BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13883
(908 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HD33|RM47_HUMAN 39S ribosomal protein L47, mitochondrial OS=Homo sapiens GN=MRPL47
PE=1 SV=2
Length = 250
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/82 (53%), Positives = 60/82 (73%)
Query: 317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
+ +HT+ L EFFD PKN+G E+V+ G +W ++LR KS+ DLHKLWYVLLKE+NML
Sbjct: 53 RLLHTTLSRKGLEEFFDDPKNWGQEKVKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNML 112
Query: 377 KTMEHECKEKFIVFPNPERIDK 398
T+E E K + + P+PER+DK
Sbjct: 113 LTLEQEAKRQRLPMPSPERLDK 134
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 12/140 (8%)
Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
YVLLKE+NML T+E E K + + P+PER+DKV +SM+ L+ V++ER A L+T
Sbjct: 103 YVLLKERNMLLTLEQEAKRQRLPMPSPERLDKVVDSMDALDKVVQEREDALRLLQTGQER 162
Query: 485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNN----PVIDNRTLAVKKFLVLLKEK 540
RP + FG + ++ +P LNK + + P +D+ FL L +EK
Sbjct: 163 ARPGAWRRDIFGRIIWHKFKQWVIPWHLNKRYNRKRFFALPYVDH-------FLRLEREK 215
Query: 541 LLKKEYAKMKNEEKEVAQIF 560
+ + A+ +N E++ A+I
Sbjct: 216 RARIK-ARKENLERKKAKIL 234
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELID 60
ML T+E E K + + P+PER+DKV +SM+ L+ V++ER A L+T RP
Sbjct: 111 MLLTLEQEAKRQRLPMPSPERLDKVVDSMDALDKVVQEREDALRLLQTGQERARPGAWRR 170
Query: 61 NAFVCILKDK 70
+ F I+ K
Sbjct: 171 DIFGRIIWHK 180
>sp|Q8K2Y7|RM47_MOUSE 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47
PE=2 SV=2
Length = 252
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/82 (54%), Positives = 60/82 (73%)
Query: 317 KAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
K +HT+ L EFFD PKN+G E+V+ G SW ++LR KS+ DLHKLWYVLLKE+NML
Sbjct: 55 KLLHTTLSRKGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNML 114
Query: 377 KTMEHECKEKFIVFPNPERIDK 398
T+E E K + + P+PER++K
Sbjct: 115 LTLEQEAKRQRLPMPSPERLEK 136
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
YVLLKE+NML T+E E K + + P+PER++KV +SM+N++ V++ER A L+T
Sbjct: 105 YVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDNVDKVVQEREDALRLLQTGQEK 164
Query: 485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNN----PVIDN----------RTLAV 530
RP + FG + ++ +P LNK + + P +D R A
Sbjct: 165 PRPGAWRRDIFGRIVWHKFKQWPIPWYLNKRYNRRRFFAMPYVDRFIRLRIEKHARIEAR 224
Query: 531 KKFLVLLKEKLLKKEYAKMKNEEKEVA 557
K+ L KEK+L ++ + E K +
Sbjct: 225 KRSLQKKKEKILHAKFPHLSQERKSSS 251
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELID 60
ML T+E E K + + P+PER++KV +SM+N++ V++ER A L+T RP
Sbjct: 113 MLLTLEQEAKRQRLPMPSPERLEKVVDSMDNVDKVVQEREDALRLLQTGQEKPRPGAWRR 172
Query: 61 NAFVCILKDK 70
+ F I+ K
Sbjct: 173 DIFGRIVWHK 182
>sp|Q08DT6|RM47_BOVIN 39S ribosomal protein L47, mitochondrial OS=Bos taurus GN=MRPL47
PE=2 SV=1
Length = 252
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 58/80 (72%)
Query: 319 IHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKT 378
+ T+ L EFFD PKN+G E+V+ G SW ++LR KS+ DLHKLWYVLLKE+NML T
Sbjct: 57 LQTTLSRRGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLT 116
Query: 379 MEHECKEKFIVFPNPERIDK 398
+E E K + + P+PER++K
Sbjct: 117 LEQEAKRQRLPMPSPERLEK 136
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 14/147 (9%)
Query: 425 YVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTG 484
YVLLKE+NML T+E E K + + P+PER++KV +SM+ L+ V++ER A L+T
Sbjct: 105 YVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQTGQEK 164
Query: 485 ERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNN----PVIDN----------RTLAV 530
RP + FG + ++ +P LNK + + P ++ R A
Sbjct: 165 PRPGAWRRDIFGRIIWHKFKQWPIPWYLNKRYNRKRFFAMPYVERFVRLRIEKQARIKAR 224
Query: 531 KKFLVLLKEKLLKKEYAKMKNEEKEVA 557
K L KEK L+K++ + +K A
Sbjct: 225 KISLTQKKEKFLQKKFPHLSEAQKSSA 251
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELID 60
ML T+E E K + + P+PER++KV +SM+ L+ V++ER A L+T RP
Sbjct: 113 MLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQTGQEKPRPGAWRR 172
Query: 61 NAFVCILKDK 70
+ F I+ K
Sbjct: 173 DIFGRIIWHK 182
>sp|P87232|RM04_SCHPO 54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl4 PE=3 SV=1
Length = 144
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 340 AEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFP 391
+E+ + GR+W EELR KS +DLH LWY L+E+N+L T E K + P
Sbjct: 52 SEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEMKRLQLTIP 103
>sp|Q2H080|RM04_CHAGB 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=MRPL4 PE=3 SV=1
Length = 272
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 328 LNEFFDSPK---NFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
L EFF + N E + GRSW EELR KS DLH+LW+V KE+N + T E
Sbjct: 99 LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158
Query: 385 EKFIVFPNPERIDKN 399
+ + F E +++
Sbjct: 159 KSGLGFGEAEMRERD 173
>sp|A2QCC7|RM04_ASPNC 54S ribosomal protein L4, mitochondrial OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=mrpl4 PE=3 SV=1
Length = 273
Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 343 VRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
+ GRSW +ELR KS DLH LW+V +KE+N + T + E K
Sbjct: 120 IECGRSWSIQELREKSWDDLHSLWWVCVKERNRIATSDMERK 161
>sp|A6SLT9|RM04_BOTFB 54S ribosomal protein L4, mitochondrial OS=Botryotinia fuckeliana
(strain B05.10) GN=mrpl4 PE=3 SV=1
Length = 252
Score = 47.4 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 328 LNEFF---DSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
L EFF D + AE+ GR W EELR KS DLH LW++ KE+N + T +E
Sbjct: 105 LYEFFRHKDKALSTPAEEGSHGRPWSAEELRGKSWEDLHSLWWICCKERNRIATESYE 162
>sp|A7EWR0|RM04_SCLS1 54S ribosomal protein L4, mitochondrial OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=MRPL4 PE=3 SV=1
Length = 191
Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 328 LNEFF---DSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
L EFF D + AE+ GR W EELR KS DLH LW++ KE+N + T +E
Sbjct: 44 LYEFFRHKDKALSTPAEEGNHGRPWSAEELRGKSWEDLHSLWWICCKERNRIATESYE 101
>sp|Q5B0N3|RM04_EMENI 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=mrpl4 PE=3 SV=1
Length = 219
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
GRSW +ELR KS DLH LW+V LKE+N + T E K
Sbjct: 123 GRSWSIQELREKSWEDLHSLWWVCLKEKNRIATSNLERK 161
>sp|Q7S910|RM04_NEUCR 54S ribosomal protein L4, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=mrpl-4 PE=3 SV=2
Length = 263
Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 341 EQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
E + GR+W ELR KS DLH+LW+V +KE+N + T E
Sbjct: 118 EHTKHGRAWTVSELRKKSWDDLHRLWWVCVKERNRIATANWE 159
>sp|A1C6F8|RM04_ASPCL 54S ribosomal protein L4, mitochondrial OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=mrpl4 PE=3 SV=1
Length = 217
Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
GRSW +ELR KS DLH LW+V +KE+N + T E
Sbjct: 123 GRSWSIQELREKSWDDLHSLWWVCVKERNRIATSNLE 159
>sp|A5E713|RM04_LODEL 54S ribosomal protein L4, mitochondrial OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=MRPL4 PE=3 SV=1
Length = 296
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
R W ELR KS DLH+LWY++LKE+N+L
Sbjct: 75 SREWTSAELRQKSFEDLHRLWYIILKERNIL 105
>sp|Q0CXX1|RM04_ASPTN 54S ribosomal protein L4, mitochondrial OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=mrpl4 PE=3 SV=1
Length = 214
Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
GRSW +ELR KS DLH LW+V +KE+N + T E
Sbjct: 123 GRSWSIQELREKSWEDLHALWWVCVKERNRIATSNLE 159
>sp|A1DH31|RM04_NEOFI 54S ribosomal protein L4, mitochondrial OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=mrpl4 PE=3 SV=1
Length = 217
Score = 43.9 bits (102), Expect = 0.005, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
GRSW +ELR KS DLH LW+V +KE+N + T E
Sbjct: 123 GRSWSIQELREKSWEDLHCLWWVCVKERNRIATSNLE 159
>sp|Q1DNY5|RM04_COCIM 54S ribosomal protein L4, mitochondrial OS=Coccidioides immitis
(strain RS) GN=MRPL4 PE=3 SV=1
Length = 245
Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 341 EQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
E+ GR+W +ELR KS DLH LW+V ++E+N + T +E K
Sbjct: 116 EEYAHGRAWTIQELRQKSWDDLHCLWWVTVRERNRIATSNYERK 159
>sp|Q4X156|RM04_ASPFU 54S ribosomal protein L4, mitochondrial OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=mrpl4 PE=3 SV=1
Length = 217
Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
GRSW +ELR KS DLH LW+V +KE+N + T E
Sbjct: 123 GRSWSIQELREKSWEDLHCLWWVCVKERNRIATSNLE 159
>sp|A5DH98|RM04_PICGU 54S ribosomal protein L4, mitochondrial OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=MRPL4 PE=3 SV=2
Length = 295
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
R+W ELR KS DLH+LWY++LKE+N+L
Sbjct: 73 SRAWTTAELRRKSFEDLHQLWYLVLKERNVL 103
>sp|Q6CF20|RM04_YARLI 54S ribosomal protein L4, mitochondrial OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=MRPL4 PE=3 SV=1
Length = 340
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 306 HIQMLRKHPIQKAIHTSSKLLDLNEFFDSPKNFGAEQVRVGRSWRKEELRVKSSSDLHKL 365
+I++ HP+ + K++ FDS R W ELR KS DLH L
Sbjct: 46 NIEVPDSHPLWQFFCKDKKIVRDQRSFDSST----------RPWSVAELRRKSFEDLHAL 95
Query: 366 WYVLLKEQNML 376
WYV LKE+N+L
Sbjct: 96 WYVCLKERNIL 106
>sp|Q6BQK3|RM04_DEBHA 54S ribosomal protein L4, mitochondrial OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=MRPL4 PE=3 SV=2
Length = 302
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
R W ELR KS DLHKLWY++LKE+N+L
Sbjct: 76 SRPWGLPELRRKSFEDLHKLWYLILKERNIL 106
>sp|A4RHR8|RM04_MAGO7 54S ribosomal protein L4, mitochondrial OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MRPL4 PE=3
SV=1
Length = 302
Score = 43.1 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 334 SPKNFGAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKT 378
+PK A GRSW +ELR KS DLH LW++ +E+N + T
Sbjct: 132 TPKQLSAH----GRSWTVQELRGKSWEDLHALWWMCCRERNRIAT 172
>sp|A6RDX3|RM04_AJECN 54S ribosomal protein L4, mitochondrial OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=MRPL4 PE=3 SV=1
Length = 248
Score = 43.1 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 341 EQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
E+ GR+W +ELR KS DLHKL+++ +KE+N + T +E
Sbjct: 118 EEYAHGRAWSIQELRQKSWDDLHKLYWLCVKERNRIATARYE 159
>sp|Q59RP7|RM04_CANAL 54S ribosomal protein L4, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=MRPL4 PE=3 SV=1
Length = 309
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
R W ELR KS DLHK+WY+ LKE+N+L
Sbjct: 76 SREWSSAELRQKSFEDLHKIWYLTLKERNIL 106
>sp|Q6CWC4|RM04_KLULA 54S ribosomal protein L4, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=MRPL4 PE=3 SV=1
Length = 332
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 345 VGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEH 381
+ R W ELR KS +DLH LWY LKE+N+L H
Sbjct: 86 LSRPWTIPELRRKSFTDLHSLWYTCLKERNVLARENH 122
>sp|Q6FK61|RM04_CANGA 54S ribosomal protein L4, mitochondrial OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MRPL4 PE=3 SV=1
Length = 315
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 345 VGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEH 381
R+W ELR KS DLH LWY LKE+N+L H
Sbjct: 87 TSRAWSIPELRRKSFEDLHSLWYTCLKERNILARENH 123
>sp|A3LYY9|RM04_PICST 54S ribosomal protein L4, mitochondrial OS=Scheffersomyces stipitis
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL
Y-11545) GN=MRPL4 PE=3 SV=2
Length = 299
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNML 376
R W ELR KS DLHKLWY+ LKE+N+L
Sbjct: 77 SREWTFAELRRKSFEDLHKLWYLTLKERNIL 107
>sp|P36517|RM04_YEAST 54S ribosomal protein L4, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MRPL4 PE=1 SV=2
Length = 319
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 347 RSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
R W ELR KS +DLH LWY L+EQN+L H K
Sbjct: 91 RPWSIPELRHKSFNDLHSLWYNCLREQNVLARENHLLK 128
>sp|A7A1V9|RM04_YEAS7 54S ribosomal protein L4, mitochondrial OS=Saccharomyces cerevisiae
(strain YJM789) GN=MRPL4 PE=3 SV=1
Length = 319
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%)
Query: 347 RSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECK 384
R W ELR KS +DLH LWY L+EQN+L H K
Sbjct: 91 RPWSIPELRHKSFNDLHSLWYNCLREQNVLARENHLLK 128
>sp|Q756Y8|RM04_ASHGO 54S ribosomal protein L4, mitochondrial OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=MRPL4 PE=3 SV=3
Length = 341
Score = 41.2 bits (95), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 328 LNEFFDSPKNF-GAEQVR-VGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEH 381
L +FFD + AE++ R W ELR KS DLH LWY LKE+N+L H
Sbjct: 96 LWQFFDGGRFMRSAEELDDKSRPWTVPELRRKSFDDLHSLWYACLKERNILAREMH 151
>sp|A7TNQ2|RM04_VANPO 54S ribosomal protein L4, mitochondrial OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=MRPL4 PE=3
SV=1
Length = 322
Score = 40.8 bits (94), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 21/36 (58%)
Query: 346 GRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEH 381
R W ELR KS DLH LWY LKE+N+L H
Sbjct: 87 SRPWTIPELRRKSFEDLHSLWYTSLKERNILARENH 122
>sp|Q0U6J9|RM04_PHANO 54S ribosomal protein L4, mitochondrial OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=MRPL4 PE=3
SV=2
Length = 250
Score = 40.0 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 341 EQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
++ R GR+W ELR + LH+LW+V +KE+N L T + E
Sbjct: 109 DESRHGRAWTVGELRNQDWDALHQLWWVCVKERNRLATEKIE 150
>sp|Q4A703|EFG_MYCS5 Elongation factor G OS=Mycoplasma synoviae (strain 53) GN=fusA PE=3
SV=1
Length = 696
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 552 EEKEVAQIFATYKDVDVEAV--QEKYPDVDVEEMCVKRVSSKVLLNESDLLG 601
EEK I A Y +DV+A Y DVD E+ K +SK L DL+G
Sbjct: 543 EEKMAVGILAGYPMIDVKATLFDGSYHDVDSSELAYKIAASKALTKAKDLIG 594
>sp|Q662F3|MUTL_BORGA DNA mismatch repair protein MutL OS=Borrelia garinii (strain PBi)
GN=mutL PE=3 SV=1
Length = 611
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 64/206 (31%)
Query: 392 NPERIDKNFFPNFIDPNLLNVP-----------NFIKCSVSSYRYVLLKEQ-----NMLK 435
NPE ID N P + N+P NF ++SY +++K Q N+++
Sbjct: 290 NPEYIDFNVHPQKKEVRFFNLPFLFKLISDNINNFFDKDINSYNEIVIKRQLTDDDNLIE 349
Query: 436 TMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHT-GERPAELIDNA 494
+ P+ ++K N D+I+ +N LET HT + +I N
Sbjct: 350 MINQ-----------PKNLNKT-----NTYDIIQNKN-----LETEHTVNDLSKNIIQND 388
Query: 495 FGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEK 554
GL+ + N +I NR + + +K L+ E KNE++
Sbjct: 389 IGLR-------------------RYNSIIQNRPSFKENITNIFSDKFLEFEEPPNKNEKE 429
Query: 555 E-----VAQIFATYKDVDVEAVQEKY 575
E + QIF+ + + VE V E Y
Sbjct: 430 EIKFNYIGQIFSEF--LIVEKVNEIY 453
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,041,521
Number of Sequences: 539616
Number of extensions: 15181675
Number of successful extensions: 73329
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 66774
Number of HSP's gapped (non-prelim): 4683
length of query: 908
length of database: 191,569,459
effective HSP length: 127
effective length of query: 781
effective length of database: 123,038,227
effective search space: 96092855287
effective search space used: 96092855287
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)