Query psy13885
Match_columns 246
No_of_seqs 324 out of 539
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 22:56:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4avp_A ETS translocation varia 100.0 4.6E-37 1.6E-41 240.1 7.3 81 166-246 3-83 (106)
2 1fli_A FLI-1; transcription/DN 100.0 1.5E-36 5.2E-41 233.6 5.9 77 170-246 1-77 (98)
3 1bc8_C SAP-1, protein (SAP-1 E 100.0 7.8E-36 2.7E-40 227.9 7.5 75 172-246 2-76 (93)
4 2ypr_A Protein FEV; transcript 100.0 1.3E-35 4.5E-40 230.4 7.6 77 170-246 3-79 (102)
5 1wwx_A E74-like factor 5 ESE-2 100.0 3.1E-35 1.1E-39 229.5 8.1 78 169-246 3-82 (107)
6 1yo5_C SAM pointed domain cont 100.0 4E-35 1.4E-39 225.5 5.8 77 170-246 6-84 (97)
7 2dao_A Transcription factor ET 100.0 1.1E-34 3.8E-39 229.5 7.7 77 170-246 4-81 (118)
8 1awc_A Protein (GA binding pro 100.0 2.7E-34 9.4E-39 224.9 8.3 72 175-246 1-72 (110)
9 1gvj_A C-ETS-1 protein, P54; t 100.0 3.7E-34 1.3E-38 233.8 7.8 77 170-246 35-111 (146)
10 1pue_E Protein (transcription 100.0 4.5E-34 1.5E-38 216.8 7.3 73 174-246 1-77 (89)
11 2nny_A C-ETS-1 protein, P54; p 100.0 1.1E-33 3.9E-38 235.7 7.7 77 170-246 60-136 (171)
12 1hbx_G ETS-domain protein ELK- 100.0 8.8E-34 3E-38 233.0 6.3 75 172-246 3-77 (157)
13 3jtg_A ETS-related transcripti 100.0 2.5E-33 8.7E-38 218.0 7.8 73 174-246 4-78 (103)
14 2lf8_A Transcription factor ET 100.0 1.4E-34 4.9E-39 231.1 0.0 76 171-246 1-77 (128)
15 1bc8_C SAP-1, protein (SAP-1 E 99.8 8.1E-21 2.8E-25 144.9 3.2 52 72-123 37-88 (93)
16 2dao_A Transcription factor ET 99.8 1.9E-20 6.5E-25 148.1 3.8 53 73-125 43-95 (118)
17 1fli_A FLI-1; transcription/DN 99.8 2.3E-20 8E-25 143.5 3.7 50 73-122 39-88 (98)
18 4avp_A ETS translocation varia 99.8 5.1E-20 1.7E-24 143.7 3.2 52 72-123 44-95 (106)
19 1awc_A Protein (GA binding pro 99.8 4.4E-20 1.5E-24 144.5 2.7 52 72-123 33-84 (110)
20 1yo5_C SAM pointed domain cont 99.8 5.8E-20 2E-24 141.2 3.2 51 72-122 45-96 (97)
21 2lf8_A Transcription factor ET 99.6 2E-20 6.8E-25 149.5 0.0 54 72-125 38-91 (128)
22 3jtg_A ETS-related transcripti 99.8 1.2E-19 4E-24 141.1 4.3 51 73-123 40-90 (103)
23 2ypr_A Protein FEV; transcript 99.8 1.2E-19 4.2E-24 140.7 3.2 51 72-122 40-90 (102)
24 1hbx_G ETS-domain protein ELK- 99.8 1.7E-19 5.7E-24 148.3 3.6 52 72-123 38-89 (157)
25 1wwx_A E74-like factor 5 ESE-2 99.8 2.7E-19 9.2E-24 139.5 3.9 54 72-126 43-96 (107)
26 1pue_E Protein (transcription 99.8 2.2E-19 7.4E-24 136.1 3.2 51 72-123 37-88 (89)
27 1gvj_A C-ETS-1 protein, P54; t 99.8 1.9E-19 6.7E-24 146.9 3.1 52 72-123 72-123 (146)
28 2nny_A C-ETS-1 protein, P54; p 99.7 4.2E-19 1.4E-23 148.0 2.9 52 72-123 97-148 (171)
29 2ldu_A Heat shock factor prote 96.2 0.011 3.8E-07 46.8 6.8 62 174-237 17-79 (125)
30 1hks_A Heat-shock transcriptio 96.0 0.0051 1.7E-07 47.3 3.9 62 177-239 7-68 (106)
31 3hts_B Heat shock transcriptio 96.0 0.0082 2.8E-07 46.1 5.0 62 175-237 13-74 (102)
32 2irf_G IRF-2, interferon regul 65.4 11 0.00039 28.9 5.4 62 173-235 4-83 (113)
33 2dll_A Interferon regulatory f 44.2 47 0.0016 25.7 5.8 48 174-222 6-66 (121)
34 3qu3_A IRF-7, interferon regul 36.5 72 0.0025 25.3 5.8 48 174-222 12-71 (137)
35 3qu6_A IRF3 protein; helix-tur 34.2 60 0.0021 25.0 4.9 61 174-235 8-85 (116)
36 1knv_A BSE634I restriction end 32.2 42 0.0015 29.8 4.2 48 188-237 5-54 (293)
37 2oz6_A Virulence factor regula 29.3 1.7E+02 0.0057 22.5 7.1 58 175-244 139-196 (207)
38 1mzb_A Ferric uptake regulatio 21.9 63 0.0022 24.5 3.1 27 219-245 46-72 (136)
39 2fe3_A Peroxide operon regulat 21.6 68 0.0023 24.7 3.2 27 219-245 49-75 (145)
40 2fu4_A Ferric uptake regulatio 21.6 67 0.0023 21.7 2.9 35 209-245 37-71 (83)
41 2o61_A Transcription factor P6 21.3 1.3E+02 0.0043 29.1 5.5 79 156-235 407-502 (540)
42 2o03_A Probable zinc uptake re 21.1 68 0.0023 24.2 3.1 27 219-245 38-64 (131)
43 2iu1_A EIF5, eukaryotic transl 21.0 7.5 0.00026 32.9 -2.7 12 21-32 145-156 (208)
44 3mwm_A ZUR, putative metal upt 20.6 63 0.0022 24.8 2.8 27 219-245 41-67 (139)
No 1
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=100.00 E-value=4.6e-37 Score=240.08 Aligned_cols=81 Identities=86% Similarity=1.432 Sum_probs=72.1
Q ss_pred CCCCCCCCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeC
Q psy13885 166 PPATPRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV 245 (246)
Q Consensus 166 ~~~~~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv 245 (246)
||+++++|+++|||||++||.|+++++||+|||++++|+|+||++||+|||++|||++|||+||||||||||++|||+||
T Consensus 3 ~~~~~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv 82 (106)
T 4avp_A 3 GPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKV 82 (106)
T ss_dssp --------CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred CCCCCCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEec
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy13885 246 A 246 (246)
Q Consensus 246 ~ 246 (246)
+
T Consensus 83 ~ 83 (106)
T 4avp_A 83 A 83 (106)
T ss_dssp T
T ss_pred C
Confidence 5
No 2
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=1.5e-36 Score=233.64 Aligned_cols=77 Identities=64% Similarity=1.203 Sum_probs=74.6
Q ss_pred CCCCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 170 ~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+++|+++||+||++||.|+++.+||+||+++++|+|+||++||+|||.+||||+|||+||||||||||++|||.||+
T Consensus 1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~ 77 (98)
T 1fli_A 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVH 77 (98)
T ss_dssp CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBG
T ss_pred CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=100.00 E-value=7.8e-36 Score=227.86 Aligned_cols=75 Identities=56% Similarity=1.052 Sum_probs=72.9
Q ss_pred CCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 172 RGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 172 ~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
.|+++||+||++||.||++++||+|||++++|+|+||++||+|||.+||+|+|||+||||||||||++|||.||+
T Consensus 2 ~~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~ 76 (93)
T 1bc8_C 2 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVN 76 (93)
T ss_dssp CCCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECT
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=100.00 E-value=1.3e-35 Score=230.42 Aligned_cols=77 Identities=62% Similarity=1.146 Sum_probs=74.9
Q ss_pred CCCCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 170 ~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+++|+++||+||++||.|+++.+||+|++.+++|+|+||++||+|||++||||+|||+||||||||||++|||.||+
T Consensus 3 ~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~ 79 (102)
T 2ypr_A 3 KGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVH 79 (102)
T ss_dssp CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECS
T ss_pred CCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999995
No 5
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=3.1e-35 Score=229.47 Aligned_cols=78 Identities=41% Similarity=0.841 Sum_probs=73.9
Q ss_pred CCCCCchhhHHHHHHhcCCCC-CCCceeeecC-cceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 169 TPRRGSLQLWQFLVALLDDPN-NASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 169 ~~~~g~~~Lw~FLl~lL~d~~-~~~~I~Wt~~-~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+.++|+++|||||++||.||+ +.+||+||++ .++|+|+||++||+|||.+||||+|||+||||||||||++|||.||.
T Consensus 3 sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv~ 82 (107)
T 1wwx_A 3 SGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERVD 82 (107)
T ss_dssp CCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECCS
T ss_pred CCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecc
Confidence 457899999999999999996 6899999998 68999999999999999999999999999999999999999999984
No 6
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=4e-35 Score=225.50 Aligned_cols=77 Identities=49% Similarity=0.874 Sum_probs=71.1
Q ss_pred CCCCchhhHHHHHHhcCCCC-CCCceeeecC-cceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 170 PRRGSLQLWQFLVALLDDPN-NASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 170 ~~~g~~~Lw~FLl~lL~d~~-~~~~I~Wt~~-~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
.++|+++||+||++||.||+ +++||+||++ +++|+|+||++||+|||.+||||+|||+||||||||||++|||.||+
T Consensus 6 ~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~Kv~ 84 (97)
T 1yo5_C 6 LGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPD 84 (97)
T ss_dssp ---CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCS
T ss_pred CCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEeecc
Confidence 45789999999999999986 6999999987 68999999999999999999999999999999999999999999984
No 7
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=229.49 Aligned_cols=77 Identities=38% Similarity=0.766 Sum_probs=73.7
Q ss_pred CCCCchhhHHHHHHhcCCCCCCCceeeecCc-ceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 170 ~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+.+|+++||+||++||.||++.+||+||+++ ++|+|+||++||+|||.+||||+|||+||||||||||++|||.||+
T Consensus 4 ~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~ 81 (118)
T 2dao_A 4 GSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEP 81 (118)
T ss_dssp CCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCS
T ss_pred ccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEecc
Confidence 4578999999999999999999999999985 6999999999999999999999999999999999999999999985
No 8
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=2.7e-34 Score=224.95 Aligned_cols=72 Identities=56% Similarity=1.086 Sum_probs=70.5
Q ss_pred hhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 175 LQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 175 ~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
++|||||++||.||++++||+|||++++|+|+||++||+|||.+||+|+|||+||||||||||++|||.||+
T Consensus 1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~ 72 (110)
T 1awc_A 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQ 72 (110)
T ss_dssp CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECT
T ss_pred CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeecc
Confidence 589999999999999999999999999999999999999999999999999999999999999999999995
No 9
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=100.00 E-value=3.7e-34 Score=233.76 Aligned_cols=77 Identities=61% Similarity=1.124 Sum_probs=74.6
Q ss_pred CCCCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 170 ~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+++|+++||+||++||.|+++++||+|||++++|+|+||++||+|||.+||||+|||+||||||||||++|||.||+
T Consensus 35 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~ 111 (146)
T 1gvj_A 35 TGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTA 111 (146)
T ss_dssp HTCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999995
No 10
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=4.5e-34 Score=216.79 Aligned_cols=73 Identities=38% Similarity=0.744 Sum_probs=69.5
Q ss_pred chhhHHHHHHhcCCCCCCCceeeecCc-ceEEEe--ChHHHHHHHhhhc-CCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 174 SLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLV--EPEEVARRWGVQK-NRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 174 ~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~--d~~~va~lWg~~k-~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+++|||||++||.||++++||+|||+. ++|+|+ ||++||+|||.+| |+|+|||+||||||||||++|||.||+
T Consensus 1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~ 77 (89)
T 1pue_E 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK 77 (89)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS
T ss_pred CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc
Confidence 479999999999999999999999985 899997 7999999999999 899999999999999999999999995
No 11
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=100.00 E-value=1.1e-33 Score=235.72 Aligned_cols=77 Identities=61% Similarity=1.136 Sum_probs=74.7
Q ss_pred CCCCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 170 ~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+++|+++|||||++||.|+++++||+|||++++|+|+||++||+|||.+|||++|||+||||||||||++|||.||+
T Consensus 60 ~~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~ 136 (171)
T 2nny_A 60 TGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTA 136 (171)
T ss_dssp HTCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECT
T ss_pred CCCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999995
No 12
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=8.8e-34 Score=233.01 Aligned_cols=75 Identities=56% Similarity=1.052 Sum_probs=73.0
Q ss_pred CCchhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 172 RGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 172 ~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
.|+++||+||++||.|+++++||+||+++++|||+||++||+|||.+||||+|||+||||||||||++|||.||+
T Consensus 3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~ 77 (157)
T 1hbx_G 3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVN 77 (157)
T ss_dssp CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999995
No 13
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=99.98 E-value=2.5e-33 Score=218.03 Aligned_cols=73 Identities=38% Similarity=0.838 Sum_probs=69.5
Q ss_pred chhhHHHHHHhcCCCC-CCCceeeecC-cceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 174 SLQLWQFLVALLDDPN-NASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 174 ~~~Lw~FLl~lL~d~~-~~~~I~Wt~~-~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
+++|||||++||.||+ +++||+||++ .++|+|+||++||+|||++||||+|||+||||||||||++|||.||+
T Consensus 4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~ 78 (103)
T 3jtg_A 4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVD 78 (103)
T ss_dssp CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCT
T ss_pred cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecC
Confidence 3599999999999998 7899999998 58999999999999999999999999999999999999999999995
No 14
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=99.96 E-value=1.4e-34 Score=231.10 Aligned_cols=76 Identities=37% Similarity=0.738 Sum_probs=73.0
Q ss_pred CCCchhhHHHHHHhcCCCCCCCceeeecCc-ceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeCC
Q psy13885 171 RRGSLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246 (246)
Q Consensus 171 ~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv~ 246 (246)
++|+++||+||++||.|+++.+||+|||++ ++|||+||++||+|||.+||||+|||+||||||||||++|||.||+
T Consensus 1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~ 77 (128)
T 2lf8_A 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEP 77 (128)
Confidence 478899999999999999999999999985 6999999999999999999999999999999999999999999985
No 15
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=99.80 E-value=8.1e-21 Score=144.88 Aligned_cols=52 Identities=60% Similarity=1.129 Sum_probs=49.7
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
++++||++||.+||+|+|||+||||||||||++|||+||+|+|+||+|++.+
T Consensus 37 d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~vY~F~~~p 88 (93)
T 1bc8_C 37 QAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYP 88 (93)
T ss_dssp THHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTEEEETTTT
T ss_pred CHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEEeCCCh
Confidence 3689999999999999999999999999999999999999999999999864
No 16
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-20 Score=148.10 Aligned_cols=53 Identities=40% Similarity=0.801 Sum_probs=50.3
Q ss_pred HHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceeccccccCC
Q psy13885 73 EKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTN 125 (246)
Q Consensus 73 eeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~~~ 125 (246)
+++||++||.+||+|+|||+||||||||||++|||+||+|+|+||+|++++..
T Consensus 43 p~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~G~r~vY~F~~~p~~ 95 (118)
T 2dao_A 43 PNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPDE 95 (118)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCSSSSSEEEECSCSGG
T ss_pred HHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEeccCCeEEEEecCCHHH
Confidence 67999999999999999999999999999999999999999999999987643
No 17
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.79 E-value=2.3e-20 Score=143.52 Aligned_cols=50 Identities=66% Similarity=1.161 Sum_probs=48.3
Q ss_pred HHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceeccccc
Q psy13885 73 EKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTS 122 (246)
Q Consensus 73 eeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~ 122 (246)
.++||++||.+||+|+|||+||||||||||++|||+||+|+|+||+|+..
T Consensus 39 ~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~gkr~vY~F~~~ 88 (98)
T 1fli_A 39 PDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFH 88 (98)
T ss_dssp HHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGSSBCCCCTT
T ss_pred HHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecCCCeEEEEecCc
Confidence 68999999999999999999999999999999999999999999999774
No 18
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=99.78 E-value=5.1e-20 Score=143.74 Aligned_cols=52 Identities=87% Similarity=1.383 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
+.+.||++||.+||++.|||+||||||||||++|||+||+|+|+||+|++++
T Consensus 44 dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r~vYkF~~~p 95 (106)
T 4avp_A 44 EPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDP 95 (106)
T ss_dssp SHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCSSEEEECCSH
T ss_pred CHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCeEEEEecCCH
Confidence 3689999999999999999999999999999999999999999999999975
No 19
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=99.78 E-value=4.4e-20 Score=144.52 Aligned_cols=52 Identities=52% Similarity=1.061 Sum_probs=49.7
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
++++||++||.+||+|+|||+||||||||||++|||+||+|+|+||+|++++
T Consensus 33 d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~ 84 (110)
T 1awc_A 33 QPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDL 84 (110)
T ss_dssp SHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEECSCH
T ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEecCCCH
Confidence 3689999999999999999999999999999999999999999999999874
No 20
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=99.78 E-value=5.8e-20 Score=141.17 Aligned_cols=51 Identities=59% Similarity=1.075 Sum_probs=48.6
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccc-cccceeccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA-GERYVYKFCTS 122 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~-g~~~vY~F~~~ 122 (246)
++++||++||.+||+|+|||+||||||||||++|||+||+ |+|+||+|++.
T Consensus 45 d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~Kv~~g~r~vY~F~~~ 96 (97)
T 1yo5_C 45 DSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQFVHP 96 (97)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEECCSSCCTTEEEESCC
T ss_pred CHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEeeccCCcEEEEecCCC
Confidence 3689999999999999999999999999999999999997 89999999875
No 21
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=99.64 E-value=2e-20 Score=149.48 Aligned_cols=54 Identities=39% Similarity=0.803 Sum_probs=50.7
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceeccccccCC
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTN 125 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~~~ 125 (246)
++++||++||.+||+|+|||+||||||||||++|||+||+|+|+||+|++.+..
T Consensus 38 dpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~GqrlvY~F~~~p~~ 91 (128)
T 2lf8_A 38 DPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQRLLFRFMKTPDE 91 (128)
Confidence 467999999999999999999999999999999999999999999999998633
No 22
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=99.77 E-value=1.2e-19 Score=141.09 Aligned_cols=51 Identities=45% Similarity=0.925 Sum_probs=49.5
Q ss_pred HHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 73 EKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 73 eeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
++.||++||.+||+|+|||+||||||||||++|||+||+|+++||+|++++
T Consensus 40 p~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~vY~F~~~~ 90 (103)
T 3jtg_A 40 SEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNS 90 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTEEEBCTTC
T ss_pred HHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEEEEeCCCc
Confidence 689999999999999999999999999999999999999999999999975
No 23
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=99.76 E-value=1.2e-19 Score=140.70 Aligned_cols=51 Identities=63% Similarity=1.157 Sum_probs=48.4
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceeccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTS 122 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~ 122 (246)
++++||++||.+||+|+|||+||||||||||++|||+||+|+||||+|...
T Consensus 40 dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gkr~vYkF~~~ 90 (102)
T 2ypr_A 40 DPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRYAYRFDFQ 90 (102)
T ss_dssp SHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSCSSEEEECHH
T ss_pred ChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEeCCC
Confidence 368999999999999999999999999999999999999999999999654
No 24
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=99.76 E-value=1.7e-19 Score=148.33 Aligned_cols=52 Identities=60% Similarity=1.129 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
+.++||++||.+||+|+|||+||||||||||++|||+||+|+|+||+|++.+
T Consensus 38 dpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~GqrlvYkF~~~p 89 (157)
T 1hbx_G 38 QAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYP 89 (157)
T ss_dssp THHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTEEEESSTT
T ss_pred CcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEEEeeCCCH
Confidence 3689999999999999999999999999999999999999999999999874
No 25
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=99.76 E-value=2.7e-19 Score=139.52 Aligned_cols=54 Identities=43% Similarity=0.855 Sum_probs=49.7
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceeccccccCCC
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNG 126 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~~~g 126 (246)
++++||++||.+||+|+|||+||||||||||++|||+|| ++||||+|++++...
T Consensus 43 d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv-~~rlvY~F~~~~~~~ 96 (107)
T 1wwx_A 43 KSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV-DRRLVYKFGKNAHGW 96 (107)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC-SSSSEEEECSSCCSS
T ss_pred CHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEec-cceEEEEeCCchhhh
Confidence 368999999999999999999999999999999999999 599999999986433
No 26
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=99.75 E-value=2.2e-19 Score=136.11 Aligned_cols=51 Identities=41% Similarity=0.825 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccC-CCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQK-NRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~K-nk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
..++||++||.+| |+|+|||+||||||||||++|||+||+ +|+||+|++++
T Consensus 37 ~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r~vY~F~~~~ 88 (89)
T 1pue_E 37 HKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KKLTYQFSGEV 88 (89)
T ss_dssp THHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-STTEEEECTTC
T ss_pred ChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ceEEEeecccc
Confidence 4688999999999 899999999999999999999999997 89999998763
No 27
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=99.75 E-value=1.9e-19 Score=146.93 Aligned_cols=52 Identities=62% Similarity=1.196 Sum_probs=49.6
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
+.++||++||.+||+++|||+||||||||||++|||+||+|+|+||+|++++
T Consensus 72 dpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~ 123 (146)
T 1gvj_A 72 DPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDL 123 (146)
T ss_dssp SHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSSEEEECSCH
T ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeEEEEeccch
Confidence 4689999999999999999999999999999999999999999999998864
No 28
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=99.74 E-value=4.2e-19 Score=148.04 Aligned_cols=52 Identities=62% Similarity=1.209 Sum_probs=49.6
Q ss_pred HHHHHHHHhhccCCCCCCccchhhhhhHHhhhhccccccccccceecccccc
Q psy13885 72 EEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSV 123 (246)
Q Consensus 72 eeeevar~wG~~Knk~~m~y~klsr~LRyyy~k~i~~kv~g~~~vY~F~~~~ 123 (246)
+.++||++||.+||+++|||+||||||||||++|||+||+|+||||+|++++
T Consensus 97 dpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~GkrlvY~F~~d~ 148 (171)
T 2nny_A 97 DPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDL 148 (171)
T ss_dssp SHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTTEEEECTTH
T ss_pred CHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeEEEEeCCCh
Confidence 4689999999999999999999999999999999999999999999998864
No 29
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.21 E-value=0.011 Score=46.78 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=48.0
Q ss_pred chhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHH-HHhhhcCCCCCCHHHHHHHHHHhh
Q psy13885 174 SLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVAR-RWGVQKNRPAMNYDKLSRSLRYYY 237 (246)
Q Consensus 174 ~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~-lWg~~k~~~~m~y~klsR~lR~yy 237 (246)
...+-.=|..||.||.+.++|+|...|.-|.|.|+..+++ +--.. -..-||.++.|-|-.|-
T Consensus 17 ~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~y--Fkh~nfsSFvRQLN~YG 79 (125)
T 2ldu_A 17 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKY--FKHNNMASFVRQLNMYG 79 (125)
T ss_dssp CCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHH--SSCCCHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHh--cCCCcHHHHHHHhcccC
Confidence 3345556667889999999999999999999999998886 22221 22358999999998875
No 30
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=96.03 E-value=0.0051 Score=47.27 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=46.2
Q ss_pred hHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhc
Q psy13885 177 LWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEK 239 (246)
Q Consensus 177 Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~ 239 (246)
+-.=|..||.||.+.++|+|...|.-|.|.|+..+++-==. +--..-+|.++.|-|-.|-=+
T Consensus 7 F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~YGF~ 68 (106)
T 1hks_A 7 FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMYGFH 68 (106)
T ss_dssp THHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcCCCe
Confidence 34445578899999999999999999999999887762111 122346999999999888533
No 31
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=96.02 E-value=0.0082 Score=46.08 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.5
Q ss_pred hhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhh
Q psy13885 175 LQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYY 237 (246)
Q Consensus 175 ~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy 237 (246)
..+-.=|..||.||.+.++|+|...|.-|.|.|+..+++-==. +--..-+|.++.|-|-.|-
T Consensus 13 p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~YG 74 (102)
T 3hts_B 13 PAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMYG 74 (102)
T ss_dssp CHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHTT
T ss_pred CcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcCC
Confidence 3455666778899999999999999999999999888853111 1123468999999998875
No 32
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=65.42 E-value=11 Score=28.95 Aligned_cols=62 Identities=11% Similarity=0.332 Sum_probs=45.1
Q ss_pred CchhhHHHHHHhcCCCCCCCceeeecCc-ceEEEe-----------C-hHHHHHHHhhhcCCC-----CCCHHHHHHHHH
Q psy13885 173 GSLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLV-----------E-PEEVARRWGVQKNRP-----AMNYDKLSRSLR 234 (246)
Q Consensus 173 g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~-----------d-~~~va~lWg~~k~~~-----~m~y~klsR~lR 234 (246)
++.+|-.+|+..|....+. -+.|.++. ..|+|- + ...|=+.|.+++++- ..++-+.-+.||
T Consensus 4 ~r~rlrpWL~~qi~sg~yp-GL~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk~~~g~d~~dp~~WK~nfR 82 (113)
T 2irf_G 4 ERMRMRPWLEEQINSNTIP-GLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKTWKANFR 82 (113)
T ss_dssp -CCCHHHHHHHHHHTTCST-TCEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSCCTTTSCCCHHHHHHHHH
T ss_pred cccchHHHHHHHhccCCCC-CceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCCCCCCCCCCChhHHHHHHH
Confidence 4467999999999999997 56789986 689983 2 247788899998763 346656555555
Q ss_pred H
Q psy13885 235 Y 235 (246)
Q Consensus 235 ~ 235 (246)
.
T Consensus 83 c 83 (113)
T 2irf_G 83 C 83 (113)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.16 E-value=47 Score=25.66 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=38.7
Q ss_pred chhhHHHHHHhcCCCCCCCceeeecCc-ceEEEeCh------------HHHHHHHhhhcCCC
Q psy13885 174 SLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLVEP------------EEVARRWGVQKNRP 222 (246)
Q Consensus 174 ~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~d~------------~~va~lWg~~k~~~ 222 (246)
..+|-.+|+..|....+++ +.|.+.. ..|+|-=. ..|=+.|.+++++.
T Consensus 6 ~~~lr~WL~~qidsg~ypG-L~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk~ 66 (121)
T 2dll_A 6 SGKLRQWLIDQIDSGKYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF 66 (121)
T ss_dssp SCCHHHHHHHHHHHTCSSS-CEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSCC
T ss_pred ccchHHHHHHHhccCCCCC-ceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCCC
Confidence 3579999999999999987 8899986 58998421 46778899998764
No 34
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=36.53 E-value=72 Score=25.28 Aligned_cols=48 Identities=15% Similarity=0.386 Sum_probs=39.0
Q ss_pred chhhHHHHHHhcCCCCCCCceeeecCc-ceEEEe-----------ChHHHHHHHhhhcCCC
Q psy13885 174 SLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLV-----------EPEEVARRWGVQKNRP 222 (246)
Q Consensus 174 ~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~-----------d~~~va~lWg~~k~~~ 222 (246)
+++|-.+|+..|....+. -+.|++.. ..|+|- ....|=+.|++++++.
T Consensus 12 r~rlrpWL~~qidSg~yp-GL~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk~ 71 (137)
T 3qu3_A 12 RVLFGDWLLGEVSSGQYE-GLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGRW 71 (137)
T ss_dssp CCCHHHHHHHHHHHTCST-TCEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTSS
T ss_pred cccHHHHHHHHhccCCcC-CceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCCc
Confidence 468999999999999997 56689986 589985 2357889999999864
No 35
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=34.21 E-value=60 Score=25.00 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=43.8
Q ss_pred chhhHHHHHHhcCCCCCCCceeeecCc-ceEEEeCh-----------HHHHHHHhhhcCCC-----CCCHHHHHHHHHH
Q psy13885 174 SLQLWQFLVALLDDPNNASCIVWTGRG-MEFKLVEP-----------EEVARRWGVQKNRP-----AMNYDKLSRSLRY 235 (246)
Q Consensus 174 ~~~Lw~FLl~lL~d~~~~~~I~Wt~~~-~eF~~~d~-----------~~va~lWg~~k~~~-----~m~y~klsR~lR~ 235 (246)
+.+|-.+|+..|....+. -+.|++.. ..|+|-=. ..|=+.|++++++- ..++.+.-+.||.
T Consensus 8 k~rlr~WL~~qidsg~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk~~~g~d~~dp~~WKtnfRc 85 (116)
T 3qu6_A 8 KPRILPWLVSQLDLGQLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRS 85 (116)
T ss_dssp -CCHHHHHHHHHHHTCST-TCEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTSCCBTTBCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHhccCCcC-CcEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCcccCCCCCCCHHHHHHHHHH
Confidence 458999999999999997 56789986 58998422 34667899998763 3456665555554
No 36
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB: 3v1z_A* 3v20_A* 3v21_A*
Probab=32.22 E-value=42 Score=29.84 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=39.0
Q ss_pred CCCCCceeeecCc--ceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhh
Q psy13885 188 PNNASCIVWTGRG--MEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYY 237 (246)
Q Consensus 188 ~~~~~~I~Wt~~~--~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy 237 (246)
-.+.+||.|-.++ ..|+|....+++.+.|..- |.+++..+...||.|-
T Consensus 5 ~~~~~c~~~~~~n~~tk~ri~~~n~~~~~~~~~i--P~~~isd~l~~~~n~~ 54 (293)
T 1knv_A 5 LTNSNCVEEYKENGKTKIRIKPFNALIELYHHQT--PTGSIKENLDKLENYV 54 (293)
T ss_dssp GGGCSSEEEECCSSSCEEEECHHHHHHHHCSSSC--CCSBHHHHHHHHHHHH
T ss_pred cccchHHHHHHhcCCCcEEEchHHHHHHHHhccC--CCccHHHHHHHHHHHH
Confidence 3578999997764 5899977789999999877 4568988888888873
No 37
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=29.28 E-value=1.7e+02 Score=22.45 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcCCCCCCCceeeecCcceEEEeChHHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceee
Q psy13885 175 LQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQK 244 (246)
Q Consensus 175 ~~Lw~FLl~lL~d~~~~~~I~Wt~~~~eF~~~d~~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~k 244 (246)
.+|..||+.|...+.. .. .+.+..+. +....+|.+=| ++-.++||.|+...+.|+|..
T Consensus 139 ~Rl~~~L~~l~~~~~~---~~-~~~~~~~~-~t~~~lA~~lg-------~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 139 GRVARTLLDLCQQPDA---MT-HPDGMQIK-ITRQEIGRIVG-------CSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp HHHHHHHHHHTTSTTC---EE-ETTEEEEE-CCHHHHHHHHT-------SCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCC---CC-CCCceecc-cCHHHHHHHhC-------CCHHHHHHHHHHHHHCCCEEe
Confidence 4567777766543321 00 11112233 45678888766 678899999999999999864
No 38
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.92 E-value=63 Score=24.53 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=24.4
Q ss_pred cCCCCCCHHHHHHHHHHhhhccceeeC
Q psy13885 219 KNRPAMNYDKLSRSLRYYYEKGIMQKV 245 (246)
Q Consensus 219 k~~~~m~y~klsR~lR~yy~~~il~kv 245 (246)
+..|.|+.-++.|+|...-+.|+|.++
T Consensus 46 ~~~~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 46 EAGEDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 356789999999999999999999986
No 39
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.62 E-value=68 Score=24.65 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=24.3
Q ss_pred cCCCCCCHHHHHHHHHHhhhccceeeC
Q psy13885 219 KNRPAMNYDKLSRSLRYYYEKGIMQKV 245 (246)
Q Consensus 219 k~~~~m~y~klsR~lR~yy~~~il~kv 245 (246)
+..|.++.-++.|+|...-+.|+|.++
T Consensus 49 ~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 49 GKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp GGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 346789999999999999999999986
No 40
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.59 E-value=67 Score=21.75 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=27.0
Q ss_pred HHHHHHHhhhcCCCCCCHHHHHHHHHHhhhccceeeC
Q psy13885 209 EEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV 245 (246)
Q Consensus 209 ~~va~lWg~~k~~~~m~y~klsR~lR~yy~~~il~kv 245 (246)
..|++.- .+..+.++..++.|.|...-+.|+|.++
T Consensus 37 ~el~~~l--~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 37 EDLYKRL--IDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHH--HHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH--HHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 4444433 2345689999999999999999999875
No 41
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=21.25 E-value=1.3e+02 Score=29.13 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCchhhHHHHHHhcCCCCCCCceeeecCcc-eEEE-----------eChHHHHHHHhhhcCC--
Q psy13885 156 KQNCWPYDTPPPATPRRGSLQLWQFLVALLDDPNNASCIVWTGRGM-EFKL-----------VEPEEVARRWGVQKNR-- 221 (246)
Q Consensus 156 s~~~~p~~~~~~~~~~~g~~~Lw~FLl~lL~d~~~~~~I~Wt~~~~-eF~~-----------~d~~~va~lWg~~k~~-- 221 (246)
...++.-.+...+....++.+|-.+|+..|....+. -+.|.++.. .|+| .+..+|=+.|.+++++
T Consensus 407 ~~~~~~~~~~~~~~~~~~k~rlrpWL~~qi~sg~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~d~~IFkaWA~~tGk~~ 485 (540)
T 2o61_A 407 SGSLSSDSSLSSPSALSPKPRILPWLVSQLDLGQLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYV 485 (540)
T ss_dssp SSSSCCCC--------------CHHHHHHHHHCCST-TCEESCTTSSCEEEECCCTTCTTCCTGGGHHHHHHHHTTTSCC
T ss_pred cCCCCCcccccccccCCCccchHHHHHHHhccCCcC-cceEECCCCCEEEecCccCCcCCcchhhhHHHHHHHHHhCCCc
Q ss_pred ---CCCCHHHHHHHHHH
Q psy13885 222 ---PAMNYDKLSRSLRY 235 (246)
Q Consensus 222 ---~~m~y~klsR~lR~ 235 (246)
.+.++-+.-+.||.
T Consensus 486 ~g~d~~dp~~WKtnfRc 502 (540)
T 2o61_A 486 PGRDKPDLPTWKRNFRS 502 (540)
T ss_dssp SSSSCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
No 42
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.07 E-value=68 Score=24.16 Aligned_cols=27 Identities=11% Similarity=0.317 Sum_probs=24.4
Q ss_pred cCCCCCCHHHHHHHHHHhhhccceeeC
Q psy13885 219 KNRPAMNYDKLSRSLRYYYEKGIMQKV 245 (246)
Q Consensus 219 k~~~~m~y~klsR~lR~yy~~~il~kv 245 (246)
+..|+|+.-++-|+|...-+.|+|.++
T Consensus 38 ~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 38 RRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 456789999999999999999999986
No 43
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=20.97 E-value=7.5 Score=32.92 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=7.6
Q ss_pred Hhhhhccchhhh
Q psy13885 21 RIFLQTLDEKEE 32 (246)
Q Consensus 21 ~~~~~~l~~~~~ 32 (246)
..|.+||.+-++
T Consensus 145 ~pFI~WL~EAEE 156 (208)
T 2iu1_A 145 EPFIKWLKEAEE 156 (208)
T ss_dssp HHHHHHHHCSSC
T ss_pred HHHHHHHHcccc
Confidence 456778776543
No 44
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.58 E-value=63 Score=24.76 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=24.5
Q ss_pred cCCCCCCHHHHHHHHHHhhhccceeeC
Q psy13885 219 KNRPAMNYDKLSRSLRYYYEKGIMQKV 245 (246)
Q Consensus 219 k~~~~m~y~klsR~lR~yy~~~il~kv 245 (246)
+..++|+.-++-|+|...-+.|+|.++
T Consensus 41 ~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 41 HKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 456789999999999999999999886
Done!