RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13881
(140 letters)
>d2zfha1 d.58.5.2 (A:63-169) Mammalian CutA-like protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 143 bits (362), Expect = 4e-46
Identities = 48/106 (45%), Positives = 79/106 (74%)
Query: 33 YEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMI 92
Y PG+ S ++VT P+++VA ++A ++ + LAACVN+IP + S+Y+W+GK+ D+E +M+
Sbjct: 1 YVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMM 60
Query: 93 IKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
IK+++S + +T ++R HPYEV EVI++P+ QGN PYLQW+
Sbjct: 61 IKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 106
>d1nzaa_ d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 274]}
Length = 103
Score = 133 bits (337), Expect = 2e-42
Identities = 40/100 (40%), Positives = 68/100 (68%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
V +T PS+EVA +A+ L+ + LAACVNI+PG+ S+Y+W+G+V D E ++++K+ T
Sbjct: 2 EEVVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTT 61
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDN 137
+ + ++ HPY V E++++PI +GN YL W+ +N
Sbjct: 62 HAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLREN 101
>d1naqa_ d.58.5.2 (A:) Cut A1 {Escherichia coli [TaxId: 562]}
Length = 106
Score = 132 bits (333), Expect = 1e-41
Identities = 34/97 (35%), Positives = 60/97 (61%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
T P + A LA +L++ LAAC +IPG S+Y WEGK+ + E MI+K+ S +
Sbjct: 9 LCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQ 68
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ + ++ +HPY+ E++ +P+T G+ YL W++ ++
Sbjct: 69 ALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASL 105
>d1p1la_ d.58.5.2 (A:) Cut A1 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 102
Score = 126 bits (319), Expect = 1e-39
Identities = 39/101 (38%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 38 HSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRT 97
H+ Y+T PS E A ++A+ LL + LAACVNI P +KS + WEGK+ TE MI+K+R+
Sbjct: 2 HNFIYITAPSLEEAERIAKRLLEKKLAACVNIFP-IKSFFWWEGKIEAATEFAMIVKTRS 60
Query: 98 SRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
+ ++ ++ H Y + ++PI +G +L WI + V
Sbjct: 61 EKFAEVRDEVKAMHSYTTPCICAIPIERGLKEFLDWIDETV 101
>d1kr4a_ d.58.5.2 (A:) Hypothetical protein TM1056 {Thermotoga
maritima [TaxId: 2336]}
Length = 110
Score = 122 bits (307), Expect = 8e-38
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 33 YEPGTHSVSYVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMI 92
Y G + Y T P++E A ++ LL + L AC N ++S Y W+G++ D E I
Sbjct: 3 YFMGHMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFE-IRSGYWWKGEIVQDKEWAAI 61
Query: 93 IKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
K+ + +++ + +R+ HPYE + ++ + Y+ W+ ++V
Sbjct: 62 FKTTEEKEKELYEELRKLHPYETPAIFTLKVENILTEYMNWLRESV 107
>d1ukua_ d.58.5.2 (A:) Cut A1 {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 102
Score = 120 bits (302), Expect = 4e-37
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 42 YVTTPSDEVATKLAEGLLSQNLAACVNIIPGVKSVYKWEGKVNTDTEHMMIIKSRTSRLE 101
Y T P E A K+ + LL + L AC N+ ++ Y WEGK+ D E I+K+R E
Sbjct: 5 YTTFPDWESAEKVVKTLLKERLIACANL-REHRAFYWWEGKIEEDKEVGAILKTREDLWE 63
Query: 102 DMTKWIRENHPYEVCEVISMPITQGNPPYLQWISDNV 138
++ + I+E HPY+V +I + + N YL+W+ +
Sbjct: 64 ELKERIKELHPYDVPAIIRIDVDDVNEDYLKWLIEET 100
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 25.6 bits (55), Expect = 2.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 35 PGTHSVSYVTTPSDEVATKLAEGLLSQNLA 64
+ ++ T DE KL + +++N
Sbjct: 54 ARQNLATFCQTWDDENVHKLMDLSINKNWI 83
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 25.2 bits (55), Expect = 3.2
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 84 NTDTEHMMIIKSRTSRLEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISD 136
+ + ++ L+ + I E P + P GN +W
Sbjct: 57 HATASSIAMVNGLMGVLDKLAHLIDETPP------LPGPRRYGNLACREWHHK 103
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283
{Lactobacillus casei [TaxId: 1582]}
Length = 121
Score = 24.1 bits (52), Expect = 5.4
Identities = 4/29 (13%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 96 RTSRLEDMTKWIRENHPYEVCEVIS--MP 122
+R+E + ++ P ++ P
Sbjct: 15 DLTRVESLFANMQAQFP-QLKLEFKWNQP 42
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 24.3 bits (52), Expect = 5.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 99 RLEDMTKWIRENHPYE 114
R ED+ + HP++
Sbjct: 286 RREDIARHWHREHPFQ 301
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase
2A regulatory subunit B', PTPA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 24.0 bits (52), Expect = 7.9
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 6/37 (16%)
Query: 100 LEDMTKWIRENHPYEVCEVISMPITQGNPPYLQWISD 136
L + +WI E P + P GN Y W +
Sbjct: 59 LNTLDRWIDETPP------VDQPSRFGNKAYRTWYAK 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.391
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,121
Number of extensions: 19781
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 15
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)