RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13883
         (908 letters)



>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus
           [TaxId: 1280]}
          Length = 145

 Score = 31.4 bits (71), Expect = 0.24
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 501 YTKSEYDVPKELNKEWQKNNPVIDNRTLAVKKFLVLLKEKLLKKEYAKMKNEEKEVAQIF 560
             K +Y+  K+L K++++ NP      + +K F     E L  +EY ++    K   + F
Sbjct: 76  RKKVQYEEYKKLYKKYKEENP---TSKVKMKTFDQYTIEDLTMREYNELTESLKSAVKDF 132

Query: 561 ATYKDVDVEAVQEKYPD 577
                 DVE ++ ++ D
Sbjct: 133 EK----DVEIIENQHHD 145


>d1e6ya1 a.89.1.1 (A:1284-1569) Alpha chain {Archaeon Methanosarcina
           barkeri [TaxId: 2208]}
          Length = 286

 Score = 27.7 bits (62), Expect = 6.7
 Identities = 7/32 (21%), Positives = 17/32 (53%)

Query: 10  KEKFIVFPNPERIDKVQESMENLEDVIRERNV 41
            +K+       + +KV+ S+E ++D+  E  +
Sbjct: 85  NDKYNGAATVGKDNKVKASLEVVKDIATESTL 116



 Score = 27.7 bits (62), Expect = 6.7
 Identities = 7/32 (21%), Positives = 17/32 (53%)

Query: 442 KEKFIVFPNPERIDKVQESMENLEDVIRERNV 473
            +K+       + +KV+ S+E ++D+  E  +
Sbjct: 85  NDKYNGAATVGKDNKVKASLEVVKDIATESTL 116


>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
           1280]}
          Length = 173

 Score = 26.8 bits (59), Expect = 8.6
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 277 TYNRD--NPENEATFSHPNINFHFFPFLLFRHIQMLR 311
           TYN +  + E    F HPN+    F F      +M+ 
Sbjct: 35  TYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIY 71


>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId:
           1280]}
          Length = 183

 Score = 26.8 bits (59), Expect = 9.1
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 277 TYNRD--NPENEATFSHPNINFHFFPFLLFRHIQMLR 311
           T N D  N  +     +P ++    P       QM+ 
Sbjct: 45  TKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIE 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,456,381
Number of extensions: 171147
Number of successful extensions: 630
Number of sequences better than 10.0: 1
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 24
Length of query: 908
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 814
Effective length of database: 1,116,976
Effective search space: 909218464
Effective search space used: 909218464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)