RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13883
(908 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 72.6 bits (177), Expect = 5e-13
Identities = 95/725 (13%), Positives = 201/725 (27%), Gaps = 224/725 (30%)
Query: 224 EVAQIFATYKDVDVEAVQEKY-PDVDVEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDN 282
E + YKD+ + ++ + + D ++V+ +I + +
Sbjct: 10 ETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDM--------PKSILSKEE-IDHIIMSKD 59
Query: 283 PENEATF-------SHPNINFHF--------FPFLLFRHIQMLRKHPIQKAIHTSSKLLD 327
+ + F + FL+ ++ Q ++ T +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQPSMMTRMYIEQ 115
Query: 328 LNEFFDSPKNFGAEQVRVGRSWRKE---ELRVKSSSDLHKLWYVLLKEQNML---KT-ME 380
+ ++ + F V R + +LR ++ +L VL+ +L KT +
Sbjct: 116 RDRLYNDNQVFAKYNV-----SRLQPYLKLR-QALLELRPAKNVLI--DGVLGSGKTWVA 167
Query: 381 HECKEKFIVFPNPERIDKNFFPNF-IDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTMEH 439
+ V + + K F F + N C+ S VL Q +L ++
Sbjct: 168 LD------VCLSYKVQCKMDFKIFWL--------NLKNCN--SPETVLEMLQKLLYQIDP 211
Query: 440 E-CKEKFIVFPNPERIDKVQESMEN-------------LEDVIRERNVAYFQLE-----T 480
RI +Q + L +V + F L T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 481 T------------HTGERPAELIDNAFGLKEV------YTKSEYDVPKELNKEWQKNNPV 522
T T + EV Y P++L +E NP
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR---PQDLPREVLTTNP- 327
Query: 523 IDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKY------- 575
+ +++ L + K N +K I ++ ++ ++ +
Sbjct: 328 -----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 576 PDVDVEEMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRETPNFYFLLLQYSGAI 635
P + + + + V+ ++ ++ +++ K P P+ Y L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 636 LVM--KVLQSVQIFKIGKSVFSKAKAAKTTTTTTTTTTTTTTTTNYLLPITMSRYDSCPR 693
+ ++ I K T ++ L+P + +Y
Sbjct: 443 YALHRSIVDHYNIPK-------------------------TFDSDDLIPPYLDQY----- 472
Query: 694 YLNMAIICTYV---LVEGRRLE-WGMFKKVEFFFRILVSNEQVQESMENLEDVIRERNVA 749
+++ L E +F+ V FR L E IR + A
Sbjct: 473 ------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-------------EQKIRHDSTA 513
Query: 750 YFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKEWQKNNPV 809
+ +G L Y ++ N+P
Sbjct: 514 W-----NASGSILNTLQQ--LKFYKP--YIC------------------------DNDPK 540
Query: 810 IDNRTLAVKKFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGVY 869
+ A+ FL ++E L+ +Y T+ L+ L
Sbjct: 541 YERLVNAILDFLPKIEENLICSKY-------------------TDLLRIALMAED--EAI 579
Query: 870 YYDSE 874
+ ++
Sbjct: 580 FEEAH 584
Score = 60.6 bits (146), Expect = 2e-09
Identities = 94/655 (14%), Positives = 187/655 (28%), Gaps = 211/655 (32%)
Query: 8 ECKEKFIVFPNPER-----IDKVQESMEN-----LEDVIRERNVAY-FQLETTHTGERPA 56
E + + + E +E+V+R Y F + T +R
Sbjct: 50 EIDHIIMS-KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQP 105
Query: 57 ELIDNAFVCILKDKVF----LFTPVLNMVFACLIRKVKNTIQR-SKEPKV---------- 101
++ ++ +D+++ +F N+ K++ + V
Sbjct: 106 SMMTRMYIE-QRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 102 ---------DYKA-PMTNFHYY---FKRC-----LLIFCLYLCSGLKEVYT-KSEYDVPK 142
YK +F + K C +L L + +T +S++
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 143 ELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKM--------KSWVFFKVF---- 190
+L + L+ L K Y + + F
Sbjct: 224 KLRIHSIQAE----------------LRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSC 266
Query: 191 -TTMTLRDTNHLQRCLAEPYGIGALNNIYKN-EEKEVAQIFATYKDVDVEAVQEKYPDVD 248
+T R A +L++ EV + Y D + P
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLP--- 319
Query: 249 VEEVRQRSLLFVPVPLVAIFHGRDFCTSTYNRDNPENEATFSHPNINFHFFPFLLFRHIQ 308
EV + ++I RD AT+ + ++H+
Sbjct: 320 -REVLTTNPR-----RLSII-AESI------RDGL---ATWDN------------WKHVN 351
Query: 309 MLRKHPIQKAIHTSSKLLDLNEF---FDS----PKNFGAEQVRVGRSWRK---------- 351
+ I +S +L+ E+ FD P + + + W
Sbjct: 352 ---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 352 EELRVKS---------SSDLHKLWYVLLKEQNMLKTMEHECKEKFIV--FPNPERIDKN- 399
+L S + + + Y+ LK + + H + IV + P+ D +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALH----RSIVDHYNIPKTFDSDD 463
Query: 400 FFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNM--LKTMEHECKEKFIVFPNPERIDKV 457
P ++D + Y ++ LK +EH E+ +F V
Sbjct: 464 LIPPYLD-------QYF------YSHI------GHHLKNIEHP--ERMTLFR------MV 496
Query: 458 QESMENLEDVIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQ 517
LE IR + A+ +++ LK Y Y
Sbjct: 497 FLDFRFLEQKIRHDSTAW---------NASGSILNTLQQLK-FYKP--Y---------IC 535
Query: 518 KNNPVIDNRTLAVKKFLVLLKEKLLKKEYAK-----MKNEEKEVAQIFATYKDVD 567
N+P + A+ FL ++E L+ +Y + E++ + + +K V
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE--EAHKQVQ 588
Score = 33.7 bits (76), Expect = 0.31
Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 82/244 (33%)
Query: 5 MEHECKEKFIVFPNPE----RIDKVQ-------ESMENLEDVIRERNVAYFQLETTHTGE 53
+ ++ + +V P+ I + E+ L I + Y +T + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---YNIPKTFDSDD 463
Query: 54 RPAELIDNAF---------VCILKDKVFLFTPV-LNMVFACLIRKVKNTIQRSKEPKVDY 103
+D F +++ LF V L+ F L +K+++
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASG-SI 520
Query: 104 KAPMTNFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKNNPVIDNRTLAVK 163
+ +Y Y+C N+P + A+
Sbjct: 521 LNTLQQLKFYKP--------YIC-----------------------DNDPKYERLVNAIL 549
Query: 164 KFLVLLKEKLLKKEYAKMKSWVFFKVFTTMTLRDTNHLQRCLAEPYGIGALNNIYKNEEK 223
FL ++E L+ +Y T+ L+ L I++ K
Sbjct: 550 DFLPKIEENLICSKY-------------------TDLLRIALMAEDE-----AIFEEAHK 585
Query: 224 EVAQ 227
+V +
Sbjct: 586 QVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 4e-05
Identities = 71/488 (14%), Positives = 141/488 (28%), Gaps = 172/488 (35%)
Query: 442 KEKFI-VFPNPER---IDKVQESMENLEDVIRERNVAYF------QLETTHTGERPA--E 489
+E+F + P P D + L V F +E + G+
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAEL--------VGKFLGYVSSLVEPSKVGQFDQVLN 85
Query: 490 LIDNAFGLKEVYTKSEY----DV-------PKELNKEWQKNNPVIDN----RTLAVKKFL 534
L F ++ Y D+ +E + K +I N R +A + F
Sbjct: 86 LCLTEF-------ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 535 VLLKEKLLK---KEYAKM--------KNEE--KEVAQIFATYKDVDVEAVQEKYPDVDVE 581
L + + A++ ++ +E+ ++ TY + V
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-------------VG 185
Query: 582 EMCVKRVSSKVLLNESDLLGHEIRKLRTTIGLPGRDLRE-------TPNFYFLLL-QYSG 633
++ + S++ L + K+ T G ++ E TP+ +LL S
Sbjct: 186 DLI--KFSAETLSELIRT-TLDAEKVFTQ----GLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 634 AILVMKVLQSVQIFKIGKSV-FSKAKAAKTTTTTTTTTTTTTTTTNYLLPITMSRYDSCP 692
++ V+Q K + F+ + T + T + I + DS
Sbjct: 239 PLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA----VAIAET--DSWE 290
Query: 693 RYLNMAIICTYVLVEGRRLEWGMF----KKVEFFFRILVSNEQVQESMEN---------- 738
+ + +F + E + + +++S+EN
Sbjct: 291 SFFVSVRKA---------ITV-LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS 340
Query: 739 --------LEDVIRERNVAYFQLETTH------------TGERPAEL------------- 765
++D + + N + +G P L
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-PQSLYGLNLTLRKAKAP 399
Query: 766 --IDNA---FGK--------YL--SS-FHVSSSCLKEVYTKSEYDVPKELNKEWQKNN-- 807
+D + F + +L +S FH S L D+ K N + +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFH--SHLLVPASDLINKDLVKN-NVSFNAKDIQ 456
Query: 808 -PVIDNRT 814
PV D
Sbjct: 457 IPVYDTFD 464
Score = 40.4 bits (94), Expect = 0.003
Identities = 32/191 (16%), Positives = 55/191 (28%), Gaps = 74/191 (38%)
Query: 8 ECKEKFIVFPN---PERIDKVQESMEN------------------LEDVIRERNVAYFQL 46
C E +PN P I +++S+EN ++D + + N
Sbjct: 309 RCYE---AYPNTSLPPSI--LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN------ 357
Query: 47 ETTHTGERPAE------LI--DNAFVCILKDKVFLFT-PVLNMV-FACLIRKVKNTIQRS 96
+H PA L+ V + P ++ +RK K
Sbjct: 358 --SHL---PAGKQVEISLVNGAKNLVV---------SGPPQSLYGLNLTLRKAK------ 397
Query: 97 KEPKVD-YKAPMT----NFHYYFKRCLLIFCLYLCSGLKEVYTKSEYDVPKELNKEWQKN 151
+D + P + F F L + + L D+ K N +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKN-NVSFNAK 453
Query: 152 N---PVIDNRT 159
+ PV D
Sbjct: 454 DIQIPVYDTFD 464
Score = 39.6 bits (92), Expect = 0.005
Identities = 84/561 (14%), Positives = 158/561 (28%), Gaps = 196/561 (34%)
Query: 124 YLCSGLKEVYTKSEYDVPKELNKEWQKNNP--VIDNRTLAVKKFLVLLKEKLLKKEYAKM 181
++ S L+E + K + + + P + L V KFL + + + +
Sbjct: 28 FIASQLQEQFNKILPEPTEGF---AADDEPTTPAE---L-VGKFLGYVSSLVEPSKVGQF 80
Query: 182 KSWV--FFKVFTTMTLRDTN-H-------------------LQRC-------LAEPYGIG 212
+ F L + H L + P+
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 213 ---AL--------NNIY-------KNEE--KEVAQIFATYKDVDVEAVQEKYPDVDVEEV 252
AL + ++ +E+ ++ TY + V + ++
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VGDL--------IKFS 191
Query: 253 RQR--SLLFVPVPLVAIF-HGRDFCTSTYNRDN-PENE----ATFSHPNINFHFFPFLLF 304
+ L+ + +F G + N N P+ + S P I ++
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI------GVI- 244
Query: 305 RHIQMLRKHPIQKAIH--TSSKLLDLN--EFFDSPKNFG----------AEQVRVGRSWR 350
Q+ H ++KLL E K G A + SW
Sbjct: 245 ---QLA---------HYVVTAKLLGFTPGELRSYLK--GATGHSQGLVTAVAIAETDSW- 289
Query: 351 KEELRVKSSSDLHKLWYVLLKEQNMLKTMEHECKEKFIVFPNPERIDKNFFPNFIDPNLL 410
E V + L+++ + C E +PN + P++L
Sbjct: 290 -ESFFVSVRKAITVLFFIGV-----------RCYE---AYPNTS----------LPPSIL 324
Query: 411 --NVPNFIKCSVSSYRYVLLKEQNML--KTMEHECKEKFIVFPN---PERIDKVQESMEN 463
++ N V S ML + E + ++ N P +V+ S+ N
Sbjct: 325 EDSLEN--NEGVPSP---------MLSISNLTQEQVQDYVNKTNSHLPAG-KQVEISLVN 372
Query: 464 LED--VIRERNVAYFQLETTHTGERPAELIDNAFGLKEVYTKSEYDVPKELNKEWQKNNP 521
V+ +G P L L++ S D + E +K
Sbjct: 373 GAKNLVV--------------SGP-PQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RK--L 414
Query: 522 VIDNRTLAVKKFLV--------LLKE--KLLKKEYAKMKNEEKEVAQ----IFATYKDVD 567
NR FL LL L+ K+ K N ++ T+ D
Sbjct: 415 KFSNR------FLPVASPFHSHLLVPASDLINKDLVK-NNVSFNAKDIQIPVYDTFDGSD 467
Query: 568 VEAVQEKYPDVDVEEMCVKRV 588
+ + + V+ + V
Sbjct: 468 LRVLSGSISERIVDCIIRLPV 488
Score = 38.1 bits (88), Expect = 0.017
Identities = 49/354 (13%), Positives = 94/354 (26%), Gaps = 131/354 (37%)
Query: 270 GRDFCTSTYNRDNPE-----NEATFSHPNINFHFFPFLLFRHIQMLRKHPIQKAIHTSSK 324
G D Y + N A + HF F + ++ +P+ IH
Sbjct: 1632 GMDL----YKT-SKAAQDVWNRA-------DNHFKDTYGFSILDIVINNPVNLTIH---- 1675
Query: 325 LLDLNEFFDSPKNFGAEQVRVGRSWRK--EELRVKSSSDLHKLWYVLLKEQNMLKTMEHE 382
FG E+ G+ R+ + ++ D + KE N EH
Sbjct: 1676 -------------FGGEK---GKRIRENYSAMIFETIVDGKLKTEKIFKEIN-----EHS 1714
Query: 383 CKEKFIVFPNPERIDKNFFPNFIDPNLLNVPNFIKCSVSSYRYVLLKEQNMLKTME---- 438
F + + F P L + +++ LK + ++
Sbjct: 1715 TS---YTFRSEK--GLLSATQFTQPALTLM------EKAAFE--DLKSKGLIPADATFAG 1761
Query: 439 H---E-----CKEKFIVFPNPERIDKVQESMENLEDVI---RER-NVAYFQLETTHTGER 486
H E + + M ++E ++ R + G
Sbjct: 1762 HSLGEYAALAS---------------LADVM-SIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 487 PAELIDNAFGLKEVYTKSEYDVPKELNKEWQK-----------NNP----VI--DNRTLA 529
+I A V + + + + K N V D R A
Sbjct: 1806 NYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR--A 1861
Query: 530 VKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDVEAVQEKYPDVDVEEM 583
+ +L + K++ +D+ +Q+ +VE
Sbjct: 1862 LDTVTNVLN-------FIKLQK--------------IDIIELQKSLSLEEVEGH 1894
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.64
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 21/61 (34%)
Query: 347 RSWR-----------------KEELRVKSSSDLHKLWYVLLKEQNMLKTMEH--ECKEKF 387
R WR ++E R K+ DL + W EQ + K + + F
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE-WNQRQSEQ-VEKNKINNRIADKAF 145
Query: 388 I 388
Sbjct: 146 Y 146
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal
stress protein, unknown function; HET: ATP; 2.90A
{Mycobacterium tuberculosis} PDB: 2jax_A*
Length = 309
Score = 31.6 bits (72), Expect = 1.2
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 568 VEAVQEKYPDVDVEEMCVKRVSSKVLLNES---DLL 600
+ QE+YP+V + + V+ ++ L+ S L+
Sbjct: 236 LAGWQERYPNVAITRVVVRDQPARQLVQRSEEAQLV 271
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 30.7 bits (70), Expect = 2.1
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 1 MLKTMEHECKEKF-IVFPNPE---RIDKVQESMENLE-DVI---RERNVAYFQLET---T 49
M++T ++ ZK F E R B+++ M + D + N+ Y+ +
Sbjct: 3 MIZTZKYHNGZKKYTPFSZAEMTRRZBRLRAWMAKSBIDAVLFTSYHNINYY---SGWLY 59
Query: 50 HTGERPAELIDNAFVCILKDKVFLFTP 76
R + I + K +
Sbjct: 60 CYFGRKYAZV------IBZVKAVTISK 80
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 31.1 bits (71), Expect = 2.2
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 14/68 (20%)
Query: 743 IRERNVAYFQLETTHTGERPAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNKE 802
+R +N Y + + TH +R C E S+Y K +
Sbjct: 371 VRWKN-MYKEGDLTHFNQRLEG-------------FSVPRCWDECLKSSQYYARKSEVDK 416
Query: 803 WQKNNPVI 810
+ K N
Sbjct: 417 FNKENCWK 424
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 30.7 bits (70), Expect = 2.2
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 18/77 (23%)
Query: 509 PKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIFATYKDVDV 568
KEL EW K +P LV ++ L K +EE+E + K+
Sbjct: 283 SKELENEWAKKDP------------LVRFRKFLEAKGLW---SEEEE-NNVIEQAKEEIK 326
Query: 569 EAVQ--EKYPDVDVEEM 583
EA++ ++ P V ++
Sbjct: 327 EAIKKADETPKQKVTDL 343
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 29.9 bits (68), Expect = 4.6
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 743 IRERNVAYFQLETTHTGERPAELIDNA--------FGKYLSSFHVSSSCLKEVYTKSEYD 794
+R N Y E P+ A +G+ ++ + + + + +
Sbjct: 371 LRALN-FYDPPERGGLSAPPSPPEPIATKKTQTTHYGQEVADCVLGE-LVTRLQKSANFT 428
Query: 795 VPKELNKEWQKNNPVI 810
+ W N +
Sbjct: 429 TRRAEIAAWNSTNRTL 444
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural
G midwest center for structural genomics; 1.85A
{Streptococcus pyogenes m1 gas}
Length = 132
Score = 28.2 bits (63), Expect = 5.9
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 9/65 (13%)
Query: 18 NPERIDKVQESME--NLEDVI--RERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFL 73
+ ++D+++ ++ E I + Y ER L
Sbjct: 1 SNAKLDQIRLYLDQKGAELAIFSDPVTINYLTGFFCDPHERQL-----FLFVYHDLAPVL 55
Query: 74 FTPVL 78
F P L
Sbjct: 56 FVPAL 60
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall
peptidase, creatinase/prolidase N-terminal domain,
PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Length = 140
Score = 27.8 bits (62), Expect = 8.0
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 18 NPERIDKVQESME--NLEDVI--RERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFL 73
+ +++++Q+ + + + Y + ER A V F+
Sbjct: 2 HMTKLEQIQQWTAQHHASMTYLSNPKTIEYLTGFGSDPIERVL-----ALVVFPDQDPFI 56
Query: 74 FTPVL 78
F P L
Sbjct: 57 FAPAL 61
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 28.8 bits (65), Expect = 8.5
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 762 PAELIDNAFGKYLSSFHVSSSCLKEVYTKSEYDVPKELNK 801
L G Y SSF + Y D+ EL
Sbjct: 280 RETLGLGYAGVY-SSFLRHAEIAAAKYNLKTLDILVELGH 318
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 2.20A {Mycobacterium ulcerans}
Length = 378
Score = 28.8 bits (65), Expect = 9.4
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 20 ERIDKVQESME--NLEDVI--RERNVAYFQLETTHTGERPAELIDNAFVCILKDKVFLFT 75
R+ + E L ++ ++ Y T ER L+ A +
Sbjct: 17 RRLAAAAAATEQAGLAGLVITPGYDLRYLIGSRADTFERLTALVLPA-----SGVPTIVL 71
Query: 76 PVL 78
P L
Sbjct: 72 PRL 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,892,258
Number of extensions: 847721
Number of successful extensions: 3108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3083
Number of HSP's successfully gapped: 29
Length of query: 908
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 806
Effective length of database: 3,853,851
Effective search space: 3106203906
Effective search space used: 3106203906
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)