Query psy13883
Match_columns 908
No_of_seqs 192 out of 276
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 22:52:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_V 50S ribosomal protein L 97.4 0.00017 5.8E-09 60.3 5.4 61 351-474 3-63 (67)
2 1r73_A TM1492, 50S ribosomal p 97.4 0.00039 1.3E-08 58.0 6.9 60 351-473 3-62 (66)
3 1vq8_V 50S ribosomal protein L 97.3 0.00039 1.3E-08 58.8 6.4 64 349-474 4-67 (71)
4 3v2d_2 50S ribosomal protein L 97.0 0.00063 2.1E-08 57.8 4.5 29 446-474 42-70 (72)
5 3r8s_Y 50S ribosomal protein L 97.0 0.00025 8.6E-09 58.7 2.1 28 446-473 35-62 (63)
6 3j21_W 50S ribosomal protein L 95.4 0.031 1.1E-06 47.4 6.5 34 445-478 34-68 (72)
7 3jyw_X 60S ribosomal protein L 93.3 0.024 8.1E-07 50.1 1.3 24 451-474 40-63 (86)
8 3iz5_c 60S ribosomal protein L 92.3 0.16 5.6E-06 47.3 5.5 44 446-491 40-85 (124)
9 2zkr_v 60S ribosomal protein L 92.1 0.28 9.4E-06 45.7 6.6 28 447-474 40-67 (123)
10 3bbo_Z Ribosomal protein L29; 91.9 0.17 5.9E-06 49.6 5.3 29 446-474 99-127 (173)
11 4a17_U RPL35, 60S ribosomal pr 91.5 0.22 7.5E-06 46.5 5.3 30 445-474 39-68 (124)
12 3u5e_h 60S ribosomal protein L 71.1 6.2 0.00021 36.7 5.7 23 451-473 41-63 (120)
13 2zjr_V 50S ribosomal protein L 57.0 8.3 0.00028 32.2 3.4 29 14-42 35-63 (67)
14 1vq8_V 50S ribosomal protein L 54.8 9.1 0.00031 32.4 3.3 29 14-42 39-67 (71)
15 3gc6_A ECTO-NAD+ glycohydrolas 54.3 6.2 0.00021 40.4 2.6 59 694-754 157-236 (247)
16 3r8s_Y 50S ribosomal protein L 51.6 4.3 0.00015 33.6 0.8 29 14-42 35-63 (63)
17 3p5s_A CD38 molecule; cyclic A 50.2 8 0.00028 40.2 2.8 59 694-754 188-267 (278)
18 1r73_A TM1492, 50S ribosomal p 46.5 18 0.00061 30.1 3.8 28 14-41 35-62 (66)
19 3v2d_2 50S ribosomal protein L 45.8 16 0.00056 30.9 3.5 29 14-42 42-70 (72)
20 3f6y_A ADP-ribosyl cyclase 1; 41.2 14 0.00047 38.2 2.8 57 696-754 160-239 (262)
21 2eg9_A ADP-ribosyl cyclase 1; 38.1 17 0.00057 37.5 2.8 54 698-753 169-245 (253)
22 3j21_W 50S ribosomal protein L 29.1 49 0.0017 28.0 3.8 31 14-44 35-66 (72)
23 1p3q_Q VPS9P, vacuolar protein 28.7 64 0.0022 26.6 4.3 21 552-572 12-32 (54)
24 1isi_A Bone marrow stromal cel 28.0 30 0.001 35.9 2.7 64 698-766 151-237 (265)
25 1wgl_A TOLL-interacting protei 26.7 27 0.00094 28.6 1.8 23 221-243 9-31 (59)
26 1r12_A ADP-ribosyl cyclase; X- 26.0 42 0.0014 34.7 3.4 64 698-766 151-237 (258)
27 3qho_A Endoglucanase, 458AA lo 22.8 18 0.00061 38.5 0.0 11 497-507 290-300 (458)
28 1wgl_A TOLL-interacting protei 22.0 60 0.002 26.6 2.9 23 552-574 9-31 (59)
29 1otr_A Protein CUE2; protein-p 21.5 40 0.0014 27.1 1.8 21 222-242 5-25 (49)
No 1
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=97.42 E-value=0.00017 Score=60.33 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=48.9
Q ss_pred hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883 351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE 430 (908)
Q Consensus 351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE 430 (908)
+.|||.+|.+||++.+.-+.+| |...+-.
T Consensus 3 ~~elr~~s~~EL~~~l~elk~E---Lf~LR~q------------------------------------------------ 31 (67)
T 2zjr_V 3 PSEMRNLQATDFAKEIDARKKE---LMELRFQ------------------------------------------------ 31 (67)
T ss_dssp STTTTTSCHHHHHHHHHTHHHH---HHHHHHH------------------------------------------------
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---HHHHHHH------------------------------------------------
Confidence 5799999999999999888887 3332211
Q ss_pred hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
...+...+|.|++.||++++||++|++||..+
T Consensus 32 ------------~atgql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 32 ------------AAAGQLAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp ------------HHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------HHhCCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12356689999999999999999999999765
No 2
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=97.36 E-value=0.00039 Score=58.03 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=48.2
Q ss_pred hhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHHHH
Q psy13883 351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKE 430 (908)
Q Consensus 351 aeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLLKE 430 (908)
+.|||.+|.+||++.+.-+.+| |...+-.
T Consensus 3 ~~elr~~s~~EL~~~l~elk~E---Lf~LR~q------------------------------------------------ 31 (66)
T 1r73_A 3 ASELRNYTDEELKNLLEEKKRQ---LMELRFQ------------------------------------------------ 31 (66)
T ss_dssp CSHHHHSCHHHHHHHHHHHHHH---HHHHHHH------------------------------------------------
T ss_pred hHHHHhCCHHHHHHHHHHHHHH---HHHHHHH------------------------------------------------
Confidence 5799999999999999888887 3322211
Q ss_pred hhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883 431 QNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNV 473 (908)
Q Consensus 431 rNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~ 473 (908)
...+...+|.|+..||++++||++|++||+.
T Consensus 32 ------------~atgql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (66)
T 1r73_A 32 ------------LAMGQLKNTSLIKLTKRDIARIKTILREREL 62 (66)
T ss_dssp ------------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHccCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235668999999999999999999999985
No 3
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=97.30 E-value=0.00039 Score=58.83 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=49.7
Q ss_pred cchhHhhccCchhhhHHHHHhhhchhhhhhHHHHHHhccCCCCCccccccCCCCCcCCCCCCCCCcccccccchhhHHHH
Q psy13883 349 WRKEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLL 428 (908)
Q Consensus 349 WTaeELR~KSfEDLHKLWYVLLKERNMLLTer~EaKR~gI~MPnPeRL~K~~~~~~~dp~~~~~p~~~~c~~~~lwYVLL 428 (908)
+.+.|||.+|.+||++.+.-+.+| |...+-.
T Consensus 4 mk~~elr~~s~~EL~~~l~elk~E---Lf~LR~q---------------------------------------------- 34 (71)
T 1vq8_V 4 LHVQEIRDMTPAEREAELDDLKTE---LLNARAV---------------------------------------------- 34 (71)
T ss_dssp SCHHHHHHSCHHHHHHHHHHHHHH---HHHHHHH----------------------------------------------
T ss_pred CCHHHHHhCCHHHHHHHHHHHHHH---HHHHHHH----------------------------------------------
Confidence 678899999999999998888777 2221111
Q ss_pred HHhhhhhhhhhhhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 429 KEQNMLKTMEHECKEKFIVFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 429 KErNML~Tqrh~l~aq~~~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
.+-++..++|.|++.||++++||++|++||..+
T Consensus 35 -------------~atggql~n~~~ir~vRr~IARi~Tvl~er~~~ 67 (71)
T 1vq8_V 35 -------------QAAGGAPENPGRIKELRKAIARIKTIQGEEGDL 67 (71)
T ss_dssp -------------HHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred -------------HHhcCCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112356789999999999999999999999865
No 4
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=96.98 E-value=0.00063 Score=57.77 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=25.9
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 446 IVFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 446 ~~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
+...+|.|++.||++.+||++|++||+.+
T Consensus 42 gql~n~~~ir~vRr~IARi~Tvl~er~~~ 70 (72)
T 3v2d_2 42 GQLSQNHKIRDLKRQIARLLTVLNEKRRQ 70 (72)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44588999999999999999999999864
No 5
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=96.98 E-value=0.00025 Score=58.68 Aligned_cols=28 Identities=7% Similarity=0.219 Sum_probs=25.1
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHH
Q psy13883 446 IVFPNPERIDKVQESMENLEDVIRERNV 473 (908)
Q Consensus 446 ~~mPnPERleKVRkSM~RIKhVLsERe~ 473 (908)
+...+|.|++.||++++||++|++||..
T Consensus 35 gql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (63)
T 3r8s_Y 35 GQLQQSHLLKQVRRDVARVKTLLNEKAG 62 (63)
T ss_dssp TCCSCGGGTHHHHHHHHHHHHTTTSSTT
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHhhc
Confidence 4568899999999999999999999864
No 6
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.39 E-value=0.031 Score=47.45 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred ccc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13883 445 FIV-FPNPERIDKVQESMENLEDVIRERNVAYFQL 478 (908)
Q Consensus 445 ~~~-mPnPERleKVRkSM~RIKhVLsERe~Ay~~l 478 (908)
.+. ..+|.|+..||++.+||++|++||+.+....
T Consensus 34 tgq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~~~ 68 (72)
T 3j21_W 34 MGTSLENPMVIRNLRRDIARLLTIKKEKLREREKG 68 (72)
T ss_dssp HCCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445 7899999999999999999999999887654
No 7
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=93.34 E-value=0.024 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 451 PERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 451 PERleKVRkSM~RIKhVLsERe~A 474 (908)
|.|++.||+++.||++||+||+.+
T Consensus 40 p~rIr~vRRdIARikTvl~er~~~ 63 (86)
T 3jyw_X 40 LPKIKTVRKSIACVLTVINEQQAA 63 (86)
T ss_dssp HHHHTCCSTTTHHHHTTTTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999863
No 8
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=92.34 E-value=0.16 Score=47.28 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=32.2
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccCCCCcchh
Q psy13883 446 IVFPNPERIDKVQESMENLEDVIRERNVAYFQLETT--HTGERPAELI 491 (908)
Q Consensus 446 ~~mPnPERleKVRkSM~RIKhVLsERe~Ay~~let~--~~g~rP~~~~ 491 (908)
+...+|.++..||++.+||+.||+||+.+ .|... ....-|-++.
T Consensus 40 gqlen~~rIr~vRRdIARi~Tvl~er~~~--~lr~~yk~kk~~P~dlr 85 (124)
T 3iz5_c 40 SSGSKLNRIHDIRKSIARVLTVINAKQRA--QLRLFYKNKKYAPLDLR 85 (124)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHSSSCCCSSHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCCCCCCcccC
Confidence 35678999999999999999999999864 33322 2235665553
No 9
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=92.08 E-value=0.28 Score=45.69 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.8
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 447 VFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 447 ~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
...+|.|+..||++.+||+.|++||+.+
T Consensus 40 ~len~~rir~vRrdIARI~Tvl~er~~~ 67 (123)
T 2zkr_v 40 AASKLSKIRVVRKSIARVLTVINQTQKE 67 (123)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999864
No 10
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=91.95 E-value=0.17 Score=49.57 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=25.7
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 446 IVFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 446 ~~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
+...+|.|++.||+...||+.||+||+.+
T Consensus 99 GQLeNpsrIR~VRRdIARIkTVLrErel~ 127 (173)
T 3bbo_Z 99 RNEFKSSDFRRMKKQVARMLTVKREREIK 127 (173)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999774
No 11
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=91.55 E-value=0.22 Score=46.46 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=26.4
Q ss_pred cccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q psy13883 445 FIVFPNPERIDKVQESMENLEDVIRERNVA 474 (908)
Q Consensus 445 ~~~mPnPERleKVRkSM~RIKhVLsERe~A 474 (908)
++...+|.++..||++.+||+.|++||+.+
T Consensus 39 ggqlen~~rIr~vRRdIARi~Tvl~er~~~ 68 (124)
T 4a17_U 39 GGTANKLGRIGIVRKAIAKYLTIINEKRRQ 68 (124)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336788999999999999999999999863
No 12
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=71.14 E-value=6.2 Score=36.66 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy13883 451 PERIDKVQESMENLEDVIRERNV 473 (908)
Q Consensus 451 PERleKVRkSM~RIKhVLsERe~ 473 (908)
|.++..||++..||+.|++||+.
T Consensus 41 ~~~Ir~vRR~IARi~Tvl~er~~ 63 (120)
T 3u5e_h 41 LPKIKTVRKSIACVLTVINEQQR 63 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976
No 13
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=57.04 E-value=8.3 Score=32.20 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=26.9
Q ss_pred ccCCChhhhhHHHHHHHhHHHHHHHHhHH
Q psy13883 14 IVFPNPERIDKVQESMENLEDVIRERNVA 42 (908)
Q Consensus 14 ~~mPsPERLdKVeeSM~nLEtVVrERNdA 42 (908)
-+..||-||..|..++-+|-||++||+.+
T Consensus 35 gql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (67)
T 2zjr_V 35 GQLAQPHRVRQLRREVAQLNTVKAELARK 63 (67)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999865
No 14
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=54.76 E-value=9.1 Score=32.35 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=26.1
Q ss_pred ccCCChhhhhHHHHHHHhHHHHHHHHhHH
Q psy13883 14 IVFPNPERIDKVQESMENLEDVIRERNVA 42 (908)
Q Consensus 14 ~~mPsPERLdKVeeSM~nLEtVVrERNdA 42 (908)
.+..||-||..|..++-+|-||++||+.+
T Consensus 39 gql~n~~~ir~vRr~IARi~Tvl~er~~~ 67 (71)
T 1vq8_V 39 GAPENPGRIKELRKAIARIKTIQGEEGDL 67 (71)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999865
No 15
>3gc6_A ECTO-NAD+ glycohydrolase (CD38 molecule); cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG; 1.51A {Bos taurus} SCOP: c.23.14.3 PDB: 3ghh_A* 3kou_A* 3gh3_A*
Probab=54.27 E-value=6.2 Score=40.39 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=43.5
Q ss_pred cchhhheeeeeeeeceeecccccchhhhhhhhhhchHH---------------------HHHHHHhHHHHHHhhccceee
Q psy13883 694 YLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQ---------------------VQESMENLEDVIRERNVAYFQ 752 (908)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q---------------------v~esm~nled~~rern~ay~~ 752 (908)
|-..|---.+|++.|.+ . |-|.+--||-++=+.|+| -..|++.|+++|++||-.|-=
T Consensus 157 fA~~A~G~V~VmLNGS~-~-~af~~~S~Fg~vElpnL~~~k~l~i~Vvh~i~~~~~esC~~~Si~~L~~~l~~~n~~~sC 234 (247)
T 3gc6_A 157 FAESACNTVRVVLNGSL-E-NAFDSMSIFGRVQAPNLRPQVELEAWLVHDTGKPPSDSCSGSSIRKLKSILDGRNVKFRC 234 (247)
T ss_dssp HHHTCCSEEEEEEETTS-S-CSCCTTSHHHHTTGGGCCTTCEEEEEEEECTTSCCSCCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCcEEEEecCCC-C-CCcCCCCcceeeeccCCCCCceEEEEEEeCCCCCccCcccchhHHHHHHHHHhCCCceEe
Confidence 33445556799999998 4 778777777766665553 257999999999999998854
Q ss_pred ee
Q psy13883 753 LE 754 (908)
Q Consensus 753 le 754 (908)
.+
T Consensus 235 ~d 236 (247)
T 3gc6_A 235 MD 236 (247)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 16
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=51.56 E-value=4.3 Score=33.58 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=26.4
Q ss_pred ccCCChhhhhHHHHHHHhHHHHHHHHhHH
Q psy13883 14 IVFPNPERIDKVQESMENLEDVIRERNVA 42 (908)
Q Consensus 14 ~~mPsPERLdKVeeSM~nLEtVVrERNdA 42 (908)
-+..||-||..|..++-+|-||++||..|
T Consensus 35 gql~n~~~ir~vRr~IARi~Tvl~er~~~ 63 (63)
T 3r8s_Y 35 GQLQQSHLLKQVRRDVARVKTLLNEKAGA 63 (63)
T ss_dssp TCCSCGGGTHHHHHHHHHHHHTTTSSTTC
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999999764
No 17
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=50.21 E-value=8 Score=40.20 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=43.5
Q ss_pred cchhhheeeeeeeeceeecccccchhhhhhhhhhchHH---------------------HHHHHHhHHHHHHhhccceee
Q psy13883 694 YLNMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQ---------------------VQESMENLEDVIRERNVAYFQ 752 (908)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q---------------------v~esm~nled~~rern~ay~~ 752 (908)
|-..|---.+|++.|.+ . |-|.+--||-++=+.|+| -..|++.|++++++||-.|-=
T Consensus 188 fA~~A~G~V~VmLNGS~-~-~af~~~S~FgsvElpnL~~~k~l~iwVvhdi~~~~~esC~~gSi~~L~~~L~~~ni~~sC 265 (278)
T 3p5s_A 188 FAESACNTVRVVLNGSL-E-NAFDSMSIFGRVEAPNLRPQVELEAWLVHDTGKPPSDSCSGSSIRKLKSILDGRNVKFRC 265 (278)
T ss_dssp HHHHCCSEEEEEEETTS-S-CSSCTTSHHHHTTGGGCCTTCEEEEEEEECTTSCCSCCTTSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCeEEEEEcCCC-C-CCcCCCCcceeeeccCCCCCceEEEEEEeCCCCCccCcCcchhHHHHHHHHHhCCCceEe
Confidence 33445556799999998 4 778777777766665553 257999999999999998854
Q ss_pred ee
Q psy13883 753 LE 754 (908)
Q Consensus 753 le 754 (908)
.+
T Consensus 266 ~d 267 (278)
T 3p5s_A 266 MD 267 (278)
T ss_dssp EE
T ss_pred cC
Confidence 43
No 18
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=46.55 E-value=18 Score=30.13 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=26.0
Q ss_pred ccCCChhhhhHHHHHHHhHHHHHHHHhH
Q psy13883 14 IVFPNPERIDKVQESMENLEDVIRERNV 41 (908)
Q Consensus 14 ~~mPsPERLdKVeeSM~nLEtVVrERNd 41 (908)
-+..||-||..|..++-+|-||++||+.
T Consensus 35 gql~n~~~ir~vRr~IARi~Tvl~er~~ 62 (66)
T 1r73_A 35 GQLKNTSLIKLTKRDIARIKTILREREL 62 (66)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999985
No 19
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=45.82 E-value=16 Score=30.94 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.2
Q ss_pred ccCCChhhhhHHHHHHHhHHHHHHHHhHH
Q psy13883 14 IVFPNPERIDKVQESMENLEDVIRERNVA 42 (908)
Q Consensus 14 ~~mPsPERLdKVeeSM~nLEtVVrERNdA 42 (908)
-+..||-||..|..++-++-||++||+.+
T Consensus 42 gql~n~~~ir~vRr~IARi~Tvl~er~~~ 70 (72)
T 3v2d_2 42 GQLSQNHKIRDLKRQIARLLTVLNEKRRQ 70 (72)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999865
No 20
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site closure, inhibitory conformation, alternative splicing, diabetes mellitus; 1.45A {Homo sapiens} SCOP: c.23.14.3 PDB: 2o3s_A* 3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A* 3dzk_A* 3i9m_A* 3i9n_A* 3u4h_A* 3u4i_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A* 2pgl_A* 2o3r_A* 2hct_A* ...
Probab=41.21 E-value=14 Score=38.18 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=41.5
Q ss_pred hhhheeeeeeeeceeecccccchhhhhhhhhhchHH-----------------------HHHHHHhHHHHHHhhccceee
Q psy13883 696 NMAIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQ-----------------------VQESMENLEDVIRERNVAYFQ 752 (908)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-----------------------v~esm~nled~~rern~ay~~ 752 (908)
..|---.+|++.|.+-. -|.+--||-++=+.|+| -..|++.|+++|++||-.|-=
T Consensus 160 ~~A~G~V~VmLNGS~~~--af~~~S~Fg~vElpnL~~~kV~~l~iwVvh~i~~~~~esC~~~Si~~L~~~L~~~ni~~sC 237 (262)
T 3f6y_A 160 EAACDVVHVMLDGSRSK--IFDKDSTFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDLCQDPTIKELESIISKRNIQFSC 237 (262)
T ss_dssp HHCCEEEEEEEETTSSS--SSCTTSHHHHTTGGGCCTTTEEEEEEEEECCSSSSCSCGGGSHHHHHHHHHHHHTTCEEEE
T ss_pred HHcCCcEEEEecCCCCC--CcCCCCcceeeecccCCccceeEEEEEEEeCCCCCccCcCccchHHHHHHHHHhCCCceEe
Confidence 34455678999999864 66666666665555553 257999999999999999865
Q ss_pred ee
Q psy13883 753 LE 754 (908)
Q Consensus 753 le 754 (908)
.+
T Consensus 238 ~d 239 (262)
T 3f6y_A 238 KN 239 (262)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 21
>2eg9_A ADP-ribosyl cyclase 1; hydrolase, cell sueface antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Mus musculus}
Probab=38.11 E-value=17 Score=37.51 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=42.1
Q ss_pred hheeeeeeeeceeecccccchhhhhhhhhhchHHH-----------------------HHHHHhHHHHHHhhccceeee
Q psy13883 698 AIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQV-----------------------QESMENLEDVIRERNVAYFQL 753 (908)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qv-----------------------~esm~nled~~rern~ay~~l 753 (908)
|---.+|++.|.+-. -|.+--||-++-+.|+|- ..|++.|+++|..||-+|.=.
T Consensus 169 A~G~V~VmLNGS~~~--af~~~S~Fg~vElpnL~p~kV~~v~i~V~h~~~~~~~esC~~gSi~~L~~~L~~~n~~~sC~ 245 (253)
T 2eg9_A 169 ACGVVQVMLDGSLRE--PFYKDSTFGSVEVFSLDPNKVHKLQAWVMHDIEGASSNACSSSSLNELKMIVQKRNMIFACV 245 (253)
T ss_dssp CCEEEEEEEESSSSS--SCCTTSHHHHTHHHHCCTTTEEEEEEEEECCSSSCCCCGGGSHHHHHHHHHHHTTTCEEEEE
T ss_pred cCCeEEEEecCCCCC--CcCCCCeeEEEEcccCCccceeEEEEEEEeCCCCCccCccccchHHHHHHHHHHCCCceEee
Confidence 334568999999876 787777777777777652 469999999999999988644
No 22
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.08 E-value=49 Score=28.02 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=27.5
Q ss_pred cc-CCChhhhhHHHHHHHhHHHHHHHHhHHhH
Q psy13883 14 IV-FPNPERIDKVQESMENLEDVIRERNVAYF 44 (908)
Q Consensus 14 ~~-mPsPERLdKVeeSM~nLEtVVrERNdA~~ 44 (908)
-+ ..||-||..|..+.-+|-||++||+.+..
T Consensus 35 gq~l~n~~~ir~vRr~IARi~Tvl~er~~~~~ 66 (72)
T 3j21_W 35 GTSLENPMVIRNLRRDIARLLTIKKEKLRERE 66 (72)
T ss_dssp CCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 78999999999999999999999987654
No 23
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=28.69 E-value=64 Score=26.61 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhCCCcCHHHHH
Q psy13883 552 EEKEVAQIFATYKDVDVEAVQ 572 (908)
Q Consensus 552 e~~~v~~l~~~fp~~d~ea~~ 572 (908)
-+..+..|..-||++|.|.++
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~ 32 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIE 32 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHH
Confidence 345677888999999998765
No 24
>1isi_A Bone marrow stromal cell antigen 1; ADP ribosyl cyclase, NAD glycohydrolase, CNS, ethenonad, HYD; HET: NAG ENQ; 2.10A {Homo sapiens} SCOP: c.23.14.3 PDB: 1isg_A* 1isf_A* 1ish_A* 1isj_A* 1ism_A*
Probab=28.05 E-value=30 Score=35.87 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=47.1
Q ss_pred hheeeeeeeeceeecccccchhhhhhhhhhchHHH-----------------------HHHHHhHHHHHHhhccceeeee
Q psy13883 698 AIICTYVLVEGRRLEWGMFKKVEFFFRILVSNEQV-----------------------QESMENLEDVIRERNVAYFQLE 754 (908)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qv-----------------------~esm~nled~~rern~ay~~le 754 (908)
|---.+|++.|.+- =|-|.+--||-++-+.|+|- ..|++.|+++|.+||-+|.=.+
T Consensus 151 A~G~V~VmLNGS~~-~~af~~~S~Fg~vElpnL~p~kV~~v~iwV~h~i~~~~~esC~~gSi~~L~~~L~~~n~~~sC~d 229 (265)
T 1isi_A 151 SSGVIHVMLNGSEP-TGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSCIN 229 (265)
T ss_dssp CCEEEEEEEETTCT-TCSCCSSSHHHHHTGGGCCGGGEEEEEEEEECCSSCCCSCCTTSTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEEcCCCC-CCCcCCCCceeeeecccCCccceeEEEEEEEeCCCCCccCccccchHHHHHHHHHHCCCceEeec
Confidence 44457899999864 56788878888877777762 3589999999999999986554
Q ss_pred cccCCCCchhhh
Q psy13883 755 TTHTGERPAELI 766 (908)
Q Consensus 755 t~~tgerp~~l~ 766 (908)
.-||..++
T Consensus 230 ----n~r~v~~l 237 (265)
T 1isi_A 230 ----DYRPVKLL 237 (265)
T ss_dssp ----TCHHHHHH
T ss_pred ----CCcceeeE
Confidence 23555553
No 25
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.73 E-value=27 Score=28.58 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=16.8
Q ss_pred hhHHHHHHHhhCCCcCHHHHHhh
Q psy13883 221 EEKEVAQIFATYKDVDVEAVQEK 243 (908)
Q Consensus 221 ~~~~V~~l~~~fp~~D~ea~~e~ 243 (908)
.+..+.+|..-||++|.+.++.-
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~v 31 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSV 31 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHH
Confidence 35667888888888888776653
No 26
>1r12_A ADP-ribosyl cyclase; X-RAY crystallography, cyclic ADP- ribose, naadp, Ca2+ signalling, hydrolase; 1.70A {Aplysia californica} SCOP: c.23.14.3 PDB: 1lbe_A 1r15_A 1r16_A 3i9j_A* 3i9o_A* 3zwn_A* 3zwm_A* 3zwp_A* 3zwv_A* 3zww_A* 3zwo_A* 1r0s_A 3i9l_A* 3i9k_A*
Probab=26.01 E-value=42 Score=34.68 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=43.5
Q ss_pred hheeeeeeeeceeeccc-ccchhhhhhhhhhchHH----------------------HHHHHHhHHHHHHhhccceeeee
Q psy13883 698 AIICTYVLVEGRRLEWG-MFKKVEFFFRILVSNEQ----------------------VQESMENLEDVIRERNVAYFQLE 754 (908)
Q Consensus 698 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q----------------------v~esm~nled~~rern~ay~~le 754 (908)
|---.+|++.|.+-. | -|.+--||-++-+.|+| -..|++.|++++..||-+|.=.+
T Consensus 151 a~G~V~VmLNGS~~~-g~af~~~S~Fg~vElp~L~~kV~~v~i~V~h~~~~~~~esC~~gSi~~L~~~L~~~n~~~sC~d 229 (258)
T 1r12_A 151 AEGEVTYMVDGSNPK-VPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVE 229 (258)
T ss_dssp CCEEEEEEEESSCSS-SCSSCTTSHHHHTTGGGCCTTEEEEEEEEECCTTSCCCCCTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCcEEEEEcCCCCC-CcccCCCCeeEEEeccccccceeEEEEEEEeCCCCCccCccccchHHHHHHHHHHCCCceEEec
Confidence 334567899998632 3 56666666666566664 13589999999999999986554
Q ss_pred cccCCCCchhhh
Q psy13883 755 TTHTGERPAELI 766 (908)
Q Consensus 755 t~~tgerp~~l~ 766 (908)
.-||..++
T Consensus 230 ----n~r~v~~l 237 (258)
T 1r12_A 230 ----NPRAVLFL 237 (258)
T ss_dssp ----SCHHHHHH
T ss_pred ----Cccceeee
Confidence 34666654
No 27
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=22.85 E-value=18 Score=38.48 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=5.9
Q ss_pred eeEEeecccCC
Q psy13883 497 LKEVYTKSEYD 507 (908)
Q Consensus 497 ~~~~y~~~E~~ 507 (908)
-+.+|....|.
T Consensus 290 ~nlvYs~H~Y~ 300 (458)
T 3qho_A 290 NKLVYSPHVFG 300 (458)
T ss_dssp TTEEECCBCCC
T ss_pred CCEEEEEEECC
Confidence 35566555553
No 28
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.02 E-value=60 Score=26.60 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhCCCcCHHHHHhh
Q psy13883 552 EEKEVAQIFATYKDVDVEAVQEK 574 (908)
Q Consensus 552 e~~~v~~l~~~fp~~d~ea~~ek 574 (908)
.+..+.+|...||++|.+.++.-
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~v 31 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSV 31 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CHHHHHHHHHHCCCCCHHHHHHH
Confidence 35667788888888888776643
No 29
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=21.53 E-value=40 Score=27.07 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=13.2
Q ss_pred hHHHHHHHhhCCCcCHHHHHh
Q psy13883 222 EKEVAQIFATYKDVDVEAVQE 242 (908)
Q Consensus 222 ~~~V~~l~~~fp~~D~ea~~e 242 (908)
+.+|..|..-||++|.+.++.
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~ 25 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQV 25 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHH
Confidence 455666666666666665553
Done!