Score = 124 bits (313), Expect = 3e-38
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
H+ Y+T PS E A ++A+ LL + LAACVNI P +KS + WEGK+ TE MI+K+R+
Sbjct: 2 HNFIYITAPSLEEAERIAKRLLEKKLAACVNIFP-IKSFFWWEGKIEAATEFAMIVKTRS 60
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ ++ ++ H Y + ++PI +G +L WI + V
Sbjct: 61 EKFAEVRDEVKAMHSYTTPCICAIPIERGLKEFLDWIDETV 101
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.95A {Thermotoga maritima}
SCOP: d.58.5.2
Length = 113
Score = 124 bits (312), Expect = 5e-38
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 31 MSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHM 90
+ + + Y T P++E A ++ LL + L AC N ++S Y W+G++ D E
Sbjct: 6 IHHHHHHMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWA 64
Query: 91 MIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
I K+ + +++ + +R+ HPYE + ++ + Y+ W+ ++V
Sbjct: 65 AIFKTTEEKEKELYEELRKLHPYETPAIFTLKVENVLTEYMNWLRESV 112
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper
tolerance, structural genomics, metal binding P; 1.45A
{Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A
1v99_A* 1v9b_A 1j2v_A 2e66_A
Length = 102
Score = 117 bits (295), Expect = 1e-35
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
Y T P E A K+ + LL + L AC N+ ++ Y WEGK+ D E I+K+R E
Sbjct: 5 YTTFPDWESAEKVVKTLLKERLIACANLRE-HRAFYWWEGKIEEDKEVGAILKTREDLWE 63
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
++ + I+E HPY+V +I + + N YL+W+ +
Sbjct: 64 ELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEET 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.28
Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 39/146 (26%)
Query: 7 PGLILIPLISQISKFSASTCTKAAMSYEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAAC 66
P +L L + ++ + S + + +L L S+ C
Sbjct: 195 PETVLEML--------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 67 VNIIPGVKSVYKWEG-------------KVNTD------TEHMMIIKSRTSRLEDMT--- 104
+ ++ V++ W K TD T H+ + + D
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 105 --KWIRENH---PYEVCE----VISM 121
K++ P EV +S+
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSI 332
Score = 29.1 bits (64), Expect = 0.59
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 77 YKW-EGKVNTDTEHMMIIKSRTSRLEDMTKW---IRENHP-YE 114
+++ E K+ D+ S + L+ + + I +N P YE
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 28.7 bits (63), Expect = 0.76
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 30/122 (24%)
Query: 5 KLPGLIL--IPL-ISQISKFSASTCTKAAMSYEPGTHSVSYVTTPSDEVAT-------KL 54
LP +L P +S I A + ++ D++ T L
Sbjct: 317 DLPREVLTTNPRRLSII----------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 55 AEGLLSQNLAAC------VNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDMTKWIR 108
+ +I + S+ W + +D ++ + S +E K +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKSDVMVVVNKLHKYSLVE---KQPK 422
Query: 109 EN 110
E+
Sbjct: 423 ES 424
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.69
Identities = 24/148 (16%), Positives = 52/148 (35%), Gaps = 29/148 (19%)
Query: 2 LTLKLPGL---ILIP-----LISQI-SKFSAS--TCTKA-AMSYEPGT------HSVSYV 43
LTL L +L+P + SQ+ +F+ T+ A EP T + YV
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 44 TTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLEDM 103
++ + + +L+ L ++ Y ++ + ++ + L
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTE-------FENCYLEGNDIHALAAKL--LQENDTTLVKT 119
Query: 104 TKWIRENHPYEVCEVISMPITQGNPPYL 131
+ I+ N+ + P + + L
Sbjct: 120 KELIK-NY-ITARIMAKRPFDKKSNSAL 145
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 26.9 bits (60), Expect = 2.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 39 SVSYVTTPSDEVATKLAEGLLSQNLAACVNIIP 71
+ Y SDEV+TK+ NL V +P
Sbjct: 74 RLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLP 106
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, unknown function; 1.90A {Bacillus cereus} SCOP:
a.118.1.17
Length = 235
Score = 26.5 bits (58), Expect = 3.4
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 90 MMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPP----YLQWISDN 137
+I + D +WI + Y + + + + +WI+
Sbjct: 69 GIIADPKAMSESDFDRWIDGAYFYMLSDYVVAVTLSESNIAQDVADKWIASG 120
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 25.4 bits (55), Expect = 8.6
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 97 TSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNVPP 140
T+R+ D T P T G +L +I + P
Sbjct: 84 TNRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAP 127
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 25.3 bits (55), Expect = 9.8
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 40 VSYVTTPSDEVATKLAEGLLSQNL 63
++ T DE KL + +++N
Sbjct: 47 ATFCQTWDDENVHKLMDLSINKNW 70
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein,
developmental regulation, cellular remodeling,
cytoskeleton, morphology; NMR {Mus musculus}
Length = 166
Score = 25.0 bits (54), Expect = 9.9
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 27 TKAAMSYEPGTHSVSYVTTP-SDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNT 85
+ +S + ++ V P S + L + LS+ V + +++
Sbjct: 9 VQTDVSVDTKHQTLQGVAFPISRDAFQALEK--LSKKQLNYV------------QLEIDI 54
Query: 86 DTEHMMIIKSRTSRLEDMTKWIRENHP 112
E +++ + + L D+ K I ++
Sbjct: 55 KNETIILANTENTELRDLPKRIPKDSA 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.391
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,043,192
Number of extensions: 103783
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 24
Length of query: 140
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 56
Effective length of database: 4,356,429
Effective search space: 243960024
Effective search space used: 243960024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)