Query psy13883
Match_columns 908
No_of_seqs 192 out of 276
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 22:52:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3331|consensus 100.0 4.6E-46 1E-50 364.0 11.7 181 311-551 25-209 (213)
2 PF06984 MRP-L47: Mitochondria 100.0 1.9E-36 4E-41 265.5 7.7 86 328-471 1-87 (87)
3 KOG3331|consensus 99.8 4.7E-20 1E-24 182.0 7.8 114 1-179 92-205 (213)
4 PF06984 MRP-L47: Mitochondria 98.6 1.6E-08 3.5E-13 90.0 2.6 39 1-39 49-87 (87)
5 PRK00306 50S ribosomal protein 97.3 0.0011 2.3E-08 56.0 7.2 61 351-474 3-63 (66)
6 COG0255 RpmC Ribosomal protein 94.9 0.098 2.1E-06 45.8 6.9 32 444-475 35-66 (69)
7 cd00427 Ribosomal_L29_HIP Ribo 94.1 0.096 2.1E-06 43.3 4.7 26 446-471 32-57 (57)
8 PF00831 Ribosomal_L29: Riboso 92.0 0.25 5.4E-06 41.1 4.3 28 444-471 31-58 (58)
9 CHL00154 rpl29 ribosomal prote 91.9 0.36 7.7E-06 41.9 5.3 31 443-473 35-65 (67)
10 PRK00461 rpmC 50S ribosomal pr 90.5 0.56 1.2E-05 42.7 5.4 32 445-476 33-64 (87)
11 PRK14549 50S ribosomal protein 77.9 5.6 0.00012 34.6 5.4 30 444-473 36-66 (69)
12 PF06933 SSP160: Special lobe- 67.9 3 6.5E-05 47.4 1.9 19 260-278 178-196 (756)
13 TIGR00012 L29 ribosomal protei 57.0 18 0.00038 30.1 4.0 27 444-470 29-55 (55)
14 PF14493 HTH_40: Helix-turn-he 48.9 18 0.00039 31.6 3.1 55 199-253 32-87 (91)
15 PF05086 Dicty_REP: Dictyostel 48.4 9.5 0.00021 46.1 1.6 24 546-569 203-226 (911)
16 PHA00727 hypothetical protein 48.1 9 0.0002 40.4 1.3 24 661-684 251-274 (278)
17 PF05086 Dicty_REP: Dictyostel 47.7 9.8 0.00021 46.0 1.6 7 575-581 220-226 (911)
18 PRK00306 50S ribosomal protein 40.7 52 0.0011 28.1 4.5 31 12-42 33-63 (66)
19 COG0255 RpmC Ribosomal protein 38.0 53 0.0012 29.2 4.2 32 12-43 35-66 (69)
20 PF06933 SSP160: Special lobe- 36.3 20 0.00044 41.1 1.8 28 361-388 335-362 (756)
21 PF02267 Rib_hydrolayse: ADP-r 31.7 44 0.00094 35.6 3.2 57 697-754 145-224 (243)
22 smart00546 CUE Domain that may 30.2 44 0.00095 25.9 2.2 16 238-253 7-22 (43)
23 PF07795 DUF1635: Protein of u 29.9 1.8E+02 0.004 30.8 7.2 29 454-482 32-60 (214)
24 PF02845 CUE: CUE domain; Int 27.0 42 0.00091 26.0 1.6 20 223-242 3-22 (42)
25 PRK01203 prefoldin subunit alp 26.6 73 0.0016 31.3 3.5 31 17-47 84-114 (130)
26 PF06378 DUF1071: Protein of u 24.7 27 0.00058 35.4 0.2 44 805-876 84-131 (164)
27 PF02845 CUE: CUE domain; Int 23.2 91 0.002 24.2 2.8 20 554-573 3-22 (42)
28 cd04759 Rib_hydrolase ADP-ribo 22.6 47 0.001 35.5 1.6 54 700-754 147-223 (242)
29 KOG4425|consensus 21.4 40 0.00087 39.6 0.8 11 327-337 269-279 (900)
No 1
>KOG3331|consensus
Probab=100.00 E-value=4.6e-46 Score=364.01 Aligned_cols=181 Identities=35% Similarity=0.429 Sum_probs=163.7
Q ss_pred cCCcccccccccCCCCcccccCCCCCCCC----ccccccCCCcchhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhc
Q psy13883 311 RKHPIQKAIHTSSKLLDLNEFFDSPKNFG----AEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEK 386 (908)
Q Consensus 311 ~~~Pt~~~iHTSsp~HGLwEFFDdkknwg----eeevk~GRAWTaeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~ 386 (908)
|++|+.+++.|++ .|+|||||||+++.+ +..+++||+|+++|||.|||+|||+||||||||||||+||+|++++
T Consensus 25 p~p~~~sa~~~~d-t~pL~qFFddk~~~~~~~~~p~~k~GR~W~aeELR~KS~nDLH~LWYvcLkErNmL~T~~~~~k~- 102 (213)
T KOG3331|consen 25 PIPPTTSALRVPD-THPLWQFFDDKKFDRSADEEPPVKHGRAWSAEELRLKSFNDLHKLWYVCLKERNMLATMRHELKN- 102 (213)
T ss_pred CCccccccCCCCC-CCcHHHHhhhhhccCChhhcCCcccCCccchHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5667776777765 799999999776654 4468999999999999999999999999999999999999999998
Q ss_pred cCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHHhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHH
Q psy13883 387 FIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLED 466 (908)
Q Consensus 387 gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKErNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKh 466 (908)
+.+.||+|||+.+|++|||||+|
T Consensus 103 ---------------------------------------------------------~~~~~PnpERi~kV~~TM~~I~~ 125 (213)
T KOG3331|consen 103 ---------------------------------------------------------IVGSFPNPERIDKVRTTMWRIEH 125 (213)
T ss_pred ---------------------------------------------------------HHhcCCCHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCcchhccccceeEEeecccCCCCCCCChhhhhcCCcccccchhHHHHHHHHHHHhHHHHH
Q psy13883 467 VIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEY 546 (908)
Q Consensus 467 VLsERe~Ay~~let~~~g~rP~~~~~n~fG~~~~y~~~E~~vP~~lNk~w~k~~~~~~~~~~aV~kFlrL~kEK~lk~~~ 546 (908)
||+||+.||..++|+++++++...+.|+||+.+.|.++||+.|+.+|.+|.+..-++ ++...+.+++-..++++.+.++
T Consensus 126 Vl~ER~~Ay~~~~~~e~~~~~~k~~~~~~g~~y~~~a~eh~~pp~~~lk~~~~~~~g-~~~~~~~~~~~knr~~l~~~kr 204 (213)
T KOG3331|consen 126 VLNERNLAYSASRTGEQDERERKKFLDTLGNDYFLNADEHDDPPASMLKRFQLAIFG-ISETIQDNTVDKNRIDLIKFKR 204 (213)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHhccccCCChhhhhhHHhhcccC-cchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999765544 7889999999999999999888
Q ss_pred HHHhh
Q psy13883 547 AKMKN 551 (908)
Q Consensus 547 ~k~~~ 551 (908)
+.++.
T Consensus 205 ~ak~~ 209 (213)
T KOG3331|consen 205 NAKLQ 209 (213)
T ss_pred HHHhh
Confidence 76653
No 2
>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome
Probab=100.00 E-value=1.9e-36 Score=265.49 Aligned_cols=86 Identities=53% Similarity=0.843 Sum_probs=80.1
Q ss_pred ccccCCCCCCC-CccccccCCCcchhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCC
Q psy13883 328 LNEFFDSPKNF-GAEQVRVGRSWRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFID 406 (908)
Q Consensus 328 LwEFFDdkknw-geeevk~GRAWTaeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~d 406 (908)
|||||+++++| +++++.+||||+++|||+|||+|||+||||||||||||+|++++|++
T Consensus 1 L~eFF~~~~~~~~~~~~~~GR~Wt~~ELR~KS~eDLHkLWyv~lKERN~L~T~~~e~~r--------------------- 59 (87)
T PF06984_consen 1 LWEFFDDKKNWPPEEEVKHGRAWTAEELRRKSFEDLHKLWYVCLKERNMLLTEEYEARR--------------------- 59 (87)
T ss_pred ChhhcCCCcCCCcccccCCCCcccHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 89999999998 66678999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccchhhHHHHHHhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883 407 PNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRER 471 (908)
Q Consensus 407 p~~~~~p~~~~c~~~~lwYVLLKErNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsER 471 (908)
+...||+|+|++||++||+||||||+||
T Consensus 60 -------------------------------------~~~~~~~~~r~~kV~~sM~~Ik~Vl~ER 87 (87)
T PF06984_consen 60 -------------------------------------QGEGMPSPERLEKVRKSMARIKHVLTER 87 (87)
T ss_pred -------------------------------------hcccccchHHHHHHHHHHHHHHHHHhcC
Confidence 2333888999999999999999999998
No 3
>KOG3331|consensus
Probab=99.80 E-value=4.7e-20 Score=181.99 Aligned_cols=114 Identities=30% Similarity=0.332 Sum_probs=105.3
Q ss_pred CccccHHHHHhhhccCCChhhhhHHHHHHHhHHHHHHHHhHHhHhhhccCCCCCCcceecchhhhhhcccccccccchhh
Q psy13883 1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFTPVLNM 80 (908)
Q Consensus 1 MLLTMEqEakrq~~~mPsPERLdKVeeSM~nLEtVVrERNdA~~lLETGe~~erPg~w~~n~fG~v~~~~~~~~~~~~~~ 80 (908)
||+||+||++++...|||||||+||.+||.+||.||+|||+||..++||++++++.+-..|.|
T Consensus 92 mL~T~~~~~k~~~~~~PnpERi~kV~~TM~~I~~Vl~ER~~Ay~~~~~~e~~~~~~k~~~~~~----------------- 154 (213)
T KOG3331|consen 92 MLATMRHELKNIVGSFPNPERIDKVRTTMWRIEHVLNERNLAYSASRTGEQDERERKKFLDTL----------------- 154 (213)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHh-----------------
Confidence 899999999999999999999999999999999999999999999999999999999988865
Q ss_pred HHHHHHHhhhcccccCCCCccccCCCccccchhhhhhhhHHHhhhccccchhhcccccCCchhhhHHHHhcCCCcCchhH
Q psy13883 81 VFACLIRKVKNTIQRSKEPKVDYKAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTL 160 (908)
Q Consensus 81 ~f~~~~~~~~~~~~r~~~pk~~~~~~~t~f~~yf~~~~~~~~~~~~~gl~~~y~~~ey~~Pk~~N~~w~~~~~~~~~~~~ 160 (908)
|+.+.|...||+.|..++.+|.+.. .++.+..
T Consensus 155 -----------------------------------------------g~~y~~~a~eh~~pp~~~lk~~~~~-~~g~~~~ 186 (213)
T KOG3331|consen 155 -----------------------------------------------GNDYFLNADEHDDPPASMLKRFQLA-IFGISET 186 (213)
T ss_pred -----------------------------------------------hHHHHHhccccCCChhhhhhHHhhc-ccCcchH
Confidence 5566799999999999999999965 4666777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13883 161 AVKKFLVLLKEKLLKKEYA 179 (908)
Q Consensus 161 av~kFl~l~~EKl~~~~~~ 179 (908)
++.+++..+++++++.+++
T Consensus 187 ~~~~~~~knr~~l~~~kr~ 205 (213)
T KOG3331|consen 187 IQDNTVDKNRIDLIKFKRN 205 (213)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999843
No 4
>PF06984 MRP-L47: Mitochondrial 39-S ribosomal protein L47 (MRP-L47); InterPro: IPR010729 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005761 mitochondrial ribosome
Probab=98.62 E-value=1.6e-08 Score=90.01 Aligned_cols=39 Identities=41% Similarity=0.615 Sum_probs=38.2
Q ss_pred CccccHHHHHhhhccCCChhhhhHHHHHHHhHHHHHHHH
Q psy13883 1 MLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRER 39 (908)
Q Consensus 1 MLLTMEqEakrq~~~mPsPERLdKVeeSM~nLEtVVrER 39 (908)
||+|+|+|++++...||+|||++||..||.||.+||.||
T Consensus 49 ~L~T~~~e~~r~~~~~~~~~r~~kV~~sM~~Ik~Vl~ER 87 (87)
T PF06984_consen 49 MLLTEEYEARRQGEGMPSPERLEKVRKSMARIKHVLTER 87 (87)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999999999999999999998
No 5
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=97.25 E-value=0.0011 Score=55.98 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=49.8
Q ss_pred hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883 351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE 430 (908)
Q Consensus 351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE 430 (908)
+.|||.+|.+||.+.+..+.+| |+..+-..
T Consensus 3 ~~elr~ls~~eL~~~l~~lkke---L~~lR~~~----------------------------------------------- 32 (66)
T PRK00306 3 AKELRELSVEELNEKLLELKKE---LFNLRFQK----------------------------------------------- 32 (66)
T ss_pred HHHHhhCCHHHHHHHHHHHHHH---HHHHHHHH-----------------------------------------------
Confidence 6799999999999999999888 44433221
Q ss_pred hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
..+...+|.++..+|++++||++|++||..|
T Consensus 33 -------------~~~~~~n~~~i~~~rk~IARi~Tvl~er~~~ 63 (66)
T PRK00306 33 -------------ATGQLENTHRLREVRRDIARIKTVLRERELG 63 (66)
T ss_pred -------------HhCCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2234678999999999999999999999876
No 6
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=94.90 E-value=0.098 Score=45.83 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.1
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13883 444 KFIVFPNPERIDKVQESMENLEDVIRERNVAY 475 (908)
Q Consensus 444 q~~~mPnPERleKVRkSM~RIKhVLsERe~Ay 475 (908)
..+..++|.|++.||++.+||++|++|+..+.
T Consensus 35 a~g~l~n~~~ir~vRr~IARi~Tv~~E~~~~~ 66 (69)
T COG0255 35 ATGQLENPHRIREVRRDIARILTVLREKELEA 66 (69)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566799999999999999999999998764
No 7
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=94.05 E-value=0.096 Score=43.29 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.3
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883 446 IVFPNPERIDKVQESMENLEDVIRER 471 (908)
Q Consensus 446 ~~mPnPERleKVRkSM~RIKhVLsER 471 (908)
+...+|.++..+|++++||+.|++||
T Consensus 32 ~~~~~~~~~~~~Rr~IARi~Til~er 57 (57)
T cd00427 32 GQLENPHRIRKVRKDIARIKTVLNEK 57 (57)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHHcC
Confidence 34678999999999999999999986
No 8
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=91.97 E-value=0.25 Score=41.11 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.2
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHHH
Q psy13883 444 KFIVFPNPERIDKVQESMENLEDVIRER 471 (908)
Q Consensus 444 q~~~mPnPERleKVRkSM~RIKhVLsER 471 (908)
..+...+|.++..+|++.+||+.|++||
T Consensus 31 ~~~~l~n~~~ir~~Rr~IARi~Tvl~er 58 (58)
T PF00831_consen 31 ATGQLENPHRIREIRRDIARILTVLRER 58 (58)
T ss_dssp HHSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhcC
Confidence 3466689999999999999999999997
No 9
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=91.87 E-value=0.36 Score=41.88 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=27.8
Q ss_pred hhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883 443 EKFIVFPNPERIDKVQESMENLEDVIRERNV 473 (908)
Q Consensus 443 aq~~~mPnPERleKVRkSM~RIKhVLsERe~ 473 (908)
...+...+|.+++.||+..+||+.|++||..
T Consensus 35 ~atgql~n~~~ir~~RrdIARikTil~ek~~ 65 (67)
T CHL00154 35 KATRQNFKPHLFKHKKHRLAQLLTLLSSRLK 65 (67)
T ss_pred HHhCcccChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999999999999999999999974
No 10
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=90.55 E-value=0.56 Score=42.66 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=27.8
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13883 445 FIVFPNPERIDKVQESMENLEDVIRERNVAYF 476 (908)
Q Consensus 445 ~~~mPnPERleKVRkSM~RIKhVLsERe~Ay~ 476 (908)
.+...+|.++..+|+..+||+.|++||..+..
T Consensus 33 tgql~n~~~ir~iRR~IARilTvl~Ek~~~~~ 64 (87)
T PRK00461 33 TGSLDQTHKIKEIRKDIARILTILNERELEEK 64 (87)
T ss_pred hCcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568899999999999999999999998654
No 11
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=77.86 E-value=5.6 Score=34.58 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=26.5
Q ss_pred hccc-CCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883 444 KFIV-FPNPERIDKVQESMENLEDVIRERNV 473 (908)
Q Consensus 444 q~~~-mPnPERleKVRkSM~RIKhVLsERe~ 473 (908)
..+. ..+|.++..||+..+||++|++||..
T Consensus 36 ~~~~~l~n~~~ir~~Rk~IARi~Tvl~ek~~ 66 (69)
T PRK14549 36 AMGGAPENPGRIREIRRTIARILTIQREKKR 66 (69)
T ss_pred HhCcCccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445 88999999999999999999999974
No 12
>PF06933 SSP160: Special lobe-specific silk protein SSP160; InterPro: IPR009701 This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species.
Probab=67.91 E-value=3 Score=47.40 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=10.5
Q ss_pred eecceeEeeecCccccccc
Q psy13883 260 VPVPLVAIFHGRDFCTSTY 278 (908)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~ 278 (908)
+-|.++|+|.|...-...|
T Consensus 178 lmvsilalfygqsvsappy 196 (756)
T PF06933_consen 178 LMVSILALFYGQSVSAPPY 196 (756)
T ss_pred HHHHHHHHHhcCccCCCCC
Confidence 3345556666665555555
No 13
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=56.98 E-value=18 Score=30.11 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.8
Q ss_pred hcccCCChhhHHHHHHHHHHHHHHHHH
Q psy13883 444 KFIVFPNPERIDKVQESMENLEDVIRE 470 (908)
Q Consensus 444 q~~~mPnPERleKVRkSM~RIKhVLsE 470 (908)
..+...+|.++..+|+..+||+.|++|
T Consensus 29 ~~~~~~~~~~i~~~Rk~IARi~Tvl~e 55 (55)
T TIGR00012 29 ATGQLAKPHRIRQVRRDIARLLTVLRE 55 (55)
T ss_pred HhCCcccchHHHHHHHHHHHHHHHHhC
Confidence 555667999999999999999999985
No 14
>PF14493 HTH_40: Helix-turn-helix domain
Probab=48.92 E-value=18 Score=31.63 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=44.1
Q ss_pred ccccccccCcccccccccccchhhHHHHHHHhhCCCcCHHHHHhhCC-CCCHHHHh
Q psy13883 199 NHLQRCLAEPYGIGALNNIYKNEEKEVAQIFATYKDVDVEAVQEKYP-DVDVEEVR 253 (908)
Q Consensus 199 n~~~~~~~~~~~~~a~~~~~~~~~~~V~~l~~~fp~~D~ea~~e~yP-dVDiek~~ 253 (908)
+||..|...-+-+..-.-+-....+++...+++.+...+..+++..| ++|-.++|
T Consensus 32 ~HL~~~~~~g~~~~~~~~l~~e~~~~I~~~~~~~~~~~lk~i~e~l~~~~sy~~iR 87 (91)
T PF14493_consen 32 GHLAELIESGEPLDIEELLSEEEIKQIEDAIEKLGSEKLKPIKEALPGDYSYFEIR 87 (91)
T ss_pred HHHHHHHHhCCCCCHHHhCCHHHHHHHHHHHHHcCcccHHHHHHHCCCCCCHHHHH
Confidence 68888876655444444466667788999999999999999999999 89999887
No 15
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=48.39 E-value=9.5 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHHhCCCcCHH
Q psy13883 546 YAKMKNEEKEVAQIFATYKDVDVE 569 (908)
Q Consensus 546 ~~k~~~e~~~v~~l~~~fp~~d~e 569 (908)
...+++++..+-.|..-||-+|.|
T Consensus 203 vd~Qn~eEe~lS~iYsLyPf~dLE 226 (911)
T PF05086_consen 203 VDSQNEEEEKLSLIYSLYPFVDLE 226 (911)
T ss_pred ecccCchHHHHHhHhhhccccccc
Confidence 345677777777777666655555
No 16
>PHA00727 hypothetical protein
Probab=48.14 E-value=9 Score=40.43 Aligned_cols=24 Identities=50% Similarity=0.594 Sum_probs=14.0
Q ss_pred ceeeeEEEEEEeeeeeeceeeeee
Q psy13883 661 KTTTTTTTTTTTTTTTTNYLLPIT 684 (908)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~ 684 (908)
.||+|-++|||||||+..+-+|-.
T Consensus 251 ntt~th~~t~tttttspsftipsn 274 (278)
T PHA00727 251 NTTTTHLATTTTTTTSPSFTIPSN 274 (278)
T ss_pred cceeeeeccccccccCCceeccCC
Confidence 445555555566666666766643
No 17
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=47.66 E-value=9.8 Score=45.95 Aligned_cols=7 Identities=71% Similarity=1.160 Sum_probs=3.1
Q ss_pred CCCCccc
Q psy13883 575 YPDVDVE 581 (908)
Q Consensus 575 yPdVdie 581 (908)
||-+|+|
T Consensus 220 yPf~dLE 226 (911)
T PF05086_consen 220 YPFVDLE 226 (911)
T ss_pred ccccccc
Confidence 4444444
No 18
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=40.65 E-value=52 Score=28.13 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=27.8
Q ss_pred hhccCCChhhhhHHHHHHHhHHHHHHHHhHH
Q psy13883 12 KFIVFPNPERIDKVQESMENLEDVIRERNVA 42 (908)
Q Consensus 12 q~~~mPsPERLdKVeeSM~nLEtVVrERNdA 42 (908)
......||-+|..+...+-+|-||++||+.|
T Consensus 33 ~~~~~~n~~~i~~~rk~IARi~Tvl~er~~~ 63 (66)
T PRK00306 33 ATGQLENTHRLREVRRDIARIKTVLRERELG 63 (66)
T ss_pred HhCCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999876
No 19
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=37.95 E-value=53 Score=29.23 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.0
Q ss_pred hhccCCChhhhhHHHHHHHhHHHHHHHHhHHh
Q psy13883 12 KFIVFPNPERIDKVQESMENLEDVIRERNVAY 43 (908)
Q Consensus 12 q~~~mPsPERLdKVeeSM~nLEtVVrERNdA~ 43 (908)
..-..+||-||..|..+.-+|-||.+|++.+-
T Consensus 35 a~g~l~n~~~ir~vRr~IARi~Tv~~E~~~~~ 66 (69)
T COG0255 35 ATGQLENPHRIREVRRDIARILTVLREKELEA 66 (69)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567899999999999999999999998753
No 20
>PF06933 SSP160: Special lobe-specific silk protein SSP160; InterPro: IPR009701 This family consists of several special lobe-specific silk protein SSP160 sequences which appear to be specific to Chironomus (Midge) species.
Probab=36.26 E-value=20 Score=41.07 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=13.7
Q ss_pred hhhHHHHHhhhchhhhhhHHHHHHhccC
Q psy13883 361 DLHKLWYVLLKEQNMLKTMEHECKEKFI 388 (908)
Q Consensus 361 DLHKLWYVLLKERNMLLTer~EaKR~gI 388 (908)
.|+.|--.|++|------.-..++..|+
T Consensus 335 alqnlqall~qe~tcap~laanakksgv 362 (756)
T PF06933_consen 335 ALQNLQALLMQESTCAPCLAANAKKSGV 362 (756)
T ss_pred HHHHHHHHHhhhccchhhhhhccccccC
Confidence 3555555566665443333344455444
No 21
>PF02267 Rib_hydrolayse: ADP-ribosyl cyclase; InterPro: IPR003193 CD38, the HUGO gene name, is also called T10 or ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase (3.2.2.5 from EC). CD38 is a novel enzyme capable of catalysing multiple reactions, including NAD glycohydrolase, ADP-ribosyl cyclase, cyclic ADP ribose hydrolase and base-exchange activities. Two of the enzymatic products, cyclic ADP-ribose (cADPR) and nicotinic acid adenine dinucleotide phosphate (NAADP), are calcium messengers in a wide variety of cells from protist, plant, and mammal to human. CD38 is a positive and negative regulator of cell activation and proliferation, depending on the cellular environment. It is involved in adhesion between human lymphocytes and endothelial cells and is involved in the metabolism of two calcium messengers, cADPR and NAADP. CD157 (also called BP-3/IF-7, BST-1 or Mo5) has ADP-ribosyl cyclase and cyclic ADP-ribose hydrolase activities. CD157 supports the growth of a pre-B cell line, DW34. Anti-CD157 mAb IF-7 has synergistic effects on anti-CD3-induced growth of T progenitor cells, and facilitates the development of [alpha][beta] TCR+ cells in foetal thymic organ culture system. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/).; GO: 0003953 NAD+ nucleosidase activity; PDB: 2EG9_B 1YH3_A 3DZF_C 2HCT_A 2O3R_A 3DZI_A 1ZVM_D 3I9M_B 2I66_B 2O3T_B ....
Probab=31.72 E-value=44 Score=35.62 Aligned_cols=57 Identities=25% Similarity=0.437 Sum_probs=39.2
Q ss_pred hhheeeeeeeeceeecccccchhhhhhhhhhchHHH-----------------------HHHHHhHHHHHHhhccceeee
Q psy13883 697 MAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQV-----------------------QESMENLEDVIRERNVAYFQL 753 (908)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qv-----------------------~esm~nled~~rern~ay~~l 753 (908)
.|---.+|+++|.+-. |-|.+--||-++=+-|+|- ..||+.|+++|++||-.|-=.
T Consensus 145 ~A~G~V~VmLNGS~~~-~af~~~S~Fg~vElpnL~~~kV~~l~i~vvh~~~~~~~esC~~gSi~~L~~~l~~~~i~~~C~ 223 (243)
T PF02267_consen 145 AACGVVHVMLNGSRPG-GAFDNNSFFGSVELPNLNPDKVTRLEIWVVHDIEGPSRESCGSGSIKELESILKSRNIQFTCI 223 (243)
T ss_dssp H-BEEEEEEEETTSST-SSS-TTSHHHHCTGGGS-TTTEEEEEEEEEESSSSSSSSGTTSHHHHHHHHHHHHTT-EEEEE
T ss_pred hCcceEEEEeeCCCCC-CCCCCcCcceeeecccCCccceeEEEEEEEecCCCCccCCCccHHHHHHHHHHHHcCCceEee
Confidence 3445678999998864 6666666666655555542 479999999999999998654
Q ss_pred e
Q psy13883 754 E 754 (908)
Q Consensus 754 e 754 (908)
+
T Consensus 224 d 224 (243)
T PF02267_consen 224 D 224 (243)
T ss_dssp E
T ss_pred c
Confidence 4
No 22
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=30.16 E-value=44 Score=25.86 Aligned_cols=16 Identities=19% Similarity=0.661 Sum_probs=7.6
Q ss_pred HHHHhhCCCCCHHHHh
Q psy13883 238 EAVQEKYPDVDVEEVR 253 (908)
Q Consensus 238 ea~~e~yPdVDiek~~ 253 (908)
+.|++-||++|.+.|+
T Consensus 7 ~~L~~mFP~l~~~~I~ 22 (43)
T smart00546 7 HDLKDMFPNLDEEVIK 22 (43)
T ss_pred HHHHHHCCCCCHHHHH
Confidence 4444445555544443
No 23
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=29.91 E-value=1.8e+02 Score=30.78 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy13883 454 IDKVQESMENLEDVIRERNVAYFQLETTH 482 (908)
Q Consensus 454 leKVRkSM~RIKhVLsERe~Ay~~let~~ 482 (908)
.+.|..=..-++.+..||+.|-.+++..-
T Consensus 32 eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 32 EEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677888899999999887543
No 24
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=26.99 E-value=42 Score=26.00 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=12.8
Q ss_pred HHHHHHHhhCCCcCHHHHHh
Q psy13883 223 KEVAQIFATYKDVDVEAVQE 242 (908)
Q Consensus 223 ~~V~~l~~~fp~~D~ea~~e 242 (908)
..|.+|..-||++|.+.++.
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~ 22 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEA 22 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHH
Confidence 45667777777777776654
No 25
>PRK01203 prefoldin subunit alpha; Provisional
Probab=26.58 E-value=73 Score=31.26 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred CChhhhhHHHHHHHhHHHHHHHHhHHhHhhh
Q psy13883 17 PNPERIDKVQESMENLEDVIRERNVAYFQLE 47 (908)
Q Consensus 17 PsPERLdKVeeSM~nLEtVVrERNdA~~lLE 47 (908)
+..++++.++++|+.|+.++.+.+..+..|+
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~ 114 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLV 114 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446999999999999999999999998876
No 26
>PF06378 DUF1071: Protein of unknown function (DUF1071); InterPro: IPR009425 This entry is represented by Bacteriophage bIL285, Orf14. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial and phage proteins of unknown function.
Probab=24.65 E-value=27 Score=35.40 Aligned_cols=44 Identities=36% Similarity=0.640 Sum_probs=32.5
Q ss_pred hcCCcccchhhHHHHHHHHHHHHHhHHHHhhhcceeEEEEeeeeeecccc-hhhhhhhc---cccceEEEecCCCC
Q psy13883 805 KNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTN-HLQRCLAE---PYGIGVYYYDSEGY 876 (908)
Q Consensus 805 ~~~~~~~~r~~av~kfl~l~~ekl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~ 876 (908)
...||.|+|.-|+ ..+|.+|.| -.||||.. -.|+|.|-|-.|.-
T Consensus 84 ~~lPVMD~rNk~i----------------------------~~p~~~dINka~~RclVKalA~~GLGLyiYaGEDl 131 (164)
T PF06378_consen 84 MWLPVMDGRNKAI----------------------------EKPTAFDINKAIMRCLVKALAMFGLGLYIYAGEDL 131 (164)
T ss_pred EEEeecCCCCCcc----------------------------cCcchhhhHHHHHHHHHHHHHHhCccceeeccCcC
Confidence 4578999998887 335666665 47788743 37999999988876
No 27
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=23.23 E-value=91 Score=24.16 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCcCHHHHHh
Q psy13883 554 KEVAQIFATYKDVDVEAVQE 573 (908)
Q Consensus 554 ~~v~~l~~~fp~~d~ea~~e 573 (908)
..+.+|..-||+++.+.++.
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~ 22 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEA 22 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHH
Confidence 46778888888888887765
No 28
>cd04759 Rib_hydrolase ADP-ribosyl cyclase (also known as cyclic ADP-ribose hydrolase or CD38) synthesizes the second messenger cyclic-ADP ribose (cADPR), which in turn releases calcium from internal stores. Mammals possess two membrane proteins, CD38 and BST-1/CD157, which exhibit ADP-ribosyl cyclase function, as well as intracellular soluble ADP-ribose cyclases. CD38 is involved in differentiation, adhesion, and cell proliferation, as well as diseases such as AIDS, diabetes, and B-cell chronic lymphocytic leukemia. The extramembrane domain of CD38 acts as a multifunctional enzyme and can synthesize cADPR from NAD+, hydrolyze NAD+, and cADPR to ADPR, as well as catalyze the exchange of the nicotinamide group of NADP+ with nicotinic acid under acidic conditions to yield NAADP+ (nicotinic acid-adenine dinucleotide phosphate), a metabolite involved in Ca2+ mobilization from acidic stores.
Probab=22.60 E-value=47 Score=35.46 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=38.1
Q ss_pred eeeeeeeeceeecccccchhhhhhhhhhchHHH-----------------------HHHHHhHHHHHHhhccceeeee
Q psy13883 700 ICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQV-----------------------QESMENLEDVIRERNVAYFQLE 754 (908)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qv-----------------------~esm~nled~~rern~ay~~le 754 (908)
--.+|++.|.+- =|-|.+--+|-++-+-|++. ..|++.|++++..||-+|.=.+
T Consensus 147 G~V~VmLNGS~~-~~af~~~S~Fg~vElp~L~p~kV~~v~i~vvh~l~~~~~~sC~~~Si~~L~~~l~~~ni~~sC~d 223 (242)
T cd04759 147 GVVHVMLNGSAS-GGAFRNNSTFGSVEIPNLNPDKVSQVIIWVIHDLEGPNRDSCGSGSIKELESILKKRNIQFSCID 223 (242)
T ss_pred CeEEEEEcCCCC-CCCcCCCCceeeEEcccCCccceeeEEEEEEcCCCCCcccccccchHHHHHHHHHHcCCceEEec
Confidence 446788999764 34666666666665555542 3589999999999999986443
No 29
>KOG4425|consensus
Probab=21.38 E-value=40 Score=39.56 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=5.6
Q ss_pred cccccCCCCCC
Q psy13883 327 DLNEFFDSPKN 337 (908)
Q Consensus 327 GLwEFFDdkkn 337 (908)
.|++=.||+.|
T Consensus 269 eledsmddptn 279 (900)
T KOG4425|consen 269 ELEDSMDDPTN 279 (900)
T ss_pred hhhhcccCccc
Confidence 34555555544
Done!