BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13885
(246 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Etv1
Complexed With Dna
Length = 106
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/80 (87%), Positives = 75/80 (93%)
Query: 167 PATPRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNY 226
P + RRGSLQLWQFLVALLDDP+N+ I WTGRGMEFKL+EPEEVARRWG+QKNRPAMNY
Sbjct: 4 PTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNY 63
Query: 227 DKLSRSLRYYYEKGIMQKVA 246
DKLSRSLRYYYEKGIMQKVA
Sbjct: 64 DKLSRSLRYYYEKGIMQKVA 83
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/45 (95%), Positives = 44/45 (97%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFC 120
VARRWG+QKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF
Sbjct: 48 VARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFV 92
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%)
Query: 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKL 229
P G +QLWQFL+ LL D NASCI W G EFK+ +P+EVARRWG +K++P MNYDKL
Sbjct: 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKL 60
Query: 230 SRSLRYYYEKGIMQKV 245
SR+LRYYY+K IM KV
Sbjct: 61 SRALRYYYDKNIMTKV 76
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
VARRWG +K++P MNYDKLSR+LRYYY+K IM KV G+RY YKF
Sbjct: 42 VARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKF 85
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 57/73 (78%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D NA CI W G EFKL +P+EVARRWG +K++P MNYDKLSR+
Sbjct: 6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRA 65
Query: 233 LRYYYEKGIMQKV 245
LRYYY+K IM KV
Sbjct: 66 LRYYYDKNIMSKV 78
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
VARRWG +K++P MNYDKLSR+LRYYY+K IM KV G+RY Y+F
Sbjct: 44 VARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRF 87
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 58/74 (78%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D ++ S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 63 GPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 122
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 123 LRYYYDKNIIHKTA 136
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + + L
Sbjct: 101 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLL 152
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 55 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 114
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 115 LRYYYDKNIIHKTA 128
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + L
Sbjct: 93 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 144
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 54 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 113
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 114 LRYYYDKNIIHKTA 127
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + L
Sbjct: 92 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 143
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 33 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 92
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 93 LRYYYDKNIIHKTA 106
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + + L
Sbjct: 71 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLL 122
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 54 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 113
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 114 LRYYYDKNIIHKTA 127
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + L
Sbjct: 92 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 143
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 38 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 97
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 98 LRYYYDKNIIHKTA 111
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + L
Sbjct: 76 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 34 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 93
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 94 LRYYYDKNIIHKTA 107
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + L
Sbjct: 72 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 123
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 3 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 62
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 63 LRYYYDKNIIHKTA 76
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F + + L
Sbjct: 41 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 92
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 57/74 (77%)
Query: 173 GSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
G +QLWQFL+ LL D + S I WTG G EFKL +P+EVARRWG +KN+P MNY+KLSR
Sbjct: 14 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 73
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I+ K A
Sbjct: 74 LRYYYDKNIIHKTA 87
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFC 120
VARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F
Sbjct: 52 VARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV 96
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 174 SLQLWQFLVALLDDPNNASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
S+ LWQFL+ LL + N I WT R G EFKLV+ EEVAR WG++KN+ MNYDKLSR+
Sbjct: 4 SVTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRA 63
Query: 233 LRYYYEKGIMQKVA 246
LRYYY+K I++KV+
Sbjct: 64 LRYYYDKNIIRKVS 77
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 41/46 (89%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCT 121
VAR WG++KN+ MNYDKLSR+LRYYY+K I++KV+G+++VYKF +
Sbjct: 42 VARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVS 87
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 175 LQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLR 234
+QLWQFL+ LL D + CI W G EFKL +PE VA++WG +KN+P MNY+KLSR+LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 235 YYYEKGIMQKV 245
YYY+ ++ KV
Sbjct: 61 YYYDGDMICKV 71
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 39/48 (81%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123
VA++WG +KN+P MNY+KLSR+LRYYY+ ++ KV G+R+VYKF +
Sbjct: 37 VAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDL 84
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 188 PNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV 245
P N I WT +FKL++ EEVAR WG++KN+P MNYDKLSR+LRYYY K I++KV
Sbjct: 19 PQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKV 76
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCT 121
VAR WG++KN+P MNYDKLSR+LRYYY K I++KV G+++VYKF +
Sbjct: 42 VARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVS 87
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 188 PNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV 245
P N I WT +FKL++ EEVAR WG++KN+P MNYDKLSR+LRYYY K I++KV
Sbjct: 18 PQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKV 75
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 40/46 (86%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCT 121
VAR WG++KN+P MNYDKLSR+LRYYY K I++KV G+++VYKF +
Sbjct: 41 VARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVS 86
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The Protein-Dna
Complex Of Human Pdef Ets Domain Bound To The Prostate
Specific Antigen Regulatory Site
Length = 97
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 53/73 (72%), Gaps = 4/73 (5%)
Query: 175 LQLWQFLVALLDDPNN-ASCIVWTGR--GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSR 231
+ LWQFL LL P++ I W + G+ FK+ + +VAR WG++KNRPAMNYDKLSR
Sbjct: 11 IHLWQFLKELLLKPHSYGRFIRWLNKEKGI-FKIEDSAQVARLWGIRKNRPAMNYDKLSR 69
Query: 232 SLRYYYEKGIMQK 244
S+R YY+KGI++K
Sbjct: 70 SIRQYYKKGIIRK 82
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV-AGERYVYKFCTSV 123
VAR WG++KNRPAMNYDKLSRS+R YY+KGI++K +R VY+F +
Sbjct: 49 VARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHPI 97
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 177 LWQFLVALLDDPNNASCIVWTGRGME-FKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRY 235
LW ++ LL D + I W + + F++V+P +AR WG KNR M Y+K+SR+LR+
Sbjct: 7 LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66
Query: 236 YYEKGIMQK 244
YY+ I++K
Sbjct: 67 YYKLNIIRK 75
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTS 122
+AR WG KNR M Y+K+SR+LR+YY+ I++K G+R +++F +
Sbjct: 42 LARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKT 88
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 168 ATPRRGSLQLWQFLVALLDDPNNASCIVWTGRGME-FKLVEPEEVARRWGVQKNRPAMNY 226
++ G LW ++ LL D + I W + + F++V+P +AR WG KNR M Y
Sbjct: 2 SSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTY 61
Query: 227 DKLSRSLRYYYEKGIMQK 244
+K+SR+LR+YY+ I++K
Sbjct: 62 EKMSRALRHYYKLNIIRK 79
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
+AR WG KNR M Y+K+SR+LR+YY+ I++K G+R +++F
Sbjct: 46 LARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRF 89
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 177 LWQFLVALLDDPNNASCIVWTGRGME-FKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRY 235
LW ++ LL D + I W + + F++V+P +AR WG KNR M Y+K+SR+LR+
Sbjct: 7 LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66
Query: 236 YYEKGIMQK 244
YY+ I++K
Sbjct: 67 YYKLNIIRK 75
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTS 122
+AR WG KNR M Y+K+SR+LR+YY+ I++K G+R +++F +
Sbjct: 42 LARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKT 88
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 176 QLWQFLVALLDDPN-NASCIVWTGR--GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
LW+F+ LL P N + W R G+ F++V+ E +A+ WG +K M Y+KLSR+
Sbjct: 10 HLWEFVRDLLLSPEENCGILEWEDREQGI-FRVVKSEALAKMWGQRKKNDRMTYEKLSRA 68
Query: 233 LRYYYEKGIMQKV 245
LRYYY+ GI+++V
Sbjct: 69 LRYYYKTGILERV 81
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
+A+ WG +K M Y+KLSR+LRYYY+ GI+++V R VYKF
Sbjct: 47 LAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD-RRLVYKF 89
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 172 RGSLQLWQFLVALLDDPN-NASCIVWTGR--GMEFKLVEPEEVARRWGVQKNRPAMNYDK 228
RG+ LW+F+ +L P N + W R G+ FK + E VA+ WG +K M Y+K
Sbjct: 3 RGT-HLWEFIRDILIHPELNEGLMKWENRHEGV-FKFLRSEAVAQLWGQKKKNSNMTYEK 60
Query: 229 LSRSLRYYYEKGIMQKV 245
LSR++RYYY++ I+++V
Sbjct: 61 LSRAMRYYYKREILERV 77
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 76 VARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVT 124
VA+ WG +K M Y+KLSR++RYYY++ I+++V G R VYKF + +
Sbjct: 43 VAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNSS 91
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex
pdb|1PUE|F Chain F, Pu.1 Ets Domain-Dna Complex
Length = 89
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 175 LQLWQFLVALLDDPNNASCIVWTGRG---MEFKLVEPEEVARRWGVQK-NRPAMNYDKLS 230
++L+QFL+ LL + I W + +F E +A RWG+QK NR M Y+K++
Sbjct: 2 IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61
Query: 231 RSLRYYYEKGIMQKV 245
R+LR Y + G ++KV
Sbjct: 62 RALRNYGKTGEVKKV 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,341,157
Number of Sequences: 62578
Number of extensions: 242920
Number of successful extensions: 472
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 47
length of query: 246
length of database: 14,973,337
effective HSP length: 96
effective length of query: 150
effective length of database: 8,965,849
effective search space: 1344877350
effective search space used: 1344877350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)