RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13885
(246 letters)
>gnl|CDD|143944 pfam00178, Ets, Ets-domain.
Length = 85
Score = 123 bits (311), Expect = 2e-36
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 175 LQLWQFLVALLDDPNNASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSL 233
+QLWQFL+ LL D +N I WTGR EFKLV+PEEVAR WG++KN+P MNYDKLSR+L
Sbjct: 2 IQLWQFLLELLTDQDNRDFIRWTGRDKGEFKLVDPEEVARLWGIRKNKPNMNYDKLSRAL 61
Query: 234 RYYYEKGIMQKVA 246
RYYY+KGI++KV
Sbjct: 62 RYYYKKGIIRKVK 74
Score = 95.1 bits (237), Expect = 2e-25
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFC 120
+EVAR WG++KN+P MNYDKLSR+LRYYY+KGI++KV G+R VYKF
Sbjct: 37 EEVARLWGIRKNKPNMNYDKLSRALRYYYKKGIIRKVKGKRLVYKFV 83
>gnl|CDD|197710 smart00413, ETS, erythroblast transformation specific domain.
variation of the helix-turn-helix motif.
Length = 87
Score = 123 bits (312), Expect = 2e-36
Identities = 47/73 (64%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 174 SLQLWQFLVALLDDPNNASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRS 232
+QLWQFL+ LL DP N+ I WT R EFKLV+PEEVAR WG +KN+P MNY+KLSR+
Sbjct: 1 GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRA 60
Query: 233 LRYYYEKGIMQKV 245
LRYYY+K I++KV
Sbjct: 61 LRYYYKKNILEKV 73
Score = 93.9 bits (234), Expect = 6e-25
Identities = 31/47 (65%), Positives = 40/47 (85%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFC 120
+EVAR WG +KN+P MNY+KLSR+LRYYY+K I++KV G+R VYKF
Sbjct: 37 EEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLVYKFV 83
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 58.1 bits (140), Expect = 9e-10
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 16/104 (15%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKE---------------- 45
E E +K + ++ + DE E+E E + E K+
Sbjct: 804 EGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDS 863
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAM 89
EEE+EEE+EEEEEE+EEEEEEEEEEE E+ ++ W + + A+
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAI 907
Score = 38.4 bits (89), Expect = 0.003
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E + +G E E I +T +E EE E+E E E E K E E E +++E E E E
Sbjct: 716 EHEGETEAEGTEDEGEI------ETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGE 769
Query: 62 EEEEEEEEEEE 72
E E +E+E+E
Sbjct: 770 TEAEGKEDEDE 780
Score = 38.1 bits (88), Expect = 0.003
Identities = 31/81 (38%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE-EEEEEK 60
E + E R+ E+ E I + D K E E EE E E + E E E+E E E EE
Sbjct: 679 NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEG 738
Query: 61 EEEEEEEEEEEEEKEVARRWG 81
EE E+E E E E K G
Sbjct: 739 EEVEDEGEGEAEGKHEVETEG 759
Score = 37.7 bits (87), Expect = 0.006
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTL-DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E K KG + +E + E E E E EE EE ++E E E E + E E +
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Query: 62 EEEEEEEEEEEEKEV 76
+ +E E E E E E
Sbjct: 760 DRKETEHEGETEAEG 774
Score = 36.9 bits (85), Expect = 0.008
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
E E+E E E + E + E E E K E+E E E E +E + + E +
Sbjct: 665 GEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHE 718
Score = 36.1 bits (83), Expect = 0.014
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ K E E E E E+K E+E E E E +E + + E E EE E E
Sbjct: 674 ETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEG 719
Score = 35.7 bits (82), Expect = 0.019
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 2 EEEKVEKDKGREK-ERAIELRIFLQTLDEKEEEEEE-----EEEEEEKKEEEEKEEEKEE 55
E+E + KG + E I + E E E +E E E EE + E E E E E
Sbjct: 668 EQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTE 727
Query: 56 EEEEKEEEEEEEEEEEEEK 74
+E E E EE EE E+E +
Sbjct: 728 DEGEIETGEEGEEVEDEGE 746
Score = 35.7 bits (82), Expect = 0.022
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
DE E E E + E E + + +E E E E E E KE+E+E E + E+ E+
Sbjct: 743 DEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEM 791
Score = 35.0 bits (80), Expect = 0.033
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE E ++ E E E + E++ E+E E E E K+ + + E E EE E E E
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720
Query: 62 EEEEEEEEEEE 72
E E E+E E
Sbjct: 721 TEAEGTEDEGE 731
Score = 34.2 bits (78), Expect = 0.069
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 8 KDKGREKERAIELRIFLQTL-DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
++ E E E + ++T D KE E E E E E K++E+E E + E+ E K +E E
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
Query: 67 EEEEEEEKEVA 77
+ E E + A
Sbjct: 799 GKVEHEGETEA 809
Score = 33.8 bits (77), Expect = 0.089
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+ +E E E E E E ++E E E +E EE E E E E E + E E E R+
Sbjct: 711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKET 764
Score = 33.0 bits (75), Expect = 0.14
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
E E EE E + E E EE E E++ E E + E E E + A R G Q+
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQE 694
Score = 32.7 bits (74), Expect = 0.20
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEE-EEEEKKEEEEKEEEKEEEEEEKE 61
E ++E + K + + E E E+E E E E+ EE E E E E E + +
Sbjct: 696 EGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV 755
Query: 62 EEEEEEEEEEEEKEVA 77
E E + +E E E E
Sbjct: 756 ETEGDRKETEHEGETE 771
Score = 32.3 bits (73), Expect = 0.27
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
K + E E E EE E+ E E E E+ E E+E E E K
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETK 676
Score = 31.9 bits (72), Expect = 0.34
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E KVE + E E +T + E ++E E+E E + + ++ E+ +
Sbjct: 797 AEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGG 856
Query: 62 EEEEEEEEEEEEKE 75
+ + EEEEE+E
Sbjct: 857 GSDGGDSEEEEEEE 870
Score = 30.0 bits (67), Expect = 1.5
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 32/79 (40%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE--------------------------- 61
K E E E E E+ + E + E + ++ E + E
Sbjct: 799 GKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGS 858
Query: 62 -----EEEEEEEEEEEEKE 75
EEEEEEEEEEEE+E
Sbjct: 859 DGGDSEEEEEEEEEEEEEE 877
Score = 29.6 bits (66), Expect = 2.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D E E E EE + E E E EE + E+E E E + E +
Sbjct: 634 DVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENES 681
Score = 29.2 bits (65), Expect = 2.3
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E E E EE E+ E E E +E E ++E E E + E E +
Sbjct: 636 AEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESE 682
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 52.2 bits (126), Expect = 8e-08
Identities = 29/74 (39%), Positives = 51/74 (68%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E + K K+ + + +E+++E++++ +KKEEEE+EE++++EEE++E
Sbjct: 398 EIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Query: 62 EEEEEEEEEEEEKE 75
EEEE EEE+EEE+E
Sbjct: 458 EEEEAEEEKEEEEE 471
Score = 51.5 bits (124), Expect = 1e-07
Identities = 26/49 (53%), Positives = 41/49 (83%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EK+ EEE++E++++ ++KEEE+EEE+E+KEEE+EEEEEE EE++
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 44.9 bits (107), Expect = 2e-05
Identities = 18/52 (34%), Positives = 38/52 (73%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+K ++ E+ E++ ++E++EK+++ ++++EEEEEE+E++EEEKE
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460
Score = 44.9 bits (107), Expect = 2e-05
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 10/67 (14%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ EK +++ +EK++ +++EEEEEEE++K+EEEKEEE+EE EEEK
Sbjct: 417 EKAEKKREEEKKEKKKKAF----------AGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Query: 61 EEEEEEE 67
EEEEE++
Sbjct: 467 EEEEEKK 473
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/50 (26%), Positives = 36/50 (72%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
K+ ++ ++ E+ +++ E+E+++++++ +++EEEEEEE+EK+ +
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 48.4 bits (115), Expect = 1e-06
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E+ EEEEEEEEEE++EE+E EEE+ E+EEE+EE E + EEE +
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 48.0 bits (114), Expect = 2e-06
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ +EEE EEEEEEE++EEEE++E +EEE E++EEEEE E + E+E+
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 48.0 bits (114), Expect = 2e-06
Identities = 28/46 (60%), Positives = 36/46 (78%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E EEEEEEEEEEE++E+E +EEE E+EEEE+E E + EEE E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 47.6 bits (113), Expect = 2e-06
Identities = 29/51 (56%), Positives = 39/51 (76%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q +E+E EEEEEEEEE++EEE++ EE+E E+EE+EEE E + EEE E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 46.4 bits (110), Expect = 7e-06
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E EEEE +EEEE+EEE+EEEE+E EEEE E+EEEEEE E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEAD 479
Score = 44.9 bits (106), Expect = 2e-05
Identities = 28/48 (58%), Positives = 36/48 (75%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E+EEEEEEEEEEE++ EEEE E+E+EEEE E + EEE E E +
Sbjct: 446 EEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493
Score = 44.5 bits (105), Expect = 2e-05
Identities = 29/50 (58%), Positives = 34/50 (68%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+EEEEEEEEEEEE++E EE+E E EEEEEE E + EEE E E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 40.7 bits (95), Expect = 4e-04
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E + E+ E+E E Q +E+E E+EEEEEE E E+E E E +
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496
Query: 62 EEEEEEEEE--EEEKEVARRWGVQKNR 86
EE EE+ E E ++R Q+ R
Sbjct: 497 EEPEEDAERRNSEMAGISRMSEGQQPR 523
Score = 39.9 bits (93), Expect = 9e-04
Identities = 25/78 (32%), Positives = 39/78 (50%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
M ++ E+++ E+E E + + +EEE E+EEEEEE + + EEE E E
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493
Query: 61 EEEEEEEEEEEEEKEVAR 78
+ EE EE+ E
Sbjct: 494 GDGEEPEEDAERRNSEMA 511
Score = 30.3 bits (68), Expect = 0.95
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE------EEEEEKKEEEEKEEEKEE 55
EEE VE+++ E+E E + + E EEEEEE EEE E E + + E+ E
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPE 500
Query: 56 EEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
E+ E+ E E + R VQ P
Sbjct: 501 EDAERRNSEMAGISRMSEGQQPRGSSVQPESP 532
Score = 28.3 bits (63), Expect = 4.4
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 40/96 (41%)
Query: 35 EEEEEEEEKK----------------------------------------EEEEKEEEKE 54
+++ EEEE++ EEE+EEE+E
Sbjct: 395 QDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEE 454
Query: 55 EEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
EEEEE+E EEEE E+EEEE+EV G ++ +
Sbjct: 455 EEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSS 490
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 48.2 bits (115), Expect = 2e-06
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEE---EEEEEEEEEKKEEEEKEEEKEEEEEE 59
EE+ K+ ++ I I+L E E+E EEEEEE+EEKKEEEEK +KEEE +E
Sbjct: 4 EERRIKELVKKHSEFINYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDE 63
Query: 60 KEEEEEEEEEEEEEKEVARRW 80
+EE+EE++++ ++ KE W
Sbjct: 64 EEEKEEKKKKTKKVKETTTEW 84
Score = 40.5 bits (95), Expect = 5e-04
Identities = 26/64 (40%), Positives = 45/64 (70%), Gaps = 5/64 (7%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
EKE E+ +E+EEE+EE++EEEEK ++E+E ++EEE+EEK+++ ++ +E
Sbjct: 28 EKEVEKEV-----PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Query: 73 EKEV 76
E E+
Sbjct: 83 EWEL 86
Score = 38.6 bits (90), Expect = 0.002
Identities = 19/49 (38%), Positives = 39/49 (79%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+E+EE+EE++EEEE+ ++EE+ +E+EE+EE+K++ ++ +E E + +
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Score = 34.4 bits (79), Expect = 0.046
Identities = 19/52 (36%), Positives = 36/52 (69%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+EK+EEEE+ ++EE+ +EEE++EEK+++ ++ +E E E + K + R
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTR 96
Score = 28.6 bits (64), Expect = 3.5
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+E+EE EEE+E+ E E E +E+ E+ K EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.6 bits (64), Expect = 3.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
DE+ EEE+EE E E + EE E+ + EE
Sbjct: 498 DEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.6 bits (64), Expect = 3.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+E+E+ EEE++E E E E +E+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.6 bits (64), Expect = 3.8
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EEE+ EK++ +E+E +E +EEEE+EE++++ K+ +E E E + K
Sbjct: 37 DEEEEEEKEEKKEEEEKTT-----DKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 28.2 bits (63), Expect = 5.0
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E+EE EEE EE E E E EE+ E+ + +EV
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 45.9 bits (109), Expect = 5e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E +K + + E E E ++KE++ + E+E+EE +EE E+E+E+ +E EKE
Sbjct: 50 EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Query: 62 EEEEEEEEEEEEKE 75
EE+ E E+E
Sbjct: 110 TEEKTESNVEKEIT 123
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+E ++ +++E + EE KEEEKE E +E++ + E+E+EE E
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESE 92
Score = 37.0 bits (86), Expect = 0.004
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEE---KEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ K+ +++E E EE KEEE+ E+KE++ + ++E+EE EEE EEE E
Sbjct: 47 DEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 32.4 bits (74), Expect = 0.12
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+F + + +E+E ++ +E + EE +EEE+E E++E++ + EKE
Sbjct: 34 LFFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKE 87
Score = 31.2 bits (71), Expect = 0.33
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L D+ +E+E ++ ++++ E +E ++EE+E E++E++ + E+E E
Sbjct: 34 LFFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDE 89
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 46.3 bits (110), Expect = 5e-06
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE---EEEEK 60
+ E D+ E + EL + + + E EE E E+ + EE +E E+E
Sbjct: 372 DSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEF 431
Query: 61 EEEEEEEEEEEEEKEVAR 78
E+E+E EE + EE+E AR
Sbjct: 432 EDEDELEEAQPEEEEEAR 449
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
+ E + EEEE + + EE + E+ E EE+ E E+E ++
Sbjct: 383 AKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Score = 38.2 bits (89), Expect = 0.002
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ + ++E L+ + E E+ E EE+ ++ E+E E+E+E +E
Sbjct: 380 AEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEE 439
Query: 62 EEEEEEEEEE 71
+ EEEEE
Sbjct: 440 AQPEEEEEAR 449
Score = 36.3 bits (84), Expect = 0.012
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+D K+ E ++E E+ K E + E+EE + + EE E E+ E +E AR
Sbjct: 368 IDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDAR 419
Score = 27.4 bits (61), Expect = 7.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E +E E+ + + + E+EE + E EE E E A R
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAER 413
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 46.5 bits (111), Expect = 6e-06
Identities = 19/66 (28%), Positives = 45/66 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+E ++E+EE++++ EEEE++ + +EEE++E+E+ ++E++EEE+E + +K+
Sbjct: 326 EEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAE 385
Query: 88 AMNYDK 93
+ +
Sbjct: 386 STRSEL 391
Score = 46.1 bits (110), Expect = 9e-06
Identities = 19/51 (37%), Positives = 44/51 (86%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+D+++EE+++++ EEE+++ + +EE++EE+E+ ++E++EEEEEEE+++
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKK 380
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/51 (35%), Positives = 40/51 (78%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++ ++E+EE+++++ +EEEE + +EEE+E++E+ ++E++EEEE+E
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375
Score = 45.0 bits (107), Expect = 2e-05
Identities = 20/71 (28%), Positives = 43/71 (60%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ D E + + DE+EEE+ ++E+EE +++ +EEE++ + ++EE+EE+
Sbjct: 301 DLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Query: 67 EEEEEEEKEVA 77
E+ ++E+ E
Sbjct: 361 EDSDDEDDEEE 371
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/51 (33%), Positives = 39/51 (76%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E+EE+++++ E++EE+ ++EE+EE+++ ++E++EEEEEE++
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 42.7 bits (101), Expect = 1e-04
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EE+ E++ +E ++ D + EE+EEEE+ ++++EE ++++ E+
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEE 344
Query: 61 EEEEEEEEEEEEEKE 75
EEE+ + +EEE++E
Sbjct: 345 EEEDVDLSDEEEDEE 359
Score = 37.3 bits (87), Expect = 0.006
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE---------EE 52
E K E ++ ++ E LR ++ EEEE+ +E ++ +E E + E
Sbjct: 262 ELAKEEAERLKKLEAE-RLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGE 320
Query: 53 KEEEEEEKEEEEEEEEEEEEEKEVAR 78
++EEEEE ++E+EE+++++ E
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEE 346
Score = 36.9 bits (86), Expect = 0.008
Identities = 18/51 (35%), Positives = 38/51 (74%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
L+E+EE+ + +EEE++++E+ +E+ EEEEEE++E+++++ E E+
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELP 392
Score = 34.6 bits (80), Expect = 0.050
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K EEE +EE E K+ E + + EEE +EEEE+ +E ++ +
Sbjct: 258 KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLD 303
Score = 33.8 bits (78), Expect = 0.088
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 33 EEEEEEEEEEKKEEEEKE-------EEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
EEE +EE E+ ++ E E EE+++EEEE +E ++ ++E E + +G+ +
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG 319
Score = 28.0 bits (63), Expect = 5.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEE--------EEEEEEEEEEKEVA 77
+ K EEE +E+ E ++ E E EE++EEEE+ KE A
Sbjct: 255 DRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESA 299
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 45.1 bits (107), Expect = 9e-06
Identities = 20/64 (31%), Positives = 44/64 (68%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K ++ G E ++ L L++K +E E E+ +EE +++EE+EEE+EEE+E+ ++++
Sbjct: 134 KFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Query: 65 EEEE 68
++++
Sbjct: 194 DDDD 197
Score = 44.0 bits (104), Expect = 2e-05
Identities = 18/48 (37%), Positives = 37/48 (77%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
DEK E++ +E E ++ +E++E+ EEEEEE+EEE+E+ ++++++ +
Sbjct: 150 DEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 43.2 bits (102), Expect = 3e-05
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
++ + + L F + + EEEE+ +E+ E++ KE E E+ +EE E++EEEEE
Sbjct: 121 GINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Query: 69 EEEEEKE 75
EEEEE E
Sbjct: 181 EEEEEDE 187
Score = 42.8 bits (101), Expect = 5e-05
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+EE+ +E+ EKK +E + E+ +EE+E+ EEEEEEEEEE+E+
Sbjct: 141 LFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDED 188
Score = 42.0 bits (99), Expect = 9e-05
Identities = 17/49 (34%), Positives = 35/49 (71%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
D E+ E++ +E + E+ EE++++EEEE+EEEEE+E+ ++++ +
Sbjct: 148 DIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 40.9 bits (96), Expect = 2e-04
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E+E+ +E+ E+K +E E E+ EE+E+++EEEEEEEEE+E+ +
Sbjct: 144 EEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDD 191
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E +E+ E++ K+ E E +E++E++EE+EEEEEEE+E+ ++ +
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 39.0 bits (91), Expect = 0.001
Identities = 20/55 (36%), Positives = 41/55 (74%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ L T +E++ +E+ E++ KE E ++ ++E+E++E+EEEEEEEE+E+ + +
Sbjct: 138 KVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDD 192
Score = 38.6 bits (90), Expect = 0.001
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EEEE+ +EK EK+ ++ E E+ EE+E++EEEEEEE+E
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 29.7 bits (67), Expect = 1.0
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
EE+ + D+ + + +DE++E++EEEEEEEE+++E+ +++ +++
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 44.9 bits (107), Expect = 9e-06
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+D E + +EE E+ ++++E+++E++EEE + + E AR
Sbjct: 30 IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARE 82
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 46.2 bits (110), Expect = 9e-06
Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+ + RE+E +E+ +T K+E+E EE+ EE+++ +K E+ ++ E +E++
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Query: 68 EEEEEEKEVARRWGVQKNRPAM--NYDKLSRSLRY 100
+EE + +K P + +Y + +R RY
Sbjct: 291 DEE--------LFWFEKPWPTLLFDYKRWNRPFRY 317
Score = 35.7 bits (83), Expect = 0.020
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E E ++ EEE + E E E K ++E+E EE+ +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLF 267
Score = 34.6 bits (80), Expect = 0.039
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+IF +++K+E + + EE+ K+EE+KE+ K EE+E
Sbjct: 641 QIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 30.4 bits (69), Expect = 1.00
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK-EVARRW 80
+K++E K + EE+ +KEE++E+ + EE+E+ E+A W
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKERIEIAETW 686
Score = 29.6 bits (67), Expect = 1.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K +E + EE+EEE + + E E + ++E+E
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQE 257
Score = 29.6 bits (67), Expect = 1.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
KK +E E E+ EEE + E E E + ++++
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQ 256
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 45.3 bits (108), Expect = 1e-05
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+K R E L K EEE +EE +EKKEE++KEE + + + EE+ + EE+E
Sbjct: 262 DKTREEEEEKIL-----KAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKER 316
Query: 73 EKEVARR 79
+K+ AR+
Sbjct: 317 KKQ-ARK 322
Score = 38.0 bits (89), Expect = 0.003
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EEEEE+ K EEE++EE +E++EEK++EE E + + E R+
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKL 311
Score = 29.5 bits (67), Expect = 1.7
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE 55
EEEK+ K E++ + + + +E+E + + EE++K EEKE +K+
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK-LEEKERKKQA 320
Score = 29.1 bits (66), Expect = 2.1
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E + +K E+EEE+ K EEE +EE +E+KE ++
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKK 293
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 43.0 bits (102), Expect = 2e-05
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+R L +++EEEEEEE E E+ +EEE+ +E E+E K + E+ E E ++KE+ +
Sbjct: 90 VRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 36.9 bits (86), Expect = 0.003
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ +++E+EEEEE++ E E+ +E+E+ +E E+E + + E+ +
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRE 138
Score = 35.7 bits (83), Expect = 0.007
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K R+K R + + +E+EEE E EE +EE++ +E E+E + + EK E E +++
Sbjct: 85 KWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQK 144
Query: 70 EE 71
E
Sbjct: 145 EI 146
Score = 26.5 bits (59), Expect = 9.2
Identities = 17/62 (27%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ +K EK++ E+E +E + +E++ +E E+E + K E+ +E E++++E K
Sbjct: 94 LGLDKKEKEEEEEEEVEVE-----ELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Query: 61 EE 62
E+
Sbjct: 149 EQ 150
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+DE E+EEEE+ +E ++EE E EE+ + E E + + + A +
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Score = 44.0 bits (104), Expect = 3e-05
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
R L +D +E +E+E+EEEE++ +E E+EE ++ EEE + E+ E +
Sbjct: 358 RRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGS 414
Score = 44.0 bits (104), Expect = 4e-05
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ R+ +E +E+E+EEEE+ + EEE+ E+ EEE + E+ E +
Sbjct: 353 KMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412
Query: 73 EKE 75
+
Sbjct: 413 GSD 415
Score = 43.6 bits (103), Expect = 5e-05
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
+ EE +E+E+EEEE++ +E +EEE E+ EEE + E+ E + A
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Query: 89 MN 90
+
Sbjct: 426 SD 427
Score = 43.2 bits (102), Expect = 6e-05
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
+ + EE +E+E +EEE++ +E EEEE E EEE + E+ E + G A
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Score = 38.9 bits (91), Expect = 0.002
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E+ E Q DE EEEE E+ EEE + E+ E + E + ++E
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Query: 71 EEEKE 75
+
Sbjct: 426 SDSDS 430
Score = 35.9 bits (83), Expect = 0.016
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E++ E+++ R E +EEE E+ EEE + E+ E + +
Sbjct: 370 VDEDEDEEEEQRSDE-------------HEEEEGEDSEEEGSQSREDGSSESSSDVGSDS 416
Query: 61 EEEEEEEEEEEEEKE 75
E + ++E + + E
Sbjct: 417 ESKADKESASDSDSE 431
Score = 35.5 bits (82), Expect = 0.019
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E+E+ +E EEEE + EEE + +E+ E + + E + +KE A
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 42.8 bits (101), Expect = 3e-05
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE-----EEEEEEEEEEK 74
+IF + +EEEE EEE ++ E+E+ E K E +E+K+ E E+E+ + E K
Sbjct: 86 KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 38.6 bits (90), Expect = 7e-04
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+E +E E+E+ + + E KE++K E + K E+E+ + E ++ K
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E EEE +E E+E+ E + + +EK++ E K + E+E+ + E +K
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 35.9 bits (83), Expect = 0.007
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
++EEEE EE+ +E ++E+ E + E +E+++ E + + ++ +
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
Score = 30.9 bits (70), Expect = 0.30
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E +++EEE EEE ++ E+E+ E + E KE
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKE 123
Score = 29.7 bits (67), Expect = 0.73
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
++E+EE +EE +E E+E+ E + E +++ R
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKR 127
Score = 28.2 bits (63), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+ EEEE E+E +E E+E+ E + + ++ P
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVP 130
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 44.1 bits (105), Expect = 3e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
L +K+ +EE +E + + EE+EEEEEE+EEEE EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 42.9 bits (102), Expect = 6e-05
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+++ +EE ++ + + EEEEE+EEEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 42.5 bits (101), Expect = 9e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+++ +EE +E + + EEEEEE+EEEEEEE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 40.2 bits (95), Expect = 5e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+++ +EE KE + + EEE+EEEEEEEEEE E+E A
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAA 322
Score = 37.5 bits (88), Expect = 0.003
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE 52
+ EL+ L + EEEEEEEEE++EEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 37.5 bits (88), Expect = 0.003
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
L+ + + + EEEEE++EEEE+EE EEE
Sbjct: 288 LKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 34.8 bits (81), Expect = 0.026
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ KE + + ++EEEE+EEE+EEE E+E
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 27.5 bits (62), Expect = 7.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ EE KE + + EEEEEEEE+E
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEE 311
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 44.5 bits (105), Expect = 3e-05
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q L E EEE+E++ EE + E+E + E E E E + E+ EE+E+E++ E
Sbjct: 641 HQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 41.0 bits (96), Expect = 4e-04
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E EEE+E++ EE ++E++ E E+ E E E + E+ EE+E+E + GV A
Sbjct: 646 EGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 39.9 bits (93), Expect = 0.001
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ + E EEE+E++ E+ +++E E E E+ E + E + E+ EE+E+++
Sbjct: 630 DVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQED 689
Score = 37.2 bits (86), Expect = 0.006
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
D+ EE +++E+E E ++ E + E E+ EE E+E++ E E
Sbjct: 653 DDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 36.4 bits (84), Expect = 0.013
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
L+E +++E+E E E+ + E E + E EE+E++++ E E +K V R
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRR 706
Score = 36.4 bits (84), Expect = 0.013
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L++ L L E + ++ E ++E+E+ EE +++E+E E E+ E E E + E
Sbjct: 624 GLQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGE 680
Score = 34.8 bits (80), Expect = 0.036
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E K + E E E +T D+++E E E+ E E + + E EE E+E++ +
Sbjct: 634 ADENKSRHQQLFEGEEEDE-DDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Query: 61 EEEEEEEEEEEEEKEV 76
E ++ + +
Sbjct: 693 ANEGVVPIDKAVRRAL 708
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ + E+ E E E + ++ EE E+E + E E ++ K
Sbjct: 664 ECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPK 710
Score = 29.1 bits (65), Expect = 2.4
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE------------------EEE 65
+ +++ E E E + E+ E+ E+E+ E E + + E
Sbjct: 665 CEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSE 724
Query: 66 EEEEEEEEK 74
+EE ++E+
Sbjct: 725 DEEGMDDEQ 733
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 43.9 bits (104), Expect = 4e-05
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+K RE E + L+ L +L + + E E E EEE++E EE EEE EE+ +++ + E
Sbjct: 120 EKLREDEAKLSLKSGLASLPKPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAE 179
Query: 69 EEEEEKEVARR 79
E +E++E+ RR
Sbjct: 180 EAKEQEELRRR 190
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 43.5 bits (103), Expect = 4e-05
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+E ++K G K + E + + EE+ EE E+ E++EEE+ E E+E+EE E+
Sbjct: 253 KEVIKKKGGDFKVK-GEPEV----VGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDED 307
Query: 63 EEEEEEEEEEEK 74
EEEEE+++E +K
Sbjct: 308 EEEEEDDDEGDK 319
Score = 37.7 bits (88), Expect = 0.004
Identities = 18/40 (45%), Positives = 32/40 (80%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+EE+ E+ E+ +EEE+E++ E E+E+EE+E+EEEE++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEED 313
Score = 35.4 bits (82), Expect = 0.017
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+EE+ +E EK EE+EEE++ E E+E+EE+E+EE+E
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 42.7 bits (100), Expect = 5e-05
Identities = 24/74 (32%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ +E++EK R++ +E R+ + +EK +E E++EE+E ++EE+ EE+ ++ E E
Sbjct: 123 IRQEQIEK--ARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEI 180
Query: 61 EEEEEEEEEEEEEK 74
E++E E E +++K
Sbjct: 181 IEQDESETESDDDK 194
Score = 38.9 bits (90), Expect = 9e-04
Identities = 23/71 (32%), Positives = 46/71 (64%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
V+KD ++K+ I + ++ ++ EE EE E E ++E+ ++ E++EE+E E+EE+
Sbjct: 110 VKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTI 169
Query: 66 EEEEEEEEKEV 76
EE+ ++ E E+
Sbjct: 170 EEQSDDSEHEI 180
Score = 31.2 bits (70), Expect = 0.36
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+E+ E+ ++E E+ EE+ E E +E+ +E E++EE+E+E +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 43.1 bits (102), Expect = 6e-05
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E + E+EEE+++ ++ KE+ EE EE EEE EEEE E EKE
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 41.9 bits (99), Expect = 1e-04
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ K E+ K +E E Q L+ ++++EEEE E E+ E+ + E E + E +KE
Sbjct: 76 EKWKEEERKKKEAE---------QGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKE 126
Query: 62 EEEEEEEEEEEEKEVARRWGVQK 84
E + E+EEE+ E A++
Sbjct: 127 IESSDSEDEEEKDEAAKKAKEDS 149
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D++ E + E+EEE+ + ++ +E+ +EE E++EEE EEEE E ++
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 41.2 bits (97), Expect = 3e-04
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E + E+EEE++E K+ +E +E+ EE+E+E EEEE E E+EK
Sbjct: 127 IESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+KE E + E+EEEK E +K +E +EE +E+EEE EEEE E E +
Sbjct: 123 SDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 40.0 bits (94), Expect = 6e-04
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+EEE++E +K +E+ EE EE+EEE EEEE E E+E+ E+A
Sbjct: 129 SSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELA 178
Score = 40.0 bits (94), Expect = 7e-04
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ +E E + E+EE+K+E K+ +++ +EE EE+EEE EEEE +
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEA 169
Score = 39.6 bits (93), Expect = 7e-04
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E ++E E + E+E++++E ++ KE+ +EE EE+EEE EEEE E
Sbjct: 121 VESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAE 168
Score = 38.5 bits (90), Expect = 0.002
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ + + E+EEE++E ++ +++ ++E EE++EE EEEE E E+++ +
Sbjct: 126 EIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKAS 175
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D + ++E E + E+++E++E ++ +E+ +E+ EE+EEE EEE+ A +
Sbjct: 120 DVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 34.6 bits (80), Expect = 0.034
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + E ++E E + ++EEEK+E ++ +E+ +EE EE+EEE +E
Sbjct: 117 EWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEE 164
Score = 34.2 bits (79), Expect = 0.043
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D++ E + E ++E + + E EEEK+E ++ +E+ +EE EE+E+E
Sbjct: 113 DDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEE 160
Score = 33.9 bits (78), Expect = 0.052
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
L+ E+E +++E E+ E +++++EEE E EE+E ++E E + E +KE+
Sbjct: 75 LEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEI 127
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 43.0 bits (102), Expect = 8e-05
Identities = 19/86 (22%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE--------EKEVARR 79
D EEE ++E + + +E++ ++EE ++E+EE + E++E + R
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRE 162
Query: 80 WGVQKNRPAMNYDKLSRSLRYYYEKG 105
+++ R +++ L +YY +G
Sbjct: 163 RSLERRRRRREWEEKRAELEFYYYQG 188
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 41.9 bits (99), Expect = 8e-05
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L K +EEEEE + +E E E++ E +EE +EEE++
Sbjct: 13 LPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDR 59
Score = 38.4 bits (90), Expect = 0.001
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+EEEEE E ++ E E+K +E ++E +EEE++ EE
Sbjct: 19 SPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 36.9 bits (86), Expect = 0.004
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+EEE E +E + EK+ E +EE EEE++ EE K +A
Sbjct: 21 KEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLA 70
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ +EEEE+ E +E E E+K +E +EE +EEE +
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRF 60
Score = 30.7 bits (70), Expect = 0.44
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE----EEKEEEE 57
K E+++ E L+ E +EE +EEE+++ EE + E K E
Sbjct: 18 PSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAE 77
Query: 58 EEKEEEEEEEEEEEEEKEV 76
+ K E E + + +EV
Sbjct: 78 KSKFGEVYEISKPDYVREV 96
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 42.8 bits (101), Expect = 9e-05
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
++K K K E++ ++ L+ D E ++EEEE+EE++EEE+++E +E + EE
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEE 417
Query: 63 EEEEEEEEEEE 73
EE++ E + E
Sbjct: 418 FEEDDVESKYE 428
Score = 41.3 bits (97), Expect = 3e-04
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE-EEEEEEEKEVARRWGVQK 84
LD E E+ E EEEE EEE+EEE+E++ +E ++EE EE +V ++
Sbjct: 373 LDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSD 431
Score = 39.7 bits (93), Expect = 0.001
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
T + EEEE+EEEEEEE ++E +E ++EE E+++ E + E+ + +A
Sbjct: 386 TERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSSLA 437
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 25 QTLDEKEEEEEEEEEEE--EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGV 82
+TL++++ + +E E++ + E+ E +++EEE+EEEEEEE+E E +
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413
Query: 83 QKN 85
Sbjct: 414 DDE 416
Score = 33.6 bits (77), Expect = 0.100
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+E++EEEEEEE+E+E +E ++E+ EE++ + + E+
Sbjct: 388 RDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 31.3 bits (71), Expect = 0.53
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E E A R + DE+EEEEE+E+E K+ +++E E+++ E + E+
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 27.8 bits (62), Expect = 7.0
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
F Q L E +++ + +E +++ E E+ E ++EEEE+EEE+E
Sbjct: 348 FTQALWETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEE 400
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 43.1 bits (101), Expect = 9e-05
Identities = 21/51 (41%), Positives = 38/51 (74%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
D+ E+E+E++++EE+ +EEEE+EEE + ++E EE+E E+ E+ EV +
Sbjct: 155 DDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
Score = 42.7 bits (100), Expect = 1e-04
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
D ++++E+E+E+ +EE+ EEE+EEEEE K ++E+EE+E E + V K
Sbjct: 149 DNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
Score = 40.8 bits (95), Expect = 5e-04
Identities = 19/48 (39%), Positives = 37/48 (77%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+D+ +E+E+E++++EE EEEE+EEE+ + ++++EE+E E+ EK
Sbjct: 153 IDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200
Score = 40.8 bits (95), Expect = 5e-04
Identities = 15/40 (37%), Positives = 30/40 (75%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EE+ ++ +++ E+E+E+ ++EE++EEEEEEE+E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 40.8 bits (95), Expect = 5e-04
Identities = 20/70 (28%), Positives = 45/70 (64%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K + + +E F+ D+++E+E++++EE++++EEEE+EE K ++E++E+E
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Query: 65 EEEEEEEEEK 74
E+ E+ +
Sbjct: 193 GEDFTYEKSE 202
Score = 38.9 bits (90), Expect = 0.002
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
G+ + +++ I + EE+ + ++++++E++++++EE +EEEEEEEEE
Sbjct: 120 GKAEIGDLDMIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 28.9 bits (64), Expect = 3.7
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 20/68 (29%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEK--KEEEEKEEEKEEEEEE 59
E+E + D DE+++EEEEEEEEE K +E+E++E E+ E
Sbjct: 158 EDEDEDDD------------------DEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYE 199
Query: 60 KEEEEEEE 67
K E ++ +
Sbjct: 200 KSEVDKTD 207
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 42.5 bits (100), Expect = 1e-04
Identities = 17/45 (37%), Positives = 34/45 (75%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
K+E + EE E + KEE+ K+EE E++++E+ +E++E+ +++E K
Sbjct: 389 KDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 39.4 bits (92), Expect = 0.001
Identities = 16/68 (23%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 14 KERAIELRIFLQTLDE--KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+R L+ + + L + K+ E ++E + ++ E + +EEK ++EE +++++E+ +E++
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 72 EEKEVARR 79
E+++ R
Sbjct: 425 EKRQKDER 432
Score = 32.8 bits (75), Expect = 0.16
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+K +E +E ++ + ++ E K+E + +E E + +EE+ +++E
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEE 411
Score = 30.9 bits (70), Expect = 0.62
Identities = 13/75 (17%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE--EEEEEEEEEEEKEVARRWG 81
+ + + ++ +E K+ ++ ++ ++ E K+E EE E + +E+++ +
Sbjct: 353 YEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEEN 412
Query: 82 VQKNRPAMNYDKLSR 96
+K + + DK R
Sbjct: 413 EKKQKEQADEDKEKR 427
Score = 27.5 bits (61), Expect = 6.7
Identities = 11/59 (18%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ +V+ + +E + ++E+ ++EE E+++K++ +E +E+++++E +K
Sbjct: 384 KLGEVKDETDASEEAEAKA--------KEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 42.3 bits (100), Expect = 1e-04
Identities = 14/76 (18%), Positives = 48/76 (63%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+K DK + ++ + Q D+ +++++++ ++++ ++++ E++ E+++++
Sbjct: 106 AEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDV 165
Query: 62 EEEEEEEEEEEEKEVA 77
++E+EE++E +E E
Sbjct: 166 DDEDEEKKEAKELEKL 181
Score = 42.3 bits (100), Expect = 1e-04
Identities = 15/52 (28%), Positives = 35/52 (67%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D+ E+++E++++++ E+EEK+E KE E+ +++ +E++ E AR+
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202
Score = 41.9 bits (99), Expect = 2e-04
Identities = 15/74 (20%), Positives = 42/74 (56%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
V + + + + +D+ +++E+++E++++ ++E EE+KE +E EK ++
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Query: 65 EEEEEEEEEKEVAR 78
++ +E++ E R
Sbjct: 185 DDFVWDEDDSEALR 198
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/88 (15%), Positives = 47/88 (53%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+++ + K + + D+ ++++ ++++++E +E++ +++ ++E+EEK+
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAM 89
E +E E+ +++ V + R A
Sbjct: 174 EAKELEKLSDDDDFVWDEDDSEALRQAR 201
Score = 40.4 bits (95), Expect = 5e-04
Identities = 10/74 (13%), Positives = 48/74 (64%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+K EK +K+ + + L++ +++++++++++ ++ + +++ E+++E+ +
Sbjct: 102 SSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDD 161
Query: 62 EEEEEEEEEEEEKE 75
+++ ++E+EE+++
Sbjct: 162 DDDVDDEDEEKKEA 175
Score = 40.4 bits (95), Expect = 6e-04
Identities = 10/74 (13%), Positives = 42/74 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ D K+ + + D+ +++ ++++ +++ +E++ E++ +++ ++++
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
Query: 62 EEEEEEEEEEEEKE 75
EE++E +E E+ +
Sbjct: 170 EEKKEAKELEKLSD 183
Score = 40.0 bits (94), Expect = 8e-04
Identities = 9/74 (12%), Positives = 45/74 (60%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ K + K + + + + +++++++++++ +++ +++ +E+++E +
Sbjct: 101 DSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDD 160
Query: 62 EEEEEEEEEEEEKE 75
++++ ++E+EE+KE
Sbjct: 161 DDDDVDDEDEEKKE 174
Score = 39.6 bits (93), Expect = 0.001
Identities = 10/58 (17%), Positives = 37/58 (63%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
+ ++++E+++E+++ + ++++EEK+E +E ++ ++++ +E+ A R +
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDA 204
Score = 36.1 bits (84), Expect = 0.012
Identities = 11/52 (21%), Positives = 36/52 (69%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D+ E++++++ ++E+++++E KE EK ++++ +E++ E + ++ A+
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKL 206
Score = 30.3 bits (69), Expect = 0.85
Identities = 9/58 (15%), Positives = 29/58 (50%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+++ D + + E D+ ++E+EE++E +E ++ + ++ +E++
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDD 193
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 41.3 bits (97), Expect = 2e-04
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E++ +E E +EE+K +EE+ E E+ E+EE E+ EE E + EE +
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Score = 40.5 bits (95), Expect = 2e-04
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E K K + E++ E + ++E+ E EE E+EE E+ E+ E + EE +
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 61 EEEEEEEEEEEEEKEV 76
E + +EE ++ E E+
Sbjct: 62 ENNKLKEENKKLENEL 77
Score = 38.2 bits (89), Expect = 0.002
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEE--EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
EKE ++ KE E +EE+ +EE+ + EE ++EE E+ EE E + EE +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 70 EEEEK 74
+E K
Sbjct: 61 DENNK 65
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ ++ + E EE+ +E E +EE + +EE+ E EE E+EE E+ E +
Sbjct: 3 KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEES 51
Score = 35.9 bits (83), Expect = 0.009
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
D K E EE+ +E + +EE+K +E++ E EE E+EE E+ EE EV
Sbjct: 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEE-IEKEEIIEDSEESNEVK 55
Score = 32.8 bits (75), Expect = 0.11
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
MEE+ ++++ +E+++ E ++ E EE E+EE E EE + + +E ++E
Sbjct: 13 MEEDCCKENENKEEDKGKE--------EDLEFEEIEKEEIIEDSEESNEVKIEELKDENN 64
Query: 61 EEEEEEEEEEEEEKEVARR 79
+ +EE ++ E E + + R
Sbjct: 65 KLKEENKKLENELEALKDR 83
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 41.6 bits (98), Expect = 2e-04
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
R + L E + +EE+E +E EE E E E EE+ E+ E+A ++
Sbjct: 127 RDINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKSYELAAKY 186
Score = 32.8 bits (75), Expect = 0.16
Identities = 15/74 (20%), Positives = 24/74 (32%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E D+ E ++ E E K +EE++ + EE E +
Sbjct: 99 DSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELESR 158
Query: 61 EEEEEEEEEEEEEK 74
E E EE+
Sbjct: 159 LATEPSPAPELEEQ 172
Score = 31.6 bits (72), Expect = 0.32
Identities = 21/110 (19%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 7 EKDKGREKERAI--------ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
E+D E+ + + I + E+E E++++++K+ ++ + E+ ++
Sbjct: 31 EEDAAEEETKGFNADIPQPKDEGIIGDKMKAYEQEALEQKQKDKKRTLQDLADSFEKSDK 90
Query: 59 EKEEEEEEEEE-EEEEKEVARRWGV--QKNRPAMNYDKLSRSLRYYYEKG 105
E ++ + +EE E A G A Y ++R L +YE
Sbjct: 91 ESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYP 140
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 41.7 bits (98), Expect = 2e-04
Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
E+ K +E+++A EL+ +K+ E+E ++ EK+ +E++K+ EE K+
Sbjct: 77 AEEQRKKKEQQQAEELQ-------QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Query: 65 EEEEEEEEEKEVA 77
++++ EE + A
Sbjct: 130 KQKQAEEAAAKAA 142
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/63 (22%), Positives = 35/63 (55%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
RA E R + +E ++++ E+E K+ E++ +E++++ EE ++ ++++ E
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Query: 76 VAR 78
A
Sbjct: 136 EAA 138
Score = 36.3 bits (84), Expect = 0.011
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE-EEKEEEEEEEEEEEEEKEVARR 79
R Q K EE+ +++E+++ EE ++++ E+E ++ E+E +E++++ E A +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 80 WGVQKNRPA 88
K + A
Sbjct: 126 QAALKQKQA 134
Score = 34.0 bits (78), Expect = 0.054
Identities = 15/76 (19%), Positives = 31/76 (40%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + E+ K EKER Q + ++ ++++ EE + + + E E K
Sbjct: 96 QAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Query: 62 EEEEEEEEEEEEKEVA 77
++ E K+ A
Sbjct: 156 AAAAAKKAAAEAKKKA 171
Score = 32.9 bits (75), Expect = 0.14
Identities = 19/83 (22%), Positives = 31/83 (37%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E + K A R E +++ E E KK E +++ E E K
Sbjct: 136 EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKA 195
Query: 62 EEEEEEEEEEEEKEVARRWGVQK 84
E +++ E E K+ A +K
Sbjct: 196 AAEAKKKAEAEAKKKAAAEAKKK 218
Score = 30.5 bits (69), Expect = 0.80
Identities = 9/41 (21%), Positives = 30/41 (73%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E+ +++++K + EE+++++E+++ EE ++++ E+E+
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQER 102
Score = 29.8 bits (67), Expect = 1.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ E ++ E +KK E E + E ++K E E +++ E K+ A
Sbjct: 171 AEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKA 219
Score = 28.6 bits (64), Expect = 3.2
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E +++ E E K E +++ E E ++K E +++ E K A
Sbjct: 180 AAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA 227
Score = 27.5 bits (61), Expect = 7.8
Identities = 9/49 (18%), Positives = 34/49 (69%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
++ ++++++ K+ EE+++++++++ EE ++++ E+E ++ E R
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKER 110
Score = 27.5 bits (61), Expect = 7.9
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE ++ ++K+ K E E + KK E + K+ E E ++
Sbjct: 121 EEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAK--KKAEAEAAKK 178
Query: 63 EEEEEEEEEEEKEVAR 78
E +++ E + A+
Sbjct: 179 AAAEAKKKAEAEAAAK 194
Score = 27.1 bits (60), Expect = 8.9
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ E E ++ E ++K E E + E +++ E E +++ E +K+ A
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 41.9 bits (98), Expect = 2e-04
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEE-EEEEKKEEEEKEEEKEEEEEEK 60
EE EKD+ + E +E TLDE ++++ + E+++K E+ EE +E EE
Sbjct: 4021 EEADAEKDEPMQDEDPLEEN---NTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEES 4077
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
E+ + +EE E+ EV + N P M+
Sbjct: 4078 TEDGVKSDEELEQGEVPEDQAID-NHPKMD 4106
Score = 34.6 bits (79), Expect = 0.048
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
D E E++ E+ E + +E + + E ++ +E+E+EEE +V
Sbjct: 3915 DLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDV 3963
Score = 34.2 bits (78), Expect = 0.076
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E V KD E + ++ DE +EE + E++E + E+ +E +E+ +++
Sbjct: 3998 KEGDVSKDSDLED-------MDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQD 4050
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAMNYD 92
+ + E++E+ E VQ+N +
Sbjct: 4051 DFSDLAEDDEKMNEDGFEENVQENEESTEDG 4081
Score = 33.8 bits (77), Expect = 0.082
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE---------EEEEEEEEKEV 76
D +E+E+EEE ++ ++E + + +E + E E+ +E+E + K+
Sbjct: 3949 DRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDS 4006
Score = 33.0 bits (75), Expect = 0.14
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEE---EEEEKKEEEEKEEEKEEEEE 58
+E+ +E++ +++ + L DEK E+ EE E EE E+ K +E+ E+ E
Sbjct: 4033 DEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGE 4092
Query: 59 EKEEEEEEEEEEEEEKEVARRWGVQKN 85
E++ + + + K +
Sbjct: 4093 VPEDQAIDNHPKMDAKSTFASAEADEE 4119
Score = 33.0 bits (75), Expect = 0.15
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E + +E++ K E++ +EKE+EEE ++ ++E + + +E
Sbjct: 3929 ANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 32.7 bits (74), Expect = 0.18
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEE----KEEEEEEKEEEEEEEEEEEEEKE 75
DE EE+ E E++ ++ E KE++ + E+++ +E+E+EEE
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMS 3960
Score = 32.7 bits (74), Expect = 0.22
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE------------EEKEEEEEEEEEEEE 72
TL+E ++ EE EE+ + + E E E E E E + EEE ++
Sbjct: 3829 NTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDL 3888
Query: 73 EKEV 76
++EV
Sbjct: 3889 DEEV 3892
Score = 32.3 bits (73), Expect = 0.28
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKE--EEEEEKEEEEEEEEEEEEEKE 75
L KE++ + E+++ +++E+E+E + ++E + + +E + E E
Sbjct: 3933 SDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Score = 32.3 bits (73), Expect = 0.31
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
L+T + E+ E + +E++ + ++++ +EKE+EEE ++ + E+
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Score = 31.5 bits (71), Expect = 0.44
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
LDEKE + ++ + E+ + E +E KEE + EK+E ++E+ EE
Sbjct: 3995 LDEKEGDVSKDSDLED-MDMEAADENKEEADAEKDEPMQDEDPLEEN 4040
Score = 30.0 bits (67), Expect = 1.4
Identities = 18/81 (22%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIFL-------QTLDEKEEEEEEEEEEEEKKEEEEKEEEKE 54
+EE++ D G + E +++ + LD E+ + +E+E + K+ + ++ + E
Sbjct: 3955 DEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDME 4014
Query: 55 EEEEEKEEEEEEEEEEEEEKE 75
+E KEE + E++E ++++
Sbjct: 4015 AADENKEEADAEKDEPMQDED 4035
Score = 28.4 bits (63), Expect = 4.9
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 2 EEEKVEKDKGREK--ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE-------EEKEEE 52
E+EK ++ +EK ++ L+ F+ D+ E E EEE+++ E + +EEE
Sbjct: 2932 EDEKDDEYGEQEKVSDKNDYLKDFIDYDDDGSISTESEPEEEKRECESGFDGWNDYEEEE 2991
Query: 53 KEEEEEEKEEEEEEEEEEEEEKE 75
++E+ EKE E E+ E E E
Sbjct: 2992 DDDEKNEKECELEQNAEILIEDE 3014
Score = 27.7 bits (61), Expect = 8.8
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 23/93 (24%)
Query: 2 EEEKVEKDKGREKERAIELR-----IFLQTLDEKEEEEEEEEEEEEKKEE---------- 46
EE+ + E E A EL + ++ + E + EEE ++ EE
Sbjct: 3843 EEDTANQSDLDESE-ARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSN 3901
Query: 47 -------EEKEEEKEEEEEEKEEEEEEEEEEEE 72
+E EE E E+K E+ E +
Sbjct: 3902 SLNEKLWDEPNEEDLLETEQKSNEQSAANNESD 3934
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 40.2 bits (94), Expect = 3e-04
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
D K+E++E++EEEEE+ EEE +E E E+EEE E+EEEEEE+EE+
Sbjct: 42 DVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDN 88
Score = 39.8 bits (93), Expect = 3e-04
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
DEK+E++EEEEEE+E++ EE ++ E EEE E EEEEEE+EE+ + +
Sbjct: 42 DVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLK 92
Score = 34.4 bits (79), Expect = 0.019
Identities = 24/46 (52%), Positives = 38/46 (82%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
KE E+ ++E++E+ +EEEE++EE+ EE E+ E+EEE E+EEEE+E
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEE 83
Score = 31.8 bits (72), Expect = 0.19
Identities = 21/54 (38%), Positives = 42/54 (77%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + + D+++ +E E+ ++EK+E++E+EEE++EEE E+ E+ E+EEE E++E
Sbjct: 26 VKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEE 79
Score = 30.6 bits (69), Expect = 0.46
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 28 DEKEEEEEEEEEEEEKKEEE------EKEEEKEEEEEEKEEEEEEEEEEEEE 73
D++EEEEE+EEE EE ++ E E EEE+EE+EE+ + ++ E++ +
Sbjct: 50 DDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 29.4 bits (66), Expect = 1.2
Identities = 19/73 (26%), Positives = 40/73 (54%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ K EK + E+E + + D ++EEE E+EEEE+++EE+ + K+ E++
Sbjct: 41 EDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIN 100
Query: 62 EEEEEEEEEEEEK 74
+ +++ +
Sbjct: 101 DIFNSTQDDNAQN 113
Score = 28.7 bits (64), Expect = 1.8
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++E E+ E+EEE E+++EEEE EE+ + ++ +++ + ++
Sbjct: 62 IEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDN 110
Score = 27.5 bits (61), Expect = 4.1
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++E+ +E + ++EK+E+ EEEEEE EEE EE E+ E+E+E+
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEI 74
Score = 26.7 bits (59), Expect = 9.4
Identities = 19/44 (43%), Positives = 35/44 (79%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++E+ +E E ++E++E+++EEEEE++EE EE E+ E+EE+ V
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIV 75
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 41.3 bits (97), Expect = 3e-04
Identities = 17/72 (23%), Positives = 26/72 (36%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+ K +E R R ++ E EE+ K + + + +
Sbjct: 45 EKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPS 104
Query: 63 EEEEEEEEEEEK 74
E EEEEE EE
Sbjct: 105 TESEEEEEPEET 116
Score = 28.2 bits (63), Expect = 4.6
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
K E + K E EEE+E EE
Sbjct: 83 PAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 40.8 bits (96), Expect = 3e-04
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
L + E+E+ E EEEK E + +EE ++ + E + EE +E E + +
Sbjct: 15 LRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGE 67
Score = 36.6 bits (85), Expect = 0.010
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L+ + L E +E + E+E+ E EE++ E + +EE ++ + E + EE +
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLD 56
Score = 36.2 bits (84), Expect = 0.011
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K + A + + ++++ E EEE+ E +EE ++ E + +E +E E +
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Query: 70 EEEEKEVARRWGVQKNRPAM 89
E ++ A
Sbjct: 62 PAASGEGGGGEEEEEEAKAE 81
Score = 35.4 bits (82), Expect = 0.020
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEE--EKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E A ELR + E EEE+ E + E+ ++ + E ++ EE ++ E + E
Sbjct: 9 AELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEG 68
Query: 72 EEKEVARRWGVQKNRPAMNY 91
E + Y
Sbjct: 69 GGGEEEEEEAKAEAAEFRAY 88
Score = 33.9 bits (78), Expect = 0.056
Identities = 21/78 (26%), Positives = 32/78 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E K E E+ E D +EE ++ + E ++ EE E E + +
Sbjct: 9 AELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEG 68
Query: 62 EEEEEEEEEEEEKEVARR 79
EEEEEE + + R
Sbjct: 69 GGGEEEEEEAKAEAAEFR 86
Score = 30.4 bits (69), Expect = 0.93
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
+E E E +E K E E+ E +EE+ E + +EE ++ +
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDEL 58
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 40.6 bits (95), Expect = 3e-04
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
R+ + AIEL +T D+ + E++E + E E+ EEEE E+ EE+EEEE EE
Sbjct: 39 RDGDDAIEL-AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE 97
Query: 72 EEKE 75
E +E
Sbjct: 98 ESEE 101
Score = 33.7 bits (77), Expect = 0.063
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
D E++E E ++ EE+E E+ EE+EE+E EEE EE E
Sbjct: 60 PDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 33.3 bits (76), Expect = 0.10
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
G + E IE+RI +E+ EE EE+EEEE ++E EE E + EE E E+ EE E
Sbjct: 64 GEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHE 123
Query: 71 EEEKE 75
E +
Sbjct: 124 EGFQA 128
Score = 31.7 bits (72), Expect = 0.28
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E +E E E+ +EEE +E E++EEEE +EE EE E + +E+
Sbjct: 65 EDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEEL 112
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 40.6 bits (95), Expect = 4e-04
Identities = 19/45 (42%), Positives = 36/45 (80%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
++K ++EE+++++ + EE+E +E++EEEE E+EEEEE+E+E
Sbjct: 241 DVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 39.4 bits (92), Expect = 0.001
Identities = 21/45 (46%), Positives = 36/45 (80%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
D K ++ ++EE++++ + E++E KE+EEEE+ EEEEEEE+E+E
Sbjct: 241 DVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 38.7 bits (90), Expect = 0.002
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ ++EE+ ++ + EEKE +E+E+EEE EEEEEEE+E E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 37.5 bits (87), Expect = 0.004
Identities = 16/42 (38%), Positives = 31/42 (73%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++ ++EE +++ E++E +E++EEEE EEEEEEE+++
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 35.6 bits (82), Expect = 0.015
Identities = 18/48 (37%), Positives = 35/48 (72%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D+ + + + ++ + +E+++++ + EE+E KE+EEEEE EEEEE+E
Sbjct: 234 DDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Score = 33.6 bits (77), Expect = 0.077
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+++ + + + +K ++EE +++ + EEKE +E+EEEEE EE+E
Sbjct: 231 ASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEE 278
Score = 30.9 bits (70), Expect = 0.44
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D +++ + + K ++ + EE+ +++ + EE+E +E+EEEEE E
Sbjct: 228 DAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETE 275
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 41.2 bits (96), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLS 95
EE EK + E +++ +EE E EKE+E+E E E E E E A + + M+ +LS
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQLS 639
Score = 40.8 bits (95), Expect = 5e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
K ++ EE E+ K+E E+K E+ E E+EKE+E E E E E E+
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 39.3 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
++EE E+ + E E+K EE+E EKE+E+E + E E E E
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 36.2 bits (83), Expect = 0.013
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
KK EE E+ K E E++ EE E E+E+E+E+E R ++ A
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKA 624
Score = 31.6 bits (71), Expect = 0.45
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 16/65 (24%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VEK K RE E ++ EE E E+EK++E E+E E+E E K
Sbjct: 582 EEAVEKAK-REAE---------------QKAREEREREKEKEKEREREREREAERAAKAS 625
Query: 63 EEEEE 67
E
Sbjct: 626 SSSHE 630
Score = 28.5 bits (63), Expect = 4.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
K +++EE E+ + E E++ EE E E+EKE R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKER 610
Score = 27.7 bits (61), Expect = 6.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRS 97
K+ E+ E+ ++E E++ EE E EKE + ++ R A K S S
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSS 627
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family.
This family includes the HABP4 family of
hyaluronan-binding proteins, and the PAI-1 mRNA-binding
protein, PAI-RBP1. HABP4 has been observed to bind
hyaluronan (a glucosaminoglycan), but it is not known
whether this is its primary role in vivo. It has also
been observed to bind RNA, but with a lower affinity
than that for hyaluronan. PAI-1 mRNA-binding protein
specifically binds the mRNA of type-1 plasminogen
activator inhibitor (PAI-1), and is thought to be
involved in regulation of mRNA stability. However, in
both cases, the sequence motifs predicted to be
important for ligand binding are not conserved
throughout the family, so it is not known whether
members of this family share a common function.
Length = 106
Score = 38.5 bits (90), Expect = 4e-04
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
DE E EE+ EEEEK E EEK+ +EE +E EEEE EEEE++
Sbjct: 32 DEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
Score = 32.4 bits (74), Expect = 0.063
Identities = 28/67 (41%), Positives = 37/67 (55%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
G K+ EL +EK E EE++ EEE +E EEE+ EEEE+KE EE E+
Sbjct: 28 GSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKA 87
Query: 71 EEEKEVA 77
+EK A
Sbjct: 88 LQEKRKA 94
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 40.1 bits (94), Expect = 4e-04
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D+ ++++ E+E +E E+ ++E+ EE+E +EEE+ EEE+ E+E+
Sbjct: 133 DDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEILTG 184
Score = 28.9 bits (65), Expect = 2.2
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
L E E+ ++E EE+E++EEE+ EE++ EEE
Sbjct: 148 LRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 27.0 bits (60), Expect = 8.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK 53
+ + D ++ L L+ + ++ EE+E EEEE+ EEE+ EE+
Sbjct: 129 DSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 40.7 bits (95), Expect = 4e-04
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 1 MEEEKVEK--DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
E++ V D R R EL F ++ E E E++E EE +E+ E+E
Sbjct: 297 FEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEV 356
Query: 59 EKEEEEEEEEEEEEEKEV 76
E +E EE E E EV
Sbjct: 357 EIDESVIEEVAEMELLEV 374
Score = 37.2 bits (86), Expect = 0.005
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E D + +E+ + EE +EE E+E + +E EE E E E
Sbjct: 315 IKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEV 374
Query: 61 EEEEEEEEEEEEE 73
+ ++ E E E
Sbjct: 375 QVDDLAERLAETE 387
Score = 34.5 bits (79), Expect = 0.041
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E + EE +EE + E E E EE E + E + ++ E E
Sbjct: 337 KQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAE 385
Score = 31.4 bits (71), Expect = 0.45
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ E + + E+ E E EK+E EE +EE E+E E +E
Sbjct: 314 RIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEV 366
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 40.0 bits (94), Expect = 5e-04
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 23 FLQTLDEKE----EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
FL +DE + EEE+ E E E E E EEE E+
Sbjct: 101 FLNQVDEADLLALMEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 32.3 bits (74), Expect = 0.15
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 23/70 (32%)
Query: 29 EKEEEEEEEEEEEEK-----------------------KEEEEKEEEKEEEEEEKEEEEE 65
E E E E EEE E+K K + K++EK +++ +E +
Sbjct: 141 EPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAPDDDLDEYDY 200
Query: 66 EEEEEEEEKE 75
+E+EEE+ E
Sbjct: 201 GDEDEEEDDE 210
Score = 31.2 bits (71), Expect = 0.34
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EEE E E E E E +E
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEE 150
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 39.5 bits (92), Expect = 5e-04
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
++EEE+ + + EE E++EE+ E+ E+ +EE+EE EE EE+ A + +
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKS 72
Score = 38.4 bits (89), Expect = 0.001
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++EEE+ + + +E EE EEE E+ E+ +EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEE 58
Score = 36.8 bits (85), Expect = 0.004
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
++EEE+ + + E+ EE+E+E E E+ ++E+EE EE EEE
Sbjct: 11 KVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 36.8 bits (85), Expect = 0.004
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
K+EEE+ + + EE +E+EE+ E+ E+ +E++EE EE EEE A
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKA 65
Score = 33.4 bits (76), Expect = 0.048
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
K A +L++ ++EE+ + + EE E+ EEE ++ E +EE++E EE EEE
Sbjct: 2 PPKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAA 61
Query: 72 EEK 74
K
Sbjct: 62 SSK 64
Score = 32.6 bits (74), Expect = 0.100
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE---EKEEEEEEEEEEEEEKEV-------- 76
+E EE+EEE E+ E+ +EE++E E+ EEE K + +E +
Sbjct: 29 EEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETISIPPTPPARR 88
Query: 77 -ARRWGVQKNRPA 88
+RRW P
Sbjct: 89 PSRRWDQTGRFPN 101
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 40.4 bits (95), Expect = 5e-04
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+K+EE+E+E+EE+EEEEEE EE E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 40.0 bits (94), Expect = 8e-04
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 33/86 (38%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEE------------------------------- 51
Q +E+EEEEEEE E ++ EE E
Sbjct: 284 LYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVN 343
Query: 52 --EKEEEEEEKEEEEEEEEEEEEEKE 75
+K+EEEE+++EEEEEEEEE EE E
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPE 369
Score = 38.5 bits (90), Expect = 0.002
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E++++EEE+E+EEEE+EEEE EE E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 38.5 bits (90), Expect = 0.002
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++++EE+E+E EEEEEE+EE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 38.5 bits (90), Expect = 0.002
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E+K EEEE+E+E+EEEEEE+ EE E EE ++ + + PA
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPNDDPA 392
Score = 38.1 bits (89), Expect = 0.003
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E++ +EEE+++EE+EEEEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.0 bits (86), Expect = 0.007
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
E+++EEEE+++EEE+EEE+E EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.0 bits (86), Expect = 0.007
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E+++EEE++E+EE+EEE+EE EE + EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.0 bits (86), Expect = 0.007
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+K+EEEE+E+EEEE++EEE +E E EE
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.4 bits (82), Expect = 0.019
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+++EEEE+E+E++EEEE+E E+ E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.4 bits (82), Expect = 0.022
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E+++++EE+E EEE+EEEEE +E E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 35.0 bits (81), Expect = 0.027
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E+++EEEE+E+EEE++EEEE EE + EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 34.7 bits (80), Expect = 0.037
Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ EEEEEEEE E EE+E EEE+EEE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 34.7 bits (80), Expect = 0.041
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+++EEEE+E +EEEE+EEE EE E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 34.3 bits (79), Expect = 0.046
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ EEEE+E+EEEEE++EE E+ E +E E+ +
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPND 389
Score = 34.3 bits (79), Expect = 0.058
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+E EEEEEEEE + +EE++ EE+EEEE E+ +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 33.9 bits (78), Expect = 0.066
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E+++E++E+E++EEE+EEEE E+ E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.9 bits (78), Expect = 0.067
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E+++EE+++E+E+EEE+EEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 32.7 bits (75), Expect = 0.17
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
E E E EEE++EEE E ++E+E EE+EEEE EE +EEE ++
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTGVNKY 211
Score = 32.7 bits (75), Expect = 0.17
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E E E EEEEE++E E +EE E EEEE+EE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 32.3 bits (74), Expect = 0.19
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E E EEEE++EE + +E++E EEE+EEE EE +EEE V +
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTGVNK 210
Score = 32.3 bits (74), Expect = 0.20
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E E E EEEEEEE+ E ++E+E EEEEEE+ EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 32.3 bits (74), Expect = 0.22
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EEEE+EEE+EE E E EE + E E +E+A
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELA 320
Score = 31.6 bits (72), Expect = 0.33
Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEE-EKEEEKEEEEEEKEEE 63
L E EEEEEEEE E +E+E E+EEE+E EE KEEE
Sbjct: 166 ELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 28.1 bits (63), Expect = 4.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EE+EEE+EEEE + +E EE + E +
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELAD 321
Score = 27.7 bits (62), Expect = 6.9
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E+EEE E +EE+E +EEEE+E E+ +EEE
Sbjct: 173 EEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEG 205
Score = 27.3 bits (61), Expect = 8.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
E++EEEE+EEE E +E +E + E E E + W
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNW 326
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 40.3 bits (95), Expect = 6e-04
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 4 EKVEKD-KGREKERAIELRIFLQ---TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
++E++ K R E R LQ TLD K E +++EE EKKE+E +EK +E+E
Sbjct: 65 AELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKE 124
Query: 60 KEEEEEEEEEEEEEKEVA 77
+E EE E+ EE + ++
Sbjct: 125 EELEELIAEQREELERIS 142
Score = 31.8 bits (73), Expect = 0.28
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 4 EKVEKD-KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE------EEKEEEKEEE 56
E+ +K+ + +KE +E + + L + E E +E E ++ E EE + K E
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMES 98
Query: 57 EEEKEEEEEEEEEEEEEKE 75
++KEE E++E+E KE
Sbjct: 99 LDKKEENLEKKEKELSNKE 117
Score = 30.3 bits (69), Expect = 0.92
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK-----------E 50
EE +++ ++ L + L KE+ +E+EEE E+ E++ E
Sbjct: 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE 147
Query: 51 EEKEEEEEEKEEEEEEE------EEEEEEKEVARR 79
E KE EE EEE E E EEE KE A +
Sbjct: 148 EAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADK 182
Score = 29.9 bits (68), Expect = 1.4
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+V K + E ER EL+ L E + EE ++K E ++E+ E++EKE
Sbjct: 58 EEVHKLR-AELER--ELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELS 114
Query: 64 EEEEEEEEEEKEVARRWGVQKNR 86
+E+ +E+E+E+ Q+
Sbjct: 115 NKEKNLDEKEEELEELIAEQREE 137
Score = 28.7 bits (65), Expect = 3.1
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEE------EEKKEE--EEKEEEKE 54
EE +EK + + L + L+E E+ EE E EE KE EE EEE
Sbjct: 103 EENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEAR 162
Query: 55 EEEEEKEEEEEEEEEEEEEKE 75
E + +E EEE +EE +K+
Sbjct: 163 HEAAKLIKEIEEEAKEEADKK 183
Score = 28.0 bits (63), Expect = 5.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKE---EEEEEKEEEEEEEEEEEEEKEVARR 79
EE + EE KKE E ++E +EE K E E E +E E+ R
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRL 81
Score = 28.0 bits (63), Expect = 5.5
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE-----KEEEEE 58
+++ ++ +E E ++ L+ +E + E E E +++ E + E +EE +
Sbjct: 35 KRIIEEAKKEAE-TLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLD 93
Query: 59 EKEEEEEEEEEEEEEKE 75
K E +++EE E+KE
Sbjct: 94 RKMESLDKKEENLEKKE 110
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 38.8 bits (91), Expect = 8e-04
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E+ EEE EE E EE E+E +EE EEE E + +EE+ + E E ++
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLD 54
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE+ E+ EEE ++ E E+ E E EEE EEE E E +EE+ ++A
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIA 47
Score = 37.7 bits (88), Expect = 0.002
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q +E EE E EE E+E +EE +EE + E +E++ + E E + +E E
Sbjct: 7 QVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELE 57
Score = 36.9 bits (86), Expect = 0.004
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E++ E+ EEE EE + EE ++E +EE EE+ E E +EE+ + E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
Score = 36.5 bits (85), Expect = 0.005
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E E EE E+E EE+ EEE E E +EE+ K E E + +E EE+
Sbjct: 13 EETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERY 60
Score = 34.2 bits (79), Expect = 0.028
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EE+ E+ E++ EE + EE E+E E+E EEE E E ++E A+
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 31.9 bits (73), Expect = 0.19
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+T E+ E+E EEE E++ E E +E++ + E E + +E EE
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 39.9 bits (94), Expect = 8e-04
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
F++ +E EE E E+ E ++ E+ EE EEE +++ +++ +E++++ V
Sbjct: 331 FIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGV 384
Score = 32.1 bits (74), Expect = 0.22
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E EE E E+ E + ++ E+ EEE++ + +++ +E+++E EV
Sbjct: 339 EAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEV 386
Score = 29.1 bits (66), Expect = 2.5
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 29/94 (30%)
Query: 16 RAI--ELRIFLQTLDEKEE-----------EEEEEEEEEEKKEEEEKEEE---------- 52
R I EL + L EK EEE EE + E E
Sbjct: 260 RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL 319
Query: 53 ------KEEEEEEKEEEEEEEEEEEEEKEVARRW 80
+ +E EE EE E ++V W
Sbjct: 320 GVKELCWDLMTFIEENPREEAEEAEAPEKVEFMW 353
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 40.1 bits (93), Expect = 8e-04
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKEEEEE 58
+ E+ +K + K++ E + + L + EEE + + EE KK EE+K EE K+ EE+
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Query: 59 EKEEEEEEEEEEEEEKEV 76
EK+ E ++E EE K+
Sbjct: 1687 EKKAAEALKKEAEEAKKA 1704
Score = 39.0 bits (90), Expect = 0.002
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+++K + EK++A EL+ + K EE ++ EE++KK EE K+ EE+E++ E
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA--EEDEKKAAEA 1693
Query: 64 EEEEEEEEEEKEVARRWGVQKNRPA 88
++E EE ++ E ++ ++ + A
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKA 1718
Score = 37.8 bits (87), Expect = 0.004
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 12/81 (14%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK----EEEKEEEE 57
+ + K + E ++A EL+ K+E EE+++ EE KK EEE EE K+E E
Sbjct: 1689 KAAEALKKEAEEAKKAEELK--------KKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Query: 58 EEKEEEEEEEEEEEEEKEVAR 78
E+K++ EE +++EEE+K++A
Sbjct: 1741 EDKKKAEEAKKDEEEKKKIAH 1761
Score = 37.8 bits (87), Expect = 0.004
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK--EEEKEEEEEEKE 61
E+++K + EK++A EL+ + K EE ++E EE++KK EE K EEEK++ K+
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKK 1764
Query: 62 EEEEEEEEEEEEKEVARRWGVQK 84
EEE++ EE +EKE + +
Sbjct: 1765 EEEKKAEEIRKEKEAVIEEELDE 1787
Score = 37.8 bits (87), Expect = 0.005
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKEEEEE 58
++E EK K E ++A E + K+ EE++++ EE KK EE++ E ++E E
Sbjct: 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
Query: 59 EKEEEEEEEEEEEEEKEVA 77
E ++ EE +++E EEK+ A
Sbjct: 1700 EAKKAEELKKKEAEEKKKA 1718
Score = 37.4 bits (86), Expect = 0.007
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK--EEEKEEEEEE 59
EE+ + E ++A E + + + EE+E++ E +K+ EE K EE K++E EE
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Query: 60 KEEEEEEEEEEEEEK 74
K++ EE ++ EEE K
Sbjct: 1715 KKKAEELKKAEEENK 1729
Score = 36.7 bits (84), Expect = 0.012
Identities = 19/72 (26%), Positives = 42/72 (58%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K K E ++A E + + +K +E ++ E ++K +E +K EE ++ +E K+ EE ++
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Query: 68 EEEEEEKEVARR 79
+E ++ E ++
Sbjct: 1536 ADEAKKAEEKKK 1547
Score = 36.3 bits (83), Expect = 0.015
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKEEEEEEK 60
E+ +K K E ++A E +I + L +K EEE+++ E+ +KKE EEK EE K+ EEE K
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEEL-KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Query: 61 EEEEEEEEEEEEEKEVA 77
+ EE ++ EE+K+ A
Sbjct: 1661 IKAAEEAKKAEEDKKKA 1677
Score = 35.9 bits (82), Expect = 0.018
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKEEEEE 58
E +K E+ + E + E ++ + K+ EE + + EE KK EEEK E+ K++E E
Sbjct: 1585 EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
Query: 59 EKEEEEEEEEEEEEEK 74
EK++ EE ++ EEE K
Sbjct: 1645 EKKKAEELKKAEEENK 1660
Score = 35.5 bits (81), Expect = 0.024
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE---EKEEEKEEEEEEK 60
E+++K + K +A E + +K EE ++ EE+E+K E E EE K+ EE +K
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Query: 61 EEEEEEEEEEEEEKE 75
+E EE+++ EE +K
Sbjct: 1710 KEAEEKKKAEELKKA 1724
Score = 34.3 bits (78), Expect = 0.053
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE------ 54
++ + K +K++A E + + + E ++E EE +K EE +K+E +E
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Query: 55 ---EEEEEKEEEEEEEEEEEEEKEVA 77
EEE K + EE ++E EE+K+ A
Sbjct: 1721 LKKAEEENKIKAEEAKKEAEEDKKKA 1746
Score = 34.3 bits (78), Expect = 0.054
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK-------EEEKE 54
++E EK K E ++A E +KE EE++++ EE KK+EEEK +EE++
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
Query: 55 EEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+ EE ++E+E EEE +E++ RR V K
Sbjct: 1769 KAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
Score = 34.3 bits (78), Expect = 0.055
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE-EKEEEKEEEEEEK 60
EE K + D+ ++ A + + +E ++ +E ++ EE KK +E +K EEK++ +E K
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKN 85
+ EE ++ EE+++ E A++ KN
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEEDKN 1577
Score = 33.2 bits (75), Expect = 0.13
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E K E ++ E + +K EE ++ +E ++K EE +K +E +++ EE +++ +E
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 67 EEEEEEEKEVA 77
++ E K+ A
Sbjct: 1502 AKKAAEAKKKA 1512
Score = 33.2 bits (75), Expect = 0.13
Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E K E ++A E + +E ++ +E ++ EE+KK +E K+ E+ ++ EEK++ EE
Sbjct: 1514 EAKKAEEAKKADEAK----KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569
Query: 67 EEEEEEEKEVARR 79
++ EE++ R+
Sbjct: 1570 KKAEEDKNMALRK 1582
Score = 32.8 bits (74), Expect = 0.18
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIF----LQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKE 54
E +K E+DK +A E + ++ + + EEE++ + EE KK EE K EE K+
Sbjct: 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627
Query: 55 EEEEEKEEEEEEEEEEEEEKE 75
EEE+K+ E+ +++E EE+K+
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKK 1648
Score = 32.8 bits (74), Expect = 0.19
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
EK K E ++ E +K EE ++ EE ++K EE +K +E +++ EE ++ +E
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEA 1488
Query: 67 EEEEEEEKEVA 77
+++ EE K+ A
Sbjct: 1489 KKKAEEAKKKA 1499
Score = 32.4 bits (73), Expect = 0.22
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 2 EEEKVEKDKGREKERAIELRI--FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E++K E+ K E+++ + LR + +E EE + EEEKK + E E +K EE +
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKI 1620
Query: 60 KEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
K EE ++ EEE+++ E ++ ++ + A
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Score = 32.0 bits (72), Expect = 0.37
Identities = 18/76 (23%), Positives = 45/76 (59%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E EK K K++A + + + +E +++ EE+++K +E +K +++ +E +
Sbjct: 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK 1424
Query: 62 EEEEEEEEEEEEKEVA 77
++ EE+++ +E K+ A
Sbjct: 1425 KKAEEKKKADEAKKKA 1440
Score = 32.0 bits (72), Expect = 0.37
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+K K E ++A + +K EE+++ +E ++K EE +K +E +++ EE ++ EE
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA 1462
Query: 67 EEEEEEEKE 75
+++ EE K+
Sbjct: 1463 KKKAEEAKK 1471
Score = 31.3 bits (70), Expect = 0.50
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEE-----EEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
K K E ++A E + + +K + EE ++ E K E E ++ E EEK E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Query: 63 EEEEEEEEEEEKEVARRWGVQKNRPA 88
E+++EE ++K A + ++ + A
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKA 1393
Score = 31.3 bits (70), Expect = 0.52
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK-EEEKEEEEEEKEEEEEE 66
K K E ++A E + + + +E +++ EE ++K +E +K E K++ +E K+ EE +
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Query: 67 EEEEEEEKEVARR 79
+ +E ++ E A++
Sbjct: 1523 KADEAKKAEEAKK 1535
Score = 30.9 bits (69), Expect = 0.65
Identities = 19/68 (27%), Positives = 43/68 (63%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K K EK++A E + + + +E +++ EE ++ +E ++K EE ++ +E K++ EE +
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Query: 68 EEEEEEKE 75
+ +E +K+
Sbjct: 1484 KADEAKKK 1491
Score = 30.9 bits (69), Expect = 0.77
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK--EEEKEEEEEEKEEEE 64
K K ++ E + +K EE++++ +E +K +K +E K++ EE+K+ +E
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Query: 65 EEEEEEEEEKEVARRWGVQKNRPAMNYDK 93
+++ EE +K + ++ + A K
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Score = 30.5 bits (68), Expect = 0.95
Identities = 18/68 (26%), Positives = 40/68 (58%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K K++A E + + + +E +++ EE ++ E ++K EE ++ EE K++ EE +
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Query: 68 EEEEEEKE 75
+ +E +K+
Sbjct: 1471 KADEAKKK 1478
Score = 30.5 bits (68), Expect = 0.97
Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK--EEEKEEEEEE 59
E E E+ +++ E + +K EE+++ +E ++K EE++K +E K+ +
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
Query: 60 KEEEEEEEEEEEEEK 74
K+ +E +++ EE++K
Sbjct: 1418 KKADEAKKKAEEKKK 1432
Score = 30.5 bits (68), Expect = 0.97
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E K E ++A E + +EK++ +E ++ EE KK EE+K+ E+ ++ EE +
Sbjct: 1526 EAKKAEEAKKADEAK----KAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Query: 67 EEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 118
+ EE ++ E AR V K K + + K +++ K
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
Score = 30.5 bits (68), Expect = 1.00
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E + EK A E + KEE +++ + ++K EE++K +E +++ EE +
Sbjct: 1353 EAAADEAEAAEEKAEAAEKK--------KEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
Query: 62 EEEEEEEEEEEEKEVA 77
++ +E ++ K+ A
Sbjct: 1405 KKADELKKAAAAKKKA 1420
Score = 30.5 bits (68), Expect = 1.1
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKEEEEE 58
+ + K + E EK++EE +++ + KK+ EEK +E K++ EE
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Query: 59 EKEEEEEEEEEEEEEKE 75
+K++ +E ++ +K+
Sbjct: 1403 DKKKADELKKAAAAKKK 1419
Score = 29.7 bits (66), Expect = 1.7
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+T K EE + EE ++K E+ K EE + E+ ++ EE + E+ + E+AR+
Sbjct: 1105 KTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159
Score = 29.3 bits (65), Expect = 2.1
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 7 EKDKGRE-KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE--KEEEEEEKEEE 63
EK K E K++A E + L + +++ +E ++K EE++K +E K+ EE +K +E
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Query: 64 EEEEEEEEEEKEVARRWGVQKNR 86
+++ EE ++ E A++ + +
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 29.3 bits (65), Expect = 2.1
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+ ++ K + F + + EE + +E +K EE++K +E ++ EE+K+ +
Sbjct: 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
Query: 64 EEEEEEEEEEK 74
E +++ EE +K
Sbjct: 1306 EAKKKAEEAKK 1316
Score = 29.3 bits (65), Expect = 2.3
Identities = 19/72 (26%), Positives = 45/72 (62%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++ +K +K++A EL+ + +E +++ EE+++ E ++K EE ++ +E K++
Sbjct: 1394 DEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKA 1453
Query: 64 EEEEEEEEEEKE 75
EE ++ EE +K+
Sbjct: 1454 EEAKKAEEAKKK 1465
Score = 29.3 bits (65), Expect = 2.4
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K K E ++A E + E +E E EE+ + E++KEE K++ + K++ EE++
Sbjct: 1335 KKKAEEAKKAAEAA---KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Query: 68 EEEEEEKE 75
+ +E +K+
Sbjct: 1392 KADEAKKK 1399
Score = 29.0 bits (64), Expect = 3.1
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEK--EEEKEEEEEE 59
E +K E+ K ++ + E + +K EE ++ +E ++K EE +K + K++ EE
Sbjct: 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
Query: 60 KEEEEEEEEEEEEEKEVARR 79
K+ E + E E + A
Sbjct: 1342 KKAAEAAKAEAEAAADEAEA 1361
Score = 29.0 bits (64), Expect = 3.5
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+ + R+ E A + + D K+ E + EE K EE K E+ + E ++
Sbjct: 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKA 1208
Query: 63 EEEEEEEEEEEKEVARR 79
EEE + EE + E A++
Sbjct: 1209 EEERKAEEARKAEDAKK 1225
Score = 28.6 bits (63), Expect = 4.1
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 10 KGREKERAIELRIF--LQTLDEKEEEEEEEEEEEEKKEEEEK---EEEKEEEEEEKEEEE 64
K E +A EL+ + DE ++ EE+++ +E KK+ EE +E K++ EE K++ +
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 65 EEEEEEEEEKEVA 77
+++ EE K+ A
Sbjct: 1333 AAKKKAEEAKKAA 1345
Score = 28.6 bits (63), Expect = 4.2
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+E++ EE + E+ +K E +K EE +++ EE ++ EEE EE K R R
Sbjct: 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269
Query: 88 A 88
A
Sbjct: 1270 A 1270
Score = 28.6 bits (63), Expect = 4.4
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ K E + E+ER E K E+ ++ E ++ +E ++ EE ++ EEE+
Sbjct: 1198 DARKAEAARKAEEERKAEEA-------RKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERN 1250
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRS 97
EE + EE ARR K A D+L ++
Sbjct: 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 39.7 bits (93), Expect = 8e-04
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+E+ EK+ EK+R R+ + L++ E +E E EE ++ +EE ++E
Sbjct: 200 QEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAW 259
Query: 63 EEEEEEEEEEEKEV 76
E E E E K V
Sbjct: 260 EGFESEYEPINKPV 273
Score = 33.5 bits (77), Expect = 0.076
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 17/69 (24%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKE-----------------EEKEEEEEEKEEEEEE 66
LQ EKE + E++ +E E+ EE++ E EE +++ EE+ ++E
Sbjct: 199 LQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESA 258
Query: 67 EEEEEEEKE 75
E E E E
Sbjct: 259 WEGFESEYE 267
Score = 31.6 bits (72), Expect = 0.38
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE-------- 52
E EK + A L + L E+ +++ EEE ++E E + E
Sbjct: 215 ELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVR 274
Query: 53 ---KEEEEEEKEEEEEEEEEEEEEKEVARR 79
K + + KE+ +E E E +E++ ++
Sbjct: 275 PKRKTKAQRNKEKRRKELEREAKEEKQLKK 304
Score = 30.8 bits (70), Expect = 0.55
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
Q L ++E E+E + E++ ++ E +E++ E+ E +E E EE +
Sbjct: 196 QELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDD 248
Score = 30.8 bits (70), Expect = 0.68
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
KE E E +EE++ KK+ + KE +E ++E+ ++E+ KE
Sbjct: 290 KELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKE 335
Score = 27.7 bits (62), Expect = 5.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
D +E +EE E+E + +++ ++ E EE++ EK E +E E
Sbjct: 194 DHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSE 239
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 39.4 bits (92), Expect = 9e-04
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
++ E+EE E+ +E++E+E EE+E E EEEE+EE E K
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
Score = 37.8 bits (88), Expect = 0.003
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++ E+EE +++ E+E++E E++E E EEEE+EE EV
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEV 73
Score = 35.9 bits (83), Expect = 0.011
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
T DE+ E++ +E+EE++ EE E E EEEE++E E
Sbjct: 34 LTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 34.4 bits (79), Expect = 0.034
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
F D E+EE E++ +E +E+E EE E E E+EE+EE E
Sbjct: 26 GPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 29.7 bits (67), Expect = 1.3
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
D+ +E+EE+E E+ E E EEE++EE E K
Sbjct: 42 DDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
Score = 28.2 bits (63), Expect = 3.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ E+E+ E++ E+EE+E EE+E E+
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELT 63
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 39.6 bits (93), Expect = 9e-04
Identities = 21/34 (61%), Positives = 25/34 (73%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E+EEE+EEE E+EEEEEEEEE E+EV
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRA 336
Score = 37.7 bits (88), Expect = 0.004
Identities = 29/57 (50%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE------EEEEEEEEEEKEVARR 79
E EEEEEEEEE EE+EEE+EEEE EEE E EEE ARR
Sbjct: 301 SPPEPEEEEEEEEE--VPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEELTVSARR 355
Score = 36.5 bits (85), Expect = 0.009
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
E EEEE+EEEE EEEEEEE+E R +
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFE 331
Score = 30.8 bits (70), Expect = 0.74
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEE 52
+E+EEE EEEEEEE++EE EEE
Sbjct: 309 EEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 28.1 bits (63), Expect = 5.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEE 51
+ +E+EE EEEEEEEE++E +EE
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 39.2 bits (92), Expect = 0.001
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
DK R+ E L I ++ + + +++EE ++E+EEKE KE++ K +++EE++
Sbjct: 521 DKLRD-EWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKK 579
Query: 69 EEEEEK 74
++E EK
Sbjct: 580 KKELEK 585
Score = 37.7 bits (88), Expect = 0.005
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
LD+KEE + E+EE+E KE++ + K++EE++K+E E+ E+
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/41 (26%), Positives = 32/41 (78%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+++EE + E+EEK+ +E++ ++ +++E+++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.7 bits (75), Expect = 0.16
Identities = 9/38 (23%), Positives = 30/38 (78%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+++EE + E+E++E +E++ ++ +++EE++++E ++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 32.3 bits (74), Expect = 0.24
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
KEE ++E+E++E +E++ + +++EE++K+ +
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 31.9 bits (73), Expect = 0.28
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+ +EKE +E++ + KK+EE+K++E E+ E+
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 30.4 bits (69), Expect = 0.88
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
LQ E++E +E++ + K++EEK++++ E+ E+
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 20 LRIFLQTLDEKEE---EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+R L ++D EE E E + E+ + E++ KE+E +++ EE+E + E+ +
Sbjct: 199 VRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASS 258
Score = 37.9 bits (88), Expect = 0.003
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE----EEEEEEEEEEEEKE 75
DE E + E+ E+E+ +E+E +++ EEEE E+ + EE E E
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265
Score = 37.9 bits (88), Expect = 0.003
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E E++ +E+E++++ +EEE + E+ + EE E E E
Sbjct: 225 EDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 37.1 bits (86), Expect = 0.005
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L ++ E + E+ E+E +E++++++ EEEE + E+ + +E
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEE 260
Score = 35.9 bits (83), Expect = 0.011
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
R+ ++++ L E + E+ E+E++ K++E++ + E+EE E+ + E
Sbjct: 200 RDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSE 259
Query: 72 EEKE 75
E +
Sbjct: 260 EMES 263
Score = 35.9 bits (83), Expect = 0.012
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
D ++E++ +E+E++++ EEEE E+ EE E E E E +
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEAS 272
Score = 34.4 bits (79), Expect = 0.035
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E++++ EEEE + ++ + EE E E E E ++ +
Sbjct: 231 KEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPD 278
Score = 32.5 bits (74), Expect = 0.15
Identities = 16/73 (21%), Positives = 38/73 (52%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+K KD R + + F + + + + EE ++ E + E+ ++E++ +++E
Sbjct: 175 EDKAGKDLDRLAACVDDQQAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDE 234
Query: 63 EEEEEEEEEEEKE 75
++++ EEEE
Sbjct: 235 DDDQGEEEESGSS 247
Score = 32.5 bits (74), Expect = 0.16
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
D++ EEEE + ++ + EE E E E E ++ + ++
Sbjct: 236 DDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
Score = 30.9 bits (70), Expect = 0.53
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ EE +E E + E+ E+E + +E+E ++++ EEEE ++
Sbjct: 205 SMDMAEELGDEPESADSEDNEDEDDPKEDE-DDDQGEEEESGSSDSLS 251
Score = 30.6 bits (69), Expect = 0.68
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++++++ EEEE E + EE E E E E ++
Sbjct: 233 DEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDS 279
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E+ EK + E+ R EL ++ E+ ++ EEK+++ E+ + K+ E + +
Sbjct: 76 QAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Query: 62 EEEEEEEEEEEE 73
E E E++ +EE
Sbjct: 136 AEAEAEKKAKEE 147
Score = 35.2 bits (81), Expect = 0.022
Identities = 16/75 (21%), Positives = 41/75 (54%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ + +E+ER +L + +++ E+ ++E E++ EK ++ E+ ++ EE+
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEK 117
Query: 65 EEEEEEEEEKEVARR 79
+++ EE + K+ A
Sbjct: 118 QKQAEEAKAKQAAEA 132
Score = 34.8 bits (80), Expect = 0.031
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
RI Q ++E+E +++ E++ EE EK+ E+ +++ E+ E+ ++ E A +
Sbjct: 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQ 113
Query: 81 GVQKNRPA 88
+K + A
Sbjct: 114 AEEKQKQA 121
Score = 32.5 bits (74), Expect = 0.16
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++ E +K R E+A +KE E+ E+ K+ E+ ++ +E++++ +E
Sbjct: 74 EQQAEEAEKQRAAEQA----------RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123
Query: 62 EEEEEEEEEEEEKEVAR 78
+ ++ E + + E
Sbjct: 124 AKAKQAAEAKAKAEAEA 140
Score = 31.3 bits (71), Expect = 0.46
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E E E++ +EE KK+ EE+ + K E +K+ E +++ E E K A
Sbjct: 136 AEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 31.0 bits (70), Expect = 0.61
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEE--EEEEEEEKKEEEEKEEEKEEEEE 58
+E+ + ++ E+A + Q +++++ EE ++ E K + E + E+K +EE
Sbjct: 94 LEQRAAAEKAAKQAEQAAK-----QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEA 148
Query: 59 EKEEEEEEEEEEEEEKE 75
+K+ EEE + + E +
Sbjct: 149 KKQAEEEAKAKAAAEAK 165
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/67 (19%), Positives = 29/67 (43%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+K+ E + +K+ E +++ E E K + E + + + EE + + E + + E
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Query: 73 EKEVARR 79
A
Sbjct: 209 AAAKAEA 215
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
K + + E A + + ++ EEE + + E K++ + ++K E E + + E
Sbjct: 126 AKQAAEAKAKAE-AEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAE 184
Query: 64 EEEEEEEEEEKEVA 77
+ + + EE K A
Sbjct: 185 AKAKAKAEEAKAKA 198
Score = 29.4 bits (66), Expect = 1.9
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE K K++A E + +K E E + + E + K + E+ + K E + K
Sbjct: 153 EEEAKAKAAAEAKKKAAEAK-------KKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKA 205
Query: 62 EEEEEEEEEEEEKEVAR 78
E + E E A
Sbjct: 206 AAEAAAKAEAEAAAAAA 222
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 39.1 bits (92), Expect = 0.002
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
EEEE +EE + + EEE K E +E E EEE + E E A A
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAA 96
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+E +EE + E EEE K E E+ E EEE K E EE + A
Sbjct: 41 EEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAA 92
Score = 37.9 bits (89), Expect = 0.004
Identities = 21/85 (24%), Positives = 35/85 (41%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+++ E+ EL I +++ EEEE +EE +++ EEE + E EE + EE
Sbjct: 11 KELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE 70
Query: 64 EEEEEEEEEEKEVARRWGVQKNRPA 88
E + E A
Sbjct: 71 EAKAEAAAAAPAEEAAEAAAAAEAA 95
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+E+E ++E++EEEE+ EE+++E+E EEEE V +
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKV 145
Score = 36.1 bits (84), Expect = 0.005
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE E + +EE+EE+E++EE+++E+E E+E +
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 35.8 bits (83), Expect = 0.006
Identities = 14/32 (43%), Positives = 27/32 (84%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EE++ ++ EE+EEE+++EE+++E+E EE+E
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 35.8 bits (83), Expect = 0.006
Identities = 16/37 (43%), Positives = 29/37 (78%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EE + ++++E+E+EE++EE ++E+E EEEE K+V
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKV 145
Score = 34.6 bits (80), Expect = 0.015
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
EE+E ++EE EEE+++EE++ E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.6 bits (80), Expect = 0.016
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
EE+E +EE++EEE +EE+++++E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.6 bits (80), Expect = 0.017
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
+E E +++EE+EEEE EE++ E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.6 bits (80), Expect = 0.018
Identities = 14/31 (45%), Positives = 27/31 (87%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
EE++ +++E++EE+E++EE+ +E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.2 bits (79), Expect = 0.021
Identities = 12/39 (30%), Positives = 30/39 (76%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + +++ +++EE+EEEE+ +E+++++E +EEE K+
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 34.2 bits (79), Expect = 0.021
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
EE+E + EE+E+EE+ EE+++E E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 33.8 bits (78), Expect = 0.028
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
EE+E +++E+ EEEE +EE ++E+E +EEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 33.8 bits (78), Expect = 0.031
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE 52
L + + +EE+EEEE++EE +E+E EEE
Sbjct: 105 HLVASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 33.1 bits (76), Expect = 0.054
Identities = 13/31 (41%), Positives = 28/31 (90%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
EE+E ++++++EEE+++E++++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 32.3 bits (74), Expect = 0.087
Identities = 13/31 (41%), Positives = 27/31 (87%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
EE+E ++ +E+EE+E+++E+++E++ EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 38.8 bits (90), Expect = 0.002
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
+ EE E++ E K E +++E+ E+ EEE+ EEE K+ + ++
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGK 347
Score = 31.9 bits (72), Expect = 0.31
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
DE EE EEE+ EEE ++ ++ K+ + ++ ++++ + +
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGD 360
Score = 29.9 bits (67), Expect = 1.2
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEE----EEEKEEEEEEEEEEEEEKEV 76
E E++E+ EE EEEK EEE +K ++ + +K ++++ + ++ +
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDD 364
Score = 29.5 bits (66), Expect = 1.6
Identities = 10/46 (21%), Positives = 28/46 (60%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++ EE EEE+ EEE ++ K+ +K + ++ ++++ + ++ +
Sbjct: 318 EDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSD 363
Score = 29.2 bits (65), Expect = 2.5
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L + + E E++E+ +E EE++ E+E +K ++ ++ + ++ +
Sbjct: 302 DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLD 352
Score = 28.8 bits (64), Expect = 2.7
Identities = 14/71 (19%), Positives = 33/71 (46%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K + D ++ +R + D+ ++E EE+ + EE+E++ + +
Sbjct: 252 KKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAK 311
Query: 65 EEEEEEEEEKE 75
E E++E+ +E
Sbjct: 312 PEIEQDEDSEE 322
Score = 28.4 bits (63), Expect = 4.5
Identities = 12/76 (15%), Positives = 43/76 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E++ + + R +L+I D++++ +E ++ E+ EE+ K+++K+ + +K+
Sbjct: 195 DEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
Query: 62 EEEEEEEEEEEEKEVA 77
+++++ + + +
Sbjct: 255 LDDDKKGKRGGDDDAD 270
Score = 27.6 bits (61), Expect = 7.1
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE--------K 53
E+ EK K ++K+ A + K +++ +E + ++E EE
Sbjct: 234 EDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSAS 293
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLR 99
+ EE+E++ E + E E + LS+ +
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGK 339
Score = 27.2 bits (60), Expect = 10.0
Identities = 10/52 (19%), Positives = 31/52 (59%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
Q D +E EEE+ EEE ++ +K ++ + ++ ++++ + ++ ++ ++
Sbjct: 316 QDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDI 367
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 38.8 bits (90), Expect = 0.002
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E E+ + + + + E E+ E +E E EV +
Sbjct: 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK 419
Score = 38.4 bits (89), Expect = 0.002
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+E+ + + + + + EE E +E E E E A
Sbjct: 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA 420
Score = 36.1 bits (83), Expect = 0.015
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ + + + + EE E +E E E E+
Sbjct: 378 DLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 35.7 bits (82), Expect = 0.016
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE E D RE+ + Q + + E E+ E E E E E+
Sbjct: 364 EETSEADIEREQPGDLAG----QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK 419
Query: 63 EEEEEEEEEEEKEVA 77
+ + ++
Sbjct: 420 AAPIPDPAKPDELAV 434
Score = 35.3 bits (81), Expect = 0.022
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E+ E + E E+ + + + E EE E + +K P
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Query: 89 MNYDK 93
+ K
Sbjct: 424 PDPAK 428
Score = 33.8 bits (77), Expect = 0.081
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + + + + E+ E +E + E EK + +
Sbjct: 379 LAGQAPAAHQVDAEAASAA--------PEEPAALASEAHDETEPEVPEKAAPIPDPAKPD 430
Query: 61 EEEEEEEEEEEEEKEVARR 79
E ++ E + RR
Sbjct: 431 ELAVAGPGDDPAEPDGIRR 449
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 38.1 bits (89), Expect = 0.002
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEK + + RE E E R + L+EK E E +EEEE E++ E++KEEE+ +E EE+
Sbjct: 11 LEEKQARRQQREAEE--EEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68
Query: 62 EEEEEEEEEEEEKEVARRWGVQKN 85
+E+EE E+ + V G K
Sbjct: 69 RKEQEEYEKLKSSFVVEEEGTDKL 92
Score = 37.4 bits (87), Expect = 0.002
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE+ + ++ RE ER E + + +KEEEE +E EE+ +KE+EE E+ K E+E
Sbjct: 28 REERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEE 87
Query: 62 EEEEEEEEEEE 72
++ +EE
Sbjct: 88 GTDKLSADEES 98
Score = 37.4 bits (87), Expect = 0.003
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K R K + R + +E+E EE ++ EE+ + E +E+EE +EE E++KEEEE +E E
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65
Query: 70 EEEEKE 75
E+ KE
Sbjct: 66 EQARKE 71
Score = 36.6 bits (85), Expect = 0.005
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
L+EK+ ++ E EEE++EE +K EEK E E ++EEE EEE E+++E+E + Q +
Sbjct: 11 LEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Query: 87 PAMNYDKLS 95
Y+KL
Sbjct: 71 EQEEYEKLK 79
Score = 35.8 bits (83), Expect = 0.010
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K G +K +E + + E EEEE EE ++ E+K E E++EE+E EEE ++++EEEE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 68 EEEEEEKE 75
+E EE+
Sbjct: 61 RKEREEQA 68
Score = 30.1 bits (68), Expect = 0.85
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
++ + EE++ ++++ EEE+ EE+++ EE++E E +EEEE EEE+E + +K R
Sbjct: 7 KRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.9 bits (91), Expect = 0.002
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE E+ + +++ + EE E+ E EE KEE E++ EE E+
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Query: 62 EEEEEEEEEEEEKEVAR 78
E EE E E E+A
Sbjct: 378 FEALREELAELEAELAE 394
Score = 38.9 bits (91), Expect = 0.002
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E++E + +ER EL + + +E EE +E+ E KEE E+ E EE E+
Sbjct: 296 EIEELEGEISLLRERLEELEN--ELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353
Query: 62 EEEEEEEEEEEEK 74
E EE +EE EEK
Sbjct: 354 AELEEAKEELEEK 366
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EE++E+ K + + EL L+E E+ E EE +E+ EE+ +E EE +
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379
Query: 61 EEEEEEEEEEEEEKEVARR 79
EE E E E E+
Sbjct: 380 ALREELAELEAELAEIRNE 398
Score = 37.4 bits (87), Expect = 0.005
Identities = 26/98 (26%), Positives = 41/98 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++++ KE E L+ L++ E EE +EE E+K EE +E E +E
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE 383
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLR 99
E E E E E + + ++LS L
Sbjct: 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421
Score = 37.4 bits (87), Expect = 0.006
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E++E+ + +E L + ++ +EE EE E E+ E+ E E+ +EE E++
Sbjct: 308 RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL 367
Query: 63 EEEEEEEEEEEKEVARRW 80
EE EE + +
Sbjct: 368 SALLEELEELFEALREEL 385
Score = 37.4 bits (87), Expect = 0.006
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+E++ + K +E E+ + + L+E E E EE EE E+ +E+ + ++E EE E
Sbjct: 287 QEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLL 346
Query: 63 EEEEEEEEEEEKEVARR 79
EE E+ E E+
Sbjct: 347 EELEQLLAELEEAKEEL 363
Score = 37.4 bits (87), Expect = 0.006
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E E+++++ KE EL + L E+ EE E E EE E++ EE KE+ + +EE +
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340
Query: 61 EEEEEEEEEEEEEKEVARR 79
E E EE E+ E+
Sbjct: 341 ERETLLEELEQLLAELEEA 359
Score = 36.2 bits (84), Expect = 0.014
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++E++ +E EL L L+E+ EE E+E EE +++ EE + E++E E+E KE
Sbjct: 822 RRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881
Query: 62 EEEEEEEEEEEEKEVARR 79
EEE+EE EEE +E+
Sbjct: 882 LEEEKEELEEELRELESE 899
Score = 35.8 bits (83), Expect = 0.021
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E ++E+ + R +E ++ + L+E+E EE E+ + EE ++E E++ +E
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Query: 63 EEEEEEEEEEEKEVAR 78
EE E EE E+
Sbjct: 375 EELFEALREELAELEA 390
Score = 35.1 bits (81), Expect = 0.029
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+++E+ K +E EL + L E +EE EE E E E +E E E EE E+
Sbjct: 266 EKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325
Query: 63 EEEEEEEEEEEKEVARR 79
EE +E+ E ++E+ R
Sbjct: 326 EELKEKIEALKEELEER 342
Score = 34.7 bits (80), Expect = 0.038
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+++E+ + +E +L + L+E E+E EE +EE E+ E E++E E E +E E+E+
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886
Query: 63 EEEEEEEEEEEKEVAR 78
EE EEE E E E+A
Sbjct: 887 EELEEELRELESELAE 902
Score = 34.7 bits (80), Expect = 0.044
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE++E+ + R +E EL + L+E +E EE EEE E EE + ++E EE E++
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 62 EEEEEEEEEEEEKE 75
+ +EE EE E+E
Sbjct: 788 RQALQEELEELEEE 801
Score = 34.7 bits (80), Expect = 0.050
Identities = 33/78 (42%), Positives = 51/78 (65%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E +E+ + R ++ EL ++ L+EK +E EEE EE EK+ EE KEE +E E E++E
Sbjct: 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874
Query: 62 EEEEEEEEEEEEKEVARR 79
E+E +E EEE++E+
Sbjct: 875 LEDELKELEEEKEELEEE 892
Score = 34.3 bits (79), Expect = 0.052
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K E + + ++ +E + E EEE ++ + + EE EEE EE EEE
Sbjct: 694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEEL 753
Query: 65 EEEEEEEEEKE 75
EE +E EE E
Sbjct: 754 EELQERLEELE 764
Score = 34.3 bits (79), Expect = 0.052
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E+++ +E EL L+ L E+ EE EEE E E+ + KEE +E EE+ +
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790
Query: 62 EEEEEEEEEEEEKEVARR 79
+EE EE EEE +E RR
Sbjct: 791 LQEELEELEEELEEAERR 808
Score = 34.3 bits (79), Expect = 0.057
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++E+ + R EL Q + E+E EE EEE E+ EE+ E E+E EE EKE
Sbjct: 799 EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKEL 858
Query: 63 EEEEEEEEEEEKEVAR 78
EE +EE EE E E
Sbjct: 859 EELKEELEELEAEKEE 874
Score = 33.9 bits (78), Expect = 0.084
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ + R +EL + L L E +E EE EEE + EEE +E ++E EE EKE EE + E EE
Sbjct: 219 KAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278
Query: 72 EEKEVAR 78
+E+
Sbjct: 279 LREELEE 285
Score = 33.9 bits (78), Expect = 0.087
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E++E++ +E+ EL L+ L+++ EE +EE EE E ++EE ++E KE EEE++E
Sbjct: 829 EIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNR 86
EEE E E E E+ + R
Sbjct: 889 LEEELRELESELAELKEEIEKLRER 913
Score = 33.9 bits (78), Expect = 0.088
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTL-DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+E++E + +E EL L+ L E E +EE E+ E+ EE E + E+ E E +
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930
Query: 61 EEEEEEEEEEEEEKEVARR 79
EEE EEE E+ + R
Sbjct: 931 LEEELEEEYEDTLETELER 949
Score = 32.8 bits (75), Expect = 0.19
Identities = 23/79 (29%), Positives = 30/79 (37%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E E++ + KE E L E+ E EE E + E E E EE + E
Sbjct: 347 EELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREI 406
Query: 61 EEEEEEEEEEEEEKEVARR 79
E EE E E E +
Sbjct: 407 ESLEERLERLSERLEDLKE 425
Score = 32.8 bits (75), Expect = 0.20
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDE-----KEEEEEEEEEEEEKKEEEEKEEEKEEE 56
E E++ ++ +E +EL+ ++ L+ +E EE E E EE +E E+ +EK E
Sbjct: 275 ELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEA 334
Query: 57 EEEKEEEEEEEEEEEEEKE 75
+E+ EE E EE E+
Sbjct: 335 LKEELEERETLLEELEQLL 353
Score = 32.8 bits (75), Expect = 0.21
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEE--EEEEEEEEEKKEEEEKEEEKEEEEEE 59
+ +E++ ++R L ++ L+E+ EE E+ +E EEE +E E++ EE +EE EE
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
Query: 60 KEEEEEEEEEEEEEKEVAR 78
E E+EE E+E +E E +
Sbjct: 868 LEAEKEELEDELKELEEEK 886
Score = 32.4 bits (74), Expect = 0.25
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E E+ E+ + L + L+++ EE EEE EE E+K +E +EE +E E+E +
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELE 859
Query: 61 EEEEEEEEEEEEEKEVA 77
E +EE EE E E++E+
Sbjct: 860 ELKEELEELEAEKEELE 876
Score = 32.0 bits (73), Expect = 0.33
Identities = 28/71 (39%), Positives = 35/71 (49%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+D E R +E ++E EEE E+ + EE EEE EE EEE EE +E
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760
Query: 68 EEEEEEKEVAR 78
EE EEE E
Sbjct: 761 EELEEELESLE 771
Score = 32.0 bits (73), Expect = 0.34
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EE + E ++ + + + + + E +EE EE E E E+ EE E E EE
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321
Query: 61 EEEEEEEEEEEEEKE 75
EE EE +E+ E +
Sbjct: 322 EERLEELKEKIEALK 336
Score = 31.6 bits (72), Expect = 0.36
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ E+++++ +E +L+ L+ L+E+ EE EEE EE +++ EE +EE + EE
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALA 775
Query: 61 EEEEEEEEEEEEEKE 75
+ +EE EE EE+ +
Sbjct: 776 KLKEEIEELEEKRQA 790
Score = 31.6 bits (72), Expect = 0.40
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++E+ R ++ EL+ L+E + E EE EE E+ EE+ +E +E E+E
Sbjct: 410 EERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELEREL 469
Query: 63 EEEEEEEEEEEKEV 76
E +EE + EKE+
Sbjct: 470 AELQEELQRLEKEL 483
Score = 31.6 bits (72), Expect = 0.40
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE + E ++ + A+E + + E+E EE EEE +E EEK +E EEE EE E
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855
Query: 62 EEEEEEEEEEEEKEVARR 79
+E EE +EE EE E +
Sbjct: 856 KELEELKEELEELEAEKE 873
Score = 31.6 bits (72), Expect = 0.47
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E + +L+ + L+E EEE EEE E+ +EE +E EKE EE + E EE
Sbjct: 221 ELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR 280
Query: 67 EEEEEEEKEV 76
EE EE ++E+
Sbjct: 281 EELEELQEEL 290
Score = 31.2 bits (71), Expect = 0.54
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++ + + + ++ EL+ L E+ EE + E+ E + +E ++E E+E
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732
Query: 63 EEEEEEEEEEEKEVAR 78
E+ + EE E+E+
Sbjct: 733 EQLQSRLEELEEELEE 748
Score = 31.2 bits (71), Expect = 0.61
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E E +E+ + KE EL Q L E+ EE EEE EE E++ + + E + E+ +
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824
Query: 61 EEEEEEEEEEEEEKEVARR 79
E+E EE EEE +E+ +
Sbjct: 825 RLEQEIEELEEEIEELEEK 843
Score = 30.8 bits (70), Expect = 0.67
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLD------EKEEEEEEEEEEEEKKEEEEKEEEKE 54
E E++E+ + +E EL L+ + E+E E E+ E ++E EE EEE E
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 55 EEEEEKEEEEEEEEEEEEEKE 75
E EE+ +E EEE EE E+E E
Sbjct: 839 ELEEKLDELEEELEELEKELE 859
Score = 30.8 bits (70), Expect = 0.71
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE + K K +E + + + L+E EEE EE E + E E + E+ E E+E
Sbjct: 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830
Query: 63 EEEEEEEEEEEKEVA 77
EE EEE EE E+++
Sbjct: 831 EELEEEIEELEEKLD 845
Score = 30.8 bits (70), Expect = 0.71
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++E + +E L+ L++L++ EE + EE E++ EE K E EEE ++ +
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736
Query: 64 EEEEEEEEEEKEVAR 78
EE EEE +E+
Sbjct: 737 SRLEELEEELEELEE 751
Score = 30.8 bits (70), Expect = 0.76
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE---------EKEEEK 53
EE++ + + +E EL + ++E + E EE EE E+ +EE E E E
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304
Query: 54 EEEEEEKEEEEEEEEEEEEE 73
E EE E E EE EE
Sbjct: 305 SLLRERLEELENELEELEER 324
Score = 30.8 bits (70), Expect = 0.76
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+ +E+ + + +E +L + L EEE E+ + E+ EEE +E E+E EE ++
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760
Query: 63 EEEEEEEEEEEKEVARR 79
EE EEE E E+ +A+
Sbjct: 761 EELEEELESLEEALAKL 777
Score = 30.5 bits (69), Expect = 1.1
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE-EEKEEEEEEK 60
+E++E+ + +E L + L+ E+ E E+E E+ EEE +E EEK +E EE+
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850
Query: 61 EEEEEEEEEEEEEKEVARR 79
EE E+E EE +E+
Sbjct: 851 LEELEKELEELKEELEELE 869
Score = 30.1 bits (68), Expect = 1.2
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EE + E ++ +E+ +E + + +EE EE EE+++ +E+ EE EEE EE
Sbjct: 746 LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805
Query: 61 EEEEEEEEEEEEEKEVAR 78
E + E E E E R
Sbjct: 806 ERRLDALERELESLEQRR 823
Score = 29.7 bits (67), Expect = 1.6
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ + R++ +E + + +E +EE EE E+E +E + + EE EE EE +EE
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291
Query: 66 EEEEEEEEKEVARR 79
E +EE EE E
Sbjct: 292 ELKEEIEELEGEIS 305
Score = 29.7 bits (67), Expect = 2.0
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++E + + E+ + +EE EE EEE E+ E E+E E E+
Sbjct: 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823
Query: 63 EEEEEEEEEEEKEVA 77
E E+E EE E+E+
Sbjct: 824 ERLEQEIEELEEEIE 838
Score = 28.9 bits (65), Expect = 3.0
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++E++ +E +L+ + ++E EE+ + +EE E+ EEE +E E+ + E+E
Sbjct: 759 RLEELEEELESLEEALAKLK---EEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815
Query: 62 EEEEEEEEEEEEKEVARRW 80
E E+ E E+E+
Sbjct: 816 LESLEQRRERLEQEIEELE 834
Score = 28.9 bits (65), Expect = 3.2
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEE---EEEEEEEEEKKEEEEKEEEKEEEEE 58
E++E+ +E EL L + + EE E E EE ++ E E+ KEE +E
Sbjct: 370 LLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKE 429
Query: 59 EKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEK 104
+ E EE + E EE E Q +L R L E+
Sbjct: 430 LEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475
Score = 28.9 bits (65), Expect = 3.4
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EL + L EEE EE +EE E+ E+E +E + E EE +E EE +EE E ++E+
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
Query: 79 RWG 81
G
Sbjct: 300 LEG 302
Score = 28.5 bits (64), Expect = 3.7
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E++E++ +ER EL L++L+E + +EE EE E+K + +EE +E EEE +E
Sbjct: 745 ELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEE 804
Query: 62 EEEEEEEEEEEEKEVARR 79
E + E E + + +R
Sbjct: 805 AERRLDALERELESLEQR 822
Score = 28.1 bits (63), Expect = 4.9
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E ++E + KE +LR L+ L+ K E E E E E++ EEE E+ E E E +
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951
Query: 62 EEEEEEEEEEEE 73
E EEE E
Sbjct: 952 ERLEEEIEALGP 963
Score = 28.1 bits (63), Expect = 5.4
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E + E ++ ++ ++ + +++E E+E +E EEEK+E EE+ E E E E
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903
Query: 61 EEEEEEEEEEEEEKEVARRW 80
+EE E+ E EE E
Sbjct: 904 KEEIEKLRERLEELEAKLER 923
Score = 27.4 bits (61), Expect = 9.2
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E + + ++ +E + + L + +E +E EE EE E EEE EE +EE
Sbjct: 205 LERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEE--ELSRLEEELEELQEEL 262
Query: 61 EEEEEE-EEEEEEEKEVARRW 80
EE E+E EE + E +E+
Sbjct: 263 EEAEKEIEELKSELEELREEL 283
Score = 27.4 bits (61), Expect = 9.5
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E ++EK + K ELR L+E + EE E + E+ + E E+E E+ +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 63 EEEEEEEEEEEKE 75
EE EEE EE E+E
Sbjct: 740 EELEEELEELEEE 752
Score = 27.4 bits (61), Expect = 10.0
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEE-EEEEEEKKEE-EEKEEEKEEEEEEK 60
E+++E+ K +E E L E EEE+EE EEE E + E E +EE E+ E
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
Query: 61 EEEEEEEEEEEEEKEVARR 79
EE E + E E E
Sbjct: 915 EELEAKLERLEVELPELEE 933
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 38.7 bits (90), Expect = 0.002
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q ++ E + E +E KKEEE +E EE E+E ++ + E E +EEKE
Sbjct: 58 QNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKE 108
Score = 31.8 bits (72), Expect = 0.33
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE-EEEEEEEEEEEEKEVARR 79
KEEE +E EE +KE+++ + E E +EEKE E EE + E R
Sbjct: 77 KEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRN 127
Score = 27.5 bits (61), Expect = 7.7
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EL + + +E EE E+E++ + E E ++E+E+ E EE + E ++
Sbjct: 71 ELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRN 127
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE---KEVARR 79
+ ++ + EEE+EEE E + + +E E E+E+EE++EE E E+++R
Sbjct: 3 EQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60
Score = 35.2 bits (81), Expect = 0.030
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+E+ + EEE+++E E + ++ E E+E+E+EE+ E A
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEA 49
Score = 30.5 bits (69), Expect = 0.88
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
DE+E E + ++E E+++E+EE+ EE E + E ++E AR ++K +
Sbjct: 14 DEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKK 73
Query: 88 AM 89
Sbjct: 74 QE 75
Score = 30.2 bits (68), Expect = 1.1
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 28 DEKEEEEEEEEEE------EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+ EEE+EEE E +++E E E+E+EE +EE E + E K R
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66
Query: 82 VQKNRPAMNYDKL 94
K + K+
Sbjct: 67 ELKKQKKQEIQKI 79
Score = 29.0 bits (65), Expect = 3.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
L L EKE + ++ + ++ E EE + EE+EE+E+
Sbjct: 772 LTELYEKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQ 818
Score = 27.8 bits (62), Expect = 6.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+R +Q + + ++ + E E+ + EE+EE+E+ EE
Sbjct: 779 EVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 27.8 bits (62), Expect = 6.5
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EE+ + E E +E + + +++E + E+E++E+++E E K
Sbjct: 1 EEEQVNTQANEEEDEEELE------AVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAK 54
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
E + E+ +E + ++ +QK N
Sbjct: 55 AEISKREKARLKELKKQKKQEIQKILEQQN 84
Score = 27.8 bits (62), Expect = 6.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
Q L E E+E + +K + + + E EE + EE+EE+E+
Sbjct: 770 QRLTELYEKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQ 818
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 37.8 bits (88), Expect = 0.002
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
++K+ K K K+ A+E EK+ E E EKK E EE +EE
Sbjct: 118 KDKLSKAKKAAKKAALEA--------EKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEE 169
Query: 63 EEEEEEEEEEEKE 75
E EE EE E
Sbjct: 170 EAEEAPAEEAPAE 182
Score = 34.8 bits (80), Expect = 0.020
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 2 EEEKVEKDKGREKERAI-ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ +K K E E+ + E R + + EK+ E EE EE+E E+ EE
Sbjct: 123 KAKKAAKKAALEAEKKVNEARA--EAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAP 180
Query: 61 EEEEEE 66
EE E
Sbjct: 181 AEESAE 186
Score = 32.8 bits (75), Expect = 0.094
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEE---EKEEEEEEKEEEEEEEEEEEEEKEVA 77
L + ++ ++ E EKK E + E EK+ E EE EEEE E A
Sbjct: 119 DKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEA 174
Score = 30.1 bits (68), Expect = 0.71
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 30 KEEEEEEEEEEEEKKEEEEKE--EEKEEEEEEKEEEEEEEEEEEEEKEVA 77
K++ + ++ ++ E EK+ E + E EK+ E EE
Sbjct: 118 KDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAE 167
Score = 27.8 bits (62), Expect = 3.9
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 27 LDEKEEEEEEEEEEEEKK--EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ K+++ + ++ +K E E+K E E +++ E EE A
Sbjct: 114 VNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 38.1 bits (89), Expect = 0.002
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 24 LQTLDEKEEEEEEEEEE------------EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ DE+E+EE+EEE+ + K EE+EK + ++EE+ +E EE+ E+E
Sbjct: 34 KDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDEL 93
Query: 72 EEKEVARR 79
EK R+
Sbjct: 94 AEKLRLRK 101
Score = 35.8 bits (83), Expect = 0.012
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE EK++ + K A + L K EE+E+ + E+E+K E EE+ E+E ++
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAK--KALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEK 96
Query: 62 EEEEEEEEE 70
+ +EE
Sbjct: 97 LRLRKLQEE 105
Score = 35.8 bits (83), Expect = 0.013
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 28 DEKEEEEE----EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
DE E+++ +EEE+EEK+EE+ K K + ++ + + EE+E+ + EKE
Sbjct: 26 DEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 33.1 bits (76), Expect = 0.079
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 9/60 (15%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEE---------EEKEEEEEEEEEEEEEKEVARR 79
+ E+E+++ ++ +++E+EEKEEEK + + K EE+E+ + E+EEK +
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 27.3 bits (61), Expect = 6.2
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
++EE E K ++K ++++E+++ K+ +EEE+EE+EE++
Sbjct: 5 DDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKV 52
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 37.3 bits (87), Expect = 0.002
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
++EK EE+E E+EE+E+KEE+EKE K ++E+ E+ EE E+ + K +AR
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLAR 65
Score = 28.8 bits (65), Expect = 1.6
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEE--------EEEEEEEEEEEKEVARRWGVQKNRPAMN 90
EE+++E+E ++EEKE +EE+++E EE E+ EE EK + + +
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYD 73
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/48 (27%), Positives = 40/48 (83%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
KE EE+++ + ++KK +++K+++K++++++K+++ E+++E+E E ++
Sbjct: 76 KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 35.1 bits (81), Expect = 0.016
Identities = 12/57 (21%), Positives = 37/57 (64%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
++++ +++++++K ++++K+++K E+++EKE E++ E+ + E K R
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPR 142
Score = 32.7 bits (75), Expect = 0.10
Identities = 12/70 (17%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2 EEEKVEKDKGREKERAIE-LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E K K +E IE ++ + + + ++++ +++++K ++++ +++ ++ E++
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Query: 61 EEEEEEEEEE 70
E+E E++ E+
Sbjct: 115 EKEAEDKLED 124
Score = 28.9 bits (65), Expect = 1.9
Identities = 12/53 (22%), Positives = 37/53 (69%), Gaps = 8/53 (15%)
Query: 31 EEEEEEEEEEEE--------KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E +++++E KKE EEK++ K ++++ K+++++++++++++K+
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 27.0 bits (60), Expect = 6.9
Identities = 10/47 (21%), Positives = 36/47 (76%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E +++++E E+ E+ +KE E++++ + K+++ +++++++++K+
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKK 102
Score = 27.0 bits (60), Expect = 7.0
Identities = 11/53 (20%), Positives = 37/53 (69%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
F + + E E +++++E +E E+ ++E EE+++ K ++++ +++++++K+
Sbjct: 48 FATPIYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKD 100
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 38.6 bits (91), Expect = 0.002
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE-EKEEEKEEEEEEKEE 62
+ EK+ +ER EL+ + L +KEE + + E EK+EEE EK+E++ E+++++ E
Sbjct: 71 NEFEKEL---RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127
Query: 63 EEEEEEEEEEEKEVAR 78
++EEE EE E+++
Sbjct: 128 KKEEELEELIEEQLQE 143
Score = 38.2 bits (90), Expect = 0.003
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 1 MEEEKVEKDKG-REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E+E E+ ++ E+ + + + LD K E E+ EEE EKKE+E +++++E E++E
Sbjct: 73 FEKELRERRNELQKLEKRLLQKE--ENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130
Query: 60 KEEEEEEEEEEEEEKEVA 77
+E EE EE+ +E + ++
Sbjct: 131 EELEELIEEQLQELERIS 148
Score = 34.4 bits (80), Expect = 0.054
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 1 MEEEKVEKDKGRE-KERAIELRI-FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
E E ++K+ E KE +LR F + L E+ E ++ E+ +KEE + + E+
Sbjct: 49 KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
Query: 59 EKEEEEEEEEEEEEEKEVARR 79
E+E E++E+E E++++E+ ++
Sbjct: 109 EEELEKKEKELEQKQQELEKK 129
Score = 34.0 bits (79), Expect = 0.062
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKK--------EEEEKEEEK 53
+ E +EK + +++ EL Q L++KEEE EE EE+ ++ EE KE
Sbjct: 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILL 160
Query: 54 EEEEEEKEEE------EEEEEEEEEEKEVARR 79
E+ EEE E E EEE +EE + A+
Sbjct: 161 EKVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192
Score = 30.1 bits (69), Expect = 1.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+E ++E E ++E E ++E K E EKE E E ++ EK + ++
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQK 94
Score = 29.0 bits (66), Expect = 2.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE--EEEEKEEEEEEEEEEEEE 73
+ +I + E EEE + EE +K+ E K+E E EE K E E+E E
Sbjct: 22 YFVRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERR 81
Query: 74 KEVARR 79
E+ +
Sbjct: 82 NELQKL 87
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 38.4 bits (90), Expect = 0.002
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
+E E+E + + E EEEE +E++EE+++EE K AR W
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK--ARAW 327
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 38.1 bits (88), Expect = 0.002
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEE----------EEEEEEEEEEKKEEEEKE 50
++EE VE++ EK R I ++ +E EEEE EE + +EEEE E
Sbjct: 135 VDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDE 194
Query: 51 EEKEEEEEEKEEEEEEEEEEEEEK 74
E + E E EEEEEE E
Sbjct: 195 EVGSDSYGEGNRELNEEEEEEAEG 218
Score = 33.0 bits (75), Expect = 0.093
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE++E+ GRE+E E+ + E EEEEEE E ++ E + E E +K+
Sbjct: 178 EEERLEESDGREEEEDEEVGSDSYG-EGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKK 236
Query: 62 EEEEEEEEEEEEKEVARRWGVQK 84
+ EEEE EEE W +
Sbjct: 237 QGEEEEMEEEVINLFEIEWEEES 259
Score = 27.3 bits (60), Expect = 6.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+D + E ++++ EEE+ EEE + E EEE EE EE + +
Sbjct: 226 VDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 38.4 bits (89), Expect = 0.003
Identities = 14/44 (31%), Positives = 35/44 (79%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E EEE EEE+ EE++ +++ E+E+++ ++++E++E+E+++
Sbjct: 42 GKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 37.3 bits (86), Expect = 0.006
Identities = 12/45 (26%), Positives = 37/45 (82%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E EEE EEE+++E+ ++++ +E++++++++ +E++E+E++++
Sbjct: 44 EAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
Score = 36.9 bits (85), Expect = 0.008
Identities = 13/48 (27%), Positives = 39/48 (81%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
KE EEE EEE++ +E+++ +++++E++++ +++E++E+E++++ +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLH 90
Score = 36.5 bits (84), Expect = 0.009
Identities = 12/45 (26%), Positives = 38/45 (84%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
L ++ EEE EEE+++++++++ ++E E+++++ ++E++E+E+++
Sbjct: 41 LGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 36.1 bits (83), Expect = 0.013
Identities = 14/50 (28%), Positives = 35/50 (70%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+E EEE EEE +EE+ +++ +E+E++ +++++E++E+E++ +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Score = 35.7 bits (82), Expect = 0.016
Identities = 14/46 (30%), Positives = 36/46 (78%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K +E EEE EE+ ++EE +++ ++E+E+ ++++++E++E+E+ +
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 31.5 bits (71), Expect = 0.38
Identities = 12/33 (36%), Positives = 26/33 (78%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+K +E EEE EEE++ EE+++++++E+E+ +
Sbjct: 39 RKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDD 71
Score = 29.2 bits (65), Expect = 2.2
Identities = 12/75 (16%), Positives = 45/75 (60%), Gaps = 9/75 (12%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
M++E + G+E E E+E+++EE++++++ ++E++ +++ +E++E++
Sbjct: 32 MKKENAIRKLGKEAEEEAM---------EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Query: 61 EEEEEEEEEEEEEKE 75
++++ ++ +
Sbjct: 83 DDDDSTLHDDSSADD 97
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 37.8 bits (89), Expect = 0.003
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
L+ ++ E EEEE++ EEE+EEE+EEE EE E E
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.3 bits (85), Expect = 0.007
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E ++ E +EEEEE +EEEEEEEEEE EE E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.3 bits (85), Expect = 0.009
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ + E +EEE+E EEEE+EEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.9 bits (84), Expect = 0.012
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E ++ + E+EEEE E+EEEEEEEEE EE +
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 35.1 bits (82), Expect = 0.019
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ E EEEE+E E+EEEEEE+EE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.1 bits (82), Expect = 0.020
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ + EEE+EE +EEEEEE+EEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.8 bits (81), Expect = 0.024
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ E E+EEE+ EEEEE+EEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.4 bits (80), Expect = 0.041
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ + EE+EEE EEEEEE+EEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.6 bits (78), Expect = 0.058
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ E EE++EE E+EEE+EEEEE +E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.5 bits (70), Expect = 0.67
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ EEEE+E EEEEEEEEEEE E A
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
Score = 30.1 bits (69), Expect = 0.85
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E EEE+EE EEEEEEEEEE+
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
Score = 28.6 bits (65), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 51 EEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E ++ E EEEEEE EEEEE+E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEE 251
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/58 (20%), Positives = 19/58 (32%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ +L +F L E + E +KK+ + E E EEE
Sbjct: 98 PKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 34.7 bits (80), Expect = 0.018
Identities = 9/42 (21%), Positives = 12/42 (28%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E KK++ E E E EEE
Sbjct: 114 DGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 33.9 bits (78), Expect = 0.027
Identities = 9/45 (20%), Positives = 13/45 (28%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E + E K+++ E E E EEE
Sbjct: 110 LAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 32.0 bits (73), Expect = 0.15
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E + E +++K + E E E+E
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 31.6 bits (72), Expect = 0.17
Identities = 6/49 (12%), Positives = 12/49 (24%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L+ E + + K+++ E E E
Sbjct: 103 LELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAA 151
Score = 30.0 bits (68), Expect = 0.60
Identities = 9/51 (17%), Positives = 14/51 (27%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
L E + E ++K+ E E E +E A
Sbjct: 105 LFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 37.9 bits (89), Expect = 0.003
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+R L+ L + + EE+ E E+ ++ E+EEEE++E ++ +E E
Sbjct: 156 YDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 37.1 bits (87), Expect = 0.006
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+++E + R +E L EE+ + EE + +E++EEEE+E ++
Sbjct: 157 DRLENGERRLRE--------LIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Query: 64 EEEEEEEEEEKEVAR 78
+E E EK + +
Sbjct: 209 LAADESELPEKVLEK 223
Score = 30.5 bits (70), Expect = 0.87
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E+ + ++ E + + + E+ +EE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 30.1 bits (69), Expect = 1.0
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
EE + ++ E E + + +E+ EE+ E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 29.4 bits (67), Expect = 1.7
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EE + + E E + + +E+ +EE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 29.4 bits (67), Expect = 1.8
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EE + + E E + + +E EEE E E+ R
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGR 101
Score = 29.4 bits (67), Expect = 2.0
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
EE + ++ + E + + +E EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 29.0 bits (66), Expect = 2.5
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
EE + ++ E E + E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 29.0 bits (66), Expect = 2.8
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
EE + ++ E + + + +E+ E+E E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 28.6 bits (65), Expect = 3.7
Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
E EE +++E+EE++E+E + +E E E+ E+ + ++ + R+ Q+ +
Sbjct: 185 VGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRK--AQEKKV 242
Query: 88 AMNYDKLSRSLRYYYEKGIM 107
+L++ +Y + +
Sbjct: 243 E---GRLAQHKKYAKLREKL 259
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 36.9 bits (86), Expect = 0.004
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+T + EE EE E+ EE++ EEE+ EE+ E EEE++E E E + EE K+ R
Sbjct: 7 KTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Score = 35.4 bits (82), Expect = 0.012
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++E++ EE + E+ EE EK EE+E EEEE EEE E EEE++E E
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 35.0 bits (81), Expect = 0.018
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
D++++ EE + EE E+ E+ E+EE +EEE EE+ E EEE++E E +
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEEL 55
Score = 34.6 bits (80), Expect = 0.021
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+KE++ EE + EE ++ E+ +EEE EEEE E+E E EEE++E E E
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELE 49
Score = 32.3 bits (74), Expect = 0.15
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E EE E+ EEEE E++E EE+ E +EE++E E E + EE +++
Sbjct: 14 EETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63
Score = 29.2 bits (66), Expect = 1.3
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
++E+K EE EE EE E+ +EEE EEEE EEE + + + +
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 28.1 bits (63), Expect = 3.4
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE--------EEEK 74
+ +E+E EEEE EEE E +EE+++ E E + EE +++ + E E E+
Sbjct: 18 EAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERER 77
Query: 75 EVARRWGVQK 84
E A+++ ++K
Sbjct: 78 EEAKKYAIEK 87
Score = 27.3 bits (61), Expect = 6.1
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++E+K EE + EE E+ E+ EEEE EEEE E
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPE 33
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 37.9 bits (89), Expect = 0.004
Identities = 22/68 (32%), Positives = 44/68 (64%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+EK+ EL+ L++K +E +EE++ EE++++E+ + + + KEEEEEEE+EE+
Sbjct: 492 KEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEK 551
Query: 72 EEKEVARR 79
+++
Sbjct: 552 DKETEEDE 559
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 38.0 bits (88), Expect = 0.004
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE----- 68
E A L + E++ ++ EK E E + E+ E EEE E+ E+E +
Sbjct: 343 NEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402
Query: 69 EEEEEKEVARRWGVQKNR 86
+++E E R +KN
Sbjct: 403 CDDDELENHFRAADEKNS 420
Score = 32.7 bits (74), Expect = 0.20
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E+ E ++ + E++ ++ E+ E E EE E EEE E
Sbjct: 342 GNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVE 390
Score = 31.9 bits (72), Expect = 0.30
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
EK+ L ++ + EE E EEE E E+E ++ +++E E +E+
Sbjct: 361 EKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNS 420
Query: 73 EKEVARR 79
V R
Sbjct: 421 HLVVGFR 427
Score = 29.2 bits (65), Expect = 2.3
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE KD + + F L ++ E E EE + EEE ++ E E + ++
Sbjct: 343 NEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402
Query: 62 EEEEEEEE 69
+++E E
Sbjct: 403 CDDDELEN 410
Score = 28.4 bits (63), Expect = 4.7
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
+ E EE E E++ E+ ++E + ++E E +EK G + R
Sbjct: 372 KMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGFRNER 430
Score = 27.6 bits (61), Expect = 7.9
Identities = 13/65 (20%), Positives = 27/65 (41%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++ V +K + E E+ E EEE E+ E++ + ++ + +E E
Sbjct: 353 LDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHF 412
Query: 61 EEEEE 65
+E
Sbjct: 413 RAADE 417
Score = 27.3 bits (60), Expect = 9.9
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + L+ ++ EE E ++ + EK+ ++ E+ E E EE E
Sbjct: 329 IGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESE 384
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 37.9 bits (88), Expect = 0.004
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKE----EEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
+E E EE E ++ EE+E E E +E E + E E+ E +E +E +
Sbjct: 244 NEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDAR 303
Query: 84 KNRPAMNYDKLS 95
P +
Sbjct: 304 PATPFTELMEEV 315
Score = 36.7 bits (85), Expect = 0.008
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE-----EEEEEKKEEEEKEEEKEEEE 57
+V +D + A E D EE+ +++ E+ E +EE E +E EE+E
Sbjct: 205 FARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Query: 58 EEKEEEEEEEEEEE 71
E + E EE E +
Sbjct: 265 AEATDGEGEEGEMD 278
Score = 36.7 bits (85), Expect = 0.008
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE----EEEEEEKE 75
D EE+ +EE+ ++++ + E E EE E +E EE+E + E EE E
Sbjct: 225 DGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGE 276
Score = 35.6 bits (82), Expect = 0.019
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D E+ E EE E E EE E E + E E+ E + E E+ E +
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESD 289
Score = 35.2 bits (81), Expect = 0.026
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D+ EE+ +EE+ ++ + + ++ E EE E +E EE+E E + E
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGE 271
Score = 34.8 bits (80), Expect = 0.040
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ E EE + +E +E+E E + E EE E + E E+ E
Sbjct: 240 QPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSE 287
Score = 33.3 bits (76), Expect = 0.10
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
E+ ++ EE+ +E+ ++++ + E+ E +EE E +E EE+E E G
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEG 272
Score = 29.0 bits (65), Expect = 2.8
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+K +D + + F + + + + EE + EE+ +EE ++++
Sbjct: 185 EDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNN 244
Query: 63 EEEEEEEEEEEKE 75
E+ E EE E
Sbjct: 245 EDSEAGREESEGS 257
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 35.4 bits (82), Expect = 0.004
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEE 71
E+EEEEEE+EEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.008
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEE 72
+EEEEEE+EEEEEEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.010
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEE 59
EEE++EEEE+EEE+EE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.2 bits (79), Expect = 0.011
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEE 56
EEEEEE++EEEE+EEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.2 bits (79), Expect = 0.012
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEE 66
EE+EEE+EEEEEE+EE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.2 bits (79), Expect = 0.014
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEE 67
E+EEE+EEEEEE+EEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.015
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEE 73
EEEEEE+EEEEEEEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.015
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEE 70
EE+EEEEEE+EEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.015
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEE 55
EEEEEEE++EEEE+EE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.015
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEE 65
EEE+EEE+EEEEEE+E EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.015
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEE 68
+EEE+EEEEEE+EEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.5 bits (77), Expect = 0.020
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 51 EEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EEEE+EEEEEEEEEEE E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAM 97
Score = 33.1 bits (76), Expect = 0.030
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEE 73
EEEEE+EEEEEEEEEE EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 32.7 bits (75), Expect = 0.039
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEE 57
EEEEE++EEEE+EEE+ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.045
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEE 64
EEEE+EEE+EEEEEE+ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.046
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEE 69
EEE+EEEEEE+EEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.055
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEE 58
EEEE++EEEE+EEE+E EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.057
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKE 61
E++EEEE+EEE+EEEE E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.066
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEE 52
EEEEEEEEEE++EEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.8 bits (70), Expect = 0.19
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEE 63
+EEEE+EEE+EEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.4 bits (69), Expect = 0.24
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEE 62
++EEEE+EEE+EEEEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.7 bits (62), Expect = 2.5
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 28 DEKEEEEEEEEEEEEKKEE 46
+E+EEEEEEEEEEEE +EE
Sbjct: 77 EEEEEEEEEEEEEEESEEE 95
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 35.7 bits (83), Expect = 0.004
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEE 59
EEKKEEEE+EEEKEE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 35.3 bits (82), Expect = 0.006
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
EE+KEEE+EEEE+E+ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.9 bits (81), Expect = 0.007
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEE 71
EE+KEEEEEE+E+EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.9 bits (81), Expect = 0.008
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEE 73
EE++E+EEEEEE+EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 34.9 bits (81), Expect = 0.008
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+++EEEE+EEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.5 bits (80), Expect = 0.010
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EE++E++EEEE++EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.2 bits (79), Expect = 0.013
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
EEK+EE+EEEEE++E EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 33.8 bits (78), Expect = 0.017
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE+KEEEEEEEE+EE E+E A
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAA 98
Score = 33.4 bits (77), Expect = 0.025
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
EE+++EEE+EEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 33.0 bits (76), Expect = 0.034
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKE 50
EE++EEEEEEE+KEE E+E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 32.6 bits (75), Expect = 0.050
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEE 52
EE++EEEEE++E+EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 32.2 bits (74), Expect = 0.054
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEE 51
EE++EEEEEE+++EE +EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 30.7 bits (70), Expect = 0.21
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
++++EE+EEE+E+EE E+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.5 bits (67), Expect = 0.49
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+E++E+EEE+EE+EE +EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 37.6 bits (87), Expect = 0.004
Identities = 20/81 (24%), Positives = 49/81 (60%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ + G+E+E+ E + +++ +EE ++ + +++ +E++ +++E+E+EK+ EE
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Query: 67 EEEEEEEKEVARRWGVQKNRP 87
+ EEE+++E R K P
Sbjct: 159 DREEEKKRERVRAKSRPKKPP 179
Score = 36.8 bits (85), Expect = 0.008
Identities = 18/87 (20%), Positives = 46/87 (52%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E+ +K K + KE + + + +++ +E+E+E+E++ +E ++EEEK+ E +
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPA 88
++ +++ + +K R A
Sbjct: 173 SRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Score = 36.0 bits (83), Expect = 0.015
Identities = 24/80 (30%), Positives = 50/80 (62%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+KG K A + + + +E +EEE+E+E+ +++++++KE+ KEE ++ K +EE +E+
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Query: 69 EEEEEKEVARRWGVQKNRPA 88
+EKE + V++ R
Sbjct: 141 RPPKEKEKEKEKKVEEPRDR 160
Score = 35.6 bits (82), Expect = 0.018
Identities = 22/75 (29%), Positives = 45/75 (60%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
K K+ E + E ++K+++E+ +EE +++K +EE +E++ +E+EKE+E
Sbjct: 92 TKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Query: 64 EEEEEEEEEEKEVAR 78
++ EE + E+E R
Sbjct: 152 KKVEEPRDREEEKKR 166
Score = 35.6 bits (82), Expect = 0.022
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E+E+E+E+ +EE++KK+E+ KEE K+ + +E+ +E+ +E+E+EKE +
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Query: 89 M 89
Sbjct: 165 K 165
Score = 32.6 bits (74), Expect = 0.17
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEEK ++ EK++ E + +EE +E+ +EK++E+EK+ E+ + EE++
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPA 88
+ E + +K ++ +K P
Sbjct: 165 KRERVRAKSRPKKPPKKKPPNKKKEPP 191
Score = 31.4 bits (71), Expect = 0.38
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EE EK +EKE+ E + + ++ EEE++ E K +K +K+ ++KE
Sbjct: 134 KEEAKEKRPPKEKEKEKEKK----VEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Query: 62 EEEEEEEEEEEEKEVAR 78
EEE++ + + V
Sbjct: 190 PPEEEKQRQAAREAVKG 206
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 36.9 bits (85), Expect = 0.004
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+ + + L K +E +E + EEK+ +EE+EEE+ EEE ++EE + ++
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 35.0 bits (80), Expect = 0.022
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + + ++E+ K +E +E K EE++ +EE+EEEE EEE ++E
Sbjct: 190 VQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQE 236
Score = 34.6 bits (79), Expect = 0.032
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+++ + +E +E K EE++ +E++EEEE +EE ++EE + ++
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 34.2 bits (78), Expect = 0.037
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E+ + +E +E K EE++ +EE+EEEE E+E ++EE + ++
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 34.2 bits (78), Expect = 0.043
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q K ++E+ + +E +E + EE++ +EE+E+EE EEE ++EE +
Sbjct: 191 QVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGT 241
Score = 32.3 bits (73), Expect = 0.19
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K+E+ + +E ++ + E+++ +EE+EEE+ EEE ++EE + +
Sbjct: 198 KQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 31.6 bits (71), Expect = 0.34
Identities = 16/56 (28%), Positives = 36/56 (64%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
+V+ K ++++ +L+ +LQ +E++ +EE+EEEE +EE ++EE + ++
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 30.4 bits (68), Expect = 0.66
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+ + + ++++ + +E +E + E+++ +EE+EEEE E+E + G
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEG 238
Score = 29.6 bits (66), Expect = 1.4
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
LQ+ + + + ++++ K +E +E + +E++ +EE+EEEE +E A++
Sbjct: 180 LQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQ 235
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 37.3 bits (87), Expect = 0.004
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 27 LDEKEEEEEEE-EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D EE EE +E K + E+ +E+E++EE+ ++ EE ++ EE AR
Sbjct: 47 RDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARD 100
Score = 36.6 bits (85), Expect = 0.009
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EE EE +E + + EE EEE++E+++ ++ EE ++ +E +
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKAR 99
Score = 31.9 bits (73), Expect = 0.31
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
ER + ++L E+ +E + + E+ +EEE +EE + ++ E+ ++ EE
Sbjct: 42 ERGSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 30.8 bits (70), Expect = 0.74
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E +E + + ++ +EE+++E+++ ++ +E ++ EE + EV
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVL 103
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
R R + + + ++ + + EE +E++++EE + + EE ++ EE
Sbjct: 43 RGSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 27.7 bits (62), Expect = 6.5
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+E +EEE++EE++ + EE ++ EE + ++E
Sbjct: 67 FSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDE 101
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 36.3 bits (84), Expect = 0.005
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K +K EKE + E + + E EE E+E+E + E E+ E++E+EE +EEE+
Sbjct: 34 KKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93
Query: 65 EEEEEEEEEKEVARRWGVQKNRPAMNYD 92
EEE E+ +++EV +K MN +
Sbjct: 94 EEEAEDVKQQEVFSFK-RKKPFKEMNLE 120
Score = 35.6 bits (82), Expect = 0.011
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEEK D+ + + + + + EKE E E E+ E++E+EE +E+E+EEE ++
Sbjct: 40 EEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAED 99
Query: 62 EEEEEEEEEEEEKE 75
+++E + +K
Sbjct: 100 VKQQEVFSFKRKKP 113
Score = 34.0 bits (78), Expect = 0.035
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ F+ +++EEE+E +E K +EEE++ E EE E+EKE E E E+ E++E
Sbjct: 29 KTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKE 85
Score = 33.7 bits (77), Expect = 0.054
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
DEKEEE+E +E + KEEE+K E +E E+E++ E E E+ E++++ +K
Sbjct: 37 DEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEE 96
Query: 88 AMNYDK 93
A + +
Sbjct: 97 AEDVKQ 102
Score = 27.9 bits (62), Expect = 3.7
Identities = 15/62 (24%), Positives = 34/62 (54%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E K++ ++ E + E+E+ E++E+EE +EEE++EE ++ +++E
Sbjct: 46 SDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEV 105
Query: 61 EE 62
Sbjct: 106 FS 107
Score = 27.1 bits (60), Expect = 7.1
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ K E+ K +E E ++ E++E+EE +E+++EEE E+ K++E +
Sbjct: 50 VKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFK 109
Query: 62 EEEEEEEEEEEEK 74
++ +E EEK
Sbjct: 110 RKKPFKEMNLEEK 122
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 37.6 bits (87), Expect = 0.005
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EE+ K + + ER EKE ++ E+E ++EK+E EE E+E +E E ++
Sbjct: 293 AKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKR 352
Query: 61 EEEEEEEEEEEEEKEVARR 79
E EEEEEE+ E+ +E +
Sbjct: 353 EAEEEEEEQLEKLQEKLEQ 371
Score = 37.6 bits (87), Expect = 0.005
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E++ E++K R K+ E +L EKE EEEE+ E+ K EEE++E+ K +EEE +
Sbjct: 748 EKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRAL 807
Query: 63 EEEEEEEEEEEKEVARR 79
EEE +EE E +E
Sbjct: 808 EEELKEEAELLEEEQLL 824
Score = 36.1 bits (83), Expect = 0.016
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E +K+EK+ +EKE EL L+ L+ K E EEEEEE+ EK +E+ ++ E+E ++K
Sbjct: 323 ELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKL 382
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNR 86
E E + ++E ++
Sbjct: 383 ESERLSSAAKLKEEELELKNEEEKE 407
Score = 35.7 bits (82), Expect = 0.018
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EE++ + KE A L ++++E+ +EEE EE + +EE++ EK EEE +
Sbjct: 800 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER 859
Query: 62 EEEEEEEEEEEEKEVARR 79
EEE +EE ++ + +
Sbjct: 860 LEEEITKEELLQELLLKE 877
Score = 35.7 bits (82), Expect = 0.021
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ K ++++ R E ++ L ++ E+EE+ +EEE +E + +E+++ E+ E
Sbjct: 795 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 854
Query: 62 EEEEEEEEEEEEKE 75
EE E EEE ++E
Sbjct: 855 EELERLEEEITKEE 868
Score = 35.3 bits (81), Expect = 0.024
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEEK EK K +E+E + + EEE+ E+EE+ KEEE +E E +EE+K
Sbjct: 790 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKL 849
Query: 62 EEEEEEEEEEEEKEVARRWGVQKN 85
E+ EEE E E+E+ + +Q+
Sbjct: 850 EKLAEEELERLEEEITKEELLQEL 873
Score = 35.3 bits (81), Expect = 0.031
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+E++ DK +E + I + L KE+EEEEE+ +K+EEEE++ E +E+E
Sbjct: 719 EKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELA 778
Query: 62 EEEEEEEEEEEEKEV 76
EEEE+ E+ + E+E
Sbjct: 779 EEEEKTEKLKVEEEK 793
Score = 34.9 bits (80), Expect = 0.034
Identities = 16/74 (21%), Positives = 39/74 (52%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ K + + E ++ + + +E +E+EE + ++E E+E+E + +
Sbjct: 214 YQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLK 273
Query: 62 EEEEEEEEEEEEKE 75
E +EEE+E++ ++E
Sbjct: 274 ENKEEEKEKKLQEE 287
Score = 34.6 bits (79), Expect = 0.052
Identities = 28/73 (38%), Positives = 43/73 (58%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + + K EK + E + + K+E+EE EE E+E KE E K E +EEEEE+
Sbjct: 303 LLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQL 362
Query: 61 EEEEEEEEEEEEE 73
E+ +E+ E+ EEE
Sbjct: 363 EKLQEKLEQLEEE 375
Score = 34.6 bits (79), Expect = 0.052
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E + +E+E+ +L+ L KEEEE + E + ++ + + EE+ +E E+E
Sbjct: 265 EEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEL 324
Query: 61 EEEEEEEEEEEEEKE 75
++ E+E ++E+EE E
Sbjct: 325 KKLEKELKKEKEEIE 339
Score = 33.8 bits (77), Expect = 0.077
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++ K+ +++ + + ++E E+EEE + KE +E+E+EK+ +EEE
Sbjct: 230 LDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEEL 289
Query: 61 EEEEEEEEEEEEEKEVARR 79
+ +EEEE + E R
Sbjct: 290 KLLAKEEEELKSELLKLER 308
Score = 33.8 bits (77), Expect = 0.081
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EEE K E+ + EL + + EE+ +E E+E +K E+E K+E++E EE EK
Sbjct: 285 QEEELKLLAKEEEELK-SELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEK 343
Query: 61 EEEEEEEEEEEEEKEVA 77
E +E E + E EE+E
Sbjct: 344 ELKELEIKREAEEEEEE 360
Score = 33.8 bits (77), Expect = 0.086
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E + ++ R+++ IE +E+ + +E +EE+KE++ +EEE + +E+E
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Query: 62 EEEEEEEEEEEEKEVARR 79
E + E + E K
Sbjct: 298 ELKSELLKLERRKVDDEE 315
Score = 33.8 bits (77), Expect = 0.091
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EK E + +E ++ L+ L++K +E+EEEEE+ K+EEE+EE+ E +EKE
Sbjct: 718 LEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKEL 777
Query: 63 EEEEEEEEEEEKE 75
EEEE+ E+ + E
Sbjct: 778 AEEEEKTEKLKVE 790
Score = 33.8 bits (77), Expect = 0.094
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E K+K +E ++ ++ E++ + +EEE ++E +E+ E EEE+ E
Sbjct: 767 KSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 826
Query: 62 EEEEEEEEEEEEKEVA 77
+EE+ +EEE EE +
Sbjct: 827 QEEKIKEEELEELALE 842
Score = 33.4 bits (76), Expect = 0.11
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E + E+ E + + + +E+ + +EE E +E+EE
Sbjct: 933 KYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYN 992
Query: 61 EEEEEEEEEEEEEKEVAR 78
++E ++E EEE+KE+ R
Sbjct: 993 KDELKKERLEEEKKELLR 1010
Score = 33.0 bits (75), Expect = 0.13
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E +++ + E+E E + +EK + +EEE E++ +EE E +EE+ +
Sbjct: 767 KSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 826
Query: 61 EEEEEEEEEEEEEKEVA 77
+EE+ +EEE EE
Sbjct: 827 QEEKIKEEELEELALEL 843
Score = 33.0 bits (75), Expect = 0.15
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+ K + + KE+ L LD + EE + +E +E++E E ++E EK
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263
Query: 61 EEEEEEEE-----EEEEEKEVARRWGVQK 84
EEE + EEE+EK++
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLL 292
Score = 32.6 bits (74), Expect = 0.18
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EK E+++ ++ E + +++E EEEE+ E+ K EEEKEE+ + +EEE
Sbjct: 746 IKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELR 805
Query: 62 EEEEEEEEEEEEKE 75
EEE +EE E E
Sbjct: 806 ALEEELKEEAELLE 819
Score = 32.6 bits (74), Expect = 0.18
Identities = 28/74 (37%), Positives = 44/74 (59%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ KVE++K + + E L+ ++E E EEE+ ++EE+ KEEE EE E +
Sbjct: 785 EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 844
Query: 62 EEEEEEEEEEEEKE 75
EE++ E+ EEE E
Sbjct: 845 EEQKLEKLAEEELE 858
Score = 32.6 bits (74), Expect = 0.20
Identities = 22/77 (28%), Positives = 43/77 (55%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
++ E+ + ++E E I Q L E +EEE+E++ +EE+ + KEEE+ + E K
Sbjct: 247 LRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 306
Query: 62 EEEEEEEEEEEEKEVAR 78
E + ++EE+ ++
Sbjct: 307 ERRKVDDEEKLKESEKE 323
Score = 32.6 bits (74), Expect = 0.20
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E R + L + EE E E EE + +E K +E+ +K E + +E+ E +E
Sbjct: 165 GSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Query: 76 VARR 79
Sbjct: 225 ENLL 228
Score = 32.6 bits (74), Expect = 0.23
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EEE + + EKE IE RI + + + E E EE E+ +E+EKEE+ +EEEEE+
Sbjct: 903 LEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEER 962
Query: 61 EEEEEEEEEEEEEKEV 76
+ +EE +
Sbjct: 963 NKRLLLAKEELGNVNL 978
Score = 32.2 bits (73), Expect = 0.24
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+ K+K E+E++ + + + +E+E EEE+K E+ K EE++EE+ +
Sbjct: 740 KLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKA 799
Query: 61 EEEEEEEEEEEEEKEVAR 78
+EEE EEE ++E
Sbjct: 800 QEEELRALEEELKEEAEL 817
Score = 32.2 bits (73), Expect = 0.29
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EK ++ + E+ + L +EEE EEE +++ E +EE+ E+EEK
Sbjct: 772 LKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 831
Query: 62 EEEEEEEEEEEEKEVARR 79
+EEE EE E KE +
Sbjct: 832 KEEELEELALELKEEQKL 849
Score = 31.9 bits (72), Expect = 0.33
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E + +++EEEE + K+E E EEKEE ++E ++
Sbjct: 939 EELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKK 998
Query: 72 EEKEVARR 79
E E ++
Sbjct: 999 ERLEEEKK 1006
Score = 31.9 bits (72), Expect = 0.35
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE+ K +E E L+ +EKEE+ + +EEE EEE KEE + EEE+
Sbjct: 765 EEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 824
Query: 62 EEEEEEEEEEEEKEVA 77
E+EE+ +EEE +E+A
Sbjct: 825 IEQEEKIKEEELEELA 840
Score = 31.1 bits (70), Expect = 0.63
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE EK+K + + E R L ++E E +E+EE+ + E ++E E
Sbjct: 943 LEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLE 1002
Query: 62 EEEEEEEEEEEEKEVARR 79
EE++E E E+ R
Sbjct: 1003 EEKKELLREIIEETCQRF 1020
Score = 30.7 bits (69), Expect = 0.74
Identities = 17/80 (21%), Positives = 37/80 (46%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E E +++ K L E+++EE + EE E+ E ++ + EE+EE +
Sbjct: 396 EELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELE 455
Query: 61 EEEEEEEEEEEEEKEVARRW 80
++ + +++ E K+
Sbjct: 456 KQALKLLKDKLELKKSEDLL 475
Score = 30.7 bits (69), Expect = 0.84
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE ++ +++ E + L+ +E+EE+ E +E+E EEEEK E+ + EEE++E
Sbjct: 736 NEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEE 795
Query: 62 EEEEEEEEEEEEKE 75
+ + +EEE +E
Sbjct: 796 KLKAQEEELRALEE 809
Score = 30.7 bits (69), Expect = 0.93
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+E E+++ EK + E + E+E EEE +EE + EE++ E+EE+ K
Sbjct: 773 KEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIK 832
Query: 61 EEEEEEEEEEEEEKEVA 77
EEE EE E +E++
Sbjct: 833 EEELEELALELKEEQKL 849
Score = 30.3 bits (68), Expect = 0.96
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++ E+++ + + KE+A + + Q ++ E EEE + K EE+ + +E ++
Sbjct: 191 IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDE 250
Query: 61 EEEEEEEEEEEEEKE 75
+EE E ++E E++E
Sbjct: 251 QEEIESSKQELEKEE 265
Score = 29.2 bits (65), Expect = 2.3
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + EK K EKE + + +E EE E+E +E E K+E EE+EEE+ E+ +EK
Sbjct: 309 RKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEK 368
Query: 61 EEEEEEEEEEEEEKEVARR 79
E+ EEE +++ E R
Sbjct: 369 LEQLEEELLAKKKLESERL 387
Score = 28.8 bits (64), Expect = 2.9
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
++ +E+ + + + LQ L KE+ ++ E + K++ E +EE + K
Sbjct: 176 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKL 235
Query: 62 EEEEEEEEEEEEKE 75
EE + +E ++
Sbjct: 236 NEERIDLLQELLRD 249
Score = 28.8 bits (64), Expect = 3.0
Identities = 21/74 (28%), Positives = 30/74 (40%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E D+ ++E E +EE E EEKEE ++E +KE
Sbjct: 940 ELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKE 999
Query: 62 EEEEEEEEEEEEKE 75
EEE++E E
Sbjct: 1000 RLEEEKKELLREII 1013
Score = 28.8 bits (64), Expect = 3.6
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEE--EEEEEEEEEKKEEEEKEEEKEEEEEE 59
E+EK E +K E+ER L + + L E EE+EE ++E K+E EEE++E
Sbjct: 948 EKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKE 1007
Query: 60 KEEEEEEEEEEEEEKEVARRWGVQKN 85
E EE + ++ + + +
Sbjct: 1008 LLREIIEETCQRFKEFLELFVSINRG 1033
Score = 28.4 bits (63), Expect = 3.9
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EE + E + K A E +++ E+ EEE +KK E E+ + +EE+
Sbjct: 338 IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 397
Query: 61 EEEEEEEEEEEEEKEVARR 79
E + EEE+E +
Sbjct: 398 LELKNEEEKEAKLLLELSE 416
Score = 28.4 bits (63), Expect = 4.0
Identities = 15/74 (20%), Positives = 36/74 (48%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++ +K++ ++ E L E+ + +E + +E+ KK E + +++ E EE+
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Query: 62 EEEEEEEEEEEEKE 75
+ + EE+
Sbjct: 227 LLYLDYLKLNEERI 240
Score = 28.4 bits (63), Expect = 4.9
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E +K++ +K ++ + K E++ +E+EEE+++ K+EE+EEE+ E
Sbjct: 712 ELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELS 771
Query: 62 EEEEEEEEEEEEKE 75
+E+E EEEE+ E
Sbjct: 772 LKEKELAEEEEKTE 785
Score = 28.0 bits (62), Expect = 6.7
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
L+ +E E+ +++E K+ E+ E E + EE + +E + +E+ + A +
Sbjct: 157 LEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL 216
Query: 84 K 84
K
Sbjct: 217 K 217
Score = 27.2 bits (60), Expect = 9.2
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEE---KKEEEEKEEEKEEEE 57
+ EEK + + R E AI L + +E EE +E+E+EE ++EEE + +E
Sbjct: 912 LLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKE 971
Query: 58 EEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSR 96
E E EE++E + ++K R +L R
Sbjct: 972 ELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLR 1010
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 35.7 bits (83), Expect = 0.005
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
KE+ + E+++EE+K E E+ + EE+ E E E+ E+E EE E E+ARR
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARR 68
Score = 32.2 bits (74), Expect = 0.075
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++EE++ E E+ + EE+ E E E+ E+E EE E E E + E
Sbjct: 26 KKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+ E+++EE++ E ++ + E++ E E ++ E+E EE E E + +K
Sbjct: 22 AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKK 76
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 37.0 bits (85), Expect = 0.006
Identities = 20/55 (36%), Positives = 40/55 (72%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+EEE+E+ EE EE +E E EEE +++E+ ++++E+E + E +E E+A + +++
Sbjct: 108 EEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEE 162
Score = 35.4 bits (81), Expect = 0.022
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 13 EKERAIELRIFLQTLDEKEEE-EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ E +EL + +EE ++EEEE+E EE E+ EE E EEE +++E+ E+++E
Sbjct: 83 DNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDE 142
Query: 72 EEKE 75
+E +
Sbjct: 143 KESD 146
Score = 31.6 bits (71), Expect = 0.35
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
++++ EE EE EE E EEE ++E E+++EKE + E +E E
Sbjct: 111 EDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENE 153
Score = 28.1 bits (62), Expect = 4.6
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE+ + + E E E+ E+ EE E EEE + E+ EK++EKE + E E
Sbjct: 100 EEERGTQKEEEEDEDVEEI--------EEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
Query: 62 EEEEEEEEEEEEKE 75
E E EE +
Sbjct: 152 NELAGEYIIEEVDD 165
Score = 28.1 bits (62), Expect = 4.8
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EEE+ ++E+EE+++ EE E+ EE E EEE ++ E + +
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEK 139
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 37.1 bits (87), Expect = 0.007
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E+E E++ EE E KE E+ +EE EE++E+ +EEE++ EE E++
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 36.3 bits (85), Expect = 0.014
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKE---EEEKEEEKEEEEEEKEEEEEEEEE-- 69
EL L++K EE E +E EK + EE+KE+ +EEE++ EE E+E ++
Sbjct: 523 ASLEELER---ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAI 579
Query: 70 EEEEKEVAR 78
+E +KE
Sbjct: 580 KEAKKEADE 588
Score = 35.2 bits (82), Expect = 0.028
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEE-EEKKEEEEKEEEKEEEEEEK 60
++EK+ + +E EL + + +E E+ +EE EEKKE+ ++EE+K EE EK
Sbjct: 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Query: 61 EEEEEEEEEEEEEKEVARR 79
E ++ +E ++E E+ +
Sbjct: 574 EAQQAIKEAKKEADEIIKE 592
Score = 28.3 bits (64), Expect = 4.5
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 2 EEEKVEKDKGREKERAI-ELRIFLQTLDEKEEEEEEEEEEEEKKEEEE-----KEEEKEE 55
E E+ + K E E + E + L+EK+E+ +EEE++ ++ E+E KE +KE
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586
Query: 56 EEEEKEEEEEEEEEEEEEKE 75
+E KE + ++ K
Sbjct: 587 DEIIKELRQLQKGGYASVKA 606
Score = 27.5 bits (62), Expect = 7.7
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++ EK K +E+ +L+ L E+ E+E ++ +E KKE +E +E + ++
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600
Query: 61 EEEEEEEEEEEEEKEVA 77
+ E E K +
Sbjct: 601 YASVKAHELIEARKRLN 617
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 36.9 bits (86), Expect = 0.007
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KE +L L L EEEEE E +EK+EE + E+E + +E E++ E
Sbjct: 169 KEELDQLSKKLAELK-AEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLE 227
Query: 74 KEVAR 78
E +
Sbjct: 228 FEREK 232
Score = 30.8 bits (70), Expect = 0.77
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE--EEKE 61
E++ E +E + + E E E+EE +K EE+ ++E + + E E+K
Sbjct: 199 EELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKL 258
Query: 62 EEEEEEEEEEEEKE 75
+ E + E ++E
Sbjct: 259 KNELALQAIELQRE 272
Score = 27.3 bits (61), Expect = 7.8
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 2 EEEKVEKDKGREKERAIELRI--FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
K+E++ E + ++EE ++ EE+ ++E E + E E++ +
Sbjct: 201 LLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKN 260
Query: 60 KEEEEEEEEEEEEEKEVA 77
+ + E + E KE+
Sbjct: 261 ELALQAIELQREFNKEIK 278
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 36.7 bits (85), Expect = 0.007
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+L E + EE + +E+ E +E++E E++EE +EE E++++V ++ +K
Sbjct: 309 PSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
Query: 85 NRP-AMNYDKL 94
P + N+ +L
Sbjct: 369 VNPVSNNFRRL 379
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
R + L E +EEE ++E + E E EE EE+ + + +E
Sbjct: 230 RPVGKGLSELVQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 36.7 bits (85), Expect = 0.007
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
T+DE E +E+ ++ EE+EEE+EEEEEE E E EE EV
Sbjct: 382 TIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEV 432
Score = 35.2 bits (81), Expect = 0.025
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
ELR FL+ EK E EEE++EEEE+EEE E E EE
Sbjct: 385 ELREFLK---EKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 34.0 bits (78), Expect = 0.060
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEE---EKEEEEEEKEEEEEEEEEEEEEKEVA 77
D+ EE+ +E ++ +EK E+ EEEE+EEEEEEEE E E +
Sbjct: 372 DKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPME 424
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 35.8 bits (83), Expect = 0.008
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
D+ EE+EE EE+E+ + +E+E + ++E+++E + EEE+ +E
Sbjct: 8 DDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEV 58
Score = 35.4 bits (82), Expect = 0.011
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE-----KEEEEEEEEEEEEEKEVAR 78
L E++E++E +EEE ++E++EE + EEE+ +EEE + E E E ++E +
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFEK 72
Score = 35.0 bits (81), Expect = 0.013
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
E ++ EE+EE +E+E+ E EEE + ++E++EE + EEE+ R + +
Sbjct: 6 ESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVD 59
Score = 34.3 bits (79), Expect = 0.025
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+++E EE+E++E +EE + +++++EE + EEE+ +EEE +
Sbjct: 8 DDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVD 59
Score = 33.1 bits (76), Expect = 0.058
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ + EE+EE EE++ +E EEE + ++E++EE + EEE+
Sbjct: 6 ESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVT 52
Score = 32.7 bits (75), Expect = 0.075
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E ++ EE+EE +++E+++ ++EE + +E++EE + EEE+ V R
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTR 53
Score = 27.0 bits (60), Expect = 7.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E + EE EE EE+E+++ +EEE + ++E++
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQD 39
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 36.8 bits (85), Expect = 0.008
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 28 DEKEEEE-------------EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE----EEEE 70
D++EEEE EEE E E E EKE +++E E + + +EEE +E
Sbjct: 471 DDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKEIT 530
Query: 71 EEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 111
EEE +A+ V+ + D LS S ++Y IM V+
Sbjct: 531 EEENVLAK--AVESKTSITSSD-LSESQQFYPPGRIMHIVS 568
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 36.6 bits (85), Expect = 0.009
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
K A ++F + LDEK E ++ ++ E +++ EKE +K E + EK+E+E EE E+
Sbjct: 256 PLKAYADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKA 315
Query: 72 EEKE 75
E+
Sbjct: 316 AEEL 319
Score = 36.6 bits (85), Expect = 0.010
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE---EKEEEKEEEE 57
EE K+E DK + R F + K + + + E KE E + E+
Sbjct: 348 NEEIKIELDK-SKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKA 406
Query: 58 EEKEEEEEEEEEEEEEKEVARRWGVQKNRPAM 89
E K+ EE EE EE + + +K +
Sbjct: 407 EGKKAIEEIREELIEEGLLKSKKKKRKKKEWF 438
Score = 30.8 bits (70), Expect = 0.60
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+K +K KG + +L + + E + E+ E KK EE EE EE K
Sbjct: 367 RYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
Query: 61 EEEEEEEEEEEEEK 74
++++ +++E EK
Sbjct: 427 SKKKKRKKKEWFEK 440
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 36.8 bits (85), Expect = 0.009
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
R L++++ EE ++ E E+E+ ++++ E E+EE+ + E E +E +E E R
Sbjct: 191 REMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDR 249
Score = 36.5 bits (84), Expect = 0.010
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE----EEEEEE 67
RE R++EL + + + E E+EE+ ++++ E E+EE+ E E E +E +E E
Sbjct: 191 REMLRSMELA---EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEAT 247
Query: 68 EEEEEEKE 75
+ E E E
Sbjct: 248 DRESESGE 255
Score = 36.1 bits (83), Expect = 0.015
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
D+ E E+EE+ ++++ E E++E+ + E E ++ +E E + E E VQ
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQ 260
Score = 33.4 bits (76), Expect = 0.12
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EE + D+ E E+ +E+ E E E +E +E E + E E EEE
Sbjct: 211 DEEDGDDDQPTENEQ-----------EEQGEGEGEGQEGSAPQESEATDRESESGEEEMV 259
Query: 62 EEEEEEEEEEEEKE 75
+ ++++ +E + +
Sbjct: 260 QSDQDDLPDESDDD 273
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 37.0 bits (86), Expect = 0.009
Identities = 34/77 (44%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 1 MEEEKVEKDK-GREKERAI-ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+EEE + K E R I LR L L E E E+ EE + KE E E E EE EE
Sbjct: 710 LEEELEQLRKELEELSRQISALRKDLARL-EAEVEQLEERIAQLSKELTELEAEIEELEE 768
Query: 59 EKEEEEEEEEEEEEEKE 75
EE EEE E E E E
Sbjct: 769 RLEEAEEELAEAEAEIE 785
Score = 35.8 bits (83), Expect = 0.022
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E ++E+ K +ER L L+ + EE E + EE E K +E EE E EE+ +E
Sbjct: 296 EISRLEQQKQILRER-------LANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPA 88
+EE E E E +E+ ++R
Sbjct: 349 LKEELESLEAELEELEAELEELESRLE 375
Score = 35.4 bits (82), Expect = 0.029
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ + R +EL + + L+E EE EE +EE ++ EEE +E E +E E++ EE E E
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
Query: 72 EEKEVA 77
E+E+
Sbjct: 279 LEEEIE 284
Score = 33.1 bits (76), Expect = 0.12
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 8 KDKGREKERAI---ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K + RE E A+ L + L+E +EE +E EEE E+ E +E E++ EE E E
Sbjct: 219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
Query: 65 EEEEEEEEEKEV 76
EEE EE +KE+
Sbjct: 279 LEEEIEELQKEL 290
Score = 32.7 bits (75), Expect = 0.17
Identities = 25/77 (32%), Positives = 36/77 (46%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE + E ++ R++ + +I D E E E+ EE + ++ E E E EE E
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
Query: 62 EEEEEEEEEEEEKEVAR 78
E EE EEE E E
Sbjct: 768 ERLEEAEEELAEAEAEI 784
Score = 32.7 bits (75), Expect = 0.21
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E++E+ + + EL ++ L+E+ EE EEE E E + EE + + ++ +EE K
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSR 96
E +E E + + R +++
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAA 835
Score = 31.6 bits (72), Expect = 0.44
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EEK+E+ + + E L + L+E EEE E+ +E E+ + K+ E E
Sbjct: 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
Query: 63 EEEEEEEEEEEKEVAR 78
E+ EE + KE+
Sbjct: 743 EQLEERIAQLSKELTE 758
Score = 31.2 bits (71), Expect = 0.64
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E++E+ +E+ EL + L E +E EE EEE E+ +E +E ++ K+
Sbjct: 678 EIEELEEKIEELEEKIAELE---KALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 62 EEEEEEEEEEEEKEVARR 79
E E E+ E+ +A+
Sbjct: 735 LARLEAEVEQLEERIAQL 752
Score = 30.8 bits (70), Expect = 0.73
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E ++E+ + + ++ EL+ + LDE E EE E + E+ E+
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
Query: 63 EEEEEEEEEEEKEVAR 78
E+ EE+ EE +++
Sbjct: 841 EDLEEQIEELSEDIES 856
Score = 30.8 bits (70), Expect = 0.77
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ + + + +E RI + + E E E EE EE EE EEE E E E EE
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL---EEAEEELAEAEAEIEE 786
Query: 63 EEEEEEEEEEEKEVARR 79
E + E+ +EE + R
Sbjct: 787 LEAQIEQLKEELKALRE 803
Score = 30.4 bits (69), Expect = 0.98
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE + + D+ E+ +E ++ + + E E EE E E +E E + EE EE+ E
Sbjct: 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
Query: 62 EEEEEEEEEEE 72
+ + E +
Sbjct: 386 SKVAQLELQIA 396
Score = 30.0 bits (68), Expect = 1.2
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE--------EEEEEKKEEEEKEEEKEE 55
+ + + + L L E+ E E E+ EE+ EE ++ E
Sbjct: 799 KALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
Query: 56 EEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN--YDKLSRSLR 99
E E+ EE EE E E E + R +++ + ++LS LR
Sbjct: 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
Score = 30.0 bits (68), Expect = 1.4
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEE---EEEEEEEEKKEEEEKEEEKEEEEEEK 60
E++ + + +E +L LDE EE EE+ EE +++ E + E +E E E +
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
Query: 61 EEEEEEEEEEEEEKEVARR 79
E E EE EE+ + + +
Sbjct: 369 ELESRLEELEEQLETLRSK 387
Score = 29.3 bits (66), Expect = 2.3
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
ER E+ + ++E EE+ E E+ + +E +E E+E E+ KE EE + K
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733
Query: 75 EVAR 78
++AR
Sbjct: 734 DLAR 737
Score = 28.9 bits (65), Expect = 2.8
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+++E+ + ++ EL + + ++ E E E+ EE + KE E E E
Sbjct: 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
Query: 63 EEEEEEEEEEEKEVAR 78
EE EE EE E+E+A
Sbjct: 764 EELEERLEEAEEELAE 779
Score = 28.9 bits (65), Expect = 3.0
Identities = 18/68 (26%), Positives = 25/68 (36%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ E E L E+ EE EE E E + E+ +E + E EE EE
Sbjct: 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
Query: 72 EEKEVARR 79
E +
Sbjct: 905 ELESKRSE 912
Score = 28.9 bits (65), Expect = 3.3
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 2 EEEKVEKD--KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E ++E R +E EL + L E EEE EE E ++ EE+ +E E E E
Sbjct: 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
Query: 60 KEEEEEEEEEEEEEKEVAR 78
+E EE ++E E++R
Sbjct: 281 EEIEELQKELYALANEISR 299
Score = 28.1 bits (63), Expect = 5.8
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE--EEEEEKKEEEEKEEEKEEEEEEKE 61
E +E+ E L ++ L+E EE E E E+ EE E EE
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
Query: 62 EEEEEEEEEEEEKE 75
EE E E + E
Sbjct: 901 EELRELESKRSELR 914
Score = 28.1 bits (63), Expect = 6.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEE-----EEEEEEEEEKKEEEEKEEEKEEE 56
+ E++E + + EL L L+EK EE E E E EE + E E+ E + EE
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
Query: 57 EEEKEEEEEEEEEEEEEKE 75
EE+ E + + E +
Sbjct: 377 LEEQLETLRSKVAQLELQI 395
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 36.5 bits (85), Expect = 0.010
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ EEE E+ ++ E++EE+++ E+ EE +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLE 303
Score = 35.8 bits (83), Expect = 0.017
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ EEE E++ + E+E+E+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 35.0 bits (81), Expect = 0.032
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ EEE ++++ E+EE++++ E+ EE E R
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVR 306
Score = 34.6 bits (80), Expect = 0.037
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ EEE E+ ++ E+EEE+ + E+ EE
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 34.6 bits (80), Expect = 0.042
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ EEE E +++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 34.6 bits (80), Expect = 0.044
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
L + EEE E++ + ++EEE++ E+ EE
Sbjct: 256 TRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSR 96
+ EEE E++ + E+EEE+++ E ++ R A+ D L+R
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVRAALPPDLLAR 316
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 34.6 bits (80), Expect = 0.010
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K EE E + EEE E+EEE E E+EE E+
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEEL 55
Score = 31.5 bits (72), Expect = 0.15
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
L + EE E E E++ EEEEE E E+EE EE +
Sbjct: 11 LAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
Score = 30.3 bits (69), Expect = 0.28
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE E E EE+ EEEEE E E++E+
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELL 52
Score = 30.3 bits (69), Expect = 0.36
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EE E E EE+ EEEEE + E+EE EE +
Sbjct: 14 RAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLP 58
Score = 27.7 bits (62), Expect = 3.1
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ EEE EEE+E E E+EE +E + + + + +
Sbjct: 22 AETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSDFSA 71
Score = 27.3 bits (61), Expect = 3.6
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E E EEE E+EEE E E+EE EE + + +
Sbjct: 16 EEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
Score = 27.3 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEE-EEEEEEEEEKEVAR 78
+ EE + E EEE EEEEE E E
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEE 50
Score = 26.9 bits (60), Expect = 4.9
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+K EE E E +EE E+E
Sbjct: 9 RKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEE 43
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 36.4 bits (85), Expect = 0.010
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
L E+EEEEEE EEEE + + + K+E+++ + +E ++ A+ VQ
Sbjct: 224 LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQP 281
Score = 31.0 bits (71), Expect = 0.61
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
EEEEEE++ EEE+ + E + ++E+++ R+ ++ +P
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 30.6 bits (70), Expect = 0.81
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
EEEEE++E EE+E + E + ++E+++ +R +K +N
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVN 278
Score = 29.4 bits (67), Expect = 1.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
I L +E+EEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 222 ILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQ 275
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 36.6 bits (85), Expect = 0.010
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 2 EEEKVEKDKGREK------ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE 55
EE +K+ GR K E+ E + + + +E++E +EEEE ++EEE + EK
Sbjct: 412 NEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVA 471
Query: 56 EEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
+ K E+ ++EEEEEE + W + +
Sbjct: 472 NKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKS 506
Score = 34.6 bits (80), Expect = 0.038
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E +K+E + + EE E E +EE +EEE EE +K V RR
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRR 423
Score = 34.3 bits (79), Expect = 0.063
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 18/85 (21%)
Query: 12 REKERAI-ELRIFLQTLDEKEEEEEEEEEEEEKKEE-----------------EEKEEEK 53
R+KE E+ + L+ +EE +EEE EE KK + K+E K
Sbjct: 385 RKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENK 444
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVAR 78
E +E+KE +EEEE E+EEE +V +
Sbjct: 445 NEFKEKKESDEEEELEDEEEAKVEK 469
Score = 32.3 bits (74), Expect = 0.24
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EK + K +KE E + ++ +E+E E+EEE + E+ + K EK ++EEE+E
Sbjct: 429 NGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEE 488
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRP 87
E +EE + V + Q ++
Sbjct: 489 ELDEENPWLKTTSSVGKSAKKQDSKK 514
Score = 28.5 bits (64), Expect = 4.4
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
EE +++ E K +E+E+E+ + EEE+E+++E++ + W ++K
Sbjct: 311 GEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRK 356
Score = 27.3 bits (61), Expect = 8.1
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EE++ + + + E LR L L E E++EE K + + +KEE + E
Sbjct: 335 EEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEI 394
Query: 61 EEEEEEEEEEEEEKE 75
EE E E EEE E
Sbjct: 395 EELRRELEGEEESDE 409
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 35.8 bits (83), Expect = 0.011
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
L++ E EEEE+ +EEE++ + + E+ K++ +E ++EE+EE
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEM 166
Score = 33.8 bits (78), Expect = 0.044
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+EEEE+ +EEE E+ K ++ ++K +E ++EE+EE A
Sbjct: 123 EREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAA 171
Score = 32.3 bits (74), Expect = 0.14
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E+ E EEEE+ +EE++E + + E+ +++ +E ++EE+E+ R
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 30.0 bits (68), Expect = 0.78
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ L E+ E EEEE+ +++E E + E+ +++ +E ++EE E R
Sbjct: 114 KQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
Score = 29.2 bits (66), Expect = 1.7
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E EEEE+ +E++ E K E+ + +++ +E ++EE++E+ R
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 36.5 bits (84), Expect = 0.011
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 23 FLQTLDEKEEEEEEEEEEE----------EKKEEEEKEE-----EKEEEEEEKEEEEEEE 67
FL + E +E EEE E E E+EE +E ++E E + +EE+ E
Sbjct: 922 FLMVGSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGE 981
Query: 68 EEEEEEKEVAR 78
+ +E E + A
Sbjct: 982 DWDELESKAAY 992
Score = 36.1 bits (83), Expect = 0.016
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+E+EE +E E E+E E + +EE+ ++ +E E + + + RR
Sbjct: 953 DEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
Score = 35.0 bits (80), Expect = 0.031
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ + E+EE +E E+ ++E E + EE+ E+ +E E + +
Sbjct: 949 SDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 34.2 bits (78), Expect = 0.062
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE--EEEEEEEEEEEKEVARRW 80
DE +E EEE E E ++E E +++EE +E E E+E E + ++E W
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDW 983
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 36.4 bits (85), Expect = 0.011
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ L E E +EE EE ++ +E E E +EE+ ++ E + E
Sbjct: 388 VEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFK 441
Score = 35.2 bits (82), Expect = 0.022
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
L ++ +EE EE E K+ E + +EE+ + E + E K +
Sbjct: 391 LLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEK 445
Score = 35.2 bits (82), Expect = 0.028
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+L+E EE E E +EE EE +E +E E E +EE+ + ++
Sbjct: 377 FSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLS 430
Score = 34.1 bits (79), Expect = 0.056
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EE VE+ + R KE + + + E + E + EK + E+ E+
Sbjct: 398 DEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQA 457
Query: 62 EEEEEEEEEEEEK 74
+E + E +EEK
Sbjct: 458 VDELIDIEGDEEK 470
Score = 33.7 bits (78), Expect = 0.077
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+E EE E +E + E +EE+ ++ E + E + EK +
Sbjct: 399 EETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGI 447
Score = 33.3 bits (77), Expect = 0.10
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE E E +EE EE + ++ E E +EE+ ++ + + R
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRE 437
Score = 30.2 bits (69), Expect = 1.0
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE +E + G ++E ELR KE E E +EEK ++ E + E +
Sbjct: 389 EELLEIE-GFDEETVEELR-----ERAKEALETEALAQEEKLADDLLSLEGLDRELAFKL 442
Query: 63 EEEEEEEEEEEKEVA 77
E+ + E+ E A
Sbjct: 443 AEKGIKTLEDLAEQA 457
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 34.4 bits (79), Expect = 0.011
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EE+ EEK+EE++KEEEKEEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.0 bits (78), Expect = 0.014
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEE 64
E+K EE++EE+K+EEE+E+EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 33.6 bits (77), Expect = 0.021
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEE 72
EE+ EE+EEEK++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 33.2 bits (76), Expect = 0.027
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+E+ +E+EEE+K+EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 33.2 bits (76), Expect = 0.028
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEE 55
EE+ EE+EEEKK+EEEKEEE+EE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.5 bits (74), Expect = 0.046
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEE 63
EEK EE+E+E++KEEE+EE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.1 bits (73), Expect = 0.080
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+++ EEKEEEK++EEE++EEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.7 bits (72), Expect = 0.11
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EEK EE+EE++++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.7 bits (72), Expect = 0.11
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE+ EEKEEE+++EEE+EEE+E A
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 31.7 bits (72), Expect = 0.11
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E+ EE++EE+++EEE+EEEE+E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEAL 99
Score = 31.3 bits (71), Expect = 0.13
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKE 54
EE+ EE+EEE+KKEEE++EEE+E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.19
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEE 68
EE+ EE++EE+++E+E+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.5 bits (69), Expect = 0.23
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEE 67
EE+ +E+E+E+++EE++EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 1.0
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE+ +++EEEK++E+E+EEEE+E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 1.2
Identities = 13/21 (61%), Positives = 20/21 (95%)
Query: 28 DEKEEEEEEEEEEEEKKEEEE 48
++ EE+EEE+++EEEK+EEEE
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEE 96
Score = 27.8 bits (62), Expect = 1.9
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 28 DEKEEEEEEEEEEEEKKEEEE 48
+E+EEE+++EEE+++EEEE
Sbjct: 77 KAEEKEEEKKKEEEKEEEEEE 97
Score = 27.5 bits (61), Expect = 3.0
Identities = 16/29 (55%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE+ E+KEEE+K+EE E+EEE+EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEE--EKEEEEEE 97
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 34.3 bits (79), Expect = 0.011
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E E +E +EEE++EE +EE +++
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 34.3 bits (79), Expect = 0.013
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E E E EEEEKEEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 28.5 bits (64), Expect = 1.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E + +E EEEE+EEE +E
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEE 97
Score = 28.5 bits (64), Expect = 1.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E E EEEE+EEE EE+
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEES 99
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 36.1 bits (83), Expect = 0.012
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYE 103
+ E EE+E+EEEEEEEEEE + V +R + + + S R++
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESITVPSRRHHSP 276
Score = 29.9 bits (67), Expect = 1.3
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 46 EEEKEEEKEEEEEEKEEEEEE 66
+ E E++EEEEE+EEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 2.1
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 28 DEKEEEEEEEEEEEEKKEEE 47
+ E EE+EEEEEEE++EEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 2.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Query: 26 TLDEKEEEEEEEEEEEE 42
+ E++EEEEEEEEEEE
Sbjct: 226 SESEEDEEEEEEEEEEE 242
Score = 28.4 bits (63), Expect = 3.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEE 48
+ E EE+EEEEEE++EEEE
Sbjct: 219 SSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 28.4 bits (63), Expect = 3.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 47 EEKEEEKEEEEEEKEEEEEEE 67
E +E+EEEE+EEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 28.4 bits (63), Expect = 3.9
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 45 EEEEKEEEKEEEEEEKEEEEE 65
+ + EE EEEEEE+EEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 28.0 bits (62), Expect = 5.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ E EE+EE++EEEE+EEE + EK +
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKA 260
Score = 27.2 bits (60), Expect = 9.0
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 31 EEEEEEEEEEEEKKEEEEKEE 51
+ E EE+EEE++EEEE+EE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 35.6 bits (82), Expect = 0.012
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+ R +E + + + L+E E+E EE E+E++ E+ +E+EK++E EE +EE EE
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 69 EEEE 72
EE E
Sbjct: 201 EELE 204
Score = 34.8 bits (80), Expect = 0.024
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E++E+ K + KE+ L + L+E E+E++ E+ E+KE++++ EE +EE EE
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 62 EEEE 65
EE E
Sbjct: 201 EELE 204
Score = 32.9 bits (75), Expect = 0.10
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
++ + + EE E+E EE E++K+ EK E++E+++E EE +EE EE E
Sbjct: 142 QERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLE 201
Query: 73 EKE 75
E E
Sbjct: 202 ELE 204
Score = 30.2 bits (68), Expect = 0.66
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE-----EEEEEKKEEEEKEEEKEEEE 57
+E +++ +KE L Q E+ + + +E EE E++ EE E E++ E+
Sbjct: 120 QEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKL 179
Query: 58 EEKEEEEEEEEEEEEEKE 75
E++E+++E EE +EE E
Sbjct: 180 LEEKEKKKELEELKEELE 197
Score = 26.8 bits (59), Expect = 8.9
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
+ K +K++ E E+ +E + L EK EE+E+++E E+ +EE +E +E E
Sbjct: 149 KFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 36.1 bits (83), Expect = 0.012
Identities = 19/75 (25%), Positives = 44/75 (58%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ + K E++R + + L K+ E+E ++ EK+ + +E++K+ EE EK+
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQA 127
Query: 63 EEEEEEEEEEEKEVA 77
+ E++++EE+ ++ A
Sbjct: 128 QLEQKQQEEQARKAA 142
Score = 35.7 bits (82), Expect = 0.017
Identities = 18/77 (23%), Positives = 41/77 (53%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+++ + E+ K +E+++ E L++K++EE+ + E+K++ E + K E K
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Query: 61 EEEEEEEEEEEEEKEVA 77
+ E +++ EE A
Sbjct: 163 LKAAAEAKKKAEEAAKA 179
Score = 32.2 bits (73), Expect = 0.23
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+++++EE+ EE + K+ E+E K+ E+E + +E++++ EE EK+ Q+
Sbjct: 80 QRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Score = 31.8 bits (72), Expect = 0.28
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+++K E K + A +L+ + K++ EE + EE K + E K++ E E +
Sbjct: 145 QKKKAEAAKAKAAAEAAKLKA---AAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAK 201
Query: 62 EEEEEEEEEEEEKEVA 77
E+ + E E K A
Sbjct: 202 AAAEKAKAEAEAKAKA 217
Score = 30.3 bits (68), Expect = 0.96
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ ++ ++ E++ +KKEE+ EE K ++ E+E ++ E+E + +E +
Sbjct: 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQK 118
Score = 30.3 bits (68), Expect = 1.1
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ K + ++ E A + + E +++ E E + E+ K E + + + EK+
Sbjct: 161 AKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKK 220
Query: 62 EEEEEEEEEEEEKEVA 77
E EE+ EK+ A
Sbjct: 221 AEAAAEEKAAAEKKKA 236
Score = 29.9 bits (67), Expect = 1.2
Identities = 13/66 (19%), Positives = 39/66 (59%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ K+ A + R+ + + +E++++ EE +K+ + +++++EE+ + E++++ E
Sbjct: 93 KPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAA 152
Query: 72 EEKEVA 77
+ K A
Sbjct: 153 KAKAAA 158
Score = 29.5 bits (66), Expect = 1.6
Identities = 16/77 (20%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+++ + E+ER +L + L +E++++ EE E++ + E++++EE+ + ++
Sbjct: 88 VAEELKPKQAAEQERLKQLEK--ERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQ 145
Query: 62 EEEEEEEEEEEEKEVAR 78
+++ E + + E A+
Sbjct: 146 KKKAEAAKAKAAAEAAK 162
Score = 28.0 bits (62), Expect = 5.0
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAM 89
KEE+ EE + ++ E+E ++ ++E + +E++++ EE E++ + ++ Q + A
Sbjct: 84 KEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA 143
Query: 90 NYDK 93
K
Sbjct: 144 EQKK 147
Score = 28.0 bits (62), Expect = 5.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE-----EEKEEEEEEKE 61
E+ K EKER +K+ EE E++ + E+K++EE+ E+K++ E K
Sbjct: 101 ERLKQLEKERLKAQE------QQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154
Query: 62 EEEEEEEEEEEEKEVARR 79
+ E + + E ++
Sbjct: 155 KAAAEAAKLKAAAEAKKK 172
Score = 28.0 bits (62), Expect = 5.3
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKL 94
+ ++ KK E+++++++E+ EE + ++ E+E ++ E R ++ + A +K
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQ 126
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 35.9 bits (83), Expect = 0.013
Identities = 13/56 (23%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE-KEVARR 79
E +++ E +EE EEE ++++ E ++ ++++E++++EE++ +E+ R
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKAR 119
Score = 30.5 bits (69), Expect = 0.69
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+EE EEE E+ + E K+ ++++E++++EE++ E + ++EV
Sbjct: 76 SNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDREV 123
Score = 27.8 bits (62), Expect = 5.5
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
L+ +E +++ E ++E EEE E+ + E ++ ++++++
Sbjct: 54 LKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQ 107
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 34.6 bits (80), Expect = 0.013
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++E+ K +ER EL L+ E + EEE ++EE E E+ E+ +++E E E
Sbjct: 48 EERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPE 107
Query: 63 EEEEEEEEEEEKE 75
+ EEE E
Sbjct: 108 PTVTDYEEEYIDE 120
Score = 31.5 bits (72), Expect = 0.16
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
++ E+ K +E+E IE R ++ ++E E++ +E +E K EE+ +++E+ E E E
Sbjct: 36 KKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTE 95
Query: 63 EEEEEEEEEEEKEVA 77
+ E++E E +
Sbjct: 96 DVEDDEWEGFPEPTV 110
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.2 bits (84), Expect = 0.013
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E +E K + +E+ EL ++ L ++ EE EE+ +E ++ +E+ +E K E E+
Sbjct: 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEY 305
Query: 62 EEEEEEEEEEEEKEVARRWGVQK 84
+E E E+ + G+++
Sbjct: 306 LDELREIEKRLSRLEEEINGIEE 328
Score = 31.2 bits (71), Expect = 0.55
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEE-EEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ +++EK +ER +E E ++ EK E+E +E EK +EE E+
Sbjct: 346 KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE 405
Query: 61 EEEEEEEEEEEEEKEVARR 79
E + E +KE+
Sbjct: 406 EISKITARIGELKKEIKEL 424
Score = 30.4 bits (69), Expect = 0.88
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
++ ++ R IE R L L+E+ EE +E E+KEE +E +K+ +E EK EE E
Sbjct: 301 FYEEYLDELREIEKR--LSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE 358
Query: 67 EEEEEEEK 74
E E E+
Sbjct: 359 ERHELYEE 366
Score = 29.6 bits (67), Expect = 1.8
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+EL+ + L+ +E+E ++ EEE +K EE E EK EE KE EE E++ EEE
Sbjct: 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661
Query: 75 EVARR 79
E R
Sbjct: 662 EELRE 666
Score = 29.6 bits (67), Expect = 1.9
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++E+ K + KE L + + EE + ++EE E K+ ++ E+E +E
Sbjct: 337 EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEEL 396
Query: 63 EEEEEEEEEEEKEVARRWGVQKNR 86
E+ +EE EEE ++ R G K
Sbjct: 397 EKAKEEIEEEISKITARIGELKKE 420
Score = 28.9 bits (65), Expect = 2.9
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEE--EEEEEEKKEEEEKEEEKEEEEEE 59
E ++EK R +E + ++ L+EKEE EE ++ +E +K EE EE E EE
Sbjct: 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA 367
Query: 60 KEEEEEEEEEEEEEKE 75
K ++EE E ++
Sbjct: 368 KAKKEELERLKKRLTG 383
Score = 28.9 bits (65), Expect = 3.2
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEE--EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ E I+L F + ++ E E+ EEE EE+ +E EE+EE EE +++ +E
Sbjct: 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL 350
Query: 71 EEEKEVARRW 80
E+ E
Sbjct: 351 EKRLEELEER 360
Score = 28.9 bits (65), Expect = 3.4
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+E E ++ +E+ +E + +++ EE+ E EE +E +++ EE EE+ +E +
Sbjct: 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLR 99
E +E+ EE + E + + +L +
Sbjct: 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
Score = 28.5 bits (64), Expect = 4.4
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+++E+ E + EL + L++ E+E +E EE +E+ EE EKE E E + K E
Sbjct: 199 EKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
Query: 63 E---------EEEEEEEEEEKEVARR 79
E EE ++E EE +E +
Sbjct: 259 EKIRELEERIEELKKEIEELEEKVKE 284
Score = 27.7 bits (62), Expect = 6.7
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E++ + + R +E EL + E+E EE EE E +E E EE E+ +
Sbjct: 630 KAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
Query: 61 EEEEEEEEEEEEEKE 75
EE ++ E+ +EE E
Sbjct: 690 EEIKKTLEKLKEELE 704
Score = 27.7 bits (62), Expect = 6.8
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++ E + KE+ EL L+ ++E E E EE EK E+E KE E+ +EE E+ E+
Sbjct: 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEK 245
Query: 64 EEEEEEEEEEKEVARRWGVQK 84
E E E + K + +++
Sbjct: 246 ELESLEGSKRKLEEKIRELEE 266
Score = 27.3 bits (61), Expect = 8.4
Identities = 26/74 (35%), Positives = 36/74 (48%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E+ EK+ + +E + L +++ EE +E EE EKK EE+ EE EE E
Sbjct: 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELS 672
Query: 62 EEEEEEEEEEEEKE 75
E E EE E
Sbjct: 673 RELAGLRAELEELE 686
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 36.1 bits (84), Expect = 0.013
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE- 73
ER ++L + +Q E ++ ++EEEE E+++ E++ + +++ EEE + E E
Sbjct: 209 ERLLKLDVEIQN--ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTI 266
Query: 74 KEVARR 79
KEV+ +
Sbjct: 267 KEVSEK 272
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 34.6 bits (80), Expect = 0.014
Identities = 9/43 (20%), Positives = 31/43 (72%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+K++++ + +++ ++ +++ +EE+ ++E++E+EE+EE
Sbjct: 87 FDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 32.3 bits (74), Expect = 0.092
Identities = 11/54 (20%), Positives = 32/54 (59%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
I+ I +++++ + +++ +++ ++ +EE+ EE++E+EE+EE
Sbjct: 76 IDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 31.9 bits (73), Expect = 0.098
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 27 LDEKEEEEEEEEEEEEKK--------EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+DE +EE EE+ +KK ++ ++ +++ ++E+ +EE++E+EE++E
Sbjct: 73 VDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/53 (20%), Positives = 31/53 (58%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE 54
+EE + ++ +K++ + +D+ +++ +EE+ +E++E EE++E
Sbjct: 77 DEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 36.0 bits (83), Expect = 0.014
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK-------------EEEEEEEEEEEE 72
+L EE + + ++ ++E+E E E +EE ++ ++ + + EEE
Sbjct: 536 SLRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEE 595
Query: 73 EKEVARR 79
E + +
Sbjct: 596 EAALKMK 602
Score = 32.1 bits (73), Expect = 0.25
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEE--------------EEKEEEKEEEEEEKEEEE 64
E RI L D E+E+E E E +E++++ ++ + K EEEE +
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKM 601
Query: 65 EEEEEEE 71
+ + E
Sbjct: 602 KMTDTSE 608
Score = 31.4 bits (71), Expect = 0.40
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEE----EKEEE-----EEEKEEEEEEEEEEEEEKE 75
+ +D ++ E+E+E E + +EE+++ K ++ K + EEEE + +
Sbjct: 543 ERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMK 602
Query: 76 V 76
+
Sbjct: 603 M 603
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 36.1 bits (84), Expect = 0.015
Identities = 25/73 (34%), Positives = 33/73 (45%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E+ K G E+ E + + E +EE EE E+E E EE KE K+ EE
Sbjct: 192 EVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLA 251
Query: 62 EEEEEEEEEEEEK 74
E E E E +
Sbjct: 252 LYEYLEIELERAE 264
Score = 33.4 bits (77), Expect = 0.10
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 4 EKVEKDKGREKERAIELRIFLQ---TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
K+ + E +LR +L L E++++ + EE K+ EE+ E+ E+E +E
Sbjct: 46 RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
Query: 61 EEE----EEEEEEEEEEKEVARRWG 81
EEE E E +E E+E E WG
Sbjct: 106 EEEISELENEIKELEQEIERLEPWG 130
Score = 31.1 bits (71), Expect = 0.63
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 9 DKGREKERAIELRIF----LQTLDE-------KEEEEEEEEEEEEKKE-EEEKEEEKEEE 56
K E EL+ L+ +E +E +EE EE E+E++ EE +E ++
Sbjct: 186 LKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKY 245
Query: 57 EEEKEEEEEEEEEEEEEKEVARR 79
EE E E E E E +
Sbjct: 246 LEELLALYEYLEIELERAEALSK 268
Score = 27.6 bits (62), Expect = 7.0
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 3 EEKVEKDKGREKERAIELRI----FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
E+ E+ + L L L + EE++K + EE ++ EE
Sbjct: 34 EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEE 93
Query: 59 EKEEEEEEEEEEEEEKE 75
E E+ E+E +E EEE
Sbjct: 94 ELEKIEKEIKELEEEIS 110
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 35.6 bits (82), Expect = 0.015
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
M E ++D+ E+ A+E R+ EE + +++E EE E ++E+E
Sbjct: 203 MTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEH 262
Query: 61 EEEEEEEEEEEE 72
E+ E+ E + E
Sbjct: 263 GEDSEDGETKPE 274
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 36.2 bits (84), Expect = 0.015
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
L F Q++ ++ EE E+ E+ E+ E +EE +++ ++ ++ E + +
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLE 510
Query: 79 RWGVQKNRPAMNYDKLSRSL 98
G+ + Y+KL L
Sbjct: 511 ELGINEE----TYEKLEALL 526
Score = 35.1 bits (81), Expect = 0.035
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+E + EE ++ KE E+ E+ ++ E+ E +EE +KEV
Sbjct: 445 EEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEV 493
Score = 33.9 bits (78), Expect = 0.078
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGV 82
L++L+E ++ +E +E EK E+ E+ E +EE ++E ++ +K +
Sbjct: 448 ILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYL 507
Score = 31.6 bits (72), Expect = 0.41
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE + K E + + L EE E+ E+ E+ E ++E +KE ++ K+
Sbjct: 444 EEEAILK----SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Query: 62 EEEEEE 67
E +
Sbjct: 500 IPEVDT 505
Score = 30.4 bits (69), Expect = 1.1
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDE-KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+ ++ +E +I I + L++ ++ E +EE ++E ++ +K E + +
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLE 510
Query: 61 EEEEEEEEEEEEEKEVARR 79
E EE E+ E +A++
Sbjct: 511 ELGINEETYEKLEALLAKK 529
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 35.8 bits (83), Expect = 0.016
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDE--KEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E + E ++ ER L I L E + +EEE E+E EEEE+ E E+
Sbjct: 365 ERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRI 424
Query: 60 KEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEK 104
K+ EE E EEE E+ R K +L R R +K
Sbjct: 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK 469
Score = 32.8 bits (75), Expect = 0.17
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEE---EEEEEEKKEEEEKEEEKEEEEEE 59
+ E+++ REKE E T+ EK ++ E E EEE E + + EE + E E+
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 60 KEEEEEEEEEEEEEKEVARR 79
E E E E +K R
Sbjct: 455 LESELERFRREVRDKVRKDR 474
Score = 31.2 bits (71), Expect = 0.59
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 3 EEKVEKDKGREKE---RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EE VE+ + E EL+ ++ L+ + E E ++ +K+ E + ++ E E
Sbjct: 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE 487
Query: 60 KEEEEEEEEEEEEEKEVAR 78
KE EE+++ EE E+++A
Sbjct: 488 KELEEKKKRVEELERKLAE 506
Score = 31.2 bits (71), Expect = 0.59
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEE--EEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EEE+ + +G E+E E+ ++ + + + EE E EEE E K+E EE + E E+ E E
Sbjct: 399 EEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458
Query: 60 KEE-EEEEEEEEEEEKEVARR 79
E E ++ +++E+ R
Sbjct: 459 LERFRREVRDKVRKDREIRAR 479
Score = 30.4 bits (69), Expect = 0.97
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 2 EEEKVEKDKGREKERAIE-LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EE K + E +R IE L L+ + ++ ++ E ++ + EKE EE++K
Sbjct: 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKK 495
Query: 61 EEEEEEEEEEEEEK 74
EE E + E K
Sbjct: 496 RVEELERKLAELRK 509
Score = 30.1 bits (68), Expect = 1.4
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 2 EEEKVEKDKGREKERAIE-LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E V + + ++ E +E L L + EE + E E+ E + E + E +++ +++
Sbjct: 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDR 474
Query: 61 EEEEEEEEEEEEEKEVAR 78
E + E EKE+
Sbjct: 475 EIRARDRRIERLEKELEE 492
Score = 28.5 bits (64), Expect = 3.9
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEE-EEEEEEKKEEEEKEEEKEEEEEEKE 61
E++++K + + E + L+E + E E+ E E E + E + K+ E ++
Sbjct: 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARD 480
Query: 62 EEEEE-----EEEEEEEKEVARR 79
E EE+++ +E+ R+
Sbjct: 481 RRIERLEKELEEKKKRVEELERK 503
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 35.8 bits (82), Expect = 0.016
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ + +E E ++E++++E E E KEE + ++ +E EE+EE++E E R
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENER 334
Score = 34.3 bits (78), Expect = 0.050
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
A E+ + +KE+++EE E E KEE + + E EE++E++E EE E E
Sbjct: 281 AAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337
Score = 33.5 bits (76), Expect = 0.088
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E ++E+++EE + E KEE + + +E EE+EE++E EE +
Sbjct: 284 IENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337
Score = 33.1 bits (75), Expect = 0.12
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E ++G +E ++ + E ++E+++EE E E ++E + + +E EE+EE+
Sbjct: 267 EGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEED 326
Query: 67 EEEEEEEKE 75
+E EE E+
Sbjct: 327 DENEENERH 335
Score = 32.8 bits (74), Expect = 0.16
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E E +G +KE+ E + E+ + + +E EEK+E++E EE + E +
Sbjct: 283 EIENKEVSEG-DKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLAD 341
Query: 62 EEEEEEEEEEEEK 74
E E E+ EE++
Sbjct: 342 ELNELEKGIEEKR 354
Score = 30.8 bits (69), Expect = 0.72
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE---EEKEEEKEEEE 57
M EE ++ + + + Q +E E E +EE + + + EEKEE+ E EE
Sbjct: 272 MSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEE 331
Query: 58 EEKEEEEEEEEEEEEEKEVARR 79
E+ E +E E EK + +
Sbjct: 332 NERHTELLADELNELEKGIEEK 353
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 35.8 bits (83), Expect = 0.018
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEE--KKEEEEKEEEKEEEEEEKE 61
E +++ E+ER LRI + + + EE E EE++ K+E + + E +E EEE +
Sbjct: 806 ELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQ 865
Query: 62 EEEEEEEEEEEEKE 75
E + E E K
Sbjct: 866 NINENKNEFVEFKN 879
Score = 31.9 bits (73), Expect = 0.32
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE--EEEEEKEEEEEEEEEEEEEKEVA 77
L+ L + EE EE E EE+K ++E E E +E EEE + E K
Sbjct: 816 EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEF 874
Score = 31.2 bits (71), Expect = 0.50
Identities = 14/74 (18%), Positives = 30/74 (40%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
++ D + + + + E EEE + + ++ EE + EE+K
Sbjct: 787 ITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNL 846
Query: 63 EEEEEEEEEEEKEV 76
++E + E E +E
Sbjct: 847 KQEIKLELSEIQEA 860
Score = 30.4 bits (69), Expect = 0.97
Identities = 10/51 (19%), Positives = 28/51 (54%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE 52
E + + D + + I + ++ + +E +++E+ ++KK++ EK +E
Sbjct: 873 EFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDE 923
Score = 29.3 bits (66), Expect = 2.2
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK------- 53
M E++E +K E+++ L + E EEE + E + + E + + +K
Sbjct: 831 MRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIA 890
Query: 54 ----------EEEEEEKEEEEEEEEEEEEEKE 75
+E ++ E+ ++++++ E+ +
Sbjct: 891 KDVLIKLVISSDEIKQDEKTTKKKKKDLEKTD 922
Score = 28.9 bits (65), Expect = 3.1
Identities = 15/74 (20%), Positives = 31/74 (41%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
EK+ + I + + ++ E EEE + + +E EE E E
Sbjct: 782 EKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQREEMLMRPEELELINE 841
Query: 64 EEEEEEEEEEKEVA 77
E++ ++E + E++
Sbjct: 842 EQKNLKQEIKLELS 855
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 35.0 bits (81), Expect = 0.018
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 21/71 (29%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKE---------------------EEEEEKEEEEEEE 67
E + E +E+ + KEE K+ + E +EEEEE
Sbjct: 111 ESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIA 170
Query: 68 EEEEEEKEVAR 78
EEEEE KE
Sbjct: 171 EEEEEVKEPED 181
Score = 30.4 bits (69), Expect = 0.66
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 20/67 (29%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKE--------------------EEKEEEEEEKEEEEEE 66
L+ +E+ E KEE +K + + EEEE+E EEE
Sbjct: 114 LENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEE 173
Query: 67 EEEEEEE 73
EE +E E
Sbjct: 174 EEVKEPE 180
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 35.8 bits (82), Expect = 0.018
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E + K+ ++ I I L E+E +E+EE+ KK +E+ EE K EE KE
Sbjct: 184 EPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPK--VEEVKEG 241
Query: 63 EEEEEEEEEEEKEVARRWGVQ-KNRPAMNYD 92
+E ++++ ++ KEV + + VQ K++P D
Sbjct: 242 DEGKKKKTKKVKEVTKEYEVQNKHKPLWTRD 272
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 35.8 bits (82), Expect = 0.019
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+E+ E + ++E + D KE + EE +EE ++ + E+ EEE+
Sbjct: 394 EDEEEEDGQCNDEE---STMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEER 450
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYY 102
+ E + E+E++E +Q + A+ K R LR Y
Sbjct: 451 QLREFRDMEKEDREFPDEAELQPSESAIERYKEYRGLRNLY 491
Score = 28.5 bits (63), Expect = 3.6
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+ ++++ +E EE +EE ++ E EE EEEE + +E + P
Sbjct: 407 ESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFP 466
Query: 88 AMNYDKLSRSLRYYYEK 104
+ S S Y++
Sbjct: 467 DEAELQPSESAIERYKE 483
Score = 28.5 bits (63), Expect = 3.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E+EEEE+ + +EE ++++ ++ + EE +EE
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEES 432
Score = 28.1 bits (62), Expect = 4.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
T + + E+EEEE+ + +EE ++++ KE + EE +EE
Sbjct: 385 TSFYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEES 432
Score = 27.7 bits (61), Expect = 6.7
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+E ++ ++E AI+ + L +EEE + E + +KE+ E +E E + E
Sbjct: 417 DPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSE 475
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 35.8 bits (83), Expect = 0.019
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE--------EEEEEKKEEEEKEEEK 53
E E++E+++ + KER EL L +L+++ E + E EE EE + E+
Sbjct: 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVARRW 80
E E + E + +E R
Sbjct: 784 LEARLSHSRIPEIQAELSKLEEEVSRI 810
Score = 35.0 bits (81), Expect = 0.030
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEE--EEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E K+E++ R + R E+ L L ++E E+E +E +E++ + +E+ + E+E E
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Query: 60 KEEEEEEEEEEEEEKEVARR 79
++EE EEE EE E A R
Sbjct: 859 LNGKKEELEEELEELEAALR 878
Score = 34.7 bits (80), Expect = 0.045
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E ++ + R + R EL L K E E+E E+ E++EE+ KE +E EE+
Sbjct: 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
Query: 62 EEEEEEEEEEEEKEVARR 79
E+E E + E KE+ R
Sbjct: 749 LEQEIENVKSELKELEAR 766
Score = 31.2 bits (71), Expect = 0.57
Identities = 18/85 (21%), Positives = 40/85 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ ++ +K ++ EL+ L E+ + E+E E K+EE +EE +E E ++
Sbjct: 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNR 86
E + ++E E+ + + +
Sbjct: 880 LESRLGDLKKERDELEAQLRELERK 904
Score = 30.8 bits (70), Expect = 0.78
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++ + + R E + EL + + E E+E E+ E+EEEK +E +E E++ E+E E
Sbjct: 695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
Query: 64 EEEEEEEEEEKEVARR 79
+ E +E E +
Sbjct: 755 NVKSELKELEARIEEL 770
Score = 29.7 bits (67), Expect = 1.6
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E+ K + K E+ +E EEE EE E E + +KE +E E +
Sbjct: 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
Query: 62 EEEEEEEEEEEEKEV 76
E E + EE E ++
Sbjct: 898 LRELERKIEELEAQI 912
Score = 29.3 bits (66), Expect = 2.3
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
++K++ + + EL ++ L+ + E++ + E + K E +EE E E+ + E
Sbjct: 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
Query: 62 EEEEEEEEEEEEKEVARR 79
+EE EEE E A
Sbjct: 943 DEEIPEEELSLEDVQAEL 960
Score = 29.3 bits (66), Expect = 2.5
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+E+++ + + + + L+E E + E ++E E E + E E++
Sbjct: 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
Query: 63 EEEEEEEEEEEKEVARR 79
EE E + E++ K ++
Sbjct: 906 EELEAQIEKKRKRLSEL 922
Score = 28.9 bits (65), Expect = 3.0
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+ +++R E L+ + E ++E E + EEE ++ +E E EK
Sbjct: 208 EKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL 267
Query: 63 EEEEEEEEEEEKEV 76
EE E+ EE K++
Sbjct: 268 EEIEQLLEELNKKI 281
Score = 28.5 bits (64), Expect = 3.5
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE + + K E +E R+ + E + E + EEE + E +E E++ E
Sbjct: 768 EELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827
Query: 62 EEEEEEEEEEEEKEVA 77
+E E+E +E +++
Sbjct: 828 KEYLEKEIQELQEQRI 843
Score = 28.5 bits (64), Expect = 4.1
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEE--EEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E E + K +E EL L+ L+ + ++E +E E + +E E K EE E + E+
Sbjct: 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
Query: 60 KEEEEEEEEEEEEEKE 75
K + E + + E E
Sbjct: 915 KRKRLSELKAKLEALE 930
Score = 28.5 bits (64), Expect = 4.3
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+ +K RE E A E L+ +K E EE E E ++E + +++ EE E KEE
Sbjct: 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
Query: 64 EEEEEEEEEEKEVARRW 80
E+ E EE +
Sbjct: 367 EDLRAELEEVDKEFAET 383
Score = 27.7 bits (62), Expect = 7.0
Identities = 23/77 (29%), Positives = 38/77 (49%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E ++E + R + E+ L ++E E E EEE + +K EE E ++E E+ E
Sbjct: 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL 373
Query: 63 EEEEEEEEEEEKEVARR 79
EE ++E E E+
Sbjct: 374 EEVDKEFAETRDELKDY 390
Score = 27.3 bits (61), Expect = 8.6
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E G K+ EL L+ L+ K EE E + E++ K+ E K + + EEE E
Sbjct: 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAM 89
E+ + E+EE +E VQ +
Sbjct: 936 IEDPKGEDEEIPEEELSLEDVQAELQRV 963
Score = 27.3 bits (61), Expect = 8.9
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 12 REKERAIELRIFLQTLDEKEEEE---EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
RE+E+A + L+ E E E E+E E +K+ E + EEE E+ EE E E
Sbjct: 205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELE 264
Query: 69 EEEEEKEVARR 79
+ EE E
Sbjct: 265 KRLEEIEQLLE 275
Score = 27.3 bits (61), Expect = 9.2
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E + ++ +E+ ++IE I ++E EEE EE E ++ E + + ++E +E
Sbjct: 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
Query: 61 EEEEEEEEEEEEEKEVAR 78
E + E E + EE E
Sbjct: 895 EAQLRELERKIEELEAQI 912
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 35.6 bits (82), Expect = 0.020
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+EE E+ R+ E ++++E+E + E EEE +E+EKE+ + K+
Sbjct: 241 KEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKK 300
Query: 62 EEEEEEEEEEEE 73
E+E+E+EE E
Sbjct: 301 MMEDEDEDEEME 312
Score = 35.2 bits (81), Expect = 0.022
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK--------- 53
E D+ +++ + +E EE+E+E+ + +K E+E E+E+
Sbjct: 260 AEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPV 319
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
EEEE E+ E ++EEE++EV + R
Sbjct: 320 EEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRR 352
Score = 34.8 bits (80), Expect = 0.038
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE ++D E E A LDE E+E+E + E EEE EE+++E+ + +
Sbjct: 245 EEESGKRDVILEDESAEPT-----GLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLK 299
Query: 62 EEEEEEEEEEEEKEVA 77
+ E+E+E+EE + V
Sbjct: 300 KMMEDEDEDEEMEIVP 315
Score = 33.7 bits (77), Expect = 0.078
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE EK+K + K R+ DE E+EE E E +EEE +E E +++E
Sbjct: 284 EEETEEKEKEKRK------RLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEE 337
Query: 62 EEEEEEEEEEEEKEVARR 79
E+EE + + RR
Sbjct: 338 EKEEVTVSPDGGRRRGRR 355
Score = 32.5 bits (74), Expect = 0.20
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
K +K+K E ++ ++ E+E E E+E+++E K E EE
Sbjct: 226 TKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEE 285
Query: 64 EEEEEEEEEEKEV 76
E EE+E+E+ K +
Sbjct: 286 ETEEKEKEKRKRL 298
Score = 29.8 bits (67), Expect = 1.2
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE--------EEEEEEEEEEKEVARR 79
+EE EEE + + E+E E +E+E E+E + EEE EE+EKE +R
Sbjct: 239 TVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKR 297
Score = 29.4 bits (66), Expect = 1.8
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+T ++KE++E E +E+ EEE + + E+E E +E+E+E+E
Sbjct: 225 KTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEP 274
Score = 27.1 bits (60), Expect = 10.0
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ ++ E +EE EE+ + + E E E +E+E+E+E + E +
Sbjct: 229 KKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDS 283
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 35.6 bits (83), Expect = 0.020
Identities = 19/95 (20%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 3 EEKVEKDKGREKERAIELRIFLQ----TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
++E+D ++K ++ + + L E ++ +EE E+ + ++E+E+EK +E
Sbjct: 131 NNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEA 190
Query: 59 EKEEEEEEEEEEEEEKEVARRWG-VQKNRPAMNYD 92
+ ++ E E++++ K + G VQ + +
Sbjct: 191 LEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 35.6 bits (82), Expect = 0.020
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE---EEKEEEEEEEEEEEEEKEVARRWGV 82
T E E++ EEE E KK++EEK +EKE ++ +KE + + + ++ + +
Sbjct: 4 TESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSE 63
Query: 83 QKNR 86
+K+R
Sbjct: 64 KKSR 67
Score = 35.3 bits (81), Expect = 0.029
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLS 95
E E EKK E+E E+++++EEK +E+E ++ + +KE + Q+ N K S
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKS 62
Score = 29.9 bits (67), Expect = 1.5
Identities = 12/55 (21%), Positives = 33/55 (60%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ L E+E E ++++EE+ K++E +K + ++E + K + ++ + K+ ++
Sbjct: 11 KILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Score = 28.3 bits (63), Expect = 5.2
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ EE++E+ K +E E+A E + +KE + + + ++ K+ EK+ + +
Sbjct: 13 LTEEELERKKKKE-EKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDV 71
Query: 61 EEEEEEEEEEEE 72
E+E E+ + +
Sbjct: 72 EDENPEDFIDPD 83
Score = 27.9 bits (62), Expect = 6.4
Identities = 14/69 (20%), Positives = 38/69 (55%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
G E E +I + E+++++EE+ +E+E K+ + ++E + + + ++ + +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPK 60
Query: 71 EEEKEVARR 79
+ EK+ +R
Sbjct: 61 KSEKKSRKR 69
Score = 27.9 bits (62), Expect = 6.8
Identities = 16/85 (18%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E +K +++K +EKE +L+ + K + ++ + K+ E+K +++ E+E
Sbjct: 18 LERKKKKEEKAKEKE-LKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENP 76
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKN 85
E+ + + ++K ++ + Q +
Sbjct: 77 EDFIDPDTPFGQKKRLSSQMAKQYS 101
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 35.6 bits (82), Expect = 0.020
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEE-EEKKEEEEKEEEKEEEEEEKEEEE 64
+E+ K E E+ + ++ L E+E E++ E E+ +E+EK +++ E+E E+ +E
Sbjct: 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558
Query: 65 EEEEEEEEEKEVA 77
E ++ E EKE
Sbjct: 559 ERNKKLELEKEAQ 571
Score = 30.9 bits (70), Expect = 0.57
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE------EE 57
+EK+ ++ E +L + L ++ E+E EE +E E+ ++ E E+E +E +E
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Query: 58 EEKEEEEEEEEEEEEEKEVA 77
E E +E++ + KE+
Sbjct: 581 VESIIRELKEKKIHKAKEIK 600
Score = 29.0 bits (65), Expect = 2.4
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
I I Q E +EE EK EKE E++ E EK +E+E+ ++E E+E+
Sbjct: 494 IPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEME 553
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 35.4 bits (81), Expect = 0.021
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EEEE+ E EE EE E+E + +E+ EEEEEEE K +
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTM 178
Score = 35.0 bits (80), Expect = 0.035
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EEEEE E E+ EE ++E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 33.1 bits (75), Expect = 0.12
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDK- 93
EEEEE E +E+EE E++ + +++ EEEEEEE + K+ K + K
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDNGKS 199
Query: 94 -------LSRSLRYYYEKGIMQK 109
S+ L+ + +K ++K
Sbjct: 200 FWSAASVFSKKLQKWRQKQKLKK 222
Score = 33.1 bits (75), Expect = 0.12
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+ L+ +E E EE+EE E+E + +++ E+EEEEE K ++ + E + +K + G
Sbjct: 138 LVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDNG 197
Score = 29.6 bits (66), Expect = 1.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
R+ +F +E E + + + + EEEEE E EE+EE E+E +
Sbjct: 102 RSTLWSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGK 161
Query: 76 VAR 78
V
Sbjct: 162 VVD 164
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 35.5 bits (81), Expect = 0.022
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEE-EKEEEEEEK 60
E ++EK+ K A+E++I + E+ E EE E E E+ E E+E E+E E E+
Sbjct: 436 ERARIEKENAHRK--ALEMKILEKKRIERLEREERERLERERMERIERERLERERLERER 493
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAG 112
E + E + + E R ++++R +K R+ Y+ KG+ ++
Sbjct: 494 LERDRLERDRLDRLERERVDRLERDR----LEKARRN--SYFLKGMENGLSA 539
Score = 28.9 bits (64), Expect = 2.6
Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
E+E + E K E+++ E E EE E+ E E E E E E R + R +
Sbjct: 441 EKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLE 500
Query: 91 YDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGL 127
D+L R R ++ ++ R F + NGL
Sbjct: 501 RDRLDRLERERVDRLERDRLEKARRNSYFLKGMENGL 537
Score = 28.2 bits (62), Expect = 5.9
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
D E E+E K E + E+K E E+EE E E E E E R + R
Sbjct: 433 DHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERE 492
Query: 88 AMNYDKLSRSLRYYYEKGIMQKVAGER 114
+ D+L R E+ + ++ +R
Sbjct: 493 RLERDRLERDRLDRLERERVDRLERDR 519
Score = 27.8 bits (61), Expect = 6.2
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK-EEEEEE 59
+E++++E+ + E+ER R+ E E E E E+ E E E ++ E + +
Sbjct: 455 LEKKRIERLEREERERLERERM---------ERIERERLERERLERERLERDRLERDRLD 505
Query: 60 KEEEEEEEEEEEEEKEVARR 79
+ E E + E + E ARR
Sbjct: 506 RLERERVDRLERDRLEKARR 525
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 34.4 bits (79), Expect = 0.022
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+E + EE EEE E E EE EE EE EK E E E +E
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADE 45
Score = 31.7 bits (72), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE K EE +EE + E EE EE EE E+ E E+A
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELA 39
Score = 29.8 bits (67), Expect = 0.92
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EE + E+ EEE + E EE EE EE E+ E E E A +
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEF 46
Score = 29.0 bits (65), Expect = 1.5
Identities = 19/44 (43%), Positives = 22/44 (50%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EE + EE EE+ E E EE EE EE E+ E E E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADE 45
Score = 28.3 bits (63), Expect = 2.6
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+E EEE E E EE +E E+ EK E E E +E E
Sbjct: 8 EEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 34.0 bits (78), Expect = 0.023
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
T ++EEEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 91 TGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 33.6 bits (77), Expect = 0.027
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+EEEEEEEE EK+++ ++ + ++ ++ E E EE
Sbjct: 94 TRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.1 bits (73), Expect = 0.094
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+EEEE++EE EK+++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 30.5 bits (69), Expect = 0.34
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+EEEEEEEE +K+++ E + ++ ++ + E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 30.5 bits (69), Expect = 0.40
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
T E+EEEEEE E++++ E + ++ ++ E E EE
Sbjct: 93 HTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
+E+EEEEEE E++++ E + Q PA N
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAEN 128
Score = 28.2 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 52 EKEEEEEEKEEEEEEEEEEEEEKEV 76
+EEE+EEEE E++++ +E +V
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQV 116
Score = 27.1 bits (60), Expect = 4.6
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+EE++EEEE E++++ +E + ++ ++ E E +E A
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEESA 133
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 34.6 bits (80), Expect = 0.024
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+DE E EEE EE EE+KEEEE + +E E K++E E++++E+E
Sbjct: 135 VDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 28.1 bits (63), Expect = 3.1
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 17 AIELRIFLQTLDEKEEEEEEEE-EEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
I++ + E+E EE EE+ EEEE K EE E +++E EK+++E+E
Sbjct: 130 KIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 27.7 bits (62), Expect = 4.5
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E +E+E EEE ++ EE+KEEE+ + EE E +++E E+++KE
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKE 178
Score = 26.9 bits (60), Expect = 8.0
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E +E+E +EE E+ EE++EEEE K EE E +++E E +
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKK 176
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 33.8 bits (78), Expect = 0.025
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
L +DE+ E + +EE++ EEE K + +E +E E+E+++
Sbjct: 86 LDEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 30.3 bits (69), Expect = 0.38
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
LDE +E E + +E E+K +EEE K + EE +E E E+K+
Sbjct: 85 VLDEIDERAEAQRARDE--------EKKLDEEEAKRQHEEAKEREREKKK 126
Score = 28.4 bits (64), Expect = 1.9
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+++ E ++ ++E++ +E+E + + EE +E E+E
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 27.6 bits (62), Expect = 3.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKE 45
E +RA + L + K + EE +E E EKK+
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 26.1 bits (58), Expect = 9.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E E + ++EE++ EEE + + EE +E+E ++
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 34.5 bits (80), Expect = 0.025
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EK++K+ K+R EL+ ++ L + EE EE E E+ ++ EKE +K + E EK
Sbjct: 70 RLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKY 129
Query: 62 EE------EEEEEEEEEEKEVARRW 80
E+ E+ +EE + KE A RW
Sbjct: 130 EKNDPERIEKLKEETKVAKEAANRW 154
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 35.0 bits (81), Expect = 0.026
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE--EEKEEEEEEKEEEE 64
EK E+ +A + L EK++EEE+ E +E+ +E + EK E E EK E
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAE 262
Query: 65 EEEEEEEEEKE 75
+E E + +E
Sbjct: 263 QERMLEHKLQE 273
Score = 33.0 bits (76), Expect = 0.10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
T EK E E + E + E+E E+++EEE+ E +E +E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
Score = 30.7 bits (70), Expect = 0.53
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
LQT +E+ E E K E E E+E E++++EE+ E +E ++ V +
Sbjct: 193 LQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQ 247
Score = 27.3 bits (61), Expect = 7.6
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 16/68 (23%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEE------EEEKKEEEEKEEEKEEEEEEKEEEEEE 66
KE+AIE E + E E E++KEEE+ E +E +E ++ E
Sbjct: 201 AKEKAIE----------AERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIE 250
Query: 67 EEEEEEEK 74
+ E E EK
Sbjct: 251 KMEAEREK 258
Score = 26.9 bits (60), Expect = 9.2
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ EK ++++ + + + ++ L EK E E E+ E+++ E K +E+EE +E
Sbjct: 222 LLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKEG 281
Query: 61 EEEEEEEEEEE 71
+ E E ++E
Sbjct: 282 FKTEAESLQKE 292
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 35.3 bits (81), Expect = 0.026
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+E+ E D + ++ + LQ + + +E EE E K E E KE E+
Sbjct: 649 SEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLF 708
Query: 61 EEEEEEEEEE--EEEKE 75
+E EE+ EEEK+
Sbjct: 709 DESEEDNIVGMIEEEKD 725
Score = 30.6 bits (69), Expect = 0.95
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E KV +G ++ +L DE EE+ EEEK ++ K E ++ EE E
Sbjct: 688 AENKVASIEGEHRKEIEDL-----LFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELE 742
Query: 62 EEEEEEEEEEEE 73
E E+
Sbjct: 743 ALEANLLAEQNS 754
Score = 29.5 bits (66), Expect = 1.7
Identities = 15/74 (20%), Positives = 31/74 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E ++ E + A + +++ +E EE+ EEE+ ++ + E ++
Sbjct: 678 SQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDIS 737
Query: 62 EEEEEEEEEEEEKE 75
EE E E E
Sbjct: 738 LEELEALEANLLAE 751
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 33.0 bits (76), Expect = 0.026
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEE 70
EEE+KEEEEEEEE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 32.6 bits (75), Expect = 0.033
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 39 EEEEKKEEEEKEEEKEEEEEE 59
EEE+KEEE+EEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.6 bits (75), Expect = 0.039
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEE 65
EE+++EEEE+EEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 32.2 bits (74), Expect = 0.039
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 52 EKEEEEEEKEEEEEEEEEEEE 72
EE+++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.2 bits (74), Expect = 0.044
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 51 EEKEEEEEEKEEEEEEEEEEE 71
EEEK+EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 31.8 bits (73), Expect = 0.071
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 52 EKEEEEEEKEEEEEEEEEEEEE 73
+EE++EEEEEEEE+
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEED 80
Score = 31.4 bits (72), Expect = 0.087
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEE 64
EEEK+EEEEE+EE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 31.4 bits (72), Expect = 0.090
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 54 EEEEEEKEEEEEEEEEEEEE 73
E+E++EEEEEEEE++
Sbjct: 62 AAAAAEEEKKEEEEEEEEDD 81
Score = 31.1 bits (71), Expect = 0.11
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 38 EEEEEKKEEEEKEEEKEEEEE 58
+EE+++EEE+EEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.7 bits (70), Expect = 0.17
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 55 EEEEEKEEEEEEEEEEEEEKE 75
EEE++EEEEEEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.19
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 46 EEEKEEEKEEEEEEKEEEEEE 66
E+E++EEE+EEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 34 EEEEEEEEEKKEEEEKEEEKE 54
EEEKKEEEE+EEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.23
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 47 EEKEEEKEEEEEEKEEEEEEE 67
+EE++EE+EEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 0.26
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 35 EEEEEEEEKKEEEEKEEEKEE 55
EE+K+EEE+EEE+++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 0.32
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 29 EKEEEEEEEEEEEEKKEEEE 48
EEE++EEE++EEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 29.9 bits (68), Expect = 0.34
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 56 EEEEKEEEEEEEEEEEEEKEV 76
EEE++EEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.1 bits (66), Expect = 0.54
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 33 EEEEEEEEEEKKEEEEKEEE 52
EEE+K+EEEE+EE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 28.7 bits (65), Expect = 0.74
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 28 DEKEEEEEEEEEEEEKKEEEE 48
EEE++EEEE++EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.7 bits (65), Expect = 0.84
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEE 51
EEE++E++EEEE+++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 28.4 bits (64), Expect = 1.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 37 EEEEEEKKEEEEKEEEKEEEE 57
++E++E+EEE+EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.4 bits (64), Expect = 1.2
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 32 EEEEEEEEEEEKKEEEEKEEE 52
EEE++++EEEE+E++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.0 bits (63), Expect = 1.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 36 EEEEEEEKKEEEEKEEEKEEE 56
E++++EE+EEE+E++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 2.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 41 EEKKEEEEKEEEKEEEEEEKE 61
EE+++E+EEEEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 34.6 bits (80), Expect = 0.026
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
F + +E EE+EE E ++ E EE EE E
Sbjct: 203 FWRDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 34.6 bits (80), Expect = 0.033
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ EE EE+EE E E+ E +E EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 33.5 bits (77), Expect = 0.067
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+ EE +E+EE E E+ E EE EE W
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNEWE 248
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
EE EE+EE + E E EE EE E
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 32.7 bits (75), Expect = 0.11
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ EE EE+EE E E+ E EE +E E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 32.7 bits (75), Expect = 0.14
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 32.3 bits (74), Expect = 0.17
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE E+KEE E E+ E EE EE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAAN 244
Score = 31.2 bits (71), Expect = 0.44
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE EEK+E + E+ E EE EE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE EE+++ E ++ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 28.1 bits (63), Expect = 4.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE +E+E+ E E+ E EE E
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGE 237
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 33.4 bits (77), Expect = 0.028
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
DE++EEE E + + E+++ + E EEEEEEK+ EE
Sbjct: 70 DEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 32.2 bits (74), Expect = 0.064
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ + ++++EEE+E +++ E+E+ + E EEEEEEK+
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQ 103
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 35.2 bits (81), Expect = 0.028
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ KE++EE++EE+ E+ + EE +EE EEEE+ E E+ E K+
Sbjct: 278 ELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 34.8 bits (80), Expect = 0.036
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E K+++EEK+EEK EE + +E +EE EEEE+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 34.8 bits (80), Expect = 0.037
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+L+ L EK+EE++EE+ EE K EE ++E E+EE+ E E+ E
Sbjct: 275 WLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 34.1 bits (78), Expect = 0.064
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
E++EE++E+K EE K EE +EE EE+E+ E E+ E +++
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKF 326
Score = 33.7 bits (77), Expect = 0.086
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
KE +E++EE++EEK EE + EE EE EEE++ E E+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVN 319
Score = 32.5 bits (74), Expect = 0.24
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
L E +E++EE++EE+ ++ + E+ +E+ EEEE+ E E+ E
Sbjct: 276 LKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 31.4 bits (71), Expect = 0.53
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++E++EE+ EE + ++ +EE EEE++ E E+ E ++ KEV
Sbjct: 283 KEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEV 330
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 34.5 bits (80), Expect = 0.028
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q E E+E ++ EEE+E+ E+ E E + E EK EEEE + EE+ +
Sbjct: 120 QGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHAD 170
Score = 33.0 bits (76), Expect = 0.089
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ E+ K ++ +L +EKEE E+ E E K E EK EE+E + EEK +
Sbjct: 117 QAEQGKSELEQEIKKLE------EEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHAD 170
Query: 65 E 65
E
Sbjct: 171 E 171
Score = 32.6 bits (75), Expect = 0.096
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE----EEKEEEEEEKEEEEEEEEEEEEEKE 75
+R LQ K E E+E ++ EE+KEE EK E K E E++EEEE + EE+ E
Sbjct: 112 MRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Query: 76 VA 77
+A
Sbjct: 172 IA 173
Score = 31.4 bits (72), Expect = 0.26
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
+ E+ + E E+E +K EEE++E EK E E + E E+ EEEE + +R
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRH 168
Score = 29.5 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
EL ++ L+E++EE E+ E E K E ++ E+EE + E++ +E
Sbjct: 124 ELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 34.3 bits (79), Expect = 0.028
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ E+E E EEEEKKE+++K+E K+E++E+K+++E+ E + +K
Sbjct: 139 TTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 33.5 bits (77), Expect = 0.047
Identities = 17/52 (32%), Positives = 38/52 (73%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
K E+E E EEEE+K+++++KE +KE++E++ ++E+ E + ++K+ ++
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 33.2 bits (76), Expect = 0.063
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D E E E EK+ + E+E E EEEEK+E+++++E ++E+KE
Sbjct: 122 DGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 32.8 bits (75), Expect = 0.10
Identities = 15/47 (31%), Positives = 33/47 (70%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E E E+E + E++ E +EEE++EK++++E ++E++E+K+
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 32.8 bits (75), Expect = 0.11
Identities = 16/45 (35%), Positives = 34/45 (75%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E E+E K E+E + EE+E++E++K++E ++E++E+++K+
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 32.4 bits (74), Expect = 0.15
Identities = 17/51 (33%), Positives = 37/51 (72%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E E+E + EK+ E E+EE+KE++++++ ++E++E+++++EK V
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Score = 32.0 bits (73), Expect = 0.19
Identities = 18/59 (30%), Positives = 41/59 (69%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
L + E E+E + +KE E +EEEK+E++++KE ++E++E++++++++ G +K
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 31.6 bits (72), Expect = 0.25
Identities = 18/50 (36%), Positives = 39/50 (78%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
T ++E E EEEE++EKK+++E ++EK+E++++KE+ E + ++++K+
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 30.1 bits (68), Expect = 0.87
Identities = 16/64 (25%), Positives = 44/64 (68%)
Query: 11 GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
G E E + + + + EEEE++E++++K+ ++EK+E+K+++E+ E + +++++
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 71 EEEK 74
+++K
Sbjct: 189 KKKK 192
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ E E + E++ K E+E E EEEE++E+++++E
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEV 163
Score = 28.9 bits (65), Expect = 1.9
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E + E ++E + E+E E EEEE++E++++KEV +
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKE 166
Score = 27.8 bits (62), Expect = 4.8
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ E E + E+E + E+E E +EEE++E+++++E K
Sbjct: 121 PDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVK 164
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 33.8 bits (77), Expect = 0.028
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E + EK A E + D E+ +E E + + +EE+E ++ +E E
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADE 113
Query: 62 EEEEEEEEEEEEKEVA 77
+ E EE +EEE E A
Sbjct: 114 ADAEAEEADEEEDEEA 129
Score = 32.6 bits (74), Expect = 0.068
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ +E E + +E +EEE E E +E E EE +EEE+EE E
Sbjct: 83 EDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 32.2 bits (73), Expect = 0.093
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ E + +E +EEE+ +E E E + E +E +EEE+EE E
Sbjct: 87 EAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 29.1 bits (65), Expect = 1.1
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
L+ + E+ E E+ E + +E+ E E + +E +E+E
Sbjct: 50 LEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEET 103
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.1 bits (81), Expect = 0.030
Identities = 25/85 (29%), Positives = 42/85 (49%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EE + K+K + ++ ELR L E +E EE +KEE E+ E+ +E ++K
Sbjct: 542 LEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKK 601
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKN 85
+E EE + EE + +N
Sbjct: 602 LKELEERLSQLEELLQSLELSEAEN 626
Score = 32.8 bits (75), Expect = 0.15
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE EK++ +E EL L+ L+E+ E E EE +++ EE+ E+ + EE +E
Sbjct: 488 EELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEE 547
Query: 62 EEEEEEEEEEEEKE 75
+E+ + ++ +E+
Sbjct: 548 LKEKLQLQQLKEEL 561
Score = 32.8 bits (75), Expect = 0.17
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
EK EK KE E + ++ L+ + E E+ E+ + EEE +E K+ EE ++E+E
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQE 226
Query: 64 EEEEEEEEEEKE 75
EEE E+E E E
Sbjct: 227 EEELEQEIEALE 238
Score = 32.0 bits (73), Expect = 0.27
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ K+E+ +G+ E ++ L+ L+E+ +E ++ EE +E++EEEE E+E E EE E
Sbjct: 184 KAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAE 243
Query: 63 EEEEEEEEEEEK 74
EEE+E EE K
Sbjct: 244 LEEEKERLEELK 255
Score = 31.7 bits (72), Expect = 0.36
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E K +++ E E+ +E + E+ +E +EE E EE +EE EE E+E E
Sbjct: 361 ERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELE 420
Query: 62 EEEEEEEEEEEEKEVARRWGVQKN 85
E E E EE EEE + Q
Sbjct: 421 ELERELEELEEEIKKLEEQINQLE 444
Score = 31.3 bits (71), Expect = 0.59
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E++E++ +E LR L+ L+E E+ + EE EK EE+ ++ E E EE +E+
Sbjct: 294 EELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353
Query: 64 EEEEEEEEEEKEVARR 79
E + EE KE+ R
Sbjct: 354 ELAKLLEERLKELEER 369
Score = 30.9 bits (70), Expect = 0.61
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E ++E K RE+E R+ + +E+ E EE E E +E EE+ E EE
Sbjct: 261 IESLELEALKIREEELRELERLLEEL---EEKIERLEELEREIEELEEELEGLRALLEEL 317
Query: 61 EEEEEEEEEEEEEKEVARR 79
EE E+ + EE E
Sbjct: 318 EELLEKLKSLEERLEKLEE 336
Score = 30.9 bits (70), Expect = 0.67
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++E+ R +E E+ + L+ EE EE EK + E+ EK EE+ EK
Sbjct: 282 LLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKL 341
Query: 62 EEEEEEEEEEEEKE 75
E E EE EE+ +
Sbjct: 342 ESELEELAEEKNEL 355
Score = 30.9 bits (70), Expect = 0.75
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE ++ + EL L E+ E EE EE E++ E E+E + E EE
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527
Query: 62 EEEEEEEEEEEEKEVA 77
+EE EE+ E+ E +
Sbjct: 528 KEELEEKLEKLENLLE 543
Score = 30.9 bits (70), Expect = 0.80
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE-EEKEEEKEEEEEEK 60
E ++E+ + + L + L++ + EE E+ EEK E+ E + EE EE+ E
Sbjct: 296 LEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNEL 355
Query: 61 EEEEEEEEEEEEEKEVA 77
+ EE +E EE+
Sbjct: 356 AKLLEERLKELEERLEE 372
Score = 30.5 bits (69), Expect = 0.92
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ E + E + E E A++ + + + EE EE +E+ + ++ KEE ++ E+ +
Sbjct: 510 LRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQ 569
Query: 61 EEEEEEEEEEEEEK 74
E +E EE
Sbjct: 570 ELKELLEELRLLRT 583
Score = 30.5 bits (69), Expect = 0.92
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 1 MEEEKVEKDKGREKERAIE-LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+E E+ K++ EK +E L L+ L EK + ++ +EE + ++ ++ +E EE
Sbjct: 521 LELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
Query: 60 KEEEEEEEEEEEEEKE 75
+EE EE E +
Sbjct: 581 LRTRKEELEELRERLK 596
Score = 30.1 bits (68), Expect = 1.1
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E +E +E EL+ + +E+EEEE E+E E ++ E EEEKE EE K
Sbjct: 197 LLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA 256
Query: 62 EEEEEEEEEEEEKEVARR 79
E E E E ++
Sbjct: 257 RLLEIESLELEALKIREE 274
Score = 30.1 bits (68), Expect = 1.2
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E +++ K + +E +L L+ +++ E EEE +E +K EE ++E+E+EE E+E E
Sbjct: 178 EVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEAL 237
Query: 64 EEEEEEEEEEKEVARR 79
EE E EEEKE
Sbjct: 238 EERLAELEEEKERLEE 253
Score = 30.1 bits (68), Expect = 1.3
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE E+ K L+ + L+E E+E E+ E ++ EE +E ++E E
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Query: 62 EEEEEEEEEEEEKEVA 77
EE +EE EE EKE+
Sbjct: 405 LEEIQEELEELEKELE 420
Score = 29.7 bits (67), Expect = 1.7
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E K + ++ + + I L+ EEE +E ++ EE +EE+E+EE ++E E +
Sbjct: 180 IKEAKAKIEELEGQLSELLEDI-EDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALE 238
Query: 61 EEEEEEEEEEEEEKEV 76
E E EEE+E +E+
Sbjct: 239 ERLAELEEEKERLEEL 254
Score = 29.3 bits (66), Expect = 2.1
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+ ++ K R +E+ + EEE E E ++ EE+ E +E E E +E E
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304
Query: 64 EEEEEEEEEEKE 75
EE E +E
Sbjct: 305 EELEGLRALLEE 316
Score = 29.3 bits (66), Expect = 2.4
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE-EKEEEEEEEEEE 70
++ ELR ++ L+++ E EEE E + EE KEE +E+ E+ E EE EE +E
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Query: 71 EEEKEVARR 79
+ + + +
Sbjct: 551 KLQLQQLKE 559
Score = 29.0 bits (65), Expect = 2.5
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+ + +ER EL L+ L+++ E+ E ++ E+ +E KEE E +E
Sbjct: 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI 408
Query: 63 EEEEEEEEEEEKEVAR 78
+EE EE E+E +E+ R
Sbjct: 409 QEELEELEKELEELER 424
Score = 29.0 bits (65), Expect = 2.5
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE +++ K E + L + L+E E+E EE E E E+ EEE K+ E++ + E +E
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447
Query: 63 EEEEEEEEEEEK 74
E EK
Sbjct: 448 LMIAELAGAGEK 459
Score = 29.0 bits (65), Expect = 3.1
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE++EK + + ++ EL + +E + EE +E E++ EE ++E ++ E K+
Sbjct: 327 LEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQ 386
Query: 62 EEEEEEEEEEEEKEVARR 79
EE +E +EE E++
Sbjct: 387 LEEAIQELKEELAELSAA 404
Score = 28.6 bits (64), Expect = 3.9
Identities = 28/72 (38%), Positives = 35/72 (48%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE + E L+I + L E E EE EE+ E+ EE E+E E+ EEE E
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311
Query: 63 EEEEEEEEEEEK 74
EE EE EK
Sbjct: 312 ALLEELEELLEK 323
Score = 28.6 bits (64), Expect = 4.1
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE E K E + E Q ++ EE E EEE+E+ EE + + E E +
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
Query: 62 EEEEEEEEEEEEKEVARRWGVQKN 85
+ EEE E E+ + +
Sbjct: 269 LKIREEELRELERLLEELEEKIER 292
Score = 28.2 bits (63), Expect = 5.0
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEE--EEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EEE++E++ +ER EL + L+E + E E E E K EE+ E E EE
Sbjct: 226 EEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEE 285
Query: 60 KEEEEEEEEEEEEEKEVARR 79
EE+ E EE E E E
Sbjct: 286 LEEKIERLEELEREIEELEE 305
Score = 28.2 bits (63), Expect = 5.6
Identities = 26/104 (25%), Positives = 41/104 (39%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E EK ++ RE E E L+ + E +E E E+ +E EE +
Sbjct: 413 EELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHE 472
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEK 104
+E E E E EE E ++ ++L + LR E+
Sbjct: 473 KELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEE 516
Score = 27.8 bits (62), Expect = 6.7
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E +++ ++ + R EL + L E +++ +E EE + EE + E E E E E
Sbjct: 570 ELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELE 629
Query: 62 EEEEEEEEEEEEKEVA 77
E EEE E E E+ +
Sbjct: 630 EAEEELESELEKLNLQ 645
Score = 27.8 bits (62), Expect = 7.3
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ E ++ + +E EE EEE E E EK + + EE + E+ EE+ EE E E
Sbjct: 610 SQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAE 669
Query: 72 EEKEVAR 78
+E+ R
Sbjct: 670 IRRELQR 676
Score = 27.4 bits (61), Expect = 7.6
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+E++E+ + R KE +L+ + L + EE + E E + E EE EEE E E E+
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNL 644
Query: 63 EEEEEEEEEEEKEVARR 79
+ E EE + E
Sbjct: 645 QAELEELLQAALEELEE 661
Score = 27.4 bits (61), Expect = 7.8
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQT----LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
E+ + EKER EL+ L E + EEE E E+ EE +E+ + EE
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEE 295
Query: 58 EEKEEEEEEEEEEEEEKEVARR 79
E+E EE EEE E +
Sbjct: 296 LEREIEELEEELEGLRALLEEL 317
Score = 27.4 bits (61), Expect = 8.1
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE++E + + +A + L+E EE+ EE E E ++ + + EE+ EE+ E+
Sbjct: 631 AEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEEL 690
Query: 62 EEEEEEEEEEEEK 74
E+ EEE E+ E+
Sbjct: 691 EQLEEELEQLREE 703
Score = 27.4 bits (61), Expect = 8.5
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE++++ K E+ + + L+ E EE E EEE+++ EE K E E E E
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
Query: 63 EEEEEEEEEEEKEVARRWGVQKNR 86
+ EEE E + + + R
Sbjct: 269 LKIREEELRELERLLEELEEKIER 292
Score = 27.4 bits (61), Expect = 9.4
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E+++EK R K+ ++ + L E EE +EE E+ E+E EE + E EE +EE
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKE-LEELERELEELEEE 432
Query: 63 EEEEEEEEEEEKE 75
++ EE+ + +
Sbjct: 433 IKKLEEQINQLES 445
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.9 bits (81), Expect = 0.033
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E EEEE E E +K +K+ + E+K E+EE E+ ++K
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKK 438
Score = 30.3 bits (69), Expect = 0.87
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
++ E++ E+EE EK ++K E ++ + + E ++ + +
Sbjct: 419 RKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L E ++ +++ + +K+ E++E EK +++ E ++ + + E
Sbjct: 406 LSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 28.4 bits (64), Expect = 4.0
Identities = 8/44 (18%), Positives = 26/44 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+K+ + E++ E+EE ++ K++ + ++ K + E ++ + +
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly
related to archaeal Holliday junction resolvase
[Nucleotide transport and metabolism].
Length = 175
Score = 34.0 bits (78), Expect = 0.037
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
LR ++++L K E + E EE +K E +E E + KEEE + +E E++ E A
Sbjct: 18 YLLRAYIRSLQGKVESKARELEETLQKAE--RERLVNEAQARKEEEWKLKEWIEKKIEEA 75
Query: 78 RRWGVQKNR 86
R V+K+R
Sbjct: 76 REDAVRKSR 84
Score = 26.7 bits (59), Expect = 9.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E EE ++ E E E + ++EE+ + +E E++ EE E+ K A
Sbjct: 37 ELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEAREDAVRKSRA 85
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 33.7 bits (78), Expect = 0.037
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ + E E E + + ++EK E +E E + +E E E + A
Sbjct: 54 AELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHA 107
Score = 29.5 bits (67), Expect = 0.97
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
Q L E + E E + E + K ++E+ E +E E + +E E
Sbjct: 51 QHLAELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAES 104
Score = 28.3 bits (64), Expect = 2.1
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+ + + ++EK + E +E + + +E E E + R+
Sbjct: 73 QAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQHHRFA 115
Score = 27.5 bits (62), Expect = 3.9
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEE-EKEEEEEEKEEEE 64
A L + + + + ++E+ + E +E E + +E E E +
Sbjct: 58 ADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22.
The mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded
pre-proteins into mitochondria, is very complex with at
least 19 components. These proteins include several
chaperone proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner
membrane translocase (Tim) and three "motor" proteins.
This family represents the Tom22 proteins. The N
terminal region of Tom22 has been shown to have
chaperone-like activity, and the C terminal region
faces the intermembrane face.
Length = 136
Score = 33.4 bits (77), Expect = 0.039
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L E E+E +E+ K +E+ ++ +E++ + + + ++ + E E
Sbjct: 4 LTEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 31.1 bits (71), Expect = 0.21
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E+E +E+ + +EE +++E++ + + + ++ + E E
Sbjct: 6 EVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 29.9 bits (68), Expect = 0.55
Identities = 7/44 (15%), Positives = 24/44 (54%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E+E +E+ + +E+ ++++E + + + + ++ + E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFE 48
Score = 29.9 bits (68), Expect = 0.65
Identities = 7/45 (15%), Positives = 24/45 (53%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E+E +E+ + +EE ++++E+ + + + ++ + +
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFEN 49
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 34.5 bits (80), Expect = 0.039
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEE--EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K +E+E + + F + + E + E E+EE + +E K K+ EEEE EEEEEEE
Sbjct: 462 KRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEEEE 521
Query: 68 EEEEEEKEVARR 79
E +
Sbjct: 522 AVVVESAKNYTE 533
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 34.8 bits (80), Expect = 0.041
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 11 GREKERAIELRIFL-------QTLD-EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
GR + +L++ + T E E + E E EE+ +E ++ + + E
Sbjct: 242 GRTEVTEEDLKLAVELVLLPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGE 301
Query: 63 EEEEEEEE 70
E ++ EE
Sbjct: 302 ETDQIPEE 309
Score = 31.3 bits (71), Expect = 0.49
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E E + E E EEE E ++ + ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEET 303
Score = 30.9 bits (70), Expect = 0.62
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E + E E EEE +E ++ + ++ EE +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETD 304
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 34.5 bits (78), Expect = 0.041
Identities = 22/75 (29%), Positives = 45/75 (60%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E E+ E+ +EK++ + I L K E+E+++ E+E++K E+EK++ +
Sbjct: 149 IELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNA 208
Query: 61 EEEEEEEEEEEEEKE 75
E E+E+++ E EK+
Sbjct: 209 IELEQEKQKTENEKQ 223
Score = 31.0 bits (69), Expect = 0.54
Identities = 21/74 (28%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E + +K+ ++RA + I L+ ++K E+E+++ E+E E + K E+E++K
Sbjct: 128 IELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKE--GIELANSQIKAEQEKQK 185
Query: 61 EEEEEEEEEEEEEK 74
E+E+++ E+E++K
Sbjct: 186 TEQEKQKTEQEKQK 199
Score = 30.6 bits (68), Expect = 0.80
Identities = 16/57 (28%), Positives = 36/57 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
E E+EE++ E+E++K E+E E + + E+E+++ E+E+++ E+E + +
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANK 206
Score = 29.5 bits (65), Expect = 1.7
Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE+K E++K + ++ IEL + E+E+++ E+E++K E+E+++ + E
Sbjct: 154 EEQKTEQEKQKTEKEGIELANSQI---KAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIE 210
Query: 62 EEEEEEEEEEEEKEV 76
E+E+++ E E++++
Sbjct: 211 LEQEKQKTENEKQDL 225
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 34.6 bits (79), Expect = 0.043
Identities = 14/78 (17%), Positives = 38/78 (48%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+++ E + + Q + ++ E E+ + E +K +EE + + + + K+
Sbjct: 251 RQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQ 310
Query: 62 EEEEEEEEEEEEKEVARR 79
E + E+E E+++ A++
Sbjct: 311 ESKASEKEAEDKELEAQK 328
Score = 32.3 bits (73), Expect = 0.23
Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 2 EEEKVEKDKGREKERA-IELRIFLQTL--------DEKEEEEEEEEEEEEKKEEEEKEEE 52
E+++V +++ RE E+A IE++ + + ++E + E+E E KE E +++
Sbjct: 271 EDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKR 330
Query: 53 KEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ E+ ++ + + E + E A
Sbjct: 331 EPVAEDLQKTKPQVEAQPTSLNEDAI 356
Score = 28.0 bits (62), Expect = 4.6
Identities = 12/76 (15%), Positives = 42/76 (55%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ E+ + R + L E+E +E+ + ++ K+E ++K+ + ++ +++ + ++ +++ +
Sbjct: 189 DNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRD 248
Query: 73 EKEVARRWGVQKNRPA 88
E ++ +PA
Sbjct: 249 EVRQKQQEAKNLPKPA 264
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 33.7 bits (78), Expect = 0.044
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EE+K +E+ EE E E E++EE +E E E+E ++ AR
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADAR 42
Score = 31.4 bits (72), Expect = 0.23
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE--EEEEEEEKEVARR 79
E+ EE E E E++++ +E + E++ +E + + E E E + EE++ R
Sbjct: 10 QEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSVLR 63
Score = 31.4 bits (72), Expect = 0.25
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
EE++ +E+ EE E E E++EE +E E E+E +E +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
Score = 31.4 bits (72), Expect = 0.25
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E++ +E+ EE + E E++EE +E E E E +E + E E ++A
Sbjct: 3 NEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLA 51
Score = 30.7 bits (70), Expect = 0.41
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE+K +E+ E+ E E E++EE +E E E+E E R
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADAR 42
Score = 30.7 bits (70), Expect = 0.49
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
EE++ +E+ E+ E E +++E+ +E E ++E +E + E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAE 45
Score = 29.5 bits (67), Expect = 1.2
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E+ E E E++EE ++ E E++ +E + E E + E + EE +
Sbjct: 13 VSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
Score = 26.8 bits (60), Expect = 7.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ E E E++EE +E E ++E ++ + + E E + E + EE +
Sbjct: 13 VSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 34.5 bits (80), Expect = 0.044
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 7 EKDKGREKERAIELRIFL-QTLDEKEEEEEEEEEEEEKKEEE---EKEEEKEEEEE---- 58
KDKG KE+ I I L + E E ++ EE E++ E+ E K E EE
Sbjct: 482 AKDKGTGKEQKI--TITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYS 539
Query: 59 -EKEEEEEEEEEEEEEKEVAR 78
EK +EE ++ E +K+
Sbjct: 540 LEKSLKEEGDKLPEADKKKVE 560
Score = 31.8 bits (73), Expect = 0.30
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 1 MEEEKVEKDKGREK-ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EE E K +E+ E E ++ +L++ +EE ++ E +KK+ EE E +EE E
Sbjct: 513 AEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEG 572
Query: 60 KEEEEEEEEEEEEEKEV 76
+++EE E + EE +K V
Sbjct: 573 EDKEEIEAKTEELQKVV 589
Score = 30.3 bits (69), Expect = 1.1
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 2 EEEKVEKD----KGREKER--AIELRIFLQTLDEKEEEEEEE-EEEEEKKEEEEKEEEKE 54
E E++ KD +K+R IE + +E E+ +EE +K E +K++ +E
Sbjct: 505 EIERMVKDAEEYAAEDKKRKERIEAK---NEAEEYVYSLEKSLKEEGDKLPEADKKKVEE 561
Query: 55 EEEEEKEEEEEEEEEEEEEK 74
E KEE E E++EE E K
Sbjct: 562 AIEWLKEELEGEDKEEIEAK 581
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 34.6 bits (80), Expect = 0.047
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EL L L+ ++E E E++E+EKK +E + KE E E+E E E +E++ EV
Sbjct: 405 ELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVA 464
Query: 79 RW 80
RW
Sbjct: 465 RW 466
Score = 34.2 bits (79), Expect = 0.063
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E ++ EL + L + E E+E E E+++KE++ +E + +E E E+E E E +
Sbjct: 396 EIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVD 455
Query: 73 EKEVA 77
E ++A
Sbjct: 456 EDDIA 460
Score = 27.2 bits (61), Expect = 9.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 25 QTLDEKEEEEEEEEEEEEK----KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ + E E E + E EK +E++EKE++ +E + +E E E+E E EV
Sbjct: 399 KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDED 457
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 33.5 bits (77), Expect = 0.048
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
Q +E EEEEE+ EEE ++EEEE + EEEE++ + +E EE+E R
Sbjct: 77 QEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
Score = 30.9 bits (70), Expect = 0.37
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EEEEE+ EEE E++EEE + EEEEE + +E EE +E+ +
Sbjct: 83 AEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEF 133
Score = 30.5 bits (69), Expect = 0.55
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEE---EEEEEEEEEKKEEEEKEEEKEEEEE 58
EEE+ + + + + + +LD +E E++EEEE +EEEE EE+ EEEE
Sbjct: 40 EEEREARGRAKRWSEGLS-GVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEE 98
Query: 59 EKEEEEEEEEEEEEEKEVA 77
E+ + EEEEE+ +
Sbjct: 99 EEYQRGPFGEEEEEDGDSY 117
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 34.4 bits (79), Expect = 0.049
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 14 KERAIELRIFLQTLDEKE----------EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+E+ E + FL TL E E E +K EK E K ++E ++
Sbjct: 295 REKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKR 354
Query: 64 EEEEEEEEEEKEVARRWGVQKNRP 87
E E E R + + R
Sbjct: 355 RAAEREINREARQERAAAMARARA 378
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 34.1 bits (79), Expect = 0.050
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA-----RRWG 81
+EE EEEEE E + ++ +E++ +EEEEEE E E E A W
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAALRPKRSLWR 67
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 34.7 bits (80), Expect = 0.050
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
K+ E + + EEK ++++K+E+K+EEE ++EE+ E E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 34.3 bits (79), Expect = 0.060
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
++ E K + +E+ K+++++EK++EEE + EE+ E+A W
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAEAW 773
Score = 33.2 bits (76), Expect = 0.15
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+IF + E + + EE+ K++++KE++KEEE + +E+ E E
Sbjct: 723 KIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 30.8 bits (70), Expect = 0.84
Identities = 39/135 (28%), Positives = 54/135 (40%), Gaps = 24/135 (17%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE----KEEEEEEKEE--------EEEEEEE 69
IF + L E E EE E EEE E E E K+E+E EE EE E+ +
Sbjct: 237 IFTKKLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPD 296
Query: 70 EEEEKEVARRWGVQKNRPAM------------NYDKLSRSLRYYYEKGIMQKVAGERYVY 117
+ +E E R G +K + + +Y + +R RY V E Y
Sbjct: 297 KIDETEEIRVNGKEKIKKDLFWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQY 356
Query: 118 KFCTSVTNGLIDIRF 132
F T ++G I F
Sbjct: 357 FFYTCQSDGKERISF 371
Score = 28.5 bits (64), Expect = 4.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
R + E + + EE+ ++KK++E+K+EE+ + EE+ E E
Sbjct: 725 FRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 34.4 bits (79), Expect = 0.051
Identities = 13/51 (25%), Positives = 35/51 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ +++E +E +++ +EE E E+E + EE +++ ++EEEE+ + ++ ++
Sbjct: 156 KKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQ 206
Score = 33.7 bits (77), Expect = 0.088
Identities = 15/50 (30%), Positives = 34/50 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
K++ ++ +++E ++ +++ EEE E E+E K EE E++ ++EE+E +
Sbjct: 150 KAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Score = 32.5 bits (74), Expect = 0.21
Identities = 13/51 (25%), Positives = 36/51 (70%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ +K+ ++ +++E +E +++++EE + E+E + EE E++ ++EEE++
Sbjct: 148 KGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 31.3 bits (71), Expect = 0.38
Identities = 13/47 (27%), Positives = 33/47 (70%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ ++ +++E +E K++EE+ E ++E + E+ E++ ++EEEE+ +
Sbjct: 154 KTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSD 200
Score = 30.6 bits (69), Expect = 0.76
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE---EEEEEEEEEKEV 76
L L + ++ + +++ ++ KK+E ++ +K++EEE + E+E EE E++ + E
Sbjct: 136 LDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEE 195
Score = 29.0 bits (65), Expect = 2.2
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ K K K + K+ + D++EE E E+E + E+ E++ ++E+EE+ + +
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Query: 61 -------------EEEEEEEEEEEEEKEVA 77
+EEE EE E
Sbjct: 203 DYSQYDGMLVDSSDEEEGEEAPSINYNEDT 232
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 34.2 bits (79), Expect = 0.052
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EK EE+ +EEE+EE E +EEEEEE+EEE++EK
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEK 46
Score = 31.9 bits (73), Expect = 0.24
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ +++ EE+ EEEEEEE + EEE+EEE EEE++EK
Sbjct: 9 LSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEK 46
Score = 30.3 bits (69), Expect = 0.83
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EEK EE+EEEE + EEEEEEE+EEE+KE
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 30.3 bits (69), Expect = 0.85
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
EEK EEEE+EE E EEEE+EE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 29.9 bits (68), Expect = 1.1
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+E+ EEEEEEE + EEEE+EE++EE++E+ ++ + E +EK++
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDI 63
Score = 28.8 bits (65), Expect = 2.4
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+EEEEE E EEE++EE+E+E++++ +K + E +E++ E+
Sbjct: 21 EEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 28.8 bits (65), Expect = 2.7
Identities = 18/48 (37%), Positives = 35/48 (72%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ ++E+EEEE E EEEE++E+EE+++EK ++ + E +E++ E+
Sbjct: 18 EKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 28.8 bits (65), Expect = 2.9
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E+ +E+ E+EEE+E E E+EEEEE+EEE++E+ +
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDK 52
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 33.2 bits (76), Expect = 0.054
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEE---EEKKEEEEKEEEKEEEEE 58
E++ ++ L ++KEEEE++E + E E+E+ +E E E
Sbjct: 96 EKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIE 155
Query: 59 EKEEEEEEEEEEEEEKE 75
+ E +E+E+++E+EE E
Sbjct: 156 DDEVDEDEDDDEDEEDE 172
Score = 31.6 bits (72), Expect = 0.22
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE----- 55
M E+K K K +E + E DE +EEEE++E + E ++++E+ +E
Sbjct: 94 MTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEIL 153
Query: 56 -EEEEKEEEEEEEEEEEEEKEV 76
E++E +E+E+++E+EE+E++
Sbjct: 154 IEDDEVDEDEDDDEDEEDEEDK 175
Score = 27.8 bits (62), Expect = 3.9
Identities = 15/50 (30%), Positives = 35/50 (70%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
LDE +EE + E+++ K ++++ + EE +E++ + +E++EEEE+++
Sbjct: 84 LDEIDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVD 133
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 33.9 bits (78), Expect = 0.055
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E ++R L+ L +K++EEEE E ++ E E+ +++ KEE++ E EE
Sbjct: 106 EIRSDVRRQLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 31.6 bits (72), Expect = 0.26
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE-KEE 62
K + + + +LR FL ++EEE E E E+ E+ K++ +EE K E
Sbjct: 99 IKSDPNYEIRSDVRRQLR-FLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAE 157
Query: 63 EEE 65
EE
Sbjct: 158 SEE 160
Score = 27.0 bits (60), Expect = 9.1
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+K K E+ R E+ E E+ E+ + +++ KEE+K E EE +
Sbjct: 120 QKQKEEEERR-----------VERRRELGLEDPEQLRLKQKAKEEQKAESEETR 162
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 34.3 bits (79), Expect = 0.056
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEE-----KEEEEEEKEEEEEEEEEEEEEKEVA 77
D+ EE+ ++ EE KK +EKE EEEEE+EEEEEEEEE E +
Sbjct: 372 RDKIATEEDVKDIEELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVMMM 427
Score = 29.3 bits (66), Expect = 2.3
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EL+ FL+ + E EEEEE EEEEEE+EEE E E+
Sbjct: 386 ELKKFLKEKEHPVVERWAAEEEEE-----------EEEEEEEEEEPVAEVMMMPAPEMQ 433
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 33.0 bits (74), Expect = 0.058
Identities = 27/47 (57%), Positives = 31/47 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E EEEEE E EE+ EEE + EE+ EEE E EE EEE E E E E
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 32.6 bits (73), Expect = 0.089
Identities = 30/65 (46%), Positives = 36/65 (55%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
K KG + + D++ EEEEE E EEE +EE E EEE EEE E +E EEE
Sbjct: 41 KGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEP 100
Query: 68 EEEEE 72
E E E
Sbjct: 101 EPEPE 105
Score = 32.2 bits (72), Expect = 0.11
Identities = 28/53 (52%), Positives = 30/53 (56%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
E EEE EEE E EE+ EEE + EE EEE E E E E E E E E E G
Sbjct: 71 EPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEPG 123
Score = 31.1 bits (69), Expect = 0.27
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
KG + + ++ + + ++E EEEEE + EEE +EE + EEE E+E E EE E
Sbjct: 38 KGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGE 97
Query: 70 EEEEKE 75
EE E E
Sbjct: 98 EEPEPE 103
Score = 30.3 bits (67), Expect = 0.49
Identities = 28/70 (40%), Positives = 35/70 (50%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+K G+ K T ++E EEEEE E +EE E+E E EEE EE+ E
Sbjct: 32 ADKGITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPE 91
Query: 63 EEEEEEEEEE 72
EE EEE E
Sbjct: 92 PEETGEEEPE 101
Score = 30.3 bits (67), Expect = 0.49
Identities = 26/48 (54%), Positives = 29/48 (60%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E EEE E EEE EE+ E EE EE+ E E E E E E E E E E E
Sbjct: 74 EEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 29.9 bits (66), Expect = 0.75
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E+E E EEE EEE + EEE +EE + EE E+E E E E E E E E
Sbjct: 66 EEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPE 113
Score = 28.4 bits (62), Expect = 2.0
Identities = 28/71 (39%), Positives = 35/71 (49%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
KV D + E + E+E EEE E EEE ++E E +E +EE E E E E
Sbjct: 49 KVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEP 108
Query: 65 EEEEEEEEEKE 75
E E E E E E
Sbjct: 109 EPEPEPEPEPE 119
Score = 28.0 bits (61), Expect = 2.8
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+E E EEE EEE + EE +EE + E E E E E E E E E E A
Sbjct: 77 EEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEPGAA 125
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 33.6 bits (77), Expect = 0.059
Identities = 10/49 (20%), Positives = 27/49 (55%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E + +++ EK + K + E ++ +E++EE+++ ++K+V
Sbjct: 30 PEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKV 78
Score = 31.7 bits (72), Expect = 0.27
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
D+ E + ++K E+ K K + E ++ +E++EE++K ++ +Q N
Sbjct: 26 DKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPLQVNP 84
Score = 30.1 bits (68), Expect = 0.81
Identities = 16/75 (21%), Positives = 31/75 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ K KDKG + K + + E +K +EK+EEK++ +++K
Sbjct: 19 EKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKV 78
Query: 62 EEEEEEEEEEEEKEV 76
+ + + E
Sbjct: 79 PLQVNPAQLFVDDEY 93
Score = 27.1 bits (60), Expect = 8.3
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
RA + L++ K +++ E K ++K EK + + + E ++ +EK+
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Score = 26.7 bits (59), Expect = 9.3
Identities = 9/58 (15%), Positives = 26/58 (44%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
E E+ + +++ E K +++ E+ + + + E +K ++ +K +P
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 34.3 bits (79), Expect = 0.060
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 2 EEEKVEKDK---GREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
E K++K + + + + EEE + E E KE EE E E+E
Sbjct: 43 LESKIKKLGIPLKDTGGK----PDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEIN 98
Query: 59 EKEEE----EEEEEEEEEEKEVARRW 80
E EE +EE+ +E E
Sbjct: 99 ELEEWLNVLDEEKSFLDENLEELSEL 124
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 33.9 bits (78), Expect = 0.061
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 9/76 (11%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEE---EEEEEEEEEKKEEEEKEEEKEEEE-----EE 59
KDKG KE++I ++ TL + E E +E E+ E KE+ EK + K + E E
Sbjct: 484 KDKGTGKEQSITIQ-GASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAE 542
Query: 60 KEEEEEEEEEEEEEKE 75
K+ +E +++ EE+KE
Sbjct: 543 KQLKELKDKISEEKKE 558
>gnl|CDD|235206 PRK04031, PRK04031, DNA primase; Provisional.
Length = 408
Score = 34.0 bits (79), Expect = 0.061
Identities = 19/69 (27%), Positives = 40/69 (57%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
VE+ +E +A+ ++ ++ E+ ++ ++ E+ K+EEE+ E+E E+ E +E+E
Sbjct: 248 VEELTKKEIAKALRNKVPVEQYLEELGKKAQKAAEKVKEEEEKPEKEPAEQPEPEEKEPA 307
Query: 66 EEEEEEEEK 74
E+EE
Sbjct: 308 PVPAEKEET 316
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 34.0 bits (79), Expect = 0.062
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+D +EE +E+ E +E +E+EK+ E+ E
Sbjct: 510 IDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.6 bits (78), Expect = 0.093
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ EEE +E+ + KE E++E++ EK E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.12
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ EEE KE+ E KE EE+EK+ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.9 bits (76), Expect = 0.16
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ EEE K++ E ++ EE+E+K E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.5 bits (75), Expect = 0.23
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ EEE +E+ E +E E++E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 0.24
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+ EEE +E+ E +E +E+E++ ++ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 0.25
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+ EEE +E+ E +E EEKE++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.7 bits (73), Expect = 0.33
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ EEE +++ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 0.43
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ +EE +E+ E KE EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 0.44
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ ++E +E+ E ++ EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 0.46
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + EE+ +E+ E +E EE+E++ EK
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 31.3 bits (72), Expect = 0.48
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+ EEE +E+ + +E EE++++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 0.55
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ E++ KE+ + +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.5 bits (70), Expect = 0.84
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EEE KE+ E +E EE+E++ E+ E+
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 30.2 bits (69), Expect = 1.0
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ EE+ +++ E +E +E+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 33.4 bits (77), Expect = 0.062
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 16/92 (17%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEE----------EEEEEEKKEEEEKEEE 52
E+K++++ G K + +E+ I DE E EE +E++K + E
Sbjct: 93 EKKLKEEYG-VKVKDVEVEI-----DEDLESNNFDIKEVNVTLKEESKEKQKSKVEPVVI 146
Query: 53 KEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+ + KEEEEE EE E+ + +A + + K
Sbjct: 147 DTQTSKPKEEEEESEEAEKIKNFLADEYNIPK 178
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 33.7 bits (78), Expect = 0.065
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
R+ + K E + EEE++ E E EE E + E
Sbjct: 257 RLAYERAKAKRAEILAQRAEEEEESSEGAAETIEEPELDLET 298
Score = 33.4 bits (77), Expect = 0.095
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
K + E ++ EEEEE E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 31.8 bits (73), Expect = 0.27
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
K+ E + +EEEE + E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 31.8 bits (73), Expect = 0.32
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 48 EKEEEKEEEEEEKEEE-EEEEEEEEEEKEVA 77
K E + E+EEE E E EE E+
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPELD 295
Score = 29.1 bits (66), Expect = 1.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
K + + + EEEE+ E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 28.7 bits (65), Expect = 2.5
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE 47
ERA R + +EEEE E E +E E
Sbjct: 261 ERAKAKRAEILAQRAEEEEESSEGAAETIEEPE 293
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 32.0 bits (72), Expect = 0.065
Identities = 10/35 (28%), Positives = 30/35 (85%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E +E+ + + ++EE++++++EE+++E+++E++ EV
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 31.7 bits (71), Expect = 0.099
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E EE+ + ++EE+ ++E+EE ++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.7 bits (71), Expect = 0.11
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E EE+ + + EEE+ ++E EE+++E ++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.3 bits (70), Expect = 0.13
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E EE+ + +EE++++ E+EE++ E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.3 bits (70), Expect = 0.14
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E EE + + EEE +++E+E++++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 31.3 bits (70), Expect = 0.15
Identities = 11/34 (32%), Positives = 26/34 (76%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E EE+ + + +EEE ++E++E++ E+++E+ +E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.22
Identities = 10/34 (29%), Positives = 28/34 (82%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E EE+ + +EEE +++++EE+++++++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.23
Identities = 10/37 (27%), Positives = 30/37 (81%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E E+ + + +EE+++++E++E+++E+++E+++E V
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPV 43
Score = 30.5 bits (68), Expect = 0.25
Identities = 10/36 (27%), Positives = 28/36 (77%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
FL+ ++ + + +EEE+++++ EE++ E++ E+++E
Sbjct: 5 FLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.27
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E EE+ + +E+E++ +E+EE+ +E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.35
Identities = 10/38 (26%), Positives = 29/38 (76%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
L L+ +E+ + + +EEE+ +E+E++++++++E++ E
Sbjct: 3 LHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.38
Identities = 10/39 (25%), Positives = 31/39 (79%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
TL E EE+ + + +E++++++++EE ++E+++++++E
Sbjct: 2 TLHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.4 bits (65), Expect = 0.55
Identities = 10/34 (29%), Positives = 27/34 (79%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E EE+ + + +EE++ +E++E+++E+ +E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.4 bits (65), Expect = 0.69
Identities = 9/34 (26%), Positives = 28/34 (82%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
E EE+ + + +++E+++ E+E++++E++ E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 28.2 bits (62), Expect = 1.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY 91
E E++ + + +EEE +++E+EE+++E++ E V AM Y
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPSFGEAMAY 52
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 33.8 bits (78), Expect = 0.066
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ + E+ + +E E +++ EEE + + EEE +
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 31.8 bits (73), Expect = 0.24
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
D E+ + +E E E+ EEE + + +EE + +
Sbjct: 7 DLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 29.2 bits (66), Expect = 1.7
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
++ + +E E +EK EE+ + + EEE + +
Sbjct: 9 NEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 27.2 bits (61), Expect = 7.9
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ + E + +E E +E+ EEE + + EEE
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQG 46
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 34.1 bits (79), Expect = 0.066
Identities = 18/54 (33%), Positives = 23/54 (42%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
R KE L E E E E EK+E E+ E E+ +E+EEE
Sbjct: 825 RYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 29.1 bits (66), Expect = 2.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+ ++ + + + + E E E+EE EK E EK EE+EE
Sbjct: 827 KEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEE 877
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 34.2 bits (79), Expect = 0.067
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K+EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 33.0 bits (76), Expect = 0.12
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++ +++EE E + +EE EEEEE +
Sbjct: 310 RRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 33.0 bits (76), Expect = 0.15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
K+EE+ E K +EE EEEEE ++
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDI 341
Score = 32.6 bits (75), Expect = 0.16
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+++EE E K +EE +EEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 32.6 bits (75), Expect = 0.18
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 32.2 bits (74), Expect = 0.28
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
K+EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.8 bits (73), Expect = 0.32
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ +++EE E + +EE EEEEE
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.1 bits (71), Expect = 0.52
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+ ++EEE E K +EE EEE+E +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.3 bits (69), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+ ++EEE E K +EE EE+EE +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.2 bits (66), Expect = 2.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ ++EEE + + +EE EEEE+ +
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEESI 338
Score = 28.8 bits (65), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
++EEE E K +E+ EEEE+ +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.8 bits (65), Expect = 3.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKE 54
++EE E + +E+ EEE+E +
Sbjct: 315 QEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.8 bits (65), Expect = 3.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
K+EEE E + ++E E+EEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 3.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
++EEE + + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 4.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
++EEE E + +EE +EEE+ +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 33.9 bits (78), Expect = 0.068
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEE---KKEEEEKEEEKEEEEEE 59
+ + KG E I + E + EE + E+ + EE ++ E+ E +
Sbjct: 67 LDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELD 126
Query: 60 KEEEEEEEEEEEEE 73
+E E+ E+ EE E
Sbjct: 127 EELEDLEDLLEELE 140
Score = 28.1 bits (63), Expect = 4.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E EE E ++E E E E E+ EE E E E+ +V +
Sbjct: 231 ISELEEVIAEIQDELESL-RSELEALAEKIAEELLAVREILEIEKALGDVLSK 282
Score = 28.1 bits (63), Expect = 4.9
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 4 EKVEKDKGREKERAIELRIF---------LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE 54
E G E ++ + + + L+E E E E + E E E+
Sbjct: 178 EDEVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEV 237
Query: 55 EEEEEKEEEEEEEEEEEEEKEVA 77
E + E E E E +++A
Sbjct: 238 IAEIQDELESLRSELEALAEKIA 260
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 30.8 bits (70), Expect = 0.071
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEK 74
EEEK E+EEE E+EEE EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 28.1 bits (63), Expect = 0.56
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEE 63
EEEK+E+EE+ E++EE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.1 bits (63), Expect = 0.60
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEE 69
EEEK E++EE E+E+E EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.3 bits (61), Expect = 0.94
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVAR 78
EEE+ E EEE E+EEE EE+ EV R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.9 bits (60), Expect = 1.6
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEE 64
EE+K E+E+E E EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 26.5 bits (59), Expect = 2.2
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEK 53
+EE+ E+EEE E+++E EE+ E K
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 26.2 bits (58), Expect = 2.4
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEK 53
E+E+ E+EEE E+E++ EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.2 bits (58), Expect = 2.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKE 50
+EK E+EEE E+EEE +E+ E +
Sbjct: 23 EEKREDEEENEDEEEGEEQSEVK 45
Score = 26.2 bits (58), Expect = 2.7
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEE 56
EEE+ E+EEE ++EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 25.8 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEE 68
EEE++E+E+E E+EE+ EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 25.8 bits (57), Expect = 3.5
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEE 57
EEE+ E+EE+ E+EE+ EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 25.4 bits (56), Expect = 6.0
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEK 60
EEE+ E +EE E EEE EE+ E K
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 25.0 bits (55), Expect = 8.0
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 55 EEEEEKEEEEEEEEEEEEEKEVARR 79
EEE+ ++EEE E+EEE EE+ +R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 24.6 bits (54), Expect = 9.6
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEK 60
EEE+ E+++E E++EE +E+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 33.2 bits (76), Expect = 0.071
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 25 QTLDEKEEEEEEEEEE--EEKKEEEEKEEEKEEEEEEKEEEEEEEEE-EEEEKEVARRW 80
Q L E +EE E+ EE E + E E+ +E+ + E + EE E EE KE+A+
Sbjct: 86 QQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKEL 144
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 31.9 bits (73), Expect = 0.072
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 40 EEEKKEEEEKEEEKEEEEEE 59
E K+EE+KEEE+EE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.8 bits (70), Expect = 0.17
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 44 KEEEEKEEEKEEEEEEKEEEE 64
E K+EEK+EEEEE+ +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
Score = 30.8 bits (70), Expect = 0.20
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEE 63
E +KEE+KEEEEEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.26
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 35 EEEEEEEEKKEEEEKEEE 52
E ++EEKKEEEE+E +
Sbjct: 78 AAEAKKEEKKEEEEEESD 95
Score = 30.4 bits (69), Expect = 0.28
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 52 EKEEEEEEKEEEEEEEEEEE 71
E ++EEK+EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.0 bits (68), Expect = 0.32
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 51 EEKEEEEEEKEEEEEEEEEE 70
+ ++EE+KEEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 0.69
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 55 EEEEEKEEEEEEEEEEEEE 73
E +KEE++EEEEEE ++
Sbjct: 78 AAEAKKEEKKEEEEEESDD 96
Score = 28.1 bits (63), Expect = 1.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEE 67
E +KEE++EE+EEE +++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDDD 97
Score = 28.1 bits (63), Expect = 1.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 51 EEKEEEEEEKEEEEEEEEEEEEE 73
E +++E++EEEEEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 27.7 bits (62), Expect = 2.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEE 72
E ++E+++EEEEEE +++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDDD 97
Score = 27.3 bits (61), Expect = 2.7
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEE 52
E ++EE+K+EEEE+ ++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDD 96
Score = 27.3 bits (61), Expect = 3.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 36 EEEEEEEKKEEEEKEEEKEE 55
E ++E+K+EEE+EE ++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 27.3 bits (61), Expect = 3.6
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 29 EKEEEEEEEEEEEEKKEEEE 48
E ++EE++EE++EE +
Sbjct: 76 AAAAEAKKEEKKEEEEEESD 95
Score = 27.3 bits (61), Expect = 3.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEE 69
E ++EE+++EEEEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 26.5 bits (59), Expect = 6.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 39 EEEEKKEEEEKEEEKEEEEE 58
E KKEE+++EEE+E +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.5 bits (59), Expect = 6.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 53 KEEEEEEKEEEEEEEEEEEEEKE 75
E ++EE++EEEEEE +
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDD 96
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 33.4 bits (77), Expect = 0.077
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E++ EEE E+ E+KK +E++++ E E EE + E+ P
Sbjct: 8 EEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPEDLSC-----------LPT 56
Query: 89 MNYDKLSRSLRYY-YEKGIMQKVAGERYVYKFCTSVTNGLIDIRFYRSLKPNFTDFYP 145
+ + RS Y E+ + V TNG++ +R L + P
Sbjct: 57 LTLSDIPRSGDEYPLEEEKVGDV-----PVLHHDVDTNGIVYVRLVFDLNALPEELLP 109
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.5 bits (77), Expect = 0.079
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ + + EL+ + L +KEE+ + E+ + E + +E EK E E EE E
Sbjct: 66 NQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELE 125
Query: 67 EEEEEEEKEVA 77
++ + E VA
Sbjct: 126 KQLDNELYRVA 136
Score = 30.1 bits (68), Expect = 1.2
Identities = 21/78 (26%), Positives = 34/78 (43%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E ++ E R + L +EE ++EE+ + + E+ E + EE EK
Sbjct: 54 LLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKA 113
Query: 62 EEEEEEEEEEEEKEVARR 79
E E EE EK++
Sbjct: 114 LSARELELEELEKQLDNE 131
Score = 29.7 bits (67), Expect = 1.5
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+++ E + RE+ + E R+ + E+ + E + +E E+ +E E EE E
Sbjct: 66 NQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELE 125
Query: 62 EEEEEE-------EEEEEEKEVARR 79
++ + E E+ K + +
Sbjct: 126 KQLDNELYRVAGLTPEQARKLLLKL 150
Score = 28.1 bits (63), Expect = 4.3
Identities = 17/94 (18%), Positives = 39/94 (41%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ E+ E+ L L+ ++ E E EE EK+ + E E+ +
Sbjct: 88 QKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLL 147
Query: 65 EEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSL 98
+ + E E+E A+R + + ++ ++++
Sbjct: 148 LKLLDAELEEEKAQRVKKIEEEADLEAERKAQNI 181
Score = 27.8 bits (62), Expect = 6.9
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++ +K+ + E A+ L + ++ +E E EE + EEE+ +KEE+ + + E+
Sbjct: 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEK 99
Query: 64 EEEEEEEEEEKE 75
+ E + EE+E
Sbjct: 100 LDNLENQLEERE 111
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.2 bits (76), Expect = 0.081
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ E+E+E E ++ ++KEE + ++++E EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 33.2 bits (76), Expect = 0.083
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
L +++ E+E+E + E+ K++E+ E +++KE EE
Sbjct: 66 KDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 32.0 bits (73), Expect = 0.20
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ E+E+E E E+ ++++E E ++K+E EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 30.5 bits (69), Expect = 0.60
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
DEKE E E+ KK+EE + ++K+E EE K +++ ++ +E++
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 28.6 bits (64), Expect = 2.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K E+E++ E E+ +++EE E ++++E E
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEME 105
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 33.3 bits (77), Expect = 0.085
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
R+K + EL + L+E+ +E +EE + ++E K K ++++EK+E + + +
Sbjct: 30 AQRKKSQKGELEVTN--LNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAK 87
Query: 70 EE 71
+
Sbjct: 88 SK 89
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 31.0 bits (71), Expect = 0.087
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E EEE+E E+ E E+EE+EEE+++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDD 72
Score = 28.7 bits (65), Expect = 0.72
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E E+EEE E+ E E EE+EEE+++++ +
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 28.3 bits (64), Expect = 0.98
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+ E EEEEE E E E++E+E+E+++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDD 72
Score = 28.0 bits (63), Expect = 1.1
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+ E EEEEE E+ + E+E++EE++++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 27.6 bits (62), Expect = 1.5
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ E EEEE+ E+ E E+E++EEE++ ++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 27.2 bits (61), Expect = 2.1
Identities = 12/30 (40%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 40 EEEKKEEEEKEE-EKEEEEEEKEEEEEEEE 68
+ E +EEEE E+ E E+EE+E+E+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 27.2 bits (61), Expect = 2.5
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
D E EEEEE E+ + E+EE EEE ++++ +
Sbjct: 43 DSDAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 26.4 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ + EEEE+ E+ E E+EE EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 25.6 bits (57), Expect = 8.0
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKE 75
E +EEEE E E E+EE+EEE++ +
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDD 71
Score = 25.3 bits (56), Expect = 9.8
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+ E EEEEE ++ E ++EE EEE+++ + +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 33.4 bits (76), Expect = 0.087
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ +E E + ++ ++ E E E E E E
Sbjct: 203 PPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPG 249
Score = 33.4 bits (76), Expect = 0.090
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E ++ + E+ EE E E E +
Sbjct: 146 PHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPP 193
Score = 33.0 bits (75), Expect = 0.11
Identities = 8/47 (17%), Positives = 16/47 (34%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ +E E + ++ ++ E E+E E E E
Sbjct: 200 SSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 32.6 bits (74), Expect = 0.16
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E ++ + E+ EE E E E +
Sbjct: 143 HPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSP 190
Score = 32.6 bits (74), Expect = 0.17
Identities = 8/73 (10%), Positives = 11/73 (15%), Gaps = 6/73 (8%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E V A EL E E +
Sbjct: 97 SESVGSPTPSPSGSAEELA------SGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPA 150
Query: 63 EEEEEEEEEEEKE 75
E ++
Sbjct: 151 PPESHNPSPNQQP 163
Score = 32.2 bits (73), Expect = 0.20
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + +E E + ++ ++ E E+E E E+E
Sbjct: 196 ETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243
Score = 32.2 bits (73), Expect = 0.22
Identities = 10/50 (20%), Positives = 15/50 (30%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
D EE E E E + E + +E E + + A
Sbjct: 173 DSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQA 222
Score = 32.2 bits (73), Expect = 0.25
Identities = 8/69 (11%), Positives = 11/69 (15%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ E+ R E Q E E+ E E
Sbjct: 71 SDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPES 130
Query: 67 EEEEEEEKE 75
Sbjct: 131 PASHSPPPS 139
Score = 31.5 bits (71), Expect = 0.35
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ +E E + ++ ++ E E+E E E E R
Sbjct: 202 PPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHR 251
Score = 31.5 bits (71), Expect = 0.37
Identities = 6/47 (12%), Positives = 10/47 (21%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E ++ + E+ EE E
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPT 182
Score = 31.5 bits (71), Expect = 0.39
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ +E E + ++ ++ + E+E E E E
Sbjct: 200 SSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 31.5 bits (71), Expect = 0.40
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q+ + +E + + ++ ++ E E+E E E +
Sbjct: 194 QSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 31.1 bits (70), Expect = 0.46
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E ++ + E+ EE E E E
Sbjct: 140 PPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPE 186
Score = 31.1 bits (70), Expect = 0.48
Identities = 4/47 (8%), Positives = 9/47 (19%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E ++ + E+ +E
Sbjct: 131 PASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 31.1 bits (70), Expect = 0.49
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+++ + E+ +E E E E + + E +
Sbjct: 160 NQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Score = 31.1 bits (70), Expect = 0.50
Identities = 6/46 (13%), Positives = 10/46 (21%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E E ++ + E+ EE E
Sbjct: 134 HSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPE 179
Score = 31.1 bits (70), Expect = 0.51
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E E E E + + E + +E E + ++
Sbjct: 176 EEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAP 223
Score = 31.1 bits (70), Expect = 0.52
Identities = 6/48 (12%), Positives = 12/48 (25%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E ++ + ++ EE E E +
Sbjct: 140 PPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEP 187
Score = 31.1 bits (70), Expect = 0.54
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++ E + E EE + E+E+ + E E
Sbjct: 66 HRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEE 113
Score = 30.7 bits (69), Expect = 0.63
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E ++ + E+ EE E E E + + E
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETP 198
Score = 30.3 bits (68), Expect = 0.86
Identities = 6/50 (12%), Positives = 6/50 (12%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE E E E A
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPA 150
Score = 30.3 bits (68), Expect = 1.1
Identities = 5/46 (10%), Positives = 5/46 (10%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E EE E E
Sbjct: 95 SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSP 140
Score = 29.9 bits (67), Expect = 1.1
Identities = 7/58 (12%), Positives = 17/58 (29%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
+ E + E E + ++ ++ E E+E + +R
Sbjct: 194 QSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHR 251
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/48 (18%), Positives = 17/48 (35%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ E + E EE E+EE+ + + +E+A
Sbjct: 68 QTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELA 115
Score = 29.9 bits (67), Expect = 1.3
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ ++ + E+ EE E E E + + E
Sbjct: 153 ESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
Score = 29.6 bits (66), Expect = 1.4
Identities = 10/51 (19%), Positives = 13/51 (25%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E + E EE EK+E + E EE
Sbjct: 66 HRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELAS 116
Score = 29.6 bits (66), Expect = 1.8
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ EE E + E + + E + +E E +
Sbjct: 170 SHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQS 216
Score = 29.2 bits (65), Expect = 2.0
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ EE E E E + + E + +E E
Sbjct: 169 PSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGE 213
Score = 29.2 bits (65), Expect = 2.2
Identities = 4/47 (8%), Positives = 10/47 (21%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E ++ + E+ EE +
Sbjct: 134 HSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEP 180
Score = 29.2 bits (65), Expect = 2.3
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E + E EE + E++E + E
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSA 111
Score = 29.2 bits (65), Expect = 2.4
Identities = 6/48 (12%), Positives = 13/48 (27%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ + E+ +E E E E + + E
Sbjct: 155 HNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSP 202
Score = 28.8 bits (64), Expect = 2.7
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ + E + + EE + EKEE + E
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPS 106
Score = 28.8 bits (64), Expect = 2.9
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E E + + E + +E E + ++ ++ V
Sbjct: 184 EPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAV 231
Score = 28.4 bits (63), Expect = 3.8
Identities = 5/48 (10%), Positives = 14/48 (29%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E+ EE + E E + + + + ++
Sbjct: 164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
Score = 28.4 bits (63), Expect = 3.9
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E+ EE E E E + E + +E +
Sbjct: 167 LQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEP 214
Score = 28.0 bits (62), Expect = 4.7
Identities = 4/45 (8%), Positives = 12/45 (26%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E + + + + +E E + ++
Sbjct: 183 SEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNT 227
Score = 28.0 bits (62), Expect = 4.8
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ EE E E + + + E + +E E +
Sbjct: 170 SHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTP 219
Score = 28.0 bits (62), Expect = 4.9
Identities = 9/51 (17%), Positives = 15/51 (29%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
Q + E + E EE ++EE + E E+
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEEL 114
Score = 27.6 bits (61), Expect = 6.2
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ E + +E + + ++ ++ E E+E E R
Sbjct: 193 PQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 27.6 bits (61), Expect = 6.4
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
++ + E + E E+ EKEE + E
Sbjct: 62 AEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSP 107
Score = 27.6 bits (61), Expect = 6.5
Identities = 7/49 (14%), Positives = 16/49 (32%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+ + E + E ++ ++EE+ + E A
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSA 111
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 32.4 bits (74), Expect = 0.089
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EE E++++E KE E++E + K+E++E++E++ EK
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
Score = 32.4 bits (74), Expect = 0.089
Identities = 11/34 (32%), Positives = 26/34 (76%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
EE E+E+++ +E +E+E + ++EK+E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 32.4 bits (74), Expect = 0.10
Identities = 13/33 (39%), Positives = 26/33 (78%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
EE E+E++E ++ EE+E + K+E++E+KE++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 32.4 bits (74), Expect = 0.11
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
EE E+E+KE ++ EEKE + +KE++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.18
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE E+E++E +E E++E + ++E+KE++E++ E+ +K+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKST 136
Score = 31.7 bits (72), Expect = 0.21
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
EE E+E++E KE EEKE K ++E+++++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.9 bits (70), Expect = 0.32
Identities = 13/61 (21%), Positives = 35/61 (57%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+ ++E++E +E EEK+ + K+E+KE++E++ E+ +++ + K ++ +
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 88 A 88
Sbjct: 154 K 154
Score = 30.5 bits (69), Expect = 0.44
Identities = 14/47 (29%), Positives = 32/47 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+E E+E++E +E E+KE + ++EK+E++E+K E+ +++ +
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/50 (26%), Positives = 33/50 (66%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
L +E E+E++E +E +E+E + +KE++E+++++ E+ +++ K
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTT 139
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EE ++E+KE +E +E+E + ++E++EK+ +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 28.6 bits (64), Expect = 2.0
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE E+E++E +E EE+E + ++E++++ ++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 27.4 bits (61), Expect = 5.2
Identities = 9/36 (25%), Positives = 27/36 (75%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
+F + +++++E +E EE+E + +++++EK+E++
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 33.1 bits (76), Expect = 0.092
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEE 70
EEEEEEE++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 32.3 bits (74), Expect = 0.20
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 52 EKEEEEEEKEEEEEEEEEEEEE 73
EEEEEEE+
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEED 302
Score = 31.9 bits (73), Expect = 0.29
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 53 KEEEEEEKEEEEEEEEEEEEE 73
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 0.50
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 46 EEEKEEEKEEEEEEKEEEEEE 66
EE+EEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 0.86
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 47 EEKEEEKEEEEEEKEEEEEEE 67
E+EEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 1.2
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 41 EEKKEEEEKEEEKEEEEEE 59
+EEEEEE
Sbjct: 283 AAAAAAAAAAPAEEEEEEE 301
Score = 29.6 bits (67), Expect = 1.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 51 EEKEEEEEEKEEEEEEEEEEE 71
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 1.5
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 37 EEEEEEKKEEEEKEEEKEEEE 57
+EEE+EE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.2 bits (66), Expect = 2.1
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 56 EEEEKEEEEEEEEEEEEEKEV 76
EEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.8 bits (65), Expect = 2.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEE 65
EEE+EEE++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 3.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 39 EEEEKKEEEEKEEEKEEEEEE 59
EE+EEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 5.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 33 EEEEEEEEEEKKEEEEKEEE 52
EEEE+EE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEED 302
Score = 27.7 bits (62), Expect = 5.6
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 32 EEEEEEEEEEEKKEEEEKEEE 52
+EEEE+E++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 6.0
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 38 EEEEEKKEEEEKEEEKEEEEE 58
EEE+EEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 8.5
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 29 EKEEEEEEEEEEEE 42
EEEEEEE
Sbjct: 288 AAAAAPAEEEEEEE 301
Score = 26.9 bits (60), Expect = 9.8
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEE 51
++EEEE+++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 33.8 bits (78), Expect = 0.092
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 2 EEEKVEK---DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
E ++E D+ R K + I D + EE + E E + +E+E+ + ++
Sbjct: 30 EYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDEREDIYAQIDK 89
Query: 59 EKEEEEEEEEEEEEE---------KEVARRW 80
++E E E+ +E KE ARR+
Sbjct: 90 LEKEAYEILEKVLDEILPEAFAIVKETARRF 120
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 33.5 bits (76), Expect = 0.095
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 28 DEKEEEEEEEEEEEEKKEEEE-----KEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGV 82
+E EEEE+EE EE++E EE K E+K + + +E ++EE+E E EE+E +R +
Sbjct: 108 NETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSL 167
Query: 83 QKNRPAMNYDKLSRSLRYYYEKG 105
++N KL + + G
Sbjct: 168 EENNGEFMTHKLKHTENTFSRGG 190
Score = 32.7 bits (74), Expect = 0.14
Identities = 26/106 (24%), Positives = 43/106 (40%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
D G E E E + +E EE E + E+K + EE ++EE+E E EEEE+
Sbjct: 103 DSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKP 162
Query: 69 EEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGER 114
+ +E + K + N + E G + ++
Sbjct: 163 KRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQK 208
Score = 32.3 bits (73), Expect = 0.22
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++EE + EEEE+++++EE + + EEEE++ +EE E E E
Sbjct: 222 KREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAE 268
Score = 32.3 bits (73), Expect = 0.24
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+ E + E Q E EE +++ EE +K EE+E+ +++EE +++ EEEE
Sbjct: 192 EGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEE 251
Query: 68 EEEEEEKEVARRWGVQKNRPAMNYDKLS 95
+ +E+ RR + R + D LS
Sbjct: 252 KRRLKEEIERRRAEAAEKRQKVPEDGLS 279
Score = 30.4 bits (68), Expect = 0.89
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
M+E+ +++ E+E E R + ++E E + E++ + + EE ++EEKE E EE+
Sbjct: 100 MQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEE 159
Query: 61 EEEEEEEEEE 70
E+ + EE
Sbjct: 160 EKPKRGSLEE 169
Score = 30.4 bits (68), Expect = 1.00
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+ ++ K ++++ D E E EEEE+E+ EE +E E+ E + E++
Sbjct: 79 ERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQK 138
Query: 64 EEEEEEEEEEKE 75
+ + EE +KE
Sbjct: 139 NDWRDAEECQKE 150
Score = 28.8 bits (64), Expect = 2.8
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+G + E E Q E E EE +++ E++ + +EEE+ ++EE + + EEE
Sbjct: 191 AEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEE 250
Query: 69 EEEEEKEVARR 79
E+ KE R
Sbjct: 251 EKRRLKEEIER 261
Score = 28.8 bits (64), Expect = 2.9
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K + E E +E E+ ++++++ E +E +K+ EE K EEEE+
Sbjct: 178 KLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRR 237
Query: 70 EEEEKEVARRWGVQKNRP 87
++EE + R +K R
Sbjct: 238 KQEEADRKSREEEEKRRL 255
Score = 27.3 bits (60), Expect = 9.3
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 12 REKERAIELRIFLQTLDEKEEE--EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
RE+ R L+ E + ++ E + +E+ E + EEEEKEE EE EE
Sbjct: 66 REERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREE 125
Query: 70 EEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGE 113
EE + V + R A K + E+ + E
Sbjct: 126 VEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEE 169
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 33.6 bits (76), Expect = 0.098
Identities = 28/73 (38%), Positives = 35/73 (47%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E++E++ E IE I + EE EE EE E+ EE EE EE EE EE
Sbjct: 1043 EEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEEN 1102
Query: 64 EEEEEEEEEEKEV 76
EE EE E+
Sbjct: 1103 VEENAEENAEENA 1115
Score = 33.6 bits (76), Expect = 0.11
Identities = 27/72 (37%), Positives = 36/72 (50%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+ +++ E E IE I + EE EE EE E+ EE EE EE EE EE
Sbjct: 1062 EEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEE 1121
Query: 64 EEEEEEEEEEKE 75
++E EE +E
Sbjct: 1122 YDDENPEEHNEE 1133
Score = 32.5 bits (73), Expect = 0.25
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E +E I + EE EE EE +++ EE EE EE +EE E
Sbjct: 984 EENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVE 1043
Query: 63 EEEEEEEEEEEKEV 76
E EE EE E+ +
Sbjct: 1044 EIEENAEENVEENI 1057
Score = 32.1 bits (72), Expect = 0.30
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E +E + + EE EE EE ++ +EE EE EE EE +E
Sbjct: 980 EENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDE 1039
Query: 63 EEEEEEEEEEEKEV 76
E EE EE E+ V
Sbjct: 1040 ENVEEIEENAEENV 1053
Score = 32.1 bits (72), Expect = 0.30
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E +E I + EE EE EE E+ +EE EE +E EE EE
Sbjct: 996 EENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055
Query: 63 EEEEEEEEEEEKEV 76
EE EE +E+ V
Sbjct: 1056 NIEENIEEYDEENV 1069
Score = 32.1 bits (72), Expect = 0.32
Identities = 28/74 (37%), Positives = 37/74 (50%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E IE + + EE EE +EE ++ EE EE EE EE EE
Sbjct: 988 EENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEE 1047
Query: 63 EEEEEEEEEEEKEV 76
EE EE E+ +
Sbjct: 1048 NAEENVEENIEENI 1061
Score = 31.7 bits (71), Expect = 0.38
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE +E++ E +E ++E EE EE EE EE +E +E +EE EE
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEE 1071
Query: 63 EEEEEEEEEEE 73
EE EE EE
Sbjct: 1072 IEENIEENIEE 1082
Score = 31.3 bits (70), Expect = 0.54
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E +E + + EE +EE EE E+ EE EE EE EE EE
Sbjct: 992 EENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEE 1051
Query: 63 EEEEEEEEEEEK 74
EE EE E+
Sbjct: 1052 NVEENIEENIEE 1063
Score = 31.3 bits (70), Expect = 0.58
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE E++ E IE + ++E EE EE EE ++ EE EE EE EE E
Sbjct: 1046 EENAEENVEENIEENIE-EYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVE 1104
Query: 63 EEEEEEEEEEEKEVARRW 80
E EE EE +E A +
Sbjct: 1105 ENAEENAEENAEENAEEY 1122
Score = 30.9 bits (69), Expect = 0.69
Identities = 27/71 (38%), Positives = 35/71 (49%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E E + + +E +EE EE EE EE +E +E EE EE
Sbjct: 1008 EENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEE 1067
Query: 63 EEEEEEEEEEE 73
EE EE EE
Sbjct: 1068 NVEEIEENIEE 1078
Score = 30.5 bits (68), Expect = 0.85
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E++E++ E +E + + +E EE EE E+ EE EE EE ++E EE
Sbjct: 1070 EEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEE 1129
Query: 64 EEEEEEE 70
EE +E
Sbjct: 1130 HNEEYDE 1136
Score = 30.5 bits (68), Expect = 0.88
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E +E + + EE EE EE ++ EE +EE EE EE E
Sbjct: 976 EENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVE 1035
Query: 63 EEEEEEEEEEEKEV 76
E +EE EE E+
Sbjct: 1036 EYDEENVEEIEENA 1049
Score = 30.5 bits (68), Expect = 1.00
Identities = 27/73 (36%), Positives = 34/73 (46%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE+D E +E + + EE EE EE ++ EE EE EE E+
Sbjct: 952 EENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENV 1011
Query: 63 EEEEEEEEEEEKE 75
EE EE EE E
Sbjct: 1012 EENIEENVEEYDE 1024
Score = 30.1 bits (67), Expect = 1.1
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE--EEKEEEKEEEEEEK 60
EE VE+ E E + +E EE EE EE EE EE +EE EE EE
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEEN 1075
Query: 61 EEEEEEEEEEEEEKE 75
EE EE EE +E
Sbjct: 1076 IEENIEENVEENVEE 1090
Score = 30.1 bits (67), Expect = 1.2
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE VE++ E +E + +E EE +EE E+ EE +E +E EE EE
Sbjct: 1004 EENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEE 1063
Query: 63 EEEEEEEEEEE 73
+EE EE EE
Sbjct: 1064 YDEENVEEIEE 1074
Score = 29.8 bits (66), Expect = 1.5
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ ++E EE EE EE ++ EE EE EE E+ ++E EE EE E
Sbjct: 1086 ENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
Score = 29.8 bits (66), Expect = 1.7
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKE--EEEKEEEKEEEEE 58
+EE E D+ +E + + + E+ EE EE EE +E EE EE EE EE
Sbjct: 1015 IEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEE 1074
Query: 59 EKEEEEEEEEEEEEEKEV 76
EE EE EE E+ V
Sbjct: 1075 NIEENIEENVEENVEENV 1092
Score = 29.4 bits (65), Expect = 2.4
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEE--EEEK 60
EE +E++ E +E + ++E EE EE EE +E EE EE EE EE
Sbjct: 1054 EENIEENIEEYDEENVEE--IEENIEENIEENVEENVEENVEEIEENVEENVEENAEENA 1111
Query: 61 EEEEEEEEEEEEEKEV 76
EE EE EE +++
Sbjct: 1112 EENAEENAEEYDDENP 1127
Score = 29.4 bits (65), Expect = 2.5
Identities = 27/75 (36%), Positives = 35/75 (46%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E+ ++ E IE + EE EE +EE ++ EE EE EE EE
Sbjct: 1029 EVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENV 1088
Query: 62 EEEEEEEEEEEEKEV 76
EE EE EE E+ V
Sbjct: 1089 EENVEEIEENVEENV 1103
Score = 29.0 bits (64), Expect = 2.6
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE--EEKEEEKEEEEEE 59
+EE VE+ + +E E ++ E+ EE EE EE EE EE EE EE EE
Sbjct: 1023 DEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEE 1082
Query: 60 KEEEEEEEEEEEEEKEV 76
EE EE EE E+ V
Sbjct: 1083 NVEENVEENVEEIEENV 1099
Score = 29.0 bits (64), Expect = 2.7
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E + ++ LD E+E E+ EEE + E+E +E EE ++ E++ ++E
Sbjct: 419 LEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDE 474
Score = 28.6 bits (63), Expect = 3.5
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D +E EE+ EE E+ EE EE EE EE EE EE EE +E
Sbjct: 950 DAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEE 997
Score = 27.8 bits (61), Expect = 6.6
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ EE EE+ E+ EE EE EE EE EE EE EE +E
Sbjct: 949 EDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEE 993
Score = 27.4 bits (60), Expect = 8.2
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E++ EE EE+ EE EE +E +E EE EE EE EE E+ V
Sbjct: 948 EEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENV 995
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 33.4 bits (76), Expect = 0.099
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ + ++ E++ ++E + + E E E+ +E E +EEK+ EEEE
Sbjct: 111 SEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAG 170
Query: 62 EEEEEEEEEEEEK 74
EE+E E+ EK
Sbjct: 171 EEKESVEQATREK 183
Score = 33.4 bits (76), Expect = 0.099
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
D++EEEEE+E E+E ++E++ + E E E+ ++E E++EEK+
Sbjct: 115 ADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKK 163
Score = 31.5 bits (71), Expect = 0.47
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + + E+E E DE E + E E + +++ E+ EE++ E+
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Query: 61 EEEEEEEEEEEEEKE 75
EE EE+E E+
Sbjct: 167 EEAGEEKESVEQATR 181
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ + + E E +EE+EE++E+E+++ EEE E ++ + ++ E
Sbjct: 270 GDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEG 329
Query: 66 EEEEEEEEK 74
+ E +E
Sbjct: 330 VDLESPKEL 338
Score = 30.0 bits (67), Expect = 1.4
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE+ E + ++ E L E E+ ++E E+ +E++ +EEE EE+E E
Sbjct: 118 EEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVE 177
Query: 62 EEEEEEEEEEE 72
+ E++ ++
Sbjct: 178 QATREKKFDKS 188
Score = 29.6 bits (66), Expect = 1.8
Identities = 17/70 (24%), Positives = 40/70 (57%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
++L+++ ++E+E + + E ++ +E E+++E++ EEEE EE++ V + +
Sbjct: 124 DESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Query: 84 KNRPAMNYDK 93
K + DK
Sbjct: 184 KFDKSGVDDK 193
Score = 29.6 bits (66), Expect = 1.9
Identities = 15/74 (20%), Positives = 42/74 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE +E + + + + + + +++E ++E ++E + E+E+E+++E+E+ +
Sbjct: 248 EEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQ 307
Query: 62 EEEEEEEEEEEEKE 75
+EEE E ++ +
Sbjct: 308 DEEEPPEAAMDKVK 321
Score = 28.8 bits (64), Expect = 2.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
L L + E E+ + + E+ +EE+EEE+E E+E ++E+E +
Sbjct: 91 LAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNE 143
Score = 28.8 bits (64), Expect = 3.3
Identities = 18/74 (24%), Positives = 45/74 (60%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ +D+ ++E IE F ++ ++++ ++ E E E +++ +KE + + +E
Sbjct: 236 EDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEE 295
Query: 62 EEEEEEEEEEEEKE 75
E+EE++E+E+++ E
Sbjct: 296 EDEEDDEQEDDQDE 309
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 33.5 bits (77), Expect = 0.10
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEE-EKEEEKEEEEEE 59
+ E +E+ K E L ++ L+E +E EEE EE EK +E E +
Sbjct: 487 LPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKT 546
Query: 60 KEEEEEEEEEEEEEKE 75
E + +
Sbjct: 547 SLLELKAQIVVLAHMG 562
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 32.8 bits (75), Expect = 0.10
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
Q E EE+ + E E E + KE+ + EK+ ++ + + + + K +
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
Score = 32.8 bits (75), Expect = 0.11
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ L +FL E EE + E E EE+ K + E E + +E+ + E+K
Sbjct: 36 LVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 30.9 bits (70), Expect = 0.46
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 20 LRIFLQTLDEKEEE-EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L +FL D E K E EE + E E EE+ + E E E
Sbjct: 22 LFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPE 78
Score = 30.9 bits (70), Expect = 0.49
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E EE + E + EE+ + E E + + +E+ + EK+ + K +P
Sbjct: 49 LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKK----PKPKPK 102
Score = 28.2 bits (63), Expect = 3.7
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+E + E E EE+ K E E E + +E+ + E++ ++ K
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Score = 27.8 bits (62), Expect = 4.3
Identities = 10/65 (15%), Positives = 27/65 (41%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ ++ +E + E E EE+ + E E E + +++ + E++ ++ +
Sbjct: 39 LAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Query: 73 EKEVA 77
K
Sbjct: 99 PKPKP 103
Score = 27.1 bits (60), Expect = 7.9
Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E ++ E E E Q E E E + KE+ + E++ ++ + +
Sbjct: 47 KVLEAPTEEPQPEPEPPEE-----QPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKP 101
Query: 61 EEEEEEEEEEEEEKEVA 77
+ + + + + + + +
Sbjct: 102 KPKPKPKPKVKPQPKPK 118
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 33.5 bits (77), Expect = 0.10
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEE------EEEEEEEEEEKKEEEEKEEEKEE 55
E E+VE+ R ++ +E ++ L+E+ E E E EE+++ EE E E
Sbjct: 490 EVEEVEERLERAED-LVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
Query: 56 EEEEKEEEEEEEEEEEEEKEVARR 79
E E EE+ E E EEE E AR
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEARE 572
Score = 32.3 bits (74), Expect = 0.21
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ + E+ E EE+ E E+ E E E E EE+ + E EEE EE +EVA
Sbjct: 523 ELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVA 575
Score = 30.0 bits (68), Expect = 1.2
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE--EEKEEEKEEEEEE 59
E E+ E+ + + +E E L+ +E+ EE E E E E E E E E+EE EE
Sbjct: 221 EIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEE 280
Query: 60 KEEEEEEEEEEEEEKEVAR 78
+ E EE EEE++
Sbjct: 281 VRDLRERLEELEEERDDLL 299
Score = 29.6 bits (67), Expect = 2.0
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 20/96 (20%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEE--------------------EEEEEEK 43
E++ +++ +ER EL L+T E+ EE E E EE++
Sbjct: 415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDR 474
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ EE E E E+ EEE EE EE E E+ E R
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR 510
Score = 28.1 bits (63), Expect = 4.9
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 30 KEEEEEEEEEEEEKKEE-EEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
++E +E EE EE++EE E E E E+ E E E E EE EE R
Sbjct: 236 RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRE 286
Score = 27.7 bits (62), Expect = 6.5
Identities = 31/81 (38%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEE-----EEEEEEKKEE-EEKEEEKEEEE 57
E++E ++R E R+ Q +E+ E E EE EE +EE E E E EE
Sbjct: 317 EELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376
Query: 58 EEKEEEEEEEEEEEEEKEVAR 78
E E+ EE EE EEE E R
Sbjct: 377 EAVEDRREEIEELEEEIEELR 397
Score = 27.7 bits (62), Expect = 6.9
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ER E R + L+ + +E EE E+K+ EE E+ EE+ +E EE ++
Sbjct: 625 RRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDD 678
Score = 27.7 bits (62), Expect = 7.4
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
T++E E EE E E E EEE +E E+ E E E E+ E EE+
Sbjct: 469 TIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEER 517
Score = 27.3 bits (61), Expect = 9.5
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E E R + L E+ E E E EE+ + E +EE +E EE E + E +E
Sbjct: 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588
Query: 74 KEVAR 78
+ + R
Sbjct: 589 ESLER 593
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 33.0 bits (75), Expect = 0.10
Identities = 18/84 (21%), Positives = 40/84 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+E ++++DK E + + + L+ EE E+ EE E+ +++ +++ E+E E
Sbjct: 128 KEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENE 187
Query: 62 EEEEEEEEEEEEKEVARRWGVQKN 85
+ +E E+ E K +
Sbjct: 188 DSKEPVEKAERTKAETDDVTEEDY 211
Score = 31.8 bits (72), Expect = 0.24
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
KE+ + E+ K+EE+ ++ + +E+K E+ ++ +E E +
Sbjct: 106 KEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKV 155
Score = 31.8 bits (72), Expect = 0.27
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E + ++ E+E E+ +E +K E K E + EE+ +EE+ E+ + K
Sbjct: 166 EETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIK 225
Query: 75 E 75
E
Sbjct: 226 E 226
Score = 29.1 bits (65), Expect = 1.8
Identities = 14/66 (21%), Positives = 35/66 (53%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+++ +E+ +++ +I + +E +E + +E++ E+ ++ +E E K EE E+
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETED 161
Query: 68 EEEEEE 73
EE
Sbjct: 162 SYHVEE 167
Score = 28.7 bits (64), Expect = 2.2
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE ++ K ++K E++ LQ+L EK ++EE+ K+ + ++++ E+ +
Sbjct: 88 EEGQLAVRKTKQKVEE-EVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDR 146
Query: 62 EEEEEEEEEEEEKE 75
+E E + EE E
Sbjct: 147 QETLEAGKVHEETE 160
Score = 28.0 bits (62), Expect = 4.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E E+ E + E + EE+ +EE E+ K +EE +E EE++
Sbjct: 191 EPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQEV 239
Score = 27.6 bits (61), Expect = 6.1
Identities = 15/75 (20%), Positives = 34/75 (45%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E+ + +E Q K +++ EEE +E+ + EK ++EE+
Sbjct: 67 LKEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGP 126
Query: 61 EEEEEEEEEEEEEKE 75
+E + +E++ E
Sbjct: 127 GKEPQLDEDKFLLAE 141
Score = 27.2 bits (60), Expect = 8.6
Identities = 16/75 (21%), Positives = 36/75 (48%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ K E+D ++ + E + L + +E E + E+ E+ EE E+ ++
Sbjct: 116 IVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQ 175
Query: 61 EEEEEEEEEEEEEKE 75
+ +E+ E+E E+ +
Sbjct: 176 DMKEKASEQENEDSK 190
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 33.0 bits (76), Expect = 0.11
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EK EEE +E E E+E+ E+E+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERL 37
Score = 32.2 bits (74), Expect = 0.19
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E+ EEE +E E ++E+ EEE+EE+E+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.2 bits (74), Expect = 0.20
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
E+ EEE EE + E+E+ EEE EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 31.8 bits (73), Expect = 0.24
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E+ EEE EE E EKE+ EEE+EEEE+E R
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 31.5 bits (72), Expect = 0.40
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSL 98
EK EEE E+ E E+E+ EEE+E+E W +++L + L
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGW----------FERLKQGL 41
Score = 31.1 bits (71), Expect = 0.45
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E+ ++E EE E EKE+ EEE EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 31.1 bits (71), Expect = 0.48
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E+ EEE ++ E EKE+ +EE+EEE++E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 31.1 bits (71), Expect = 0.51
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++ EEE EE E E+EK EEE++EEEKE E
Sbjct: 4 FEKLEEELEELEAEKEKIEEEDEEEEKEGWFERL 37
Score = 29.9 bits (68), Expect = 1.1
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E+ EEE E+ E E+++ E+E+EEEEKE E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.9 bits (68), Expect = 1.3
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ EE+ EE E E+E+ EEE+EEEE+E +
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
F + L+E+ EE E E+E+ E+++EEE++E E
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 33.5 bits (77), Expect = 0.11
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
EK ++E+++ ++ + + +EK + ++E + EE+ +E ++ R VQ R
Sbjct: 662 TEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRR 720
Score = 32.3 bits (74), Expect = 0.24
Identities = 14/72 (19%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE-----EEKEEEKEEEEEEKEE 62
+++ + +++ E R Q ++ ++E+++ ++E +EK + ++E + E
Sbjct: 641 RNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVE 700
Query: 63 EEEEEEEEEEEK 74
E+ +E E+EE+
Sbjct: 701 EQSVQETEQEER 712
Score = 30.4 bits (69), Expect = 1.0
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ + E E ++E + +E E E E E + E +
Sbjct: 941 EVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVET 993
Score = 30.0 bits (68), Expect = 1.2
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEK------------EEEKEEEEEEKEEEEEEEEEEEE 72
Q E E ++ E E+ + ++E++ +E+++ ++E K EE+ +E
Sbjct: 648 QQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQET 707
Query: 73 EKE 75
E+E
Sbjct: 708 EQE 710
Score = 29.6 bits (67), Expect = 2.0
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E ++E + EE E E E E + E E E
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
Score = 27.3 bits (61), Expect = 9.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 55 EEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
EE + +E+ + E + E++ RR Q NR
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNR 614
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 32.8 bits (75), Expect = 0.12
Identities = 18/52 (34%), Positives = 33/52 (63%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
L+ L +E++EEEEEEEE++ + E EE+ + ++E+ E++EE+
Sbjct: 172 MLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDN 223
Score = 30.5 bits (69), Expect = 0.66
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEE--------KEEEEEEKEEEEEEEEEEEEEKEVARR 79
E ++ +EE+E++ E+E+EEE E + + E E E EE KE+ R
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSR 163
Score = 30.1 bits (68), Expect = 0.90
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 1 MEEEKVEKDKGREKERAIELRIFL---QTLDEKEEEEEEEEEEEEKKEEEEKEE------ 51
++EE+ E+ + +E + +T D K E E E EE K+ + + +
Sbjct: 113 LDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNSM 172
Query: 52 -EKEEEEEEKEEEEEEEEEEEEEKEVA 77
E E+KEEEEEEEE+E K ++
Sbjct: 173 LEALFRREKKEEEEEEEEDEALIKSLS 199
Score = 29.7 bits (67), Expect = 1.3
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E++EEEEEEEE + + E EE++ ++E+ E++EE
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDN 223
Score = 28.2 bits (63), Expect = 3.7
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L + ++EEEEEEE+E K E E++ + E+ E++EE+ +
Sbjct: 173 LEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPS 228
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 33.4 bits (77), Expect = 0.12
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+E++ EE+E+ EE +KEEE+EEEE + + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 31.5 bits (72), Expect = 0.42
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
K +E++ EEKE+ EE ++EEEEEEEE +
Sbjct: 323 LSKRKEQQAEEKEKPAEEAKKEEEEEEEESVD 354
Score = 31.5 bits (72), Expect = 0.45
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++++ EEKE+ EE ++E+EEEEEE ++ +
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
Score = 31.5 bits (72), Expect = 0.47
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
K +E++ EE+E+ +E +++EEE+EEE + + E E +
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELGYGLIPL 373
Score = 31.1 bits (71), Expect = 0.51
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E++ EE+E+ EE KKEEEE+EEE ++ + E E
Sbjct: 328 EQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 31.1 bits (71), Expect = 0.58
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
++++ EE+E+ EE K+EEE+EEE+ ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 28.8 bits (65), Expect = 2.9
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
+E++ EE+++ +E ++EE+EEEEE ++ + G
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELG 367
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 33.2 bits (76), Expect = 0.12
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E +E E E E E E EE E EE E+ EEE + +
Sbjct: 202 EPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 32.8 bits (75), Expect = 0.16
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E +E E E + E E EE E EE E+ EE+
Sbjct: 200 PPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEEN 246
Score = 32.4 bits (74), Expect = 0.20
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ +E E E + + + EE + EE E+ EEE
Sbjct: 197 PPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENN 247
Score = 31.6 bits (72), Expect = 0.32
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
T+DE E E E + E EE E EE E+ EEE + + V
Sbjct: 204 TVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPV 254
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 32.4 bits (74), Expect = 0.13
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
D K++EE EE +E K+ ++ E K+++
Sbjct: 161 DAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 31.2 bits (71), Expect = 0.36
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E+K+ ++KEE EE +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 30.8 bits (70), Expect = 0.50
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E ++ K++EE EE++E ++ ++ E +K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKK 194
Score = 30.4 bits (69), Expect = 0.53
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E ++ ++KEE EE KE ++ ++ E ++K+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.3 bits (66), Expect = 1.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
K+ +++EE EE+KE +K ++ E
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.5 bits (64), Expect = 2.8
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E ++ +++E+ EE++E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.1 bits (63), Expect = 3.1
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ K++E+ EE KE ++ ++V
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVE 191
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 33.0 bits (75), Expect = 0.14
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+++ +E+ ++E K E E E E ++ EE+ +
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 28.8 bits (64), Expect = 3.2
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
R + + T+ K +++ +E+ ++E + E E E E ++ EE+
Sbjct: 780 RKVNTAVLSTTI--KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDA 837
Score = 27.6 bits (61), Expect = 7.4
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
Q EK ++E + E E E E ++ EEK +
Sbjct: 795 ARAKQKPKEKGPNDKEIKIESPSV-ETEGERCTIKQREEKGIDAP 838
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 33.1 bits (75), Expect = 0.14
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ E E E E + + E++K EE++ E +++ + EKE
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 30.8 bits (69), Expect = 0.64
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+E E E E E + ++++++ EE++ E +++ + E++ +A
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIA 141
Score = 29.6 bits (66), Expect = 1.6
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ L E E E E + + K E+++ EE++ E +++ + E+E
Sbjct: 93 EFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 28.4 bits (63), Expect = 4.0
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
FL + + E + + ++EK++ E+++ E +++ + E+E
Sbjct: 94 FLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 28.4 bits (63), Expect = 4.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
R+ ++T D + EE + E E E + ++EK++ EE++ E
Sbjct: 75 RLPIKTKDNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEI 127
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 32.8 bits (76), Expect = 0.14
Identities = 8/49 (16%), Positives = 9/49 (18%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE E E E E E A +
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 32.8 bits (76), Expect = 0.15
Identities = 8/50 (16%), Positives = 9/50 (18%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EEE E E + E E A
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 30.5 bits (70), Expect = 0.83
Identities = 12/54 (22%), Positives = 12/54 (22%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
EEE E E E E E A K PA
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPA 130
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 31.4 bits (71), Expect = 0.15
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
F Q++ E E EE+E+ +K E K+E + E + +E++ + + E
Sbjct: 46 FKQSMQE--ESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATV 98
Score = 28.3 bits (63), Expect = 1.8
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGV 82
F + D+ ++ +EE E+KE+ EK E ++E E E + EE++ + + V
Sbjct: 39 FKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATV 98
Query: 83 QKNR 86
Sbjct: 99 ASKA 102
Score = 27.9 bits (62), Expect = 1.9
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+T +EKE+ E+ E ++E + E K EE + + + E +
Sbjct: 55 RTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDG 105
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 30.4 bits (69), Expect = 0.15
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
L L K++E + EEE+ E++EE K EE++E E+ K EE E E
Sbjct: 19 LAKLKAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 26.9 bits (60), Expect = 2.2
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
K +++E + EEE+++EEEE + +E +E EK + EE E E
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.0 bits (73), Expect = 0.15
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K+++E+ EEE++ + +++K EE E + + EE + +E
Sbjct: 70 KKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 32.0 bits (73), Expect = 0.17
Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+K K ++KE+ E +EK+ E ++++ EE + + + EE + +E
Sbjct: 64 TTKKSKKKDKEKLTE--------EEKKPESDDDKTEENENDPDNNEESGDSQESASANSL 115
Query: 65 EEEEEEEE 72
+ + E++
Sbjct: 116 SDIDNEDD 123
Score = 31.3 bits (71), Expect = 0.36
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
KE+ +EE+K E +++K EE E + + EE
Sbjct: 73 KEKLTEEEKKPESDDDKTEENENDPDNNEES 103
Score = 28.2 bits (63), Expect = 3.2
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
D+++ EEE++ E + + EE E + + EE + +E +
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSD 117
Score = 28.2 bits (63), Expect = 3.5
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++EK EEEK+ E ++++ E+ E + + EE + +
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Score = 27.8 bits (62), Expect = 3.9
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
++E+ ++E++ + ++ + EE E + + EE + +E A
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASAN 113
Score = 27.8 bits (62), Expect = 3.9
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++ +K+++++ EEEK+ E ++++ EE E +
Sbjct: 64 TTKKSKKKDKEKLTEEEKKPESDDDKTEENENDP 97
Score = 27.4 bits (61), Expect = 5.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
KK++E+ EE+++ E + ++ EE E + + +E
Sbjct: 70 KKDKEKLTEEEKKPESDDDKTEENENDPDNNEES 103
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 31.1 bits (71), Expect = 0.16
Identities = 6/40 (15%), Positives = 26/40 (65%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E+ +K E+EE E++ ++++ ++++++ + +++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDD 86
Score = 30.7 bits (70), Expect = 0.19
Identities = 7/43 (16%), Positives = 26/43 (60%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EE E + + + E+ +++E+E++E++ ++++++ +
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDD 76
Score = 30.0 bits (68), Expect = 0.39
Identities = 7/43 (16%), Positives = 28/43 (65%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ E+ KK+E+E++E+ +++ +++++++ + ++ +V
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 29.2 bits (66), Expect = 0.63
Identities = 4/41 (9%), Positives = 27/41 (65%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ E+ ++++ EE+E + ++++++ ++++ + ++++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 29.2 bits (66), Expect = 0.65
Identities = 8/44 (18%), Positives = 25/44 (56%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EE E + + ++ K++E+EE E++ +++++++ +
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDD 77
Score = 29.2 bits (66), Expect = 0.77
Identities = 4/43 (9%), Positives = 27/43 (62%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E+ +++E +E+E+ ++++++ +++ + ++++ +
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 28.8 bits (65), Expect = 0.95
Identities = 3/44 (6%), Positives = 30/44 (68%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ E+ ++ ++EE++++ +++++ +++++ + ++++ ++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL 90
Score = 28.4 bits (64), Expect = 1.3
Identities = 4/43 (9%), Positives = 28/43 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+ E+ +++E+E+ E++ ++ ++++++ + + ++++ +
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 27.7 bits (62), Expect = 2.5
Identities = 4/44 (9%), Positives = 32/44 (72%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
++ +++E+EE+E++ +++ +++ +++ + ++++ + ++++
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94
Score = 27.7 bits (62), Expect = 2.7
Identities = 4/44 (9%), Positives = 29/44 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+ +++E+EE +++ +++ ++++++ + ++++ + ++
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDD 92
Score = 27.3 bits (61), Expect = 3.2
Identities = 5/50 (10%), Positives = 31/50 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E +++E+EE+E+ ++ +++ ++++ ++++ + +++++ +
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/46 (17%), Positives = 26/46 (56%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EE E + + E +K+E+EE++++ ++++++++ +
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDD 79
Score = 26.5 bits (59), Expect = 5.4
Identities = 4/49 (8%), Positives = 32/49 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ E+ +++E+EE++ + +++ ++++++ + ++++ + +++ +
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDF 97
Score = 26.1 bits (58), Expect = 9.1
Identities = 4/48 (8%), Positives = 33/48 (68%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+++EE+E++ ++ ++++ ++ + ++++ + ++++++ E++ +
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 32.3 bits (74), Expect = 0.16
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E ++ K EE E+ E +EEE E E++E K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESK 193
Score = 31.9 bits (73), Expect = 0.17
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
D K EE EE E +E+E + E++E K
Sbjct: 161 DAKLLEEFAAEEAEAAAAAKEEESAEGEKKESK 193
Score = 31.5 bits (72), Expect = 0.23
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E K+ + EE EE E +EEE E E+KE
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKE 191
Score = 31.5 bits (72), Expect = 0.27
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E ++ K EE EE E KEEE E E++E +K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKK 194
Score = 30.4 bits (69), Expect = 0.56
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E ++ + EE EE E +EEE + E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.0 bits (68), Expect = 0.83
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E ++ + +E +E E +E+E E E++E +++K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.0 bits (68), Expect = 0.84
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
E ++ + EE +E E KEEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.0 bits (68), Expect = 0.87
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E ++ + EE EE + ++EE E E++E ++K+
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E ++ + E+ EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE EE E +EEE E +++E ++K+
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
K+ + EE EE + +EE+ E E+KE
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 27.3 bits (61), Expect = 5.4
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE 55
E + A L F +E E +EEE E E+KE +K++
Sbjct: 158 EWKDAKLLEEF----AAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 27.3 bits (61), Expect = 5.8
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ K E+ EE + +EEE E ++
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKE 191
Score = 27.3 bits (61), Expect = 6.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E ++ + EE EE + +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 26.9 bits (60), Expect = 7.8
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 29 EKEEEEEEEE--EEEEKKEEEEKEEEKEEEE 57
E ++ + EE EE + KEEE E E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45;
Provisional.
Length = 193
Score = 32.0 bits (72), Expect = 0.16
Identities = 20/48 (41%), Positives = 34/48 (70%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
L E+E+ ++E EE E+K E+ EE +++ EE E+EEE EE++ +E+
Sbjct: 21 LAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 32.6 bits (74), Expect = 0.17
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 7/42 (16%)
Query: 37 EEEEEEKKEEEEK-------EEEKEEEEEEKEEEEEEEEEEE 71
EE+E K+E +E+ +EE EE +E++EEEE EEEEE
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
Score = 31.1 bits (70), Expect = 0.54
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 8/42 (19%)
Query: 41 EEKKEEEEKEEEK--------EEEEEEKEEEEEEEEEEEEEK 74
E+KE +++ +E+ EE EE +E++EEEE EEEE+
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 32.7 bits (75), Expect = 0.17
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E R +L + + +E E EE++E ++K EK E+E++ EE E+ EE
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEE 343
Score = 31.9 bits (73), Expect = 0.31
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEE--EEKKEEEEKEEEKEEEEEE 59
+++ + + E+ER ++ + F + + EKE+ EE E+ EE+KE K EE +++ E+
Sbjct: 302 SLKEIHEARLNEEERELK-KKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLED 360
Query: 60 KEEEEEEE 67
E+ E+
Sbjct: 361 LEKRLEKL 368
Score = 30.8 bits (70), Expect = 0.60
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
K E +E E + EE+ E K++ E+ E+E+ EE E+
Sbjct: 295 LKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQN 339
Score = 29.6 bits (67), Expect = 1.4
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EEE E +++ EK E+EK E+ E+ +E +E + EE +K++
Sbjct: 312 NEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKL 358
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal.
This domain is found to the N-terminus of bacterial
signal peptidases of the S49 family (pfam01343).
Length = 154
Score = 31.7 bits (73), Expect = 0.17
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
++K + EL I L+E+ ++ +E E ++E K EK E++ EK + + E+++
Sbjct: 32 AQKKKGKKGELEI--TDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKK 89
Query: 70 EEEEKEVAR 78
++E+ R
Sbjct: 90 AKKEEPKPR 98
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 32.7 bits (75), Expect = 0.18
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 26 TLDE--KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
TL E E E + EE ++E K+ EEK E+ E E E+KEEE E+ + + +K
Sbjct: 85 TLGEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Score = 28.8 bits (65), Expect = 3.4
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
EE E E + EE K+E +K EEK E+ E + E++EEE E+ + K + + W
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAW 137
Score = 27.7 bits (62), Expect = 7.1
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
EK+K ++K + + +D ++E++ E+ E+E K+ E E + EKE +E E
Sbjct: 390 EKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELE 449
Query: 67 EE 68
++
Sbjct: 450 KQ 451
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway
components [Intracellular trafficking and secretion].
Length = 94
Score = 30.4 bits (69), Expect = 0.21
Identities = 11/56 (19%), Positives = 32/56 (57%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+R F + + + E +EE + EE +++++ + + +E+ ++ E +E+ +K+
Sbjct: 36 IREFKKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELKEDLKKK 91
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 32.4 bits (74), Expect = 0.21
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAM 89
EE+EEE +E++ E EE EEE E EE +++E +E + R +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKD 181
Score = 30.4 bits (69), Expect = 0.85
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EE+EEE +++ E E+ EEE E EE +++E +E +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 29.7 bits (67), Expect = 1.6
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EE+EEE ++ + E EE EEE E +E +++E +E + K
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKR 170
Score = 28.5 bits (64), Expect = 3.6
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDK 93
E+ EEE +E+ E E+ EEE E EE ++++ + + K
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAK 180
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 32.3 bits (74), Expect = 0.24
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E EE++KE++ K+E KEE + + EE E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 31.1 bits (71), Expect = 0.47
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEE-EEEEEEEKEVARRWGVQKNR 86
KE EEKE+EK+ ++E KEE + + EE E+ + KNR
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAEII----IGKNR 430
Score = 29.6 bits (67), Expect = 1.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E EE+E+EKK ++E +EE+ + K EE E
Sbjct: 392 EREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 32.4 bits (74), Expect = 0.24
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+E++ EE+ EE + EK +E E++ E+ ++EKE
Sbjct: 321 DEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEP 365
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.9 bits (73), Expect = 0.25
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEE----------------EKEEEEEEKEEE 63
++ ++ L+E EEE EE EEE K+ E EKE +K ++EE EE
Sbjct: 56 DKLAMKPLEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEE 115
Query: 64 EEEEEEEEEEKEVARR 79
E E EE E + R
Sbjct: 116 LLELEAEEPEPPLRPR 131
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 32.0 bits (73), Expect = 0.26
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+++++E++ E KK+ E+K+++K+E++E K E E + + +K
Sbjct: 50 ATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 30.5 bits (69), Expect = 0.93
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EEE + +K ++E+K E +++ E+K+++++E++E + E E
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/43 (25%), Positives = 29/43 (67%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EEE + +++K+E+K E ++K E+++++++E++E +
Sbjct: 42 FSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
E+K E +K+ EK+++++++++E + E E + + ++ K +P
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 29.3 bits (66), Expect = 2.0
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
KE EEE + K+++KE++ E +++ E+++++++EK+
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKK 81
Score = 28.5 bits (64), Expect = 3.0
Identities = 8/51 (15%), Positives = 32/51 (62%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + EEE + K+++++++ E +++ ++++++++E++E + E
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 28.1 bits (63), Expect = 4.2
Identities = 9/46 (19%), Positives = 31/46 (67%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+K+E++ E +++ +K++++K+E+KE + E + + + ++ ++
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKT 102
Score = 27.4 bits (61), Expect = 7.3
Identities = 11/47 (23%), Positives = 30/47 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+EE + ++ K+E++ E K++ E++K++++E++E + E +
Sbjct: 43 SEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGET 89
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 32.0 bits (72), Expect = 0.26
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E ER +L L E EE EEE+ + E + E EEE EEEE E + E + E
Sbjct: 67 ETERPRDLTAAL--FAEAGEEAEEEDNDRECPDTEA-EEEDEEEEIEAPDPEVNPLDAEG 123
Query: 73 EKEVARRWGVQKNRPAMNYDKLSRSLRYY 101
+AR D L ++L +
Sbjct: 124 LSGLARE----------ACDALKKALLRH 142
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 31.9 bits (73), Expect = 0.27
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR---------RWG 81
+ E+E E+ + + E + E E EEE KE+A R G
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKELAEETLEAWEKVRSG 280
Query: 82 VQK 84
V+K
Sbjct: 281 VKK 283
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to
be DNA-binding and may be a transcription factor.
Length = 238
Score = 31.6 bits (72), Expect = 0.27
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E+E++EE E EEEE++EE + + + E++E + ++EEE E+E + +E ++ K +
Sbjct: 36 EEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAY 95
Query: 89 M 89
Sbjct: 96 K 96
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.9 bits (73), Expect = 0.29
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+EK++ K + K + +F D K + + + E + EK + E KE++KE+++EEK++
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Query: 63 EEEEEEEEEEEK 74
++ E EE EK
Sbjct: 343 KQIERLEERIEK 354
Score = 31.2 bits (71), Expect = 0.51
Identities = 15/71 (21%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
K + L+ + L E + + + + + +++ E+ + E +E+++EK++EE+++++ E
Sbjct: 290 KYQLKRLKKMIL-LFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERL 348
Query: 74 KEVARRWGVQK 84
+E + VQ
Sbjct: 349 EERIEKLEVQA 359
Score = 27.3 bits (61), Expect = 9.1
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+ +EK + + K L+ + E + + + + K E + E+ E +E+K
Sbjct: 274 THEKSMEKLQEKIKALK-YQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK 332
Query: 61 EEEEEEEEEEEEEKEVAR 78
+E+++EE+++ K++ R
Sbjct: 333 KEKKKEEKKK---KQIER 347
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 31.6 bits (72), Expect = 0.31
Identities = 20/74 (27%), Positives = 29/74 (39%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
E + IE + + E+ EEEE ++ E KEEE E +E +E
Sbjct: 5 INEDRDDALPFQVIEFKDLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGI 64
Query: 65 EEEEEEEEEKEVAR 78
EE E E+
Sbjct: 65 EEGAREGYEEGFQL 78
Score = 28.1 bits (63), Expect = 3.4
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
KV +K +E +E + +E E +E +E E+ E EE + EE E
Sbjct: 27 GPKVAPEKAVLEEEELEQAL-EAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFE 85
Query: 63 EEEEEEEEEEE 73
E +EE E
Sbjct: 86 EGQEEGRVLER 96
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 31.3 bits (71), Expect = 0.31
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
EKEE E EE EE E+ ++K + E K + E E+
Sbjct: 73 EKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 30.9 bits (70), Expect = 0.34
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+K+++E+EE E +E + EE +E +++ E + + E
Sbjct: 68 KKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDV 117
Score = 30.2 bits (68), Expect = 0.65
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
KK +++K+E++E E EE + EE EE +K+V
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKV 98
Score = 30.2 bits (68), Expect = 0.75
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++KK+E+E+ E EE EE EE +++ + +
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYEL 102
Score = 30.2 bits (68), Expect = 0.78
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+KE+EE E EE + EE EE ++ + E + + E E
Sbjct: 68 KKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHE 115
Score = 29.8 bits (67), Expect = 0.98
Identities = 12/52 (23%), Positives = 28/52 (53%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+T +K+E+EE E E+ + E+ EE +++ + + + + E ++V
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDV 117
Score = 29.8 bits (67), Expect = 1.1
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYD 92
K ++++KE+E+ E +E + EE EE ++K VQ +N++
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHE 115
Score = 29.0 bits (65), Expect = 1.6
Identities = 12/57 (21%), Positives = 28/57 (49%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKL 94
++++K++EE E EE + +E EE +++ + E +V + ++ L
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDL 123
Score = 28.6 bits (64), Expect = 2.6
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
K+ ++ +++++EK+E E E+ + EE EE +++ + E + +
Sbjct: 61 KKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNT 108
Score = 27.9 bits (62), Expect = 4.1
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+++++E+E+ E EE + EE E+ +++ + E + + A
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAA 110
Score = 27.5 bits (61), Expect = 5.9
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
K+ +++++E+EE + E+ + EE EE ++ + E + +
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTA 109
Score = 27.1 bits (60), Expect = 8.4
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+K ++ ++ + + + L +E + EE EE +KK + E + + E E+
Sbjct: 58 PRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 26.7 bits (59), Expect = 9.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
KK+ +K ++K++E+EE E EE + EE E
Sbjct: 60 KKKTTKKTKKKKKEKEEVPELAAEELSDSEENE 92
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 32.0 bits (72), Expect = 0.32
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE-----KEVARRWGVQ 83
K E+ E +K E+ ++E + E E E E ++ EE K+ R +
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSLLKKTINRIDMN 606
Query: 84 K-NRPAMNYD--KLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGLIDIRFYRS 135
K RP +N K ++L+ + + ++ Y Y+ S+ G D RF +S
Sbjct: 607 KIPRPIINTQEKKKKKNLKVFE---TCKYISPPSY-YQPYISIDTGKADPRFLKS 657
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 31.8 bits (72), Expect = 0.34
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEE----EEEEEKKEEEEKEEEKEEEE 57
E E + R K+ E + + + E+E E+E +E K E E++ E+ E+E
Sbjct: 655 MVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQE 714
Query: 58 EEKEEEEEEEEEEEEEKEVA 77
E ++ +EEE++ ++EKE+A
Sbjct: 715 ENMQKLDEEEQKIKQEKEIA 734
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 30.1 bits (69), Expect = 0.34
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EEEE +E +E EEE EE E E EEE EE
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 28.2 bits (64), Expect = 1.7
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E EE++++E +E +EE EE + E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.8 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
L+E+E++E E EEE +E E + EE+ EE +
Sbjct: 3 LEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.8 bits (63), Expect = 2.5
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E EEEE++E + EEE EE + E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.8 bits (63), Expect = 2.7
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E EEEE+ + E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.0 bits (61), Expect = 4.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
E EEEE++E E +EE E+ E + EEE E+ +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.3 bits (59), Expect = 7.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E EEEE+++ E +EE +E E E +EE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 25.9 bits (58), Expect = 9.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E EEE+ +E + E+E EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell
cycle progression and biogenesis of 60S ribosomal
subunits. The Schistosoma mansoni Mak16 has been shown
to target protein transport to the nucleolus.
Length = 97
Score = 29.8 bits (67), Expect = 0.34
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+K E EE EE +E++EEEE+EE++ E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 29.5 bits (66), Expect = 0.46
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
F + L+ +E EE +EEEEEE++EE+E E E ++EE EEE E+ E
Sbjct: 50 AFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 26.4 bits (58), Expect = 5.9
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + ++ E EE E+ +EEE+EEE+EE+E E E ++EE EEE ++
Sbjct: 46 ISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 30.6 bits (70), Expect = 0.36
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE-----EEEKEVARRWGV 82
+EKEEEEE E+EEE +EE E+ EE+ EE +++ E E E E+E A+++ +
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAI 60
Query: 83 QK 84
+K
Sbjct: 61 EK 62
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.5 bits (72), Expect = 0.36
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E +++E++ +E +++ L+ L +K + E+ E+ ++ E +E+ EE EE E
Sbjct: 335 ELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEELE 394
Query: 62 EEEEEEEEEEEEKEVARRWGVQK 84
EE +E +EE E + V K
Sbjct: 395 EELKELKEELESLYSEGKISVNK 417
Score = 27.2 bits (61), Expect = 9.2
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 20/88 (22%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE--------------------E 47
K+ G E+ + + + KEE +E EEE +E +EE
Sbjct: 311 KELGSPAGTKTEIEVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPP 370
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EK E+ E+ E KE+ EE EE EEE +
Sbjct: 371 EKREQLEKLLETKEKLSEELEELEEELK 398
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 31.6 bits (73), Expect = 0.37
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEE 68
K+E++ E EE EEE+ E EEE
Sbjct: 328 KREKKAAELAAEEAEEEEAAEPEEES 353
Score = 28.9 bits (66), Expect = 3.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEE 64
E+K E EE +EEE E EEE
Sbjct: 329 REKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.9 bits (73), Expect = 0.37
Identities = 13/58 (22%), Positives = 36/58 (62%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+L F + L+E+EE EE+E +E++ + + K + + + + +++E+++++ +K
Sbjct: 1133 DLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Score = 28.9 bits (65), Expect = 3.6
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+K++ + E +++ E + E+E++E++E++
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
Score = 28.5 bits (64), Expect = 4.0
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KK+ + E+ ++ E + E+E++E++E+++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.5 bits (64), Expect = 4.6
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K++ E++ + E ++ E+E++E +
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDD 1384
Score = 28.1 bits (63), Expect = 6.2
Identities = 7/51 (13%), Positives = 25/51 (49%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + ++ + + +K+ + E+++ E ++ E+E++E+ E
Sbjct: 1335 KKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385
Score = 27.7 bits (62), Expect = 7.7
Identities = 6/29 (20%), Positives = 20/29 (68%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
K + E++++ E + E++++E +E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 31.1 bits (71), Expect = 0.38
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLR 99
+ E + EE E E+E+ E E + E E +E+A + + +++R L
Sbjct: 56 VKSERDLEEAELEREKRELENDPEGEREELAEIY-RARGLSEELARQVARELM 107
Score = 31.1 bits (71), Expect = 0.38
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE-EEEEEKEVARRWGVQKNRPAMNYD 92
E + EE E ++E+ E E + E E EE E EE ++VAR + AM +
Sbjct: 59 ERDLEEAELEREKRELENDPEGEREELAEIYRARGLSEELARQVARELMKKDALDAMMRE 118
Query: 93 KL 94
+L
Sbjct: 119 EL 120
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
K E + +E E E E+ E E + E E EE E AR
Sbjct: 56 VKSERDLEEAELEREKRELENDPEGEREELAEIYRAR 92
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 30.3 bits (68), Expect = 0.38
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEE 62
K E +KEE+KEEEEEE+++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 1.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEE 70
+ E ++EEK+EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 51 EEKEEEEEEKEEEEEEEEEEEEE 73
+ E K+EE++EEEEEEE+
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEED 104
Score = 28.0 bits (62), Expect = 2.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEE 57
+ E KKEE+++EEE+EE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.0 bits (62), Expect = 2.3
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 57 EEEKEEEEEEEEEEEEE 73
E +KEE++EEEEEEE++
Sbjct: 89 EAKKEEKKEEEEEEEDD 105
Score = 27.2 bits (60), Expect = 3.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 46 EEEKEEEKEEEEEEKEEEEEE 66
+ E +KEE++EE+EEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
Score = 27.2 bits (60), Expect = 3.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEE 58
+ E K+EE+KEEE+EEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.4 bits (58), Expect = 6.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKE 61
K E +++E+++EEEEEE +
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.4 bits (58), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEE 71
K E ++E+++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 26.0 bits (57), Expect = 9.3
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 33 EEEEEEEEEEKKEEEEKEEE 52
+ E ++EEKKEEEE+EE+
Sbjct: 85 GAKAEAKKEEKKEEEEEEED 104
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 28 DEKEEEEEEEEEEEE 42
+KEE++EEEEEEE+
Sbjct: 90 AKKEEKKEEEEEEED 104
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 31.6 bits (71), Expect = 0.38
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
K+R I++ + E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 16 KQRQIQINLVDWF--ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 31.5 bits (71), Expect = 0.40
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EEE++ ++ + E + EE E + EE E EE +KE
Sbjct: 411 WADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKE 456
Score = 30.4 bits (68), Expect = 1.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
A E + + D +E E EE E K E+ E EE ++E
Sbjct: 411 WADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKE 456
Score = 29.2 bits (65), Expect = 1.9
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EEE++ ++ ++ ++ E E+ E+ + EE E EE ++E+
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
Score = 28.4 bits (63), Expect = 4.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+EK+ ++ ++ E E +E E+ + EE E EE ++E+
Sbjct: 416 EEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
Score = 28.1 bits (62), Expect = 5.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
F+ T + EEE++ ++ + E E EE E + EE E EE ++++
Sbjct: 405 FISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQR 458
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 31.7 bits (72), Expect = 0.40
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KE E L+ +E +E E E E +E+ EE+ +++E+ ++EEE++ +E
Sbjct: 2559 KELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQE 2618
Score = 28.3 bits (63), Expect = 5.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E+ E E +E+ +E++ +++E ++EEE+K +E E
Sbjct: 2582 ERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVS 2625
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 31.3 bits (71), Expect = 0.42
Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 29 EKEEEEEEEE---EEEEKKEEE--EKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E E E E E E +K + E E + EEE E + V R
Sbjct: 124 EAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLR 178
Score = 27.8 bits (62), Expect = 5.8
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 10/68 (14%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+ + ER I E E +K + E E EEE E
Sbjct: 122 GGEAEAELVEREIA----------FELAALVREARVKKLDALELAEADTPEEEVAEVLAR 171
Query: 66 EEEEEEEE 73
+
Sbjct: 172 SQSSVLRY 179
Score = 27.0 bits (60), Expect = 9.5
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E E E E E E + ++ + E + + EEE E + +
Sbjct: 125 AEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSV 176
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 31.3 bits (71), Expect = 0.43
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEE 52
LQ L++KEE+EE+ EE ++ EEE+ E+E
Sbjct: 49 LQLLEQKEEKEEDAGEEGDEDEEEQGEDE 77
Score = 29.8 bits (67), Expect = 1.7
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEEEE 73
E++EEKEE+ E+ +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 1.7
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEE 72
E+KEE++E+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 6.4
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEE 67
E+KEE+E++ +E +E+E+E+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.5 bits (61), Expect = 8.4
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEE 63
E++EEK+E+ +E +++EEE+ ++E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.5 bits (61), Expect = 9.1
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 51 EEKEEEEEEKEEEEEEEEEEEEEKE 75
E+KEE+EE+ EE +E+EEE+ E E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDE 77
Score = 27.1 bits (60), Expect = 9.6
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E+++E+EE+ EE +E+EEE+ E++
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHF 79
Score = 27.1 bits (60), Expect = 9.9
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEE 69
++EEKEE+ EE +E EEE+ E+E
Sbjct: 54 QKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III
sporulation protein AG [Cellular processes, Sporulation
and germination].
Length = 186
Score = 30.8 bits (70), Expect = 0.43
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ L E+ EE + E+ E E + E ++E E + E++ E E KE
Sbjct: 15 LLLIVSSFFSSSEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.5 bits (64), Expect = 2.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E EE + E+ + E + E +KE+E + E++ E E +E EK
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEILEK 72
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 31.1 bits (71), Expect = 0.44
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE-KEVARRWGVQ 83
E + E E EE +EE EEE E ++ A G
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFA 74
Score = 30.7 bits (70), Expect = 0.57
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E E E EE EEE EEE E ++ +E
Sbjct: 27 PPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
Score = 30.3 bits (69), Expect = 0.77
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E E E E E+ EEE EEE E
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEA 63
Score = 28.7 bits (65), Expect = 2.1
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
D E E + E +E +EE EEE E
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEA 63
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 30.2 bits (68), Expect = 0.45
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 18 IELRIFL-----QTLDEKEEEEEEEEEEEEKKEEE 47
I IF+ L K+EEE+EEE E KEEE
Sbjct: 79 IAASIFMFVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 29.8 bits (67), Expect = 0.58
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE 50
+++F + +KEEE+EEE E K+EE E
Sbjct: 87 VKVFNKLTSKKEEEKEEEIPEPTKEEELLGE 117
Score = 28.2 bits (63), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEE 65
K +KEEEKEEE E +EEE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
Score = 27.5 bits (61), Expect = 4.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 53 KEEEEEEKEEEEEEEEEEEEEKEV 76
++EEE++EE E +EEE E+
Sbjct: 95 SKKEEEKEEEIPEPTKEEELLGEI 118
Score = 27.1 bits (60), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE 52
+F++ ++ ++EEE+EEE E KEEE
Sbjct: 85 MFVKVFNKLTSKKEEEKEEE--IPEPTKEEE 113
Score = 27.1 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 53 KEEEEEEKEEEEEEEEEEEE 72
++EEEKEEE E +EEE
Sbjct: 94 TSKKEEEKEEEIPEPTKEEE 113
Score = 26.3 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 43 KKEEEEKEEEKEEEEEEKE 61
K+EEEKEEE E +E+E
Sbjct: 95 SKKEEEKEEEIPEPTKEEE 113
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 30.7 bits (70), Expect = 0.45
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
L+T+ E +E E + E +E+ EE E E EE E+ E E E+E+ +
Sbjct: 3 LETVVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQ 57
Score = 27.3 bits (61), Expect = 5.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
++ E E +E EE E E + EE E+ E E E E E+ +
Sbjct: 12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQE 62
Score = 26.9 bits (60), Expect = 8.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 28 DEKEEEEEEEEEEEEKKEEE---EKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
DE E E +++ EE E E + EE E++E E E E E+ E+E+
Sbjct: 12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQEL 63
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 31.3 bits (71), Expect = 0.46
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+ EL + + LDE +E +++ + + E+++E K EE + E E++ EE E E
Sbjct: 110 LEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELE 169
Query: 74 KEVAR 78
+E
Sbjct: 170 REKFE 174
Score = 29.4 bits (66), Expect = 2.0
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E+E E K +K+ ++ E + EE + E EKK EE E E+E+ EE+
Sbjct: 119 LEKELDELSKELQKQLQNTAE-IIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQL 177
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKN 85
E + E +E E++ +W + K
Sbjct: 178 HEANLDLEFKENEEQRESKWAILKK 202
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 31.4 bits (71), Expect = 0.47
Identities = 11/45 (24%), Positives = 13/45 (28%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E + E+ EE E E EE EE
Sbjct: 710 ETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETT 754
Score = 29.5 bits (66), Expect = 1.8
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 6 VEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
VE D G +R + ++ ++E E + E+ +E E +
Sbjct: 692 VEADDGDNTDR-----VNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTT 746
Query: 66 EEEEEEEEKE 75
EE EE
Sbjct: 747 EEPTEETTTG 756
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 30.7 bits (69), Expect = 0.47
Identities = 19/76 (25%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+VEK+ +E+E+ + E+ E E+E+ ++ + +++ +E EE K++
Sbjct: 2 EEVEKEINKEEEKDVNNL-------SSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKL 54
Query: 64 EEEEEEEEEEKEVARR 79
+++E E +E ++A+R
Sbjct: 55 QQKEVEAQEYLDIAQR 70
Score = 29.9 bits (67), Expect = 0.87
Identities = 17/77 (22%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
++E E+E +EEE++ ++ E E+E+ ++ + +++ +E +E+ ++ QK
Sbjct: 1 MEEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQ-QKEV 59
Query: 87 PAMNYDKLSRSLRYYYE 103
A Y +++ L+ +E
Sbjct: 60 EAQEYLDIAQRLKAEFE 76
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 30.8 bits (70), Expect = 0.48
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E + + KER L L L E+ E+ E+E E+ +++ E ++ E E +E
Sbjct: 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149
Query: 62 EEEEEEEEEEEEKEV 76
E E EE +E
Sbjct: 150 EVAEIREEGQELSSK 164
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 31.3 bits (71), Expect = 0.48
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE+ + ++K++++E+ + KEE++E+ E E+ +E EE KE
Sbjct: 340 QENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKE 388
Score = 28.6 bits (64), Expect = 3.7
Identities = 13/44 (29%), Positives = 29/44 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+E + EE+ + +++EK++E+ + +EEK+E+ E E+ +E
Sbjct: 338 NVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 28.6 bits (64), Expect = 3.9
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ T +E + EE+ +++E+K+EE + KEE++E+ E E+ KE+
Sbjct: 328 ASIATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKEL 382
Score = 28.2 bits (63), Expect = 5.0
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E++R + +E + EEK + +++++++EE K +EE++E+ E E
Sbjct: 317 EEKRLVCKLGSASIATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFE 376
Query: 73 EK 74
++
Sbjct: 377 KR 378
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 30.9 bits (70), Expect = 0.50
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE-----------KEE 55
E ++ +K E I +Q + + E+ E + EE + EE +E E + E
Sbjct: 97 ELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPE 156
Query: 56 EEEEKEEEEEEEEEEEEEKEV 76
EE E E +E EE + E E +V
Sbjct: 157 EETEIEVDEPEEPKPEPELDV 177
Score = 29.8 bits (67), Expect = 1.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EEEE++ E+EE + + + + E+ E + EE +EE EE E
Sbjct: 94 FGGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPE 142
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 31.2 bits (71), Expect = 0.51
Identities = 17/60 (28%), Positives = 27/60 (45%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
I +R ++ + E E EEE + EEE +E + E+ +EE+ KEV
Sbjct: 459 FIIVRPVIRPRRRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEV 518
Score = 28.1 bits (63), Expect = 4.4
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE-----EE 68
+ R E + + EEE+ EE +E+ EE+ KE E +E
Sbjct: 470 RRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLERLREMAKE 529
Query: 69 EEEEEKEVARRW 80
+ E +V R+W
Sbjct: 530 DPERVAKVIRQW 541
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 31.0 bits (70), Expect = 0.51
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE- 62
E++EKD E E+ I ++ Q +E E+E E+ +EEE + EE +E E+ EE
Sbjct: 364 ERLEKDV-EEGEKTI-VKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEEN 421
Query: 63 ------EEEEEEEEEEEKEVARRWGVQKN 85
+EE+E E+ + E + V+K
Sbjct: 422 FLKELSKEEKELLEKLKMEASE---VEKL 447
Score = 28.3 bits (63), Expect = 4.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEE-EKEEEEEEK 60
E EK + G+E+E + + L E E++EE +E K+E+E E+ + E E EK
Sbjct: 387 ELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVEK 446
Query: 61 E 61
Sbjct: 447 L 447
Score = 27.9 bits (62), Expect = 5.5
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
E E E+ EE EK KE + E+E E+E E+ +EE+ + +R +++
Sbjct: 359 EPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEE 410
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 30.7 bits (70), Expect = 0.51
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 9 DKGREKERAIELRIFL---QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
D R+I L +L L+ + +EEE E+ EE E+ E KEE E
Sbjct: 203 DDAI---RSIALIYWLLARAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 28.0 bits (63), Expect = 3.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E + ++EE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E + EEE EE+E+ EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 30.7 bits (70), Expect = 0.52
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E+ +K E+ K +K++ +E K++E+ ++ E EE K
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKN 45
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/48 (25%), Positives = 31/48 (64%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ E+ + +++++KE ++KE+ ++ E EE + EE + +++ E A
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENA 60
Score = 28.0 bits (63), Expect = 4.2
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E+ + E+ + +K+++ KE +K+E+ ++ E EE + EE + +K+ A
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAP 56
Score = 27.7 bits (62), Expect = 4.3
Identities = 10/52 (19%), Positives = 31/52 (59%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
L+++ + E+ + +++K +E K++E ++ E +E + EE + +++ +
Sbjct: 8 LEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
Score = 26.9 bits (60), Expect = 9.7
Identities = 10/49 (20%), Positives = 28/49 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
K E+ + ++++ K+ +++++ +K E EE K EE + +++ +
Sbjct: 13 RKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 31.0 bits (70), Expect = 0.52
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
+Q+++++ + E + EK+ EEK+ +KEEEE + EE E ++
Sbjct: 478 MQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQ---A 534
Query: 84 KNRPAMNYDKLSRSLRYYYE-KGIMQKVAGERYVYK 118
K M KL L+ E +++K A E Y+
Sbjct: 535 KQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQ 570
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 31.2 bits (71), Expect = 0.53
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E K + + + + A Q L + E++ EE + +K E + + +E K+
Sbjct: 60 ELRKFQTREAAKVKDAE-----AQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKD 114
Query: 62 EEEEEEEEEEEEKEVARR 79
EE E +EK R
Sbjct: 115 SGEEIAEMMRDEKVPIRE 132
Score = 30.8 bits (70), Expect = 0.58
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKE-EEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+++ E+ ++ ER+ I +T + K+ EE E +EK E EE E
Sbjct: 85 EKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALY 144
Query: 61 EEEEEEEEEEEEEKEVARRW 80
++E + E+ R
Sbjct: 145 KQEIQSPTRLNLINELLRAG 164
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 30.1 bits (68), Expect = 0.54
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEE-----EEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
DK + R EL T +E E ++E EE E +E +K ++ +KE
Sbjct: 64 RIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKE 123
Query: 62 EEEEEEEEEEEEKE 75
++E ++ +E EKE
Sbjct: 124 QKELRKKLDELEKE 137
Score = 27.0 bits (60), Expect = 5.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ E EE ++ +K ++E+KE K+ +E EKEE
Sbjct: 104 GDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.4 bits (71), Expect = 0.54
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
KEE E E + EE+++ EEEK + + + K E E+ E+ + + A R
Sbjct: 263 KEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKKASR 312
Score = 31.0 bits (70), Expect = 0.73
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
L+EK E E+ +EE ++E + +E+ + EEE+ E + + + E EK
Sbjct: 251 LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEK 298
Score = 29.1 bits (65), Expect = 2.6
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
KD E E ++ F L E++ E E+ +EE + E + EE++ EEE+ E +
Sbjct: 231 KDFCVEIEGGMDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRA 290
Query: 68 E---EEEEEKEVAR 78
+ E E+ +E +
Sbjct: 291 QAKAEVEKRREKLQ 304
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 31.0 bits (70), Expect = 0.55
Identities = 20/80 (25%), Positives = 32/80 (40%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++E + + E+ + +E E E EE E EE +E +E ++
Sbjct: 311 LKERILALYERIERLELLLEERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDR 370
Query: 61 EEEEEEEEEEEEEKEVARRW 80
E EEE E EE E+
Sbjct: 371 ESEEELEAALEELLELLDEG 390
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 30.7 bits (70), Expect = 0.56
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EEEKE++K +EEK+ +EE+E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 29.9 bits (68), Expect = 0.98
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E+++E++K KEE++ KEE+E+ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 28.8 bits (65), Expect = 2.0
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
EEE+EKK+ KEE+K +EE+++ EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 27.6 bits (62), Expect = 4.9
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 37 EEEEEEKKE--EEEKEEEKEEEEEEKEE 62
EEE+E+KK +EEK+ KEE+E+ +E
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 30.6 bits (69), Expect = 0.57
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KE EL+ L+ L +++EE +E EE E + EE +E K E E EE ++ E
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193
Query: 74 KEVARRW 80
++ +RW
Sbjct: 194 YDLKKRW 200
Score = 28.0 bits (62), Expect = 5.0
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEE---KEEEEEEKEEEEEEEEEEEEEKEVARRW 80
LQ + E + +E+ EE +EK EE +KE+E KE EE E E EE +E + E E +R
Sbjct: 124 LQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183
Query: 81 GVQKNRPAMNYD 92
+ K P YD
Sbjct: 184 EMLKKLPGEVYD 195
Score = 27.2 bits (60), Expect = 9.4
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+L+ + L EK EE + +E+EE KE EE E E EE +E + E E EE
Sbjct: 132 DLKEDYEELKEKLEELQ-KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 31.2 bits (71), Expect = 0.57
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKE-EEKEEEE----------EEKEEEEEEEEEEEEE 73
Q L K +E E E++EEE +E+ K+ EK E+ E K EEEEE++ E E
Sbjct: 87 QGLQRKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILE 146
Query: 74 KEV 76
K +
Sbjct: 147 KAL 149
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 30.4 bits (69), Expect = 0.57
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
L E EEE EE EE ++ E+ KEE K E EE EE + E+E E
Sbjct: 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAE 57
Score = 28.1 bits (63), Expect = 3.0
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
L++ ++ E EEE ++ EE EE E+ +EE + E EE EE K
Sbjct: 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRK 51
Score = 28.1 bits (63), Expect = 3.8
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EL ++ + + EEE EE EE ++E E+ +EE + E EE EE + E+E E+E
Sbjct: 3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERE 59
Score = 27.3 bits (61), Expect = 6.4
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
ME EK+ K RE E E I + +E E+ +EE + E E+ EE + ++E E E+
Sbjct: 2 MELEKLIKKILREAEEEAE-EILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60
Query: 61 EEEEEEEEEEEEEKEVARR 79
+ E K + +
Sbjct: 61 QRIISSALLEARRKLLEAK 79
Score = 27.0 bits (60), Expect = 7.6
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L E E+ ++ E E++ EE EE +EE E+ KEE + E EE EE
Sbjct: 1 LMELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEE 47
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 30.1 bits (68), Expect = 0.58
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EEEE E EE E+ E EE EKE +E+EE +E E A+
Sbjct: 9 EEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKS 57
Score = 29.3 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EEEE E E+ EE+E + E+ E+E +E+EE
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEET 49
Score = 28.9 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+EE E ++ EE + + EE E+E +E+EE +E EK +
Sbjct: 7 FPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKS 57
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 29.9 bits (68), Expect = 0.58
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+E KKEEE ++E +E E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++E +KEEE ++E EE E E E E E
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIER 130
Score = 28.4 bits (64), Expect = 1.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+E K+EE+ ++E E+ E E E E E++ AR
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.0 bits (63), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E K+EEE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 26.8 bits (60), Expect = 5.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+E ++EEE ++E E+ E + E E + E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 30.6 bits (70), Expect = 0.59
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+TLD K+E E++EE E+KE+E +++ EE+E+E EE EE+++E + ++
Sbjct: 92 ETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERIS 144
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 31.0 bits (70), Expect = 0.60
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
ELR FL+ + E +EE+ EEEE+ + EE E E E
Sbjct: 383 ELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 29.4 bits (66), Expect = 1.8
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+T DE + +E+ K+ E +EE+ EEEEE + EE E E
Sbjct: 379 KTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 29.4 bits (66), Expect = 1.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K++ + E +E+E EEEEE + EE E
Sbjct: 389 KEKGHPVVKRVVREVDEEEIEEEEEAMQPEEME 421
Score = 29.1 bits (65), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 53 KEEEEEEKEEEEEEEEEEEEEKE 75
+E +EEE EEEEE + EE E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEME 423
Score = 29.1 bits (65), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E EEE EE+EE + EE E E EV
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFEV 427
Score = 27.9 bits (62), Expect = 6.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E +EEE E+EEE + EE E E
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEMEME 423
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.9 bits (70), Expect = 0.60
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
E+ +E+EE EE E E+EE+E+ ++EEEE+++ +R Q
Sbjct: 138 EKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
Score = 30.5 bits (69), Expect = 0.67
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
KE+ E+EE EE E E++EEE+ +KEEEE++ + + ++ +
Sbjct: 137 KEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDE 186
Score = 30.2 bits (68), Expect = 1.0
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E+EE EE E E+E++E+ +KEEEE++ + + ++
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
EK E+EE EE + E+EE+E+ + ++E+EE++ + + ++
Sbjct: 138 EKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 31.0 bits (70), Expect = 0.61
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQ--TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EE + E R++ + IE R+ + +LD K+E +E+ E KE+ ++ K +E E
Sbjct: 86 EEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDERE 145
Query: 60 KEEEEEEEEEEEEEKEVA 77
++ E+ EE+++ E + VA
Sbjct: 146 EQVEKLEEQKKAELERVA 163
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 30.0 bits (68), Expect = 0.63
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L K+EE E+E+E+EE+ + E EKE E EK++ E + +EE++
Sbjct: 77 LKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.8 bits (69), Expect = 0.63
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KK +E E +++EEEEE+EEEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 30.0 bits (67), Expect = 0.98
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
KE+E +E+EEE+EEEEEEE E EE ++
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQG 158
Score = 30.0 bits (67), Expect = 1.1
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 19/65 (29%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEE-------------------EEKEEEEEEEEEE 70
KE+E +E+EEEEE++EEEE E E+ E+ + EE EEE
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVT 190
Query: 71 EEEKE 75
E E E
Sbjct: 191 EAEAE 195
Score = 29.7 bits (66), Expect = 1.3
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
K K+ KE+E +E EEEEEEEEEEE E E
Sbjct: 121 KAGNAGKKATKEDESDEDEEEEEEEEEEEAEVE 153
Score = 29.3 bits (65), Expect = 1.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
D EE + + EEE +EE EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 29.3 bits (65), Expect = 1.6
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
++ KE+E E+E+EEEEEE+EE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 29.3 bits (65), Expect = 1.8
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
K+ +++E E+EEEE+EEEEEE E EE E+
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQGT 159
Score = 29.3 bits (65), Expect = 1.9
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+K +E++ +E EEEEEE+EEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.9 bits (64), Expect = 2.6
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
++ +E+E +E++EEEEEE+EEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.5 bits (63), Expect = 3.6
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+K +++E +E++EEEEEEEEEE E +E
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEE 154
Score = 28.1 bits (62), Expect = 4.0
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
++ +E+E E+EE+EEE+EEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.1 bits (62), Expect = 4.7
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEV 76
++ +E+E E+EEEEEEEEEEE EV
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEV 152
Score = 27.4 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE + EE+ EE+ EEE E+ + E+EE E E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 27.4 bits (60), Expect = 7.8
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
R +Q+ + EE + + EE+ EEE EE+ E+ + E+EE E E
Sbjct: 41 RFSVQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 30.8 bits (69), Expect = 0.64
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAM 89
+E +E E ++ ++ ++ + K + EE+ ++ EEE+ + K+ G +K +P +
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGK---GSKKTQPGV 146
Score = 29.3 bits (65), Expect = 2.1
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E E ++ E+ ++ K + + EE+ ++ EEE + ++ + +K
Sbjct: 96 ESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
Score = 27.3 bits (60), Expect = 9.1
Identities = 10/55 (18%), Positives = 30/55 (54%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
R F + + ++ E ++ E+ ++ K + EE +++ EE++ + ++ + K+
Sbjct: 87 RSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal.
This eukaryotic domain is found at the C-terminus of
26S proteasome regulatory subunits such as the
non-ATPase Rpn3 subunit which is essential for
proteasomal function. It occurs together with the
PCI/PINT domain (pfam01399).
Length = 68
Score = 28.4 bits (64), Expect = 0.66
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
++E++EE+K EE +E ++ E E KE E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 26.5 bits (59), Expect = 3.0
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++EKKEEE+ EE +E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 25.7 bits (57), Expect = 5.5
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+E+KEEEK EE E+++ E E +E E +
Sbjct: 36 KEKKEEEKAEEARERDQLELELAKELSEGD 65
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 30.4 bits (68), Expect = 0.68
Identities = 14/68 (20%), Positives = 40/68 (58%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
++K+E +E++E+ EE + + EK+E+ ++ + + + +++ ++ K A G+ +R
Sbjct: 152 NQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLSPDRT 211
Query: 88 AMNYDKLS 95
Y+ ++
Sbjct: 212 RPRYNGIT 219
Score = 29.2 bits (65), Expect = 1.5
Identities = 11/49 (22%), Positives = 32/49 (65%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ +++E +E++EK EE E + EK+E+ ++ + + + +++ ++ +R
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKR 199
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 30.8 bits (71), Expect = 0.70
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
L+E E EEEE EE+ + +EEEK+ E+
Sbjct: 326 LEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.5 bits (65), Expect = 3.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
EL L+ E EEEE EEE K EEE+++ +E+
Sbjct: 319 LYAVAEL---LEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDED 361
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 30.8 bits (69), Expect = 0.72
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEE----EKEEE------EEEKEEEEEEEEEEEEEK 74
LD ++E+ + E +E +EE +E E+ E EE+E EEE+EEE+
Sbjct: 726 PKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEE 785
Query: 75 EV 76
Sbjct: 786 NK 787
Score = 28.5 bits (63), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
D E EE+E EE+KEEEE +E + ++K+ +
Sbjct: 760 EQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 30.6 bits (69), Expect = 0.74
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E A EL + L + E EE+E+EEE K + EE E E +EE +E E
Sbjct: 149 EEADELIPKVDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYE 205
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 30.6 bits (69), Expect = 0.74
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E E E EEE EE E E E E E+EEK +E+ E+ ++E+
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQED 252
Score = 29.5 bits (66), Expect = 1.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ + +E + E + E E E EEE E+ E+E E E E+EEK +
Sbjct: 194 DDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKAL 241
Score = 28.3 bits (63), Expect = 4.0
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E E EEE ++ E+E E E E+EE+ +E+ E+ ++E+ A++
Sbjct: 212 SEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKK 260
Score = 27.9 bits (62), Expect = 4.5
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+ E+E E E E+E+K +E+ E+ ++E+ + ++ EEEEE+ E
Sbjct: 224 EEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Score = 27.9 bits (62), Expect = 4.6
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E E + E + + DE E E E+EE+ +++ E+ ++E+ + +K EEEEE+ E
Sbjct: 213 EVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGERP 272
Query: 73 E 73
E
Sbjct: 273 E 273
Score = 27.5 bits (61), Expect = 7.4
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E +VE E E L+ DE++ +E+ E+ +++ ++ EEEEEK E
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 63 EEE 65
E
Sbjct: 271 RPE 273
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 30.7 bits (69), Expect = 0.74
Identities = 15/74 (20%), Positives = 24/74 (32%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
D++ E E+ K EE+E E + E + E+ +E + G
Sbjct: 25 DKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESDKFV 84
Query: 88 AMNYDKLSRSLRYY 101
K L Y
Sbjct: 85 GTPLVKDDYDLVYI 98
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 30.8 bits (69), Expect = 0.75
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
Q + E +E + EE+E+KEE +K+ + E E+ E+ E+ + + EV R
Sbjct: 23 QLCNVLCESDEGKSEEKEEKEEVKKDRDNIPEIEDGEKPTSGIEQHQYQTEVTR 76
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 30.7 bits (70), Expect = 0.75
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E E +E + ++ + K EKE+ EE+ E E ++EV R
Sbjct: 10 LGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDR 60
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/64 (17%), Positives = 24/64 (37%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ + I + E + E+ + + +KE+ E++ E E + E +
Sbjct: 1 EELDALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDR 60
Query: 70 EEEE 73
EE
Sbjct: 61 LREE 64
Score = 28.0 bits (63), Expect = 4.5
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
EE D+ + E + +L L++ + + E+E+ EE+ E E + E +
Sbjct: 1 EELDALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDR 60
Query: 63 EEEEEEEEEE 72
EE E +E
Sbjct: 61 LREEIERLKE 70
Score = 27.6 bits (62), Expect = 7.2
Identities = 15/67 (22%), Positives = 24/67 (35%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E L T + E+E+ EE++ E E K E + +E
Sbjct: 4 DALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLRE 63
Query: 62 EEEEEEE 68
E E +E
Sbjct: 64 EIERLKE 70
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 30.4 bits (69), Expect = 0.75
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEK---EEEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
+ EEE +EE +K +E EK + E E++E EEE E EE K G +K
Sbjct: 72 VEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKG 131
Query: 86 R 86
R
Sbjct: 132 R 132
Score = 30.4 bits (69), Expect = 0.78
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 12 REKERAIEL-RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+EK + E+ + + L KE+E EEEEE+ ++ E+ ++ +E E+ EE+ E E
Sbjct: 14 KEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVE 73
Query: 71 EEEKEV 76
E+E
Sbjct: 74 AAEEEA 79
Score = 28.4 bits (64), Expect = 3.6
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
EE K E K ++ +I ++ +Q E+EE EEE E E+ + E EE E+ EE
Sbjct: 76 EEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEG 135
Query: 61 EEEEEEEEEE 70
EE E E+
Sbjct: 136 LEEVRELIEQ 145
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 30.6 bits (70), Expect = 0.76
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+L+E+ E EE E ++EEE+KEE+K E+ +
Sbjct: 62 SLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 30.6 bits (70), Expect = 0.80
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE---EEEEKEVAR 78
EE EE+++ EE E EEEEEK+EE++ E+ K V R
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMR 105
Score = 27.9 bits (63), Expect = 6.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGV 82
E+ E+ EE E E+EEE++EE++ A + V
Sbjct: 65 EQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKV 102
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 30.9 bits (70), Expect = 0.79
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE----E 58
+ V + +G + +R T+ + E + + E + + EEK +E
Sbjct: 864 DNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGA 923
Query: 59 EKEEEEEEEEEEEEEK 74
+ EE + +E ++K
Sbjct: 924 DSPEELMKRAKEYQDK 939
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 30.0 bits (68), Expect = 0.79
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEK 53
T+D+K + EEE+ E++++ EE E +
Sbjct: 140 TVDDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 4.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+++ + E+E+ E+++E EE E + K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 27.3 bits (61), Expect = 5.3
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEE 59
+++ + EEEK E++++ EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.3 bits (61), Expect = 5.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
+ + +EE+ E+++E +E E + + K +A G++K
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNGPKVHKSLAEILGIKK 183
Score = 26.9 bits (60), Expect = 7.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ K EEE+ ++++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 26.9 bits (60), Expect = 8.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEE 65
+++ K EEEK E+ +E EE + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 8.8
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEK 60
+++ + EE+K E+++E E+ E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 9.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEE 64
+++ K EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.5 bits (59), Expect = 9.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+++ + EEE+ E+++E EE E + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 30.6 bits (69), Expect = 0.81
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 1 MEEEKVEKDKGREK-ERAIELRIF-----LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE 54
E + E ++ E+AI+ +Q E E E +KE E + +E+
Sbjct: 282 KAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERS 341
Query: 55 EEEEEKEEEEEEEEEEEEEKEVARRWGVQKN 85
+ + +EE + A +
Sbjct: 342 YFINAAQRQAQEEAKAAANIAEAIGAQAEAA 372
Score = 29.8 bits (67), Expect = 1.3
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E++ K + +E I L + + E E E+ E E+ +EEK + E+E +
Sbjct: 253 EQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQ 312
Query: 62 EEEEEEEEEEEEKEVAR 78
+ E E + R
Sbjct: 313 HAKALEAREMRVGLIER 329
Score = 29.8 bits (67), Expect = 1.4
Identities = 15/77 (19%), Positives = 28/77 (36%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E R+KE +E + ++ + + +EE + E + + E +E
Sbjct: 319 AREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARE 378
Query: 62 EEEEEEEEEEEEKEVAR 78
EE E E+ A
Sbjct: 379 TEEAERAEQAALVAAAE 395
Score = 28.6 bits (64), Expect = 3.6
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E + + K +E+ Q K E+ E + + E E K E E
Sbjct: 233 ETEIAIAEANRDAKLVELEVE---QQPAGKTAEQTREVKIILAETEAEVAAWKAETRREA 289
Query: 61 EEEEEEEEEEEEEKEVARRWGVQ 83
E+ E E+ +E++ VQ
Sbjct: 290 EQAEILAEQAIQEEKAQAEQEVQ 312
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 30.4 bits (68), Expect = 0.83
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
L I L + KE+ EE+E +E+ E+ + ++ E++ E + EE +E + A
Sbjct: 88 LAIGLPIVKRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQPAGV 147
Query: 80 WGVQKNRPAMN 90
+P +
Sbjct: 148 NVANNPQPQVQ 158
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase
(metG) is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase
that is present at the C-terminus of MetG in some
species (E. coli, B. subtilis, Thermotoga maritima,
Methanobacterium thermoautotrophicum), and as a
separate beta chain in Aquifex aeolicus. It is absent
in a number of other species (e.g. Mycoplasma
genitalium, Mycobacterium tuberculosis), while
Pyrococcus horikoshii has both a full length MetG and a
second protein homologous to the beta chain only.
Proteins hit by This model should called methionyl-tRNA
synthetase beta chain if and only if the model metG
hits a separate protein not also hit by This model
[Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 29.3 bits (66), Expect = 0.83
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+KK EE K + +++E++ E E+ E ++E
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
Score = 27.8 bits (62), Expect = 3.3
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+++ EE K + +K+E+K+E E+ E ++E ++ EK
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKETITIDDFEK 39
Score = 26.2 bits (58), Expect = 9.6
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+++ EE + K ++KE++ E E+ + ++E
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 30.4 bits (69), Expect = 0.83
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E + K+K R+ + RI ++EE+ E E ++E+E E+ EE +E +
Sbjct: 141 EKEPEDRKEKPRKSRAELYKRIDADYYGYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQ 200
Query: 61 EEEEEEEEEEEEEK 74
+E+ + EE+E EE
Sbjct: 201 DEDLQAEEDEREED 214
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 30.5 bits (69), Expect = 0.86
Identities = 11/56 (19%), Positives = 31/56 (55%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
L+ L D++ + + ++ ++ ++++E ++E E+ + EE EE ++ + E
Sbjct: 466 LKNMLGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAE 521
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 30.4 bits (68), Expect = 0.88
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E+ I D+ EEEE E +EE ++ EE+K+E E+ E +EE+ + +EE
Sbjct: 229 EIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEE 280
Score = 28.1 bits (62), Expect = 6.0
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EEEE E EE E+ EE ++E EK E +EE+ + ++E+
Sbjct: 242 EEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEI 281
Score = 27.7 bits (61), Expect = 6.1
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+EEE E +EE EE +E++++ EK E ++E+ + +EE + E +V R
Sbjct: 238 DKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDR 291
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 29.5 bits (67), Expect = 0.89
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E EE +EEEEE+ ++ + E E+ E + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 29.1 bits (66), Expect = 1.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E EE +EEEEEE + ++ E+++ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 27.9 bits (63), Expect = 3.1
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E EE +EEE EEE+ + + E+E+ E ++ + + +V
Sbjct: 111 EPEEADEEE---EEEDDDADDSPEDEDPEPKDPPKTKGRPSLKV 151
Score = 27.2 bits (61), Expect = 6.4
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E EE EEEE+E++ ++ E E+ E ++ + + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLK 150
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This
family represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 28.7 bits (65), Expect = 0.92
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKE----EEEEEKEEEEEEEEEEEEEKEVARR 79
KEE E+E EE ++E E KE E E E EK+ E+E EE+ +E K +
Sbjct: 35 KEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKRSFNK 88
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 0.93
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E EKE++K +EEK+ +EE+++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 29.1 bits (66), Expect = 1.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E ++E++K KEE++ KEE+++ EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 28.7 bits (65), Expect = 2.3
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 37 EEEEEEKKE--EEEKEEEKEEEEEEKEE 62
E E+E+KK +EEK+ KEE+++ +E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 27.5 bits (62), Expect = 5.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
E E+EKK+ KEE+K +EE+ + EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|234756 PRK00420, PRK00420, hypothetical protein; Validated.
Length = 112
Score = 28.8 bits (65), Expect = 0.95
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ +EEE++ E +E KE EE EK +K +E+E+ E E
Sbjct: 53 KSDEEEKKVESKETLKEVEEVLIEKINYLAKKLKEDEDIERITE 96
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 30.4 bits (69), Expect = 0.96
Identities = 25/124 (20%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
I L + + +E+ E+EE E +K+ E +E+ E+ ++ ++ +E +++ + E+++A
Sbjct: 454 IVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDLAT--- 510
Query: 82 VQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTSVTNGLIDIRFYRSLKPNFT 141
P + + + + +V+ E V TNG+ +R Y L +
Sbjct: 511 ----LPTLKLGDVPDPIEKTSLE---TEVSNEAKVLHHDL-FTNGITYLRLYFDLDMLPS 562
Query: 142 DFYP 145
+ P
Sbjct: 563 ELLP 566
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 30.6 bits (69), Expect = 0.97
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+E+ + ++ L E EEE+E E + KK EE + + +E++ E E + E
Sbjct: 342 NDTLEI-LIIKLLALSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIE 393
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily;
Phd is a cytosolic regulator of G protein functions. It
specifically binds G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane. This impedes the formation
of a functional G protein trimer (G protein
alphabetagamma), thereby inhibiting G protein-mediated
signal transduction. Phd also inhibits the GTPase
activity of G protein alpha. Phd can be phosphorylated
by protein kinase A and G protein-coupled receptor
kinase 2, leading to its inactivation. Phd was
originally isolated from the retina, where it is highly
expressed and has been implicated to play an important
role in light adaptation. It is also found in the pineal
gland, liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 29.6 bits (67), Expect = 1.00
Identities = 12/60 (20%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 57 EEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYV 116
++ KE E+E+++++E+++E +++ ++ R + KL R+ + + +GE+++
Sbjct: 20 KQLKESEQEDDDDDEDKEEFLQQY--REQRMQEMHAKLPFGRRFGK---VYELDSGEQFL 74
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns
from pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and
Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16
promotes a conformational change in the spliceosome
that leads to protection of the 3'ss from targeted
RNase H cleavage. This change, which probably reflects
binding of the 3'ss PyAG in the catalytic centre of the
spliceosome, requires the ordered recruitment of Slu7,
Prp18, and Prp22 to the spliceosome. There is a close
functional relationship between Prp8, Prp18, and Slu7,
and Prp18 interacts with Slu7, so that together they
recruit Prp22 to the spliceosome. Most members of the
family carry a zinc-finger of the CCHC-type upstream of
this domain.
Length = 236
Score = 29.7 bits (67), Expect = 1.0
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY 91
E +E EE EK EE K+ + ++E++ + + E+E+EE E K R +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMGDSDSKTRTTV-- 74
Query: 92 DKLSRSLR 99
R+LR
Sbjct: 75 ----RNLR 78
Score = 27.4 bits (61), Expect = 7.0
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
KE EE E+ EE +K+ + K+E+ ++ + ++E+EE +E +
Sbjct: 20 KEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 27.0 bits (60), Expect = 8.5
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ + ++E E+ EE ++ + KKE++ + + E+E+EE +E +
Sbjct: 19 YKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 29.3 bits (66), Expect = 1.0
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
++E E EEE E + + E + +E E++ ++ + + + +
Sbjct: 72 KEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQ 131
Query: 89 MNYDKLSRSLRY 100
DK SL Y
Sbjct: 132 DVVDKSQASLDY 143
Score = 27.8 bits (62), Expect = 3.6
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 21 RIF----LQTLDEKEEEEEEEEEEEEKKEEEEKEE-EKEEEEEEKEEEEEEEEEEEEEKE 75
IF + L + E +EE E EEE + + + E +E E++ ++ K
Sbjct: 55 EIFRHSEIHALLRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKS 114
Query: 76 VARRWGVQKNRP 87
R +K+
Sbjct: 115 C--RDKERKSAK 124
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 30.0 bits (68), Expect = 1.1
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE----- 66
REK+ A EL D K+ E E+E E E+K EE ++ + + KEE + E
Sbjct: 37 REKKIAGELA----DADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLL 92
Query: 67 EEEEEEEKEVARRW 80
+E EE E+ +W
Sbjct: 93 DEAREEADEIREKW 106
Score = 28.9 bits (65), Expect = 2.2
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 24 LQTLDEKEE---------EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
L +D +E+ + ++ E E+E++E EEK EE +++ E + +EE + E ++
Sbjct: 31 LDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQR 90
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 30.2 bits (68), Expect = 1.1
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 1 MEEEKVEKDKGREKERAIE--LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
++EE +EK + R +ERA E + L + + EE +EEE E +++ +E E +
Sbjct: 108 VKEEMIEKVRDRAEERAEERIVDSLLPPA-KNQWGNMEEIQEEESVREAFRKKLREGELD 166
Query: 59 EKEEEEEEEEEEEEEKEV 76
+KE E E + E+
Sbjct: 167 DKEIEIEVSAKMPSGIEI 184
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 29.7 bits (67), Expect = 1.1
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+L++K + EE + +EEEE EEE+E+ +EEK+EE ++ ++
Sbjct: 88 SLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEM 137
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 28.4 bits (64), Expect = 1.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++ K+++EE+EE+KEE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGC 87
Score = 27.3 bits (61), Expect = 2.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
++ +E++EE EE KEE + +KEEE E +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 26.5 bits (59), Expect = 5.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E ++ +E++EE E+ +EE E K+EEE ++ +
Sbjct: 47 EVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
++ +E++++ EE+KEE E ++E+E E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 26.1 bits (58), Expect = 7.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
++ +E++EE ++++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 25.7 bits (57), Expect = 8.1
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++ ++K+EE +E+++E E K+EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 29.1 bits (66), Expect = 1.1
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L+E E + E EE+E+++ + E + + EE K ++ +++EE +
Sbjct: 75 LNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal
Holliday junction resolvase. This domain is found in
various predicted bacterial endonucleases which are
distantly related to archaeal Holliday junction
resolvases.
Length = 153
Score = 29.2 bits (66), Expect = 1.1
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ L I + L K E+ E E+ + E E + +E E + +E +++EE+E
Sbjct: 7 LSLFIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKE-------I 59
Query: 78 RRWGVQKNR 86
R+ V K+R
Sbjct: 60 RKDAVNKSR 68
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 30.2 bits (68), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+DE E E E + E ++ ++ +EE E E+EEEEEE EE
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 30.1 bits (69), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE + K + + + KE+EEE+EE+EE E+E
Sbjct: 459 EEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFK 495
Score = 28.5 bits (65), Expect = 3.5
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
L +++EEE+EE+EE E++ + E KE ++ ++
Sbjct: 476 LGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKD 511
>gnl|CDD|236629 PRK09849, PRK09849, putative oxidoreductase; Provisional.
Length = 702
Score = 30.0 bits (68), Expect = 1.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 90 NYDKLSRSLRYYYEKGIMQKVAGE 113
NY +L R Y Y KG+ ++V
Sbjct: 381 NYGQLHRDFTYCYSKGVFKRVLPA 404
Score = 28.9 bits (65), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 225 NYDKLSRSLRYYYEKGIMQKV 245
NY +L R Y Y KG+ ++V
Sbjct: 381 NYGQLHRDFTYCYSKGVFKRV 401
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.1 bits (68), Expect = 1.2
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
F+++L ++ EE+ E ++E +E + EE+ E+EE+E + + E + ++E
Sbjct: 399 FVRSLQKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEE 451
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 30.1 bits (68), Expect = 1.2
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+++ ++ R KER EL + +DE E EE E + + K+ +E +E
Sbjct: 254 PPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQE 313
Query: 62 EEEEEEEEEEEEKEV 76
EE EEE + +++ V
Sbjct: 314 NEELEEEYKIKKRTV 328
Score = 28.6 bits (64), Expect = 4.0
Identities = 17/71 (23%), Positives = 28/71 (39%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ DKG R ++ E E + EE+ K+ E E E +E+ +E +
Sbjct: 225 KFRLDSWDKGSRFTRTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELES 284
Query: 62 EEEEEEEEEEE 72
EE E +
Sbjct: 285 SIEEVLSEIKA 295
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 29.9 bits (67), Expect = 1.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+E E + ++ + E E E E E EEE EE+E E++ EE
Sbjct: 245 REYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 29.1 bits (65), Expect = 2.3
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + E++ + I + +E +E+ E E + + E E E+E E++
Sbjct: 211 NDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEY 270
Query: 62 EEEEEEEEEEEEKE 75
EEE EE+E E+K
Sbjct: 271 EEEAGEEQENEDKG 284
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 30.0 bits (68), Expect = 1.2
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+A R+ + E E EE E++ EE EE E+ + +++ ++E+ +
Sbjct: 811 KAKGNRLTTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E EE +EE EE EE E+ + E++ ++E
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 29.2 bits (66), Expect = 2.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
K E E EE +EE +E E+ + E+ K E++ ++E+ +
Sbjct: 823 KTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 28.8 bits (65), Expect = 3.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E EE E+E +E EE + E+ + E++ ++E+
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTG 864
>gnl|CDD|217360 pfam03087, DUF241, Arabidopsis protein of unknown function. This
family represents a number of Arabidopsis proteins.
Their functions are unknown.
Length = 230
Score = 29.7 bits (67), Expect = 1.2
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EK K G + +I R L LDE E+ + EE ++ K EE E EE E+E E
Sbjct: 160 EKKSKKGGSQSSLSI--RSELSRLDE-EKRRDNEEVKDILKRLEELENSIEELEDELE 214
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta
chain.
Length = 597
Score = 30.0 bits (68), Expect = 1.3
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY 91
+EE +E E E ++ EK +EK +EEE+ ++++EV + V NR Y
Sbjct: 21 QEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANR----Y 76
Query: 92 DKL-----SRSLRYYYEK 104
D L +R+LR +
Sbjct: 77 DLLCLEGLARALRVFLGT 94
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 30.0 bits (67), Expect = 1.3
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 4 EKVEKDKGRE---KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
VEKD+ R +E+ +L L E + E + E++ ++ E
Sbjct: 877 AVVEKDRARAEELREKRGKLEAHRAMLSGSEANSARRDTMEI---QNEQKPTQDGPAAEA 933
Query: 61 EEEEEEEEEEEEEKEVARRWGVQK 84
+ +E E EK VA +
Sbjct: 934 QPAQENTVVESAEKAVAAVSEAAQ 957
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+++ + + + E EEE+E EEEK+E K E KE
Sbjct: 476 FKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
Score = 27.2 bits (61), Expect = 9.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E + + K K + + E EEE+E + EEE+KE
Sbjct: 470 EFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKP 506
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 29.7 bits (67), Expect = 1.3
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E ++ +E + ++ EE E+ EE+ ++ E+EE+ +E E+E
Sbjct: 79 KIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEP 127
Score = 28.5 bits (64), Expect = 2.4
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E ++ +E +E+ EE E+ EEK ++ E+EE+ +E ++
Sbjct: 81 EGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEK 125
Score = 28.5 bits (64), Expect = 2.5
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
D E + +E+ E+ E+ +E+ + E+EE+ +E E+E +
Sbjct: 87 DLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 30.0 bits (67), Expect = 1.3
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EE + +++ + E+ E EE+++++EE + +KE+
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKEL 506
Score = 29.3 bits (65), Expect = 2.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
L EE + EE+ + E+ + E EE++ ++EE + ++E E
Sbjct: 462 LMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELE 507
Score = 29.3 bits (65), Expect = 2.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E + EE+ + E+ E EE+++ +EE + ++E E E
Sbjct: 467 ETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 28.9 bits (64), Expect = 3.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EE + EE+ E+ E EE+ +++EE + ++E E E
Sbjct: 463 MTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 28.1 bits (62), Expect = 4.6
Identities = 11/68 (16%), Positives = 29/68 (42%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E+ + EE+ ++ + EE++++ EE + ++E E E + + + ++
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDV 525
Query: 89 MNYDKLSR 96
R
Sbjct: 526 NKSKNKKR 533
Score = 28.1 bits (62), Expect = 5.7
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
D + EE ++ EE + E+ + EE+++++EE + +
Sbjct: 454 DSYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQK 504
>gnl|CDD|234635 PRK00104, scpA, segregation and condensation protein A; Reviewed.
Length = 242
Score = 29.4 bits (67), Expect = 1.3
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEE------EEKKEEEEKEEEKEEEEE-----EKEEEEE 65
I+ ++ L ++E EEEEE+ +E E KK +E EE KE+EEE K +
Sbjct: 67 LIKSKMLLPKVEEFEEEEEDPRQELLEKLIEYKKFKEAAEELKEQEEERAQYFSKPPSDL 126
Query: 66 EEEEEEEEKE 75
EE + E +++
Sbjct: 127 EEFDAELDED 136
>gnl|CDD|220098 pfam09057, Smac_DIABLO, Second Mitochondria-derived Activator of
Caspases. Second Mitochondria-derived Activator of
Caspases promotes apoptosis by activating caspases in
the cytochrome c/Apaf-1/caspase-9 pathway, and by
opposing the inhibitory activity of inhibitor of
apoptosis proteins (XIAP-BIR3). The protein assumes an
elongated three-helix bundle structure, and forms a
dimer in solution.
Length = 234
Score = 29.5 bits (66), Expect = 1.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
LQ + EE + +E EKK E K EE + E + E E+ E
Sbjct: 179 LQVAQSQVEEVRQLSKEAEKKLAESKAEEIQRMAEYASSIDLSELEDIPE 228
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 29.5 bits (66), Expect = 1.4
Identities = 6/42 (14%), Positives = 22/42 (52%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E +++E + +E+E+ +++ E+ ++ +E+ +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312
Score = 28.8 bits (64), Expect = 2.4
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
D+ E + +EEE ++++ E+ + +E+
Sbjct: 274 DDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.8 bits (64), Expect = 2.9
Identities = 5/39 (12%), Positives = 20/39 (51%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+ +++E + +EE+ +++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 28.4 bits (63), Expect = 3.2
Identities = 6/43 (13%), Positives = 20/43 (46%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E +++E +EE++ + ++ E+ + +E+ +
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 28.0 bits (62), Expect = 4.2
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E +++E +EEE ++ + E+ + +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 30.0 bits (68), Expect = 1.4
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EE E E K + E++ E E+ E E E E++ K
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRK 275
Score = 28.1 bits (63), Expect = 5.7
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE E E K K E+ E EE E E E+E RR
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRR 274
Score = 28.1 bits (63), Expect = 5.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE 55
E IE L L K E+ E E+ E E+E EK+
Sbjct: 233 EEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
Score = 27.7 bits (62), Expect = 6.2
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EE E + + ++ E+ E EE E E E E+K
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
Score = 27.3 bits (61), Expect = 9.2
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK 53
E A EL + L ++ E EE E + E EK+ K
Sbjct: 237 ESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRK 275
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 28.7 bits (64), Expect = 1.4
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D + + E+E E + EE EE+ E ++ + E E++EE+E +R
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQR 52
Score = 28.3 bits (63), Expect = 1.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
++ + E+E E E +E E++ E +E K E E++EE+E R
Sbjct: 3 NDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPR 54
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 30.1 bits (68), Expect = 1.4
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ K+ +E + + E + + E K+E E + A R
Sbjct: 883 ENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGR 934
Score = 28.2 bits (63), Expect = 5.5
Identities = 8/53 (15%), Positives = 21/53 (39%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
F++T E +E ++ K+ + + E + + + E ++E
Sbjct: 868 FMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNA 920
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 29.6 bits (66), Expect = 1.4
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ +E+ +EK ++++ + E E E E +
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 28.9 bits (64), Expect = 2.4
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ +EE +EK ++++ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 27.7 bits (61), Expect = 5.7
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ ++E +EK ++++ + + E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 29.0 bits (65), Expect = 1.4
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ + E+ E + + ++ EE ++ + +
Sbjct: 104 RKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
Score = 28.2 bits (63), Expect = 2.7
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKE 54
K A L + +E+ E + ++++E +K + +
Sbjct: 104 RKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
Score = 27.0 bits (60), Expect = 6.2
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ E + +K EE ++ + +
Sbjct: 117 SSNEQNSTEALQLRAKKREEHRKKWYQND 145
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 28.6 bits (64), Expect = 1.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E + + + EEK EE + E EE E K++ E+ EE E E
Sbjct: 33 VRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 28.2 bits (63), Expect = 1.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ FL + K + + EE+ ++ E E +EE E ++++E+ EE E E
Sbjct: 28 KKFLYVRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 27.0 bits (60), Expect = 5.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E + + + EE+ EE + E +EE E +++ E+ EE + +
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERI 76
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 29.6 bits (66), Expect = 1.5
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
L L + E EE E + + K+ ++ EE E+ +EE EE E R
Sbjct: 148 LLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDF 207
Query: 84 KNRPAMNYDKLSRSL--RYYYEKGIMQKVAG 112
N ++ R + R ++ +V G
Sbjct: 208 AELYDFNQCRVGRDMVARNVFKPIFEDEVIG 238
Score = 28.9 bits (64), Expect = 2.8
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+++K + RE+ E I LQ + +E EE E+ +E+ EE E+ + E
Sbjct: 150 ELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFAE 209
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 29.3 bits (66), Expect = 1.5
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 23 FLQTLDEKEEEEEEEE--------EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ ++L E + E + +E ++ +++++ +K E+++++E ++E EE E + K
Sbjct: 72 YSRSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAK 131
Query: 75 EVARRWGVQKNR 86
E W QK +
Sbjct: 132 EKYEEWCRQKAQ 143
Score = 29.3 bits (66), Expect = 1.6
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E +EE KK +E E +K +++++K EEE ++ +++++E R+
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERK 217
Score = 28.9 bits (65), Expect = 2.0
Identities = 13/49 (26%), Positives = 35/49 (71%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+ +EE ++ ++ E ++ ++++++ EEE+ ++ ++++EEEE K+ A
Sbjct: 172 ERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKA 220
Score = 28.2 bits (63), Expect = 4.1
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
++ +R +L+ L+ ++E E+E EE E ++ +EK EE ++ ++ ++ +
Sbjct: 94 SAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKH 153
Query: 70 EEEEKEVARRWGVQKNRPAMNY 91
++E E A +P N
Sbjct: 154 KKEAAESASSSLSGSAKPERNV 175
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
L +++E+ E+E+ E ++ ++ E + + K++ E+ +EE +++ R
Sbjct: 361 LLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEEYQQRHATRA 416
Score = 29.4 bits (66), Expect = 2.1
Identities = 12/61 (19%), Positives = 28/61 (45%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
K + K + L + L E+E+ E E+ ++ E + + +++ +E+ +EE
Sbjct: 348 SKLQALAKVESRSLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQADEE 407
Query: 67 E 67
Sbjct: 408 Y 408
Score = 27.4 bits (61), Expect = 7.4
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 3 EEKVEKDKGREK-------ERAIELRIFLQTLDEKE-------EEEEEEEEEEEKKEEEE 48
E+VEK K + + E E R LQ L + E EE E+E+ + E+
Sbjct: 322 LEEVEKSKQKFEPLLAQYGESFQEWRSKLQALAKVESRSLLSVEERLPTIEKEDLELYEQ 381
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+++ E + + +++ E+ +E+ R
Sbjct: 382 RQQLWFFENRKLWQRKKKLREQADEEYQQR 411
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 29.9 bits (67), Expect = 1.5
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E++ +K++ KE+ ++ + + T + +E+ +E K +E K+ KEE ++ E
Sbjct: 23 EKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKSTKEESKQLLEV 82
Query: 63 EEEEEEEEEE-EKEVARRWGVQKNRPAMNYDKL 94
+ +EE ++E + E+ +QK P+ +
Sbjct: 83 LKTKEEHQKEIQYEI-----LQKTIPSFEPKES 110
Score = 28.8 bits (64), Expect = 3.1
Identities = 12/54 (22%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEK-EEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
D +E+++E+++++ + E +EK ++KEE + + +E+ +E ++A
Sbjct: 12 NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIA 65
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/57 (21%), Positives = 32/57 (56%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++ + L ++ E+ E E ++ EEE++ +E E+ E+ +++ +++E+E
Sbjct: 6 KIEKLAELLKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDEEE 62
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 29.8 bits (67), Expect = 1.5
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E +K + KGR K+ R L + +E +E ++ EE K +E E++E EEE
Sbjct: 230 PEGKKGKNKKGRGKKHNAFSRRGL-SDEEYDEYKKIREERGGKYSIQEYLEDRERYEEEL 288
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSR 96
E + E + EE+E R + R K R
Sbjct: 289 AERQATEADFCEEEEAKIRQRIFGLRKTRKQRKEER 324
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 29.7 bits (67), Expect = 1.5
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEE--EEEEEEEEEEKKEEEEKEEEKEEEEE 58
+ + + + R + R+ + L EK +E + + ++E K E EE
Sbjct: 244 EDLKLLLEAGERLCPLCLIKRLLPERLKEKLVLIDEVIKRSKRNREEPRLKYENFREELR 303
Query: 59 EKEEEEEEEEEEEEEKEVARR 79
E E+E E + +
Sbjct: 304 ELLEKEPEIVYLFIKAKKNPG 324
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 29.7 bits (67), Expect = 1.5
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
EK E + A+ ++TL E+ EEE + +K ++EKEE + E +E+ EEE
Sbjct: 11 EKYVDEEVKNALIGVKQMKTLMERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEE 70
Query: 67 EE 68
EE
Sbjct: 71 EE 72
Score = 28.9 bits (65), Expect = 2.5
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E EEE + E+ ++EKEE + E EE+ EEEEE
Sbjct: 33 ERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEE 72
Score = 28.1 bits (63), Expect = 4.4
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E EEE K E+ K+E+EE + E EE+ EEE+EV
Sbjct: 33 ERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEEV 73
>gnl|CDD|223642 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Transcription].
Length = 342
Score = 29.6 bits (67), Expect = 1.6
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
RE E + ++ + L + E+ + + + E + + E E
Sbjct: 26 REAEVELAKQLEDEQLLVELGEDLTDLKLGREPSERARRPAGRLSFYIRAIEAAPLLTPE 85
Query: 72 EEKEVARRW 80
EEK +ARR
Sbjct: 86 EEKALARRL 94
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion
and trafficking].
Length = 150
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EK++ E + +E+ E +++ EE+++ ++ +E+ E+EE K
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 28.5 bits (64), Expect = 1.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E + +EE E +K+ +E++K ++ KE+ E+EE +
Sbjct: 36 IEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 28.5 bits (64), Expect = 2.2
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
E+++ E + +EE E ++E EE+K+ ++ +E+ E++E+
Sbjct: 31 YEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 28.1 bits (63), Expect = 2.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E+K E + +EE E +KE EE+++ ++
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQK 66
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ D + + +EE E KE EE+K+ ++ +E+ E+EE +
Sbjct: 31 YEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 27.3 bits (61), Expect = 5.5
Identities = 7/45 (15%), Positives = 24/45 (53%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E+++ E + +EE + ++E EE+++ ++ +++ +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQE 74
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.0 bits (65), Expect = 1.6
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++E E++ +EE +E K+E KE +EE +E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 28.6 bits (64), Expect = 2.5
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
KEE E++ +E+ +E ++E +E +E E++E++ E+ EKE+A
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKE-EDQEKQNPVEDLEKEIA 49
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 27.7 bits (62), Expect = 1.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E K E E + +++E E E E EE+ + RR
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEECLMRR 58
Score = 27.3 bits (61), Expect = 2.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
+ E E + +E + E E E EEE
Sbjct: 26 SSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.9 bits (60), Expect = 2.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E + + E + +++E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.9 bits (60), Expect = 2.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ + + E + +E++ E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.6 bits (59), Expect = 3.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
E + E E + +E++ E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.2 bits (58), Expect = 4.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E + E E K +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.8 bits (57), Expect = 6.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E + + E K +E E E + E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.8 bits (57), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E + E + + +E E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.8 bits (57), Expect = 7.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
E + E E K +E+E E E E EE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEE 52
Score = 25.4 bits (56), Expect = 8.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E K E + + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 29.7 bits (66), Expect = 1.7
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ ++ KE +++EE+E + + KEEE ++E+E+E+ + + ++ +R
Sbjct: 1014 KHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKR 1072
Score = 29.7 bits (66), Expect = 1.8
Identities = 12/54 (22%), Positives = 31/54 (57%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ +++EE+E E ++ +EE+ +KE+E E++ + + +E K+ ++
Sbjct: 1022 VKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 28.9 bits (64), Expect = 3.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E EE +E E E+EE ++EE + E EE + E+K+V
Sbjct: 629 ENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDV 670
Score = 28.2 bits (62), Expect = 6.0
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EE E D E+E + L + E EE + EKK+ + EEK + EE+ +
Sbjct: 631 EESADEVDYETEREENARKKEEL-----RGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
Query: 62 EEEEEEEEEEEEKEV 76
E E E V
Sbjct: 686 INRSEFETMVPESRV 700
Score = 27.8 bits (61), Expect = 7.2
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 21 RIFLQTLDEKEEEEE-EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
RI L E E+ E ++ +E+ +++E++E E + KEEE ++E+E E++
Sbjct: 1002 RIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQR 1056
Score = 27.8 bits (61), Expect = 7.9
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E+E+ D E+ R + + + +E + E E EE +++EE E EE
Sbjct: 607 LEDEENSSDNEMEESRGSSVTAENE--ESADEVDYETEREENARKKEELRGNFELEERGD 664
Query: 61 EEEEEEEEEEEEEKEVARR 79
E+++ + EE++++ +
Sbjct: 665 PEKKDVDWYTEEKRKIEEQ 683
Score = 27.4 bits (60), Expect = 8.1
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE ++ D+ E + E+ E EE +E + E E+EE +KE
Sbjct: 592 EEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKE 651
Query: 62 EEE---EEEEEEEEEKEVARRWGVQKNR 86
E E EE + EK+ + +K +
Sbjct: 652 ELRGNFELEERGDPEKKDVDWYTEEKRK 679
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 29.6 bits (67), Expect = 1.7
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+LR+ LQ L + E E E E E + E + ++ E E E+
Sbjct: 314 QLRLRLQELATELEAEGEAEFESTEGETTLAPSILQSDDSESPIHETEDAP 364
>gnl|CDD|223170 COG0092, RpsC, Ribosomal protein S3 [Translation, ribosomal
structure and biogenesis].
Length = 233
Score = 29.2 bits (66), Expect = 1.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+++ I+ + + E +E E EE EE ++ K +EE +EE
Sbjct: 188 VKVWIYKGEVLPDKVEIKEPAEVEEPAEESREDRRKPQEERRREEA 233
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 29.6 bits (66), Expect = 1.7
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ-- 83
TL EK E + K +E + E+E E+ E + E E K R +
Sbjct: 430 TLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSAESRIENEVE 489
Query: 84 --KNRPAMNYDKLSRSLRYYYE 103
KL + YY +
Sbjct: 490 NINATNTSVLMKLKLMIVYYED 511
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 29.2 bits (66), Expect = 1.7
Identities = 27/54 (50%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEE-----EEKEEEKEEEEEEKEEEEE 65
AI LRI + L KEEEE E+EE EE ++E EE E KE E E EEE
Sbjct: 64 AILLRIKSRMLLPKEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEE 117
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 29.5 bits (66), Expect = 1.7
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
R +E R + + ++ EE+E+E + E K ++ E +EE E KE
Sbjct: 479 RPLERRRREREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELRAMAKE 538
Score = 27.5 bits (61), Expect = 6.7
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEK---EEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDK 93
E EEE K+ +EE+++E E E ++ E +EE A + K +P + K
Sbjct: 487 EREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELRAMAKEKP-EDVAK 545
Query: 94 LSRS 97
L R+
Sbjct: 546 LIRT 549
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 29.2 bits (66), Expect = 1.8
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE--EEEEEEEEEEEKEVARRW 80
+ + EEE+ ++ EE E EE + + E ++ +K+V RW
Sbjct: 235 EPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERW 287
Score = 28.4 bits (64), Expect = 3.1
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEE--------EKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ EEE+ ++ EE E K E ++ +++ +E EE K +A
Sbjct: 237 GKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKRLA 294
>gnl|CDD|221769 pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase.
Members of this family belong to the PD-(D/E)XK nuclease
superfamily. These proteins are transposase proteins.
Length = 229
Score = 29.1 bits (66), Expect = 1.8
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 18 IELRIFLQTLDEKEEEE-----------EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
IEL F + +E E + E ++ +E+ ++ E E+ EEE
Sbjct: 150 IELPKFNKNEEELETDTLDKWLYFLKNAESLKDIPLLEEDPIIKKAFEALEKFSMSEEER 209
Query: 67 EEEEEEEK 74
E EE EK
Sbjct: 210 EAYEEREK 217
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional.
Length = 903
Score = 29.5 bits (66), Expect = 1.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EL + ++ L++ +E EEK + + E E+E+ + + E +E E K
Sbjct: 753 ELNVLIKLLNKDYSSKETTRSVEEKGNAPDLDNEYEDEKLDNKNMRENNVDEVELKT 809
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
FL D+K E+ + E ++ E + E E +EE+++++++ + RR
Sbjct: 427 FLNCSDDKFEQRMSGDFIEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYRR 483
>gnl|CDD|235138 PRK03604, moaC, bifunctional molybdenum cofactor biosynthesis
protein MoaC/MogA; Provisional.
Length = 312
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 4/25 (16%)
Query: 209 EEVARRWGVQKNRPAMNYDKLSRSL 233
E R WG + AM LSR +
Sbjct: 249 AEALRSWGQGRTPTAM----LSRLV 269
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 29.4 bits (66), Expect = 1.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ E EE E + EE+EE+++E++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E EE + E EE+EE+++E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.8 bits (62), Expect = 5.4
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
E +E E + EE+E++++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|233331 TIGR01255, pyr_form_ly_1, formate acetyltransferase 1. Alternate
names: pyruvate formate-lyase; formate
C-acetyltransferase This enzyme converts formate +
acetyl-CoA into pyruvate + CoA. This model describes
formate acetyltransferase 1. More distantly related
putative formate acetyltransferases have also been
identified, including formate acetyltransferase 2 from
E. coli, which is excluded from this model [Energy
metabolism, Fermentation].
Length = 744
Score = 29.5 bits (66), Expect = 1.9
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 40 EEEKKEEEEKEEEKEEEE-EEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
+E+ KE + E+ EEE+ +EE E+ +E K +A +G+ +RPAMN
Sbjct: 184 KEKAKEWDALTEDNEEEQIRLREEINEQYRALQEVKNMAALYGLDISRPAMN 235
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 28.0 bits (62), Expect = 1.9
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EE +E ++E +EEEE +E+ EEEE E EEEE EEEEE E R
Sbjct: 39 NEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKR 86
Score = 27.6 bits (61), Expect = 2.6
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
E KD +KE E E EE +E + + EEE+E ++++EEEE E
Sbjct: 9 AELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEG 68
Query: 63 EEEEEEEEEEEKEVA 77
EEEE EEEEE +
Sbjct: 69 EEEEGEEEEETEGAT 83
Score = 26.8 bits (59), Expect = 4.3
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E VE+ + + A E ++E EEEEE +E EEEE E E+EE EEE+E E
Sbjct: 21 EVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
Query: 64 EEEEEEEEEEKE 75
+ E++E
Sbjct: 81 GATGKRAAEDEE 92
Score = 26.5 bits (58), Expect = 7.5
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
DE EEEEE +E++EE++ E E+EE +EEEE E + E+EE++ E ++
Sbjct: 49 DEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQ 100
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E+EKK+ EE + E + E E+ E ++ AR
Sbjct: 440 AIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARA 481
Score = 28.4 bits (64), Expect = 3.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ E+E+++ EE K E ++ E E+ +E
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREA 471
>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins.
This family of eukaryotic proteins includes
Saccharomyces cerevisiae Ydl063c and Chaetomium
thermophilum Syo1, which mediate the co-import of two
ribosomal proteins, Rpl5 and Rpl11 (which both interact
with 5S rRNA) into the nucleus. Import precedes their
association with rRNA and subsequent ribosome assembly
in the nucleolus. The primary structure of syo1 is a
mixture of Armadillo- (ARM, N-terminal part of syo1) and
HEAT-repeats (C-terminal part of syo1).
Length = 597
Score = 29.2 bits (66), Expect = 2.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
I L L E KE ++K++E E+E+ E+EEE+E++E E V
Sbjct: 281 ILLPILSAILSILALEILANICKELDKKDDEAMEDEQSDEDEEEDEDDEASETLV 335
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 28.6 bits (64), Expect = 2.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
FLQ L ++ ++E E+ + + + +K EE EKE E+ + E++
Sbjct: 88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 29.3 bits (67), Expect = 2.0
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KE A EL ++ E ++ +E+ EE +E EEE E +E +EE +E EE EE EEE
Sbjct: 39 KEYA-ELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEE 97
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease
activity) and DNA repair processes (long-patch base
excision repair) in eukaryotes and archaea. Interaction
between FEN1 and PCNA (Proliferating cell nuclear
antigen) is an essential prerequisite to FEN1's DNA
replication functionality and stimulates FEN1 nuclease
activity by 10-50 fold. FEN1 belongs to the
FEN1-EXO1-like family of structure-specific, 5'
nucleases. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain) of variable length (approximately 45 residues in
FEN1 PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Nucleases
within this group also have a carboxylate-rich active
site that is involved in binding essential divalent
metal ion cofactors (Mg2+/Mn2+). FEN1 has a C-terminal
extension containing residues forming the consensus
PIP-box - Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1
to PCNA.
Length = 261
Score = 29.0 bits (66), Expect = 2.0
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E K E EK E+ EE EEK EE +EE + EE ++ A+R
Sbjct: 86 ELKSGELEKRRERREEAEEKLEEAKEEGDAEEARKYAKR 124
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 28.6 bits (64), Expect = 2.1
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+++EE ++ E EK E++ +++ + EEEE
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEE 42
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 28.6 bits (64), Expect = 2.1
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D+ E + + + K + + +K +EE K ++ E E+ +KE +++
Sbjct: 139 DKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKK 190
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 29.3 bits (66), Expect = 2.1
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEE------EEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
I L TL + +E +EE+ KEE+K + E E+ E +KE
Sbjct: 205 IILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQK-GNDLSNELEDISLGPLEYDKE 263
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.2 bits (65), Expect = 2.1
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
D+ E+E+ ++++ E+ ++ E E EEEE E E +E+E+E+ K R+
Sbjct: 219 DDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRK 270
Score = 28.5 bits (63), Expect = 3.0
Identities = 20/79 (25%), Positives = 46/79 (58%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E+ + EK++ E+E + + T D ++E+ ++++ E+ ++ E + EEEE
Sbjct: 193 REKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESS 252
Query: 61 EEEEEEEEEEEEEKEVARR 79
E E +E+E+E+ + ++ +R
Sbjct: 253 ESESDEDEDEDNKGKIRKR 271
Score = 28.5 bits (63), Expect = 3.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
E E+ + E+E EE+EE + E E ++ E+E+ +K+ +W
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKW 234
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 29.4 bits (66), Expect = 2.1
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+R+ L + ++EEE EE E EK E + + +E ++ E +
Sbjct: 408 MVRLLLYPMVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
>gnl|CDD|133408 cd04781, HTH_MerR-like_sg6, Helix-Turn-Helix DNA binding domain of
putative transcription regulators from the MerR
superfamily. Putative helix-turn-helix (HTH) MerR-like
transcription regulators (subgroup 6) with at least two
conserved cysteines present in the C-terminal portion of
the protein. Based on sequence similarity, these
proteins are predicted to function as transcription
regulators that mediate responses to stress in
eubacteria. They belong to the MerR superfamily of
transcription regulators that promote transcription of
various stress regulons by reconfiguring the operator
sequence located between the -35 and -10 promoter
elements. A typical MerR regulator is comprised of two
distinct domains that harbor the regulatory
(effector-binding) site and the active (DNA-binding)
site. Their N-terminal domains are homologous and
contain a DNA-binding winged HTH motif, while the
C-terminal domains are often dissimilar and bind
specific coactivator molecules such as metal ions,
drugs, and organic substrates.
Length = 120
Score = 28.0 bits (63), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 13/45 (28%)
Query: 75 EVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA--GERYVY 117
EVAR+ G+ + +LRYY EKG++ + G R Y
Sbjct: 5 EVARQSGLP-----------ASTLRYYEEKGLIASIGRRGLRRQY 38
Score = 26.9 bits (60), Expect = 5.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 11/37 (29%)
Query: 210 EVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVA 246
EVAR+ G+ + +LRYY EKG++ +
Sbjct: 5 EVARQSGLP-----------ASTLRYYEEKGLIASIG 30
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 29.1 bits (66), Expect = 2.2
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
K EEE+ +EE++E + + + E+ EEE ++
Sbjct: 174 KLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
Score = 27.9 bits (63), Expect = 5.0
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
EK +EE EE + + + + + E+ E+E + EE ++++
Sbjct: 180 EKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQEDI 227
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 29.1 bits (66), Expect = 2.2
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
KE A EL ++ E ++ +E+ E+ +E EE+ E +E EEE +E E + EE EEE
Sbjct: 40 KEYA-ELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEE 98
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
++E E+ ++ + E K EK++ E + EEE E ++ E +
Sbjct: 75 LQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDGK 123
Score = 27.4 bits (61), Expect = 5.0
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
++EK + A + LQ ++ ++ E E K E++K E K+ EEE +
Sbjct: 56 EIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILR 115
Query: 65 EEEEEEEEEKEV 76
++ E+ + ++
Sbjct: 116 SKQAEDGKLVKI 127
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 28.2 bits (63), Expect = 2.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
E EEEEE+ E E +E+ + E ++ +E ++E +E+ +
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEK 98
Score = 27.8 bits (62), Expect = 2.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E EEEEEE + E +E+ E + +E ++E +E+ E
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASE 97
>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
Family 4; Alpha-glucosidases and alpha-galactosidases.
Glucosidases cleave glycosidic bonds to release glucose
from oligosaccharides. Alpha-glucosidases and
alpha-galactosidases release alpha-D-glucose and
alpha-D-galactose, respectively, via the hydrolysis of
alpha-glycopyranoside bonds. Some bacteria
simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by the GH4 glycoside hydrolases such as the
alpha-glucosidases. Other organsisms (such as archaea
and Thermotoga maritima) lack the PEP-PTS system, but
have several enzymes normally associated with the
PEP-PTS operon. Alpha-glucosidases and
alpha-galactosidases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 423
Score = 29.1 bits (66), Expect = 2.2
Identities = 10/52 (19%), Positives = 18/52 (34%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
K+ + EE+ E EE K E ++E+ + + E
Sbjct: 261 ETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEY 312
Score = 27.9 bits (63), Expect = 5.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
R++ + I F + +EE+ E EE+ + E +KEE + K E
Sbjct: 259 RKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEY 312
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 29.1 bits (66), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEK 53
+ L+E +EEE EE +K E EE +
Sbjct: 204 KDLEEDPGNDEEEAREEVEKLESGDEEAE 232
Score = 28.4 bits (64), Expect = 3.6
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+ E R E + E + ++ E++ +EEE +E E+ E +EE E
Sbjct: 175 LSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAEL 233
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein
is found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE----------------EEEEEEEEEEEEK 74
++EEE+E+E E++K+ ++ E +E ++ EE+E E +
Sbjct: 16 DDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAELRE 75
Query: 75 EVARRW 80
E+ +
Sbjct: 76 ELREEF 81
Score = 26.9 bits (60), Expect = 9.3
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 29/77 (37%)
Query: 28 DEKEEEEEEEEEEEEKKEEEE-----------------------------KEEEKEEEEE 58
+ +EEE+E+E E+EKK +E K E++E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 59 EKEEEEEEEEEEEEEKE 75
+E EE +++E KE
Sbjct: 74 REELREEFLKKQEAVKE 90
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 28.9 bits (65), Expect = 2.3
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
E G ++E E I + E E ++ EE ++ +E E EE ++ +E E
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPE 188
Query: 67 EEEEEEEKEVARR 79
+ +EV +
Sbjct: 189 QSTMSRPQEVKQS 201
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 29.2 bits (66), Expect = 2.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
F + +E +E + EE KKEEEE+E K+ +E E E+ ++E +
Sbjct: 317 EEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSM 372
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 29.1 bits (66), Expect = 2.3
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
E +++E E E ++E+ EEE+ EEE + E+ K E
Sbjct: 462 LRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRE 521
Query: 65 EEEEEEEEEKEVARRW 80
+E+ EE +V R W
Sbjct: 522 LAKEDPEEVAQVLRTW 537
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 27.8 bits (62), Expect = 2.3
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E +R +E R Q L E++EEEE + + E + E K +K E+ E ++ +E+EE+E+
Sbjct: 52 ELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQEQIP 111
Query: 73 E 73
E
Sbjct: 112 E 112
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 28.7 bits (64), Expect = 2.4
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 14 KERAIELRI-FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
KE+ EL I ++ DE EE E E+ ++ EK + EEE EKE+ E+ +E
Sbjct: 24 KEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPA 83
Score = 28.7 bits (64), Expect = 2.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 25 QTLDEKEE--------------EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
L+EK E E+ EE + KK ++E EE E E+ +E E+ +
Sbjct: 3 PYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVD 62
Query: 71 EEEKEV 76
E+E+
Sbjct: 63 SIEEEI 68
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 28.6 bits (64), Expect = 2.4
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 26 TLDEKEEEE----EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
T DE E E EE+ E+ E E E +E +EE E+ + EE+E E
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPITE 275
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 28.8 bits (65), Expect = 2.4
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E K E EK E+ EE EE+ E+ EE ++EE K+ ++R
Sbjct: 93 ELKSGELEKRRERREEAEEELEKAIEEGDDEEIKKQSKR 131
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 29.1 bits (65), Expect = 2.5
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E++R IE L + E++E + ++E+ +E E + EE E +
Sbjct: 167 ERDRLIEATRRL-----SVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKAL 221
Query: 73 EKEVARRWGVQKNRPAMNYDKLSRSLRYYY 102
+E + + + ++ + L R +R Y
Sbjct: 222 RREAFDAFMQIEPKQLISDEALYREMRLNY 251
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 29.0 bits (65), Expect = 2.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEK 74
E E ++E + E EEE + E E+K
Sbjct: 369 EGELKDERSDDESEEESDLESSEDK 393
Score = 27.9 bits (62), Expect = 6.2
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEE 51
R+ + + E ++E EEE + + E+K +
Sbjct: 365 RVIWEGELKDERSDDESEEESDLESSEDKND 395
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.6 bits (62), Expect = 2.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 54 EEEEEEKEEEEEEEEEE 70
++EEK+EE EEE ++
Sbjct: 85 AAKKEEKKEESEEESDD 101
Score = 27.2 bits (61), Expect = 3.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 44 KEEEEKEEEKEEEEEEKEE 62
+KEE+KEE EEE ++
Sbjct: 83 AAAAKKEEKKEESEEESDD 101
Score = 26.8 bits (60), Expect = 4.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 46 EEEKEEEKEEEEEEKEEE 63
K+EEK+EE EE+ ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.8 bits (60), Expect = 5.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 42 EKKEEEEKEEEKEEEEEE 59
++EEK+EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.8 bits (60), Expect = 5.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 56 EEEEKEEEEEEEEEEEEE 73
+KEE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.5 bits (59), Expect = 5.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 41 EEKKEEEEKEEEKEEEEE 58
K+EE+KEE +EE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.5 bits (59), Expect = 5.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 36 EEEEEEEKKEEEEKEEE 52
++EEKKEE E+E +
Sbjct: 84 AAAKKEEKKEESEEESD 100
Score = 26.5 bits (59), Expect = 5.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 52 EKEEEEEEKEEEEEEEEE 69
++EE+KEE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 26.1 bits (58), Expect = 7.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 50 EEEKEEEEEEKEEEEEE 66
+KEE++EE EEE ++
Sbjct: 85 AAKKEEKKEESEEESDD 101
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family
consists of several ATP synthase E chain sequences
which are components of the CF(0) subunit.
Length = 83
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+++EE+ E + +E+ E+ K ++K+ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 26.7 bits (59), Expect = 4.5
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
++L +KEE+ E E +E+ E+ + K+++ +++
Sbjct: 29 QRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 26.3 bits (58), Expect = 5.2
Identities = 7/38 (18%), Positives = 24/38 (63%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
++++++ E E +++ E+ K ++++ ++E K +A
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSLA 70
Score = 25.5 bits (56), Expect = 8.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+++EE+ + E +EK EK + K+++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 25.5 bits (56), Expect = 9.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+K+EE+ E E +EK E+ K ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 29.1 bits (66), Expect = 2.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E E +K EE ++E E+ + E +E EE + E E+
Sbjct: 118 EIAEREKAEEARQEAFEQLKNEIKEREETQIELEQ 152
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 29.0 bits (65), Expect = 2.5
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
DE+EEE+E+++++ E+E+++ EE E + +E+++E +K+
Sbjct: 139 DEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADLSKKDV 197
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 29.1 bits (66), Expect = 2.6
Identities = 8/46 (17%), Positives = 22/46 (47%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ + + +++ E E E+ E E E + +++++ + AR
Sbjct: 594 DGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDDAARP 639
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ ++EE+K KEE++ K E+E+ EEE
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 28.1 bits (63), Expect = 3.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ +KEE+K +EEK+ + E+E+ EEE
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 28.8 bits (65), Expect = 2.7
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
E +E+E EE K E E+++ E+ E EE R P
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPEP 308
Score = 28.0 bits (63), Expect = 6.0
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E +E++ EE + E ++E+ E+ E EE + EE+
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREER 300
Score = 27.6 bits (62), Expect = 8.0
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+++E EE + E E ++ E+ E EE + +EE +
Sbjct: 265 PKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 27.2 bits (61), Expect = 8.3
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
LRI ++ +E+E EE + E E+E+ E+ E EE + EE + E
Sbjct: 254 LRIEYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPEPGTFFP 313
Query: 80 WGVQKNRP 87
+
Sbjct: 314 YEPTPPHI 321
Score = 27.2 bits (61), Expect = 9.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E +EKE EE + E E+E+ E+ E+ ++ R A
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function
prediction only].
Length = 116
Score = 27.7 bits (62), Expect = 2.7
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
++EE EE +K E + + K EE+ E +EE+ +EEE +++ + R+
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQAILRQ 48
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription
factor TFIIE alpha. TFIIE is compiled of two subunits,
alpha and beta. This family of proteins are the C
terminal domain of the alpha subunit of the protein
which is the largest subunit and contains several
functional domains which are important for basal
transcription and cell growth. The C terminal end of
the protein binds directly to the amino-terminal PH
domain of p62/Tfb1 (of IIH) which is involved in the
recruitment of the general transcription factor IIH to
the transcription preinitiation complex. P53 competes
for the same binding site as TFIIE alpha which shows
their structural similarity. Like p53, TFIIE alpha
336-439 can activate transcription in vivo.
Length = 86
Score = 27.1 bits (60), Expect = 2.7
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E + E +++ E + +EEE+ E++E EE E+E VA R
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDEPTVMVAGR 48
>gnl|CDD|224581 COG1667, COG1667, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 254
Score = 28.7 bits (64), Expect = 2.7
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE------EEKEEEKEE 55
+E+ EK K+ + + E E EE + E EE E+ E +E E+
Sbjct: 97 DEDLFEKILELNKDECVLSVPITEEEVENEMEELKSSEREELLEKYGIRVPEIEEIERIL 156
Query: 56 EEEEKEEEEEEEEEEEEEKEVARRWGV 82
+E + EE EE +E+ ++ G+
Sbjct: 157 DEAVGSDYFSEEIEEPSREELLKKLGI 183
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A
peptide from the central, syntaxin binding domain of
synaphin competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal
exocytosis by promoting interaction between the
complementary syntaxin and synaptobrevin transmembrane
regions that reside in opposing membranes prior to
fusion.
Length = 139
Score = 27.9 bits (62), Expect = 2.8
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
Q D K +E+E +E EEE EE +E E +EE + + + EEE+EV R
Sbjct: 12 QLKDVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMR 65
Score = 26.8 bits (59), Expect = 6.5
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
EEE+ K + E+ER + + K++EE+EEE + +EEE + K++ EE
Sbjct: 47 EEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEEPQAAAEEEEGRLGRKKKTPEELA 106
Query: 62 EEEEEEEEEEEEK 74
E EE+EEEEEK
Sbjct: 107 AEAGEEDEEEEEK 119
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 28.7 bits (64), Expect = 2.8
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEE----EEEKKEEEEKEEEKEEEEEEK 60
K ++ +E+ER L+ +++ EE + E EEE K+E E ++ E
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANI 103
Query: 61 EEEEEEEEEEEEEKEV 76
++ + ++E EEEE E
Sbjct: 104 DDVDTDDENEEEEYEA 119
Score = 27.6 bits (61), Expect = 5.5
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ E E EEE E EEE+EE EEEEE + E+ R
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPR 36
Score = 27.6 bits (61), Expect = 6.6
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E E E EE++E EEEEEE EEEEE + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 27.2 bits (60), Expect = 7.4
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E E + EEE E +EEEEE +EEEE + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.9 bits (65), Expect = 2.8
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E K + E L+ + E E + K+ + E+ +E K+
Sbjct: 828 KNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKK 887
Query: 62 EEEEEEEEEEEE 73
EEE ++ EEE
Sbjct: 888 EEEFKQFAEEEG 899
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 29.1 bits (66), Expect = 2.8
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKE--EEKEEEEEEKEEEEEEEEEEEEEKEVA 77
L L + E E E + ++EKE E E E + + +++
Sbjct: 452 LAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQ 507
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 28.9 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
EK + E++ ++ K++E+KE+EKE ++++K+E E +
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKS 227
Score = 27.3 bits (60), Expect = 8.7
Identities = 15/62 (24%), Positives = 34/62 (54%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDK 93
E+ + EKK ++ K++EK+E+E+E+++++++E E + +A D+
Sbjct: 188 EKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADE 247
Query: 94 LS 95
S
Sbjct: 248 AS 249
>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. This family
aligns residues towards the N-terminus of several
proteins with multiple functions. The members of this
family all appear to possess 5'-3' exonuclease activity
EC:3.1.11.-. Thus, the aligned region may be necessary
for 5' to 3' exonuclease function. The family also
contains several Xrn1 and Xrn2 proteins. The 5'-3'
exoribonucleases Xrn1p and Xrn2p/Rat1p function in the
degradation and processing of several classes of RNA in
Saccharomyces cerevisiae. Xrn1p is the main enzyme
catalyzing cytoplasmic mRNA degradation in multiple
decay pathways, whereas Xrn2p/Rat1p functions in the
processing of rRNAs and small nucleolar RNAs (snoRNAs)
in the nucleus.
Length = 237
Score = 28.5 bits (64), Expect = 2.9
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY-DKLSRSLRYYY 102
K+ +EKE E EE EE E E + E+ E++ ++ P + +L+++LRYY
Sbjct: 105 KDAKEKEAEAEENREELETEGIKLPEKVEKE----KFDSNCITPGTPFMARLAKALRYYI 160
Query: 103 EKGI 106
+K +
Sbjct: 161 KKKL 164
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.9 bits (66), Expect = 3.0
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE---------------EEEEEEK 74
K + E+ E E KE +E+ + E E +E E E EE ++E++
Sbjct: 62 KRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDEDDNV 121
Query: 75 EVARRWG 81
EV RRWG
Sbjct: 122 EV-RRWG 127
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 28.3 bits (63), Expect = 3.0
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 24 LQTLDEKEE--EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
LQ+ EE EEE+E + E E E E + EE ++ + EV
Sbjct: 91 LQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEV 145
Score = 26.8 bits (59), Expect = 7.5
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ EE + EE+ E + +E E + E ++ EE
Sbjct: 93 SQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQD 140
Score = 26.8 bits (59), Expect = 9.5
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
RI L + EE + EEE + + E E E E ++ EE
Sbjct: 85 RIVESHLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSC 136
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.7 bits (65), Expect = 3.0
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+E +K EE ++ K EEEEE+EEEE E +E
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 28.5 bits (64), Expect = 3.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
EL L + K ++ +E +++K+E EE E E E+K + +EE
Sbjct: 210 ELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEI 258
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 27.7 bits (62), Expect = 3.1
Identities = 9/62 (14%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 28 DEKEEEEEEEEEEEE------------KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE E+E+E++ K + ++E+ E +++ + + + +E+++ +
Sbjct: 85 GDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSDADEDDDDD 144
Query: 76 VA 77
+
Sbjct: 145 IP 146
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 28.8 bits (64), Expect = 3.2
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 1/92 (1%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKE-EEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNR 86
EK+ E+ ++E KEE K K E K EEE E+E+ K K R
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
Query: 87 PAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK 118
A + +L +G + E+ K
Sbjct: 63 AAAAAKAKAAALAKQKREGTEEVTEEEKAKAK 94
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 28.7 bits (64), Expect = 3.2
Identities = 11/49 (22%), Positives = 32/49 (65%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
DE +++++ +E+ + E++ +K++++EE+E+ EE+ + + E+
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLEL 51
Score = 28.0 bits (62), Expect = 6.2
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
Q +++ + E++ KK+++++EEE+ EE+ + + E
Sbjct: 9 QQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLE 50
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for
centrosome separation and maintenance of spindle
bi-polarity. TPX2 is a microtubule-associated protein
that mediates the binding of the C-terminal domain of
Xklp2 to microtubules. It is phosphorylated during
mitosis in a microtubule-dependent way.
Length = 57
Score = 26.2 bits (58), Expect = 3.2
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+E E++ E ++K EEKE+ E ++EE E ++EEEE+ + +
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQ 45
Score = 26.2 bits (58), Expect = 3.4
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE 52
ERA + F + L+EKE+ E E+EE E +++EE+EE
Sbjct: 5 ERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 25.4 bits (56), Expect = 5.8
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+E E+ E ++K EE+EK E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 28.7 bits (65), Expect = 3.2
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 21/109 (19%)
Query: 30 KEEEEEEEEEEEEKK---------EEEEKEEEKEEEEEE-----KEEEEEEEEEEEEEK- 74
E E E+EEEE + E + EE E+ E ++E E
Sbjct: 140 PEVSEAEKEEEEIESYWYILTPDGELHDPEEFDFSGYEDLKALVDYEVGKKELVGGEPPH 199
Query: 75 -EVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTS 122
++ R + PA + + YY KG + + E YVY
Sbjct: 200 VKLMREKELADYEPASDVGHMR-----YYPKGRLIRDLLEDYVYNLVVE 243
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 27.5 bits (62), Expect = 3.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+E E E + E EE E EE + ++E E+ E + R
Sbjct: 78 DEAERPEDIDVERAEEALERAEERLAQAKDEREKARAEAALER 120
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 43 KKEEEE--KEEEKEEEEEEKEEEEEEEEEEEEEK 74
+KEE E K EKE E+ K+EEE E + ++ K
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
Score = 27.2 bits (61), Expect = 4.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E+EE E K+ E+E E+ ++EEE +E +
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 26.8 bits (60), Expect = 6.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
KK E+E+ E ++ E+E E+ ++EEE E K R+
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 28.1 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
D+ EE EEEEE+EE E E + ++ + E E E+
Sbjct: 14 DDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDAT 59
Score = 27.4 bits (61), Expect = 5.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+ ++ + E +++ EE EEE+E+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.0 bits (60), Expect = 7.0
Identities = 10/52 (19%), Positives = 30/52 (57%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+++ ++ + E ++++ +E EE+EE++E+ E + + ++ + E A
Sbjct: 1 MEDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESAS 52
Score = 27.0 bits (60), Expect = 7.7
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E + ++ + D+ EE EEEEE+EE+ + E + ++ K E E E+
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATS 60
Score = 26.6 bits (59), Expect = 8.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E ++++ EE EEEE+ EE+ + E + K+ + E E ++
Sbjct: 10 YESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDA 58
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 28.5 bits (64), Expect = 3.4
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
+++LD + EE + + +E +K+ ++ K E K+ ++E E +E E +E K+ AR +Q
Sbjct: 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR--AMQ 111
Query: 84 KNRPAMNY 91
N A +Y
Sbjct: 112 VNGTATSY 119
Score = 27.8 bits (62), Expect = 5.9
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
E E+ EE+K E E ++E + +E+
Sbjct: 203 AAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQA 245
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 28.4 bits (64), Expect = 3.4
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE-----EKEEEEEEEE 68
+ER +L ++ L+EK ++ E + EE + + EE EEE +E EK E+ E
Sbjct: 167 EERLKQLEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKERLEFLEKLLEDLERS 226
Query: 69 EEEEEKE 75
EE ++
Sbjct: 227 EESSDRS 233
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 27.9 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
KK++++K++E E EE+K++ EE +E++K V
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAV 117
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 28.6 bits (64), Expect = 3.5
Identities = 9/68 (13%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
++ +K K R I +D + ++E + +++ E+ + + + +++ +E+
Sbjct: 227 KQPKKQAKSSKRRTIAQ------IDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDED 280
Query: 64 EEEEEEEE 71
E+ + +
Sbjct: 281 GEDLFDTD 288
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 28.3 bits (63), Expect = 3.6
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE----EEEEEEEKEVARRWGVQKNRPA 88
E +E+ E K E K E KE E K E +E E+ +E E++ A +++ +
Sbjct: 21 EVKEQREMRIKVESSMKIEPKENEFLSKPEYDEHVKTPEQIKELEEKKAYEESLKQLQFE 80
Query: 89 MNYDKLSRSLRYYYEKGI 106
++ L Y I
Sbjct: 81 LDKYDLVLIQAYKTPTNI 98
>gnl|CDD|219996 pfam08738, Gon7, Gon7 family. In S. cerevisiae Gon7 is a member
of the KEOPS protein complex. A protein complex
proposed to be involved in transcription and promoting
telomere uncapping and telomere elongation.
Length = 97
Score = 27.0 bits (60), Expect = 3.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
ELR L TL + E E EE+KK+ K ++E E+++EE
Sbjct: 51 ELRASLTTLQDDINEFLTERMEEDKKKAAAKGRGEKEIEDKEEE 94
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 28.7 bits (64), Expect = 3.7
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
++ E+ E KKE K+ EK+ + E + + + EE+EE+ +A W
Sbjct: 115 DDLEKIESKKESINKKNEKKIKNEASLQVKTQREEKEEKDFIADCW 160
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EE + ++ + + KE EE E+ E +EK A
Sbjct: 29 EELHDLLDKVVSLLGPLADYTNNGQGMKEHEEAEDAEGTKEKPPA 73
Score = 28.1 bits (63), Expect = 5.3
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
EE + ++ + +E EE E+ E +E+ A ++G
Sbjct: 28 LEELHDLLDKVVSLLGPLADYTNNGQGMKEHEEAEDAEGTKEKPPAGAVKFG 79
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 28.7 bits (64), Expect = 3.8
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE----- 66
R R I+L++ Q L ++ +E ++ + +E +KE + E EEE + E+
Sbjct: 414 RLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQ 473
Query: 67 --EEEEEEEK---EVARRWGVQKNRPAMNYDKL 94
+ E E+ K E ARR G + Y K+
Sbjct: 474 TIKAELEQAKIAIEQARRVGDLARMSELQYGKI 506
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 3.9
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
++E +E + ++E E EE+ +E++ EE++E E+E E +
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIK 45
Score = 27.9 bits (62), Expect = 4.4
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L +KE E EE+ ++++ EEK+E E+E E KE+ E + +E E+
Sbjct: 12 LSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 28.6 bits (64), Expect = 3.9
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
L L + EE + +E E + +E E++ E+E+E+++E+E
Sbjct: 870 LNDLTDLEEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.9 bits (62), Expect = 5.9
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEEE 72
E E++ +E+E+++E+E+E+E+E+E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.5 bits (61), Expect = 8.5
Identities = 9/23 (39%), Positives = 20/23 (86%)
Query: 51 EEKEEEEEEKEEEEEEEEEEEEE 73
E+ + +E+E ++E+E+E+E+E+E
Sbjct: 888 EDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 28.6 bits (65), Expect = 4.0
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
E+++ E E +E + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 27.8 bits (63), Expect = 5.6
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+++K+ E E +E + EE E
Sbjct: 528 TRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 27.8 bits (63), Expect = 5.6
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+ E+++ E E KE + EE E
Sbjct: 528 TRIEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 27.8 bits (63), Expect = 6.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+K+ E E KE + EE
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEP 563
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 26.7 bits (59), Expect = 4.1
Identities = 6/35 (17%), Positives = 29/35 (82%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
E EE E+++++E++ ++++ +++ +++++++++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 26.3 bits (58), Expect = 5.4
Identities = 7/33 (21%), Positives = 28/33 (84%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
EE E+++++E+ ++++K+++ ++++++ E++E
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 26.3 bits (58), Expect = 5.5
Identities = 7/35 (20%), Positives = 28/35 (80%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
E EE E+ ++E+ +++ ++++++ ++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 25.9 bits (57), Expect = 6.1
Identities = 6/35 (17%), Positives = 31/35 (88%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E EE + ++++++++ ++++++K++++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 25.5 bits (56), Expect = 8.5
Identities = 7/35 (20%), Positives = 28/35 (80%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
E EE E +++E +++ ++++++ +++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|224705 COG1792, MreC, Cell shape-determining protein [Cell envelope
biogenesis, outer membrane].
Length = 284
Score = 28.1 bits (63), Expect = 4.1
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 43/127 (33%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE-------EEEEEEEEEKE 75
L+ L K ++ E EE KKE E E+ EE E +EE + +E + +
Sbjct: 61 VLEFL--KSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPI 118
Query: 76 VAR-------------------RWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYV 116
AR G++K P + E G++ KV V
Sbjct: 119 AARVISRSPDPWSQTIVIDKGSNDGIKKGMPVVA------------EGGLVGKVVE---V 163
Query: 117 YKFCTSV 123
K + V
Sbjct: 164 SKNTSRV 170
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.4 bits (64), Expect = 4.1
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
EK E + + EE E++ EE+ E +E +E+++E E E EEE E+
Sbjct: 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396
Score = 28.0 bits (63), Expect = 5.8
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEE--EEKEEEKEEEEEEKEEEEEEEEEEEEE 73
L F + L + ++E+E E+ +E+ E E E E E + ++ E+ +
Sbjct: 539 LAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQAR 594
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 28.6 bits (64), Expect = 4.2
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 45 EEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYD 92
E++ E+ ++++ + + EEEE RR ++ ++D
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRRLIRTPPRVDSFD 80
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 27.3 bits (59), Expect = 4.2
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
K+E E+E++ E+ + E+E+K E+ E E+E+K E+ E E+E+E E
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFE 103
Score = 26.1 bits (56), Expect = 9.2
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKE-EEEKEEEKEEEEEEKEEEEEEEEEEEE 72
++T E ++E E+E++ EK E E+EK+ EK E E+EK+ E+ E E+E+E
Sbjct: 52 MKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 28.2 bits (63), Expect = 4.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
EEEEE+ + ++ +E E + E E EKE EE +E K
Sbjct: 446 VAEEEEEDIDLDELLQELSEIDAELAELEKELEEILKELLLNLK 489
Score = 27.0 bits (60), Expect = 9.9
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+ + IE +L+E E + EEEE++ + +E +E E + E E E+
Sbjct: 416 REFKEIEGFSKSVSLEEIRENDYNLNPGRYVAEEEEEDIDLDELLQELSEIDAELAELEK 475
Query: 73 EKE 75
E E
Sbjct: 476 ELE 478
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus
in conjunction with the polytopic membrane protein
EsaA, YukC (pfam10140) and YukAB, which is a
membrane-bound ATPase containing Ftsk/SpoIIIE domains
(pfam01580) called EssC in S. aureus and Snm1/Snm2 in
Mycobacterium tuberculosis. Proteins homologous to
EssA, YukC, EsaA and YukD seem absent from
mycobacteria.
Length = 145
Score = 27.5 bits (61), Expect = 4.3
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 5 KVEKDKGREKERAIELRI-FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+ D E + ++ ++ LQ D+++ E++ E E +K E E EEE +K+
Sbjct: 2 RSAADSYLEDDGKMQFKVDRLQKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNA 61
Query: 64 EEEEEEE 70
E++E E+
Sbjct: 62 EQKEMED 68
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 28.2 bits (64), Expect = 4.4
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEE------EKKEEEEKEEE-KEEE 56
E++ ++ G+EK + L K +E E + EK+E + KEE
Sbjct: 211 EELAEEAGKEK-WEFVAPEVDEELKAKVKELAYEAGLKEAYQITEKQERYAALDAIKEEV 269
Query: 57 EEEKEEEEEEEEEEEEEKEVA 77
E EEEEEEEE + EKE+
Sbjct: 270 LEALAEEEEEEEEADREKEIK 290
Score = 27.5 bits (62), Expect = 7.7
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E ++ K K +E L+ Q EK+E + +E+ E EEE+EEEE ++E
Sbjct: 228 EVDEELKAKVKELAYEAGLKEAYQI-TEKQERYAALDAIKEEVLEALAEEEEEEEEADRE 286
Query: 62 EEEEEEEEEEEEKEVARR 79
+E +E ++ E+K V R
Sbjct: 287 KEIKEAFKDLEKKIVRER 304
>gnl|CDD|220223 pfam09405, Btz, CASC3/Barentsz eIF4AIII binding. This domain is
found on CASC3 (cancer susceptibility candidate gene 3
protein) which is also known as Barentsz (Btz). CASC3
is a component of the EJC (exon junction complex) which
is a complex that is involved in post-transcriptional
regulation of mRNA in metazoa. The complex is formed by
the association of four proteins (eIF4AIII, Barentsz,
Mago, and Y14), mRNA, and ATP. This domain wraps around
eIF4AIII and stacks against the 5' nucleotide.
Length = 116
Score = 27.0 bits (60), Expect = 4.5
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+ + E E K+++E K E E+ ++E +E
Sbjct: 3 ESERQSGRTPSAEPTEPKEDKERKRREHEKYDDEDDEN 40
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 28.1 bits (63), Expect = 4.5
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
D EEE E E E E E EK+ E + + + A
Sbjct: 10 PSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNADSA 61
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 27.4 bits (61), Expect = 4.6
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
++EE+ EE+ ++E + E EE + + E + R V R A
Sbjct: 15 PLDDEEDYYEEDPRQE---PRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNMPRVAAQ 71
Query: 91 YD 92
Sbjct: 72 DS 73
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 28.0 bits (63), Expect = 4.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
K E E+ E EE EEK EE E+ + EE ++ A+R
Sbjct: 87 KAETLEERREIREEAEEKWEEALEKGDLEEARKYAQR 123
Score = 27.6 bits (62), Expect = 5.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 49 KEEEKEEEEEEKEEEEEEEEE--EEEEKEVARRWGVQKNR 86
K E EE E +EE EE+ EE E+ + E AR++ + +R
Sbjct: 87 KAETLEERREIREEAEEKWEEALEKGDLEEARKYAQRSSR 126
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 28.3 bits (63), Expect = 4.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
+ +++E EE+ E+E +E + K R
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSKFSWR 88
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 28.1 bits (63), Expect = 4.7
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
+ +E + E+ + + +E+ +E +E E+ + E +E KEE EE +E+ EE E
Sbjct: 36 RKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELE 95
Query: 68 EE 69
E+
Sbjct: 96 EQ 97
Score = 27.0 bits (60), Expect = 10.0
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKE--EEEKEEEKEEEEEEKEEEE 64
++DK R+ + E + +D E ++ +E+ +E KE EE E +E +EE EE E
Sbjct: 31 DQDKLRKLSK--EYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELE 88
Query: 65 EEEEEEEEE 73
E+ EE EE+
Sbjct: 89 EKIEELEEQ 97
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 28.1 bits (63), Expect = 4.9
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
D E E +E E K+ +K+++K++++++K E + +
Sbjct: 36 DDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVW 85
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 26.8 bits (60), Expect = 4.9
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E E +E+E E EEE++++E+EEEE E+
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYEL 45
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 26.4 bits (59), Expect = 4.9
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
EE EE EE+++K+EEEKE KE + E+ E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor
Elf1; Provisional.
Length = 99
Score = 26.6 bits (59), Expect = 5.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKE 75
E K E +E K EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
Score = 26.2 bits (58), Expect = 8.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEE 71
E K E KE + EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase.
Length = 530
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E EE E+ ++ K+ K E+ E K E+E++
Sbjct: 3 QEAVEESGEKISKKAAKKAAAKAEKLRREATAKAAAASLEDEDDP 47
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 28.1 bits (62), Expect = 5.1
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
L+ + + E EEE+ KEE ++EE E + +E+ K ++
Sbjct: 356 LEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQEQSHKGLSELI 409
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 27.1 bits (59), Expect = 5.1
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
K E E +EE++E K E E KEE+KE + E + +EE++E E K
Sbjct: 94 KGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 27.2 bits (61), Expect = 5.1
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK--EVAR 78
E EEE+ KE EE+ E E E EE +E+E+ ++ E E+AR
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLKKVEALLREIAR 131
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 26.8 bits (59), Expect = 5.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEE 71
E E+ EE KEEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 26.8 bits (59), Expect = 5.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 39 EEEEKKEEEEKEEEKEEEEEE 59
E +K EE KEEE+EEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDED 99
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 27.0 bits (60), Expect = 5.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
E E++ E ++ + +E +KEE E +EE EE + EE ++
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRK 127
Score = 26.6 bits (59), Expect = 8.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+K + EE ++EE E+ EE +E + EE KE
Sbjct: 96 QKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 27.8 bits (62), Expect = 5.4
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + E +E + L + E + E ++ E+E+ E
Sbjct: 335 DTNDSSPLTDSKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTE 394
Query: 62 EEEEEEEEEEE-EKEVARR 79
++ + ++EEE E RR
Sbjct: 395 RDDSDSDDEEETPAERRRR 413
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 27.0 bits (60), Expect = 5.5
Identities = 15/57 (26%), Positives = 30/57 (52%)
Query: 21 RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
R ++E+E EE EE+ + K + +E E+EE+E+ E ++++ + A
Sbjct: 56 RNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKKSKGGYNA 112
Score = 26.2 bits (58), Expect = 8.4
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 39 EEEEKKEEEEKEEEKEEEEEE-----KEEEEEEEEEEEEEKEVARR 79
K +EE++ EE+ EE K + EE E+EEEE++E+A++
Sbjct: 58 RRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQK 103
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 27.9 bits (63), Expect = 5.5
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 47 EEKEEEKEEEEEEKEEEEEEEEE--EEEEKEVARRWGVQKNR 86
E K EE EE E +EE EE+ EE EE + E AR++ + +R
Sbjct: 38 ELKAEEIEERREVREEAEEKYEEAKEEGDLEEARKYAQRSSR 79
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 27.1 bits (60), Expect = 5.5
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 13 EKERAIELRIF---LQTLDEKEEEEEEEEEEEEKKEE-EEKEEEKEEEEEEKEEEEEEEE 68
E+E+ R+F L TL + +EE +E+++ E E+K EE+E++E E+ +E+ E
Sbjct: 3 EEEKKRNRRMFGLLLGTLQKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKREL 62
Query: 69 EEEEEKE 75
EE ++
Sbjct: 63 FEERRRK 69
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 28.1 bits (62), Expect = 5.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ EEE+ E+K + K ++ +E+ E++ E E + EE E
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESE 166
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 27.7 bits (62), Expect = 5.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWG 81
FL+ +E ++ + E E+ + E E +++EE E E EE EE R W
Sbjct: 108 FLERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELISGRLWD 166
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 27.3 bits (61), Expect = 5.8
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
E EE+ EE E E++ E EK E EE E++ EE E++E++ E
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48
Score = 26.9 bits (60), Expect = 7.5
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEE-EEEEKEEEEEEEEEEEEEKEVARR 79
+E EE+ EE + EEE E EK E EE +++ EE E++E++ E+ ++
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQ 52
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 27.9 bits (62), Expect = 5.8
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEE-------EEEEEEKKEEEEK----- 49
E+E+++ DK + E +I L E +EEE E+ EE+ + E K
Sbjct: 382 EKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKY 441
Query: 50 --EEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E EE ++EKE+E+E E E+ E+
Sbjct: 442 FPFIEFEEVKKEKEKEKERPEFVEKVLEL 470
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 27.5 bits (61), Expect = 5.8
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+E+EE+ E + K ++EEE +E++EEE EE+E+
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDED 230
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 27.6 bits (62), Expect = 5.8
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEE-------------E 47
EE+ EK++ ++ERA E + L+++ E+EE E+E EK+ E
Sbjct: 239 REEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIE 298
Query: 48 EKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EKEE + E EE+ EE E EEE E++
Sbjct: 299 EKEERRAAEREEELEEGERLREEEAERQ 326
Score = 27.2 bits (61), Expect = 9.9
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + EK + + +E+ E RI +E+ + EEEE E K++EE +E +E+ +E
Sbjct: 23 DAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEE 82
Query: 62 EEEEEEEEEEE 72
E+ +EE EE
Sbjct: 83 REKRRQEEYEE 93
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 26.1 bits (58), Expect = 5.9
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
DE+E +E+ EE E+ ++E E + +E+EE +E+++ EE ++ EE+
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 25.7 bits (57), Expect = 8.0
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+EEE K++ EE E+ +EE E E++E EE +E+ + E R+
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRK 82
Score = 25.7 bits (57), Expect = 9.8
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
K+EEE +E+ EE +K EE E E++E EE KE+ + EE
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEE 79
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups.
Length = 346
Score = 27.6 bits (61), Expect = 6.0
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 52 EKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E E E+EEEE K RR
Sbjct: 85 PAPARSAESETASLLEKEEEEPKLAPRR 112
>gnl|CDD|218618 pfam05508, Ran-binding, RanGTP-binding protein. The small Ras-like
GTPase Ran plays an essential role in the transport of
macromolecules in and out of the nucleus and has been
implicated in spindle and nuclear envelope formation
during mitosis in higher eukaryotes. The S. cerevisiae
ORF YGL164c encoding a novel RanGTP-binding protein,
termed Yrb30p was identified. The protein competes with
yeast RanBP1 (Yrb1p) for binding to the GTP-bound form
of yeast Ran (Gsp1p) and is, like Yrb1p, able to form
trimeric complexes with RanGTP and some of the
karyopherins.
Length = 302
Score = 27.7 bits (62), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
LR + DE+ +E EE + E EKE K+ E K+
Sbjct: 86 TKSLRREIDEFDERLDEAASSEELSSRTSENEKESIKKIERYMKD 130
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37 pfam03234.
Length = 89
Score = 26.2 bits (58), Expect = 6.0
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ E E++ +E E+E +EE E+E+ EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 25.8 bits (57), Expect = 8.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ E EKE +E E+E EEE E+EE E+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 25.8 bits (57), Expect = 8.4
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ + E+E KE E+E EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 27.2 bits (61), Expect = 6.1
Identities = 19/103 (18%), Positives = 57/103 (55%), Gaps = 5/103 (4%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+ K +K+ E + L +KE+E ++EE++ +K+ EE ++ +++E +++
Sbjct: 28 SESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQK 87
Query: 64 EEEEEEEEEEKEVARRWGVQKNRPAMN--YDKLSRSLRYYYEK 104
++E +++++ + + QK + + YDK+ ++++ ++
Sbjct: 88 QQELQQKQQAAQQELQ---QKQQELLQPIYDKIDKAIKEVAKE 127
Score = 26.8 bits (60), Expect = 7.3
Identities = 14/74 (18%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+E+E + +K+ EL+ Q L ++ EE + +++E ++K++E +++++
Sbjct: 40 LEKEFKKLQAELQKKEK-ELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAA 98
Query: 61 EEEEEEEEEEEEEK 74
++E +++++E +
Sbjct: 99 QQELQQKQQELLQP 112
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain
is found associated with pfam06512, pfam00520. This
domain has a conserved ADD sequence motif.
Length = 222
Score = 27.4 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
E KE ++ +KEE EE + EKE
Sbjct: 9 ESAKERRNRNDKNKKEEHSIGSEEGDSEKEP 39
Score = 27.1 bits (60), Expect = 8.6
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 40 EEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLR 99
E K+ ++ K+EE EE + E+E + E R+ R + SL
Sbjct: 9 ESAKERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRFLLRKTRKVSQSLLSLP 68
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 27.7 bits (62), Expect = 6.1
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 18/104 (17%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE--------------EEEEEEKE 75
K +E+ E E KE +++ EKE E +E + + + +E
Sbjct: 67 KIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVSNDEANNA 126
Query: 76 VARRWGVQKNRPAM-NYDKLSRSLRYY-YEKGIMQKVAGERYVY 117
V R WG ++ P + N+ L L E+G VAG R Y
Sbjct: 127 VVRTWGEKRQEPKLKNHVDLVELLGIVDTERG--ADVAGGRGYY 168
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.8 bits (62), Expect = 6.1
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E+ ++ ++ + +L L+ + + E ++KK EE + E + E
Sbjct: 183 EQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI-- 240
Query: 62 EEEEEEEEEEEEKEVARRWGVQKNRPAM 89
E + E A + R A
Sbjct: 241 ASAEAAAAKAREAAAAAEAAAARARAAE 268
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein
(putative transposase or invertase). Several lines of
evidence suggest that members of this family (loaded as
a fragment mode model to find part-length matches) are
associated with transposition, inversion, or
recombination. Members are found in small numbers of
genomes, but in large copy numbers in many of those
species, including over 30 full length and fragmentary
members in Treponema denticola. The strongest
similarities are usually within rather than between
species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane
proteins. This family includes members of the putative
transposase family pfam04754.
Length = 270
Score = 27.4 bits (61), Expect = 6.1
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 17 AIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+++ + +E + +E E ++ E+ + EEE +EE EE E + E
Sbjct: 183 FLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKLET 242
Query: 77 ARR 79
A++
Sbjct: 243 AKK 245
Score = 27.0 bits (60), Expect = 9.3
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE------------ 61
+ L +L L K+ + + ++ +EE K KE
Sbjct: 158 ERLLDVLDRWLLLLKGKDNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELELYEQREKYMT 217
Query: 62 -EEEEEEEEEEEEKEVARRWGVQKNRPAM 89
EEE +EE E + +
Sbjct: 218 DAISAEEEGKEEGIEEGILEAKLETAKKL 246
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of
70kDa MW N terminal. This domain is found in
eukaryotes. This domain is about 90 amino acids in
length. This domain is found associated with pfam00076.
This domain is part of U1 snRNP, which is the pre-mRNA
binding protein of the penta-snRNP spliceosome complex.
It extends over a distance of 180 A from its RNA
binding domain, wraps around the core domain of U1
snRNP consisting of the seven Sm proteins and finally
contacts U1-C, which is crucial for 5'-splice-site
recognition.
Length = 94
Score = 26.5 bits (59), Expect = 6.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
++ ++E + E E++E E+ EK+E+ E++ EEE
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEE 84
>gnl|CDD|222259 pfam13608, Potyvirid-P3, Protein P3 of Potyviral polyprotein. This
is the P3 protein section of the Potyviridae
polyproteins. The function is not known except that the
protein is essential to viral survival.
Length = 445
Score = 27.9 bits (63), Expect = 6.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE--EEEEEEEKEVARR 79
K E EE+EE+EEK+ + K E + EEE E EE+ E E A
Sbjct: 276 KREAAEEKEEKEEKEIRKLYLYSKLEGKLPTEEEFLEYIEEKNPELLETAEE 327
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 27.4 bits (61), Expect = 6.3
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQ 83
+ +++ ++ + +E+EE E+ EEE+E KEE+ ++EE+E+++A+ Q
Sbjct: 70 VDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQ 129
Query: 84 K 84
+
Sbjct: 130 E 130
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This
is a family that is found predominantly at the
C-terminus of Kelch-containing proteins. However, the
exact function of this region is not known.
Length = 99
Score = 26.5 bits (59), Expect = 6.4
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE E +EE E++EEE+ EE +E++ RR
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGRR 98
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 27.6 bits (62), Expect = 6.5
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE----------EEEEE----EEEEEKE 75
K E++ EE E KE +EK +E E +E E E E ++E++
Sbjct: 64 KRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDNV 123
Query: 76 VARRWGVQKNR 86
RRWG
Sbjct: 124 EVRRWGEPPVF 134
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 27.8 bits (62), Expect = 6.5
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEE-EEEEKEEEEE 65
+ E E A E T DE E ++ + E E + EE E
Sbjct: 338 GEIDADELEAAFE-GGSEVTTDEGESASASLADKPKLGELEAFDRIARARGEESSSERAR 396
Query: 66 EEEEEEEEKEVARRWGVQKN 85
E E +A+R
Sbjct: 397 ALELALEGLYLAKRVDRVVG 416
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 27.0 bits (60), Expect = 6.6
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEE--------EEKKEEEEKEEE 52
+ +K+E+ KG EKE A E I Q LD + E E + E +EKKE E+KE
Sbjct: 104 DQTKKLEERKGLEKEIA-EKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEIA 162
Query: 53 KEEEEEEKEEEEEEEEEEEEEKEVARRW 80
+ + E K ++E + E E + A W
Sbjct: 163 RLKSEASKIKQELVDAELEFQTTAAAPW 190
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 27.7 bits (62), Expect = 6.8
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 19/86 (22%)
Query: 8 KDKGREKERAIELRIFLQT-LDEKEEE----EEEEEEEEEKKEEEEKE------------ 50
KDKG KE++I I + L E+E E E E EE+KK +EE E
Sbjct: 480 KDKGTGKEQSI--TITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQA 537
Query: 51 EEKEEEEEEKEEEEEEEEEEEEEKEV 76
E+ +E +K EE+E+ E+ E+
Sbjct: 538 EKTLKEAGDKLPAEEKEKIEKAVAEL 563
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 27.6 bits (62), Expect = 6.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK 53
+LQ + EE EEEE E +EE +
Sbjct: 268 NWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|224796 COG1884, Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit
[Lipid metabolism].
Length = 548
Score = 27.7 bits (62), Expect = 6.8
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 33 EEEEEEEEEEKKEEEEK----EEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
E + +E E E EE EE E + + E E+++AR V+ R
Sbjct: 437 AESAARRQARIEEGERVIVGVNEYPEEGPEEPVEILKVDPEAVRERQIARLKKVRAERDE 496
Query: 89 MNYDKLSRSLR 99
+ +LR
Sbjct: 497 EAVEAALAALR 507
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 26.9 bits (60), Expect = 7.0
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E +E+ ++E E +E ++K EEK+ ++EEK
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEK 82
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 27.5 bits (61), Expect = 7.0
Identities = 14/78 (17%), Positives = 38/78 (48%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
ME +++++ + ++ + FL+ + + EEEE+EE ++ +++ +
Sbjct: 122 MEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNE 181
Query: 61 EEEEEEEEEEEEEKEVAR 78
E E ++ E ++E+
Sbjct: 182 ELEYQQILITERDEEIKN 199
Score = 27.1 bits (60), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
EEEE+EE ++ +++ EE + ++ E +EE K +AR
Sbjct: 155 LEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLAR 202
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 27.2 bits (60), Expect = 7.1
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 9 DKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
D + KE A K +E + E E K + K E EE E E++E
Sbjct: 141 DVVKAKEEAKAAA--KAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 27.9 bits (62), Expect = 7.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
R L L+ + + E ++ E KEEE E+ + ++E EE
Sbjct: 743 SRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
>gnl|CDD|233941 TIGR02585, cas_Cst2_DevR, CRISPR-associated protein Cas7/Cst2/DevR,
subtype I-B/TNEAP. CRISPR is a term for Clustered
Regularly Interspaced Short Palidromic Repeats. A number
of protein families appear only in association with
these repeats and are designated Cas (CRISPR associated)
proteins. This clade is a member of the DevR family
(TIGR01875) and includes the DevR protein of Myxococcus
xanthus, a protein whose expression appears to be
regulated through a number of means, including both
location and autorepression; DevR mutants are incapable
of fruiting body development [Mobile and
extrachromosomal element functions, Other].
Length = 310
Score = 27.4 bits (61), Expect = 7.3
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 10 KGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+G + L+ EK E+E + EE EEE E + + E
Sbjct: 243 EGEVIIDVELIVTALEDFSEKVEDEVHIGLLKGF--FEENEEEAIELKPDGGVESIIVIF 300
Query: 70 EEEEKEV 76
++ +K V
Sbjct: 301 DKVKKAV 307
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 27.6 bits (62), Expect = 7.3
Identities = 13/72 (18%), Positives = 30/72 (41%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
K++ E +++E E E +E+++E E + ++ +E+ E +
Sbjct: 153 TLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQ 212
Query: 72 EEKEVARRWGVQ 83
E K+ + Q
Sbjct: 213 ERKQKRKEITDQ 224
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 27.5 bits (62), Expect = 7.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ E EE E +++ + E + + E E E+ E E
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERE 37
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 27.9 bits (62), Expect = 7.6
Identities = 14/78 (17%), Positives = 26/78 (33%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E E +++ R L L + E + ++ +E E + E +
Sbjct: 291 ELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA 350
Query: 62 EEEEEEEEEEEEKEVARR 79
+ + E E E RR
Sbjct: 351 DARQAIREAESRLEEERR 368
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 27.4 bits (62), Expect = 7.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ +E E E + E E E +EE ++
Sbjct: 299 KRQEAAEAEAEAAEAEAAAEPEEESWDD 326
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 27.2 bits (60), Expect = 7.6
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEE 71
EEEKE++K +EEKE +++E + E
Sbjct: 94 EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|217451 pfam03249, TSA, Type specific antigen. There are several antigenic
variants in Rickettsia tsutsugamushi, and a
type-specific antigen (TSA) of 56-kilodaltons located on
the rickettsial surface is responsible for the
variation. TSA proteins are probably integral membrane
proteins.
Length = 502
Score = 27.5 bits (61), Expect = 7.6
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+R ++ ++ L ++EE+ + + K+++ E+ +E + KE E
Sbjct: 354 QRHAGIKKAMEKLAAQQEEDAGNQGGGDCKKKQGASEKSKEGGKGKETE 402
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 27.5 bits (61), Expect = 7.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
KE + E E++ ++K + + EK E E+ ++ + E EE+E
Sbjct: 362 KEAQAEIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPEERE 407
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 27.5 bits (62), Expect = 7.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEE 67
LR + L+E + E E E EE E E ++E E+ E +++
Sbjct: 325 LRALAELLEETKAEAEAAEAEE---LPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
Length = 815
Score = 27.5 bits (61), Expect = 7.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+K E +E E E+ KK ++EK+++ K E+ +E EE
Sbjct: 24 QKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSAEDAVKEFEE 66
>gnl|CDD|153087 cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase
catalyzes a key step in anaerobic glycolysis, the
conversion of pyruvate and CoenzymeA to formate and
acetylCoA. The PFL mechanism involves an unusual radical
cleavage of pyruvate in which two cysteines and one
glycine form radicals that are required for catalysis.
PFL has a ten-stranded alpha/beta barrel domain that is
structurally similar to those of all three
ribonucleotide reductase (RNR) classes as well as
benzylsuccinate synthase and B12-independent glycerol
dehydratase.
Length = 738
Score = 27.3 bits (61), Expect = 8.0
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 41 EEKKEEEEKEEEKEEEEEE---KEEEEEEEEEEEEEKEVARRWGVQKNRPAMN 90
EEKK++ + E ++ +EE E+ + +E K++A +G+ +RPA N
Sbjct: 185 EEKKKDLDNLGGDEMTDDTIRLREEVAEQIKALKELKQMAASYGLDISRPATN 237
>gnl|CDD|235937 PRK07111, PRK07111, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 735
Score = 27.6 bits (62), Expect = 8.0
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ E+ L L EE +E+E EE++ ++ +E+ +E E+E
Sbjct: 238 RRHRKEILEKLLELGVGEEVDEKESLNEEEELLLLLLALDFNIAKKAQEKADELAEKETR 297
Query: 74 KEV 76
K
Sbjct: 298 KRT 300
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 27.3 bits (61), Expect = 8.0
Identities = 28/143 (19%), Positives = 60/143 (41%), Gaps = 23/143 (16%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE---------------- 68
+ + + + +++++ EE +K+ +E KEE E K E E ++
Sbjct: 58 KQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVG 117
Query: 69 EEEEEKEVARRWGVQKN---RPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY--KFCTSV 123
++EE+ +RWG +P +++ + +++ + KV G R+ Y +
Sbjct: 118 KDEEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAV--KVTGSRFYYLKNDGAKL 175
Query: 124 TNGLIDIRFYRSLKPNFTDFYPP 146
LI+ K + + YPP
Sbjct: 176 ERALINFMLDLLEKNGYQEIYPP 198
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 27.3 bits (60), Expect = 8.0
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 27 LDEKEEEEEEEEEE---EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVAR 78
L + E EE +EE E E+ EE ++ E E KE A+
Sbjct: 357 LLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAK 411
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 27.3 bits (61), Expect = 8.2
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
KE EE EE+ E+ E+ E+EEE E EEE
Sbjct: 211 KEAEEIEEQLEKLAEQLEKEEERVEREEEPP 241
Score = 26.9 bits (60), Expect = 8.2
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
++ E+E EE EE+ E+ ++ EKEEE E+EEE
Sbjct: 207 DKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 25.9 bits (57), Expect = 8.2
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+++E++ + + KE + K+ + E E+ + +++K+
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 27.0 bits (60), Expect = 8.2
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE--EEEKEVARRWGVQKNR 86
+KE + +E + +++ K E + K E E +KE+ ++ E EK++ RR +
Sbjct: 64 QKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRR---EAEE 120
Query: 87 PAMNYDKLSRSLRYYYEKG 105
+K+ R++ EKG
Sbjct: 121 EQKLLEKIQRAIESVAEKG 139
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 26.7 bits (59), Expect = 8.2
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 25 QTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+T + E + E++ ++KK E++KE +K+++E++K+++ E
Sbjct: 129 ETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the
Pfam FliH model pfam02108, but is closely related to
the sequences identified by that model. Sequences
identified by this model are observed in flagellar
operons in an analogous position relative to other
flagellar operon genes.
Length = 255
Score = 27.1 bits (60), Expect = 8.3
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 5 KVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
K K +ER I Q D E E+E +EE+E ++ EK E + + E+ E +
Sbjct: 6 KSTKSVIPAQERGI--IPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQ 63
Query: 65 EEEEEEEEEKE 75
E+ E+E
Sbjct: 64 AAAIREQIEQE 74
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 27.4 bits (61), Expect = 8.3
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
EEE +EE EE + + + + ++ E ++ E E
Sbjct: 185 EEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPE 229
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 26.9 bits (60), Expect = 8.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 36 EEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E+ + ++ EE + E K EEEE + EE + + ++A +
Sbjct: 25 IEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEK 68
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 26.9 bits (60), Expect = 8.5
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E E+E EE ++ E E+ K+E E+ EE + E EEE E
Sbjct: 56 AQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERI 103
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 27.5 bits (62), Expect = 8.5
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 11/57 (19%)
Query: 12 REKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
RE+ +AI ++E E++++++E +E EK E+ + +E KE+ E+E +
Sbjct: 232 REQLKAI-----------QKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELK 277
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 26.4 bits (59), Expect = 8.5
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
F+ +D E + +EE +K+++E+ +EE+E++ E++
Sbjct: 86 WFITYIDRSPEALKRQEELRKKEKQEKTDEEREQKLLEEQ 125
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A;
Provisional.
Length = 170
Score = 26.6 bits (59), Expect = 8.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEE 46
F + L + EE+E + +E EEK+E
Sbjct: 131 FEECLRKFEEDEAKAKEVEEKREA 154
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37.
Length = 93
Score = 25.8 bits (57), Expect = 8.8
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E+E + +E +E+ E +EE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 25.8 bits (57), Expect = 8.8
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE 59
+ E+E E +E +E+ + EEE E+E EEEE++
Sbjct: 62 NAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 26.4 bits (59), Expect = 8.8
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQK 84
L KE + +EE ++ + ++K + K++ + EK+ EE + E E A++ GV+
Sbjct: 57 ALAGKELKLTDEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGEAFLAENAKKEGVKT 115
>gnl|CDD|153040 pfam12606, RELT, Tumour necrosis factor receptor superfamily
member 19. This family of proteins is found in
bacteria and eukaryotes. Proteins in this family are
typically between 49 and 288 amino acids in length.
There are two completely conserved residues (K and Y)
that may be functionally important. The members of
tumor necrosis factor receptor (TNFR) superfamily have
been designated as the "guardians of the immune system"
due to their roles in immune cell proliferation,
differentiation, activation, and death (apoptosis). The
messenger RNA of RELT is especially abundant in
hematologic tissues such as spleen, lymph node, and
peripheral blood leukocytes as well as in leukemias and
lymphomas. RELT is able to activate the NF-kappaB
pathway and selectively binds tumor necrosis factor
receptor-associated factor 1.
Length = 50
Score = 24.9 bits (55), Expect = 8.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 29 EKEEEEEEEEEEEEKKE 45
+ E+E EE++EEEK+E
Sbjct: 34 DPLEDEPEEKKEEEKEE 50
>gnl|CDD|218186 pfam04636, PA26, PA26 p53-induced protein (sestrin). PA26 is a
p53-inducible protein. Its function is unknown. It has
similarity to pfam04636 in its N-terminus.
Length = 450
Score = 27.4 bits (61), Expect = 8.9
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEE--EEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY 91
E ++ +EE+ ++E +EE E+E+KE E + +E P Y
Sbjct: 234 ERMKKLQEERDDDEASQEEMTTRFEKEKKESLLVESSADIQESVPPCDVSRYVEDPTFGY 293
Query: 92 DKLSRS 97
+R
Sbjct: 294 QDFARR 299
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 27.2 bits (61), Expect = 8.9
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 17/64 (26%)
Query: 26 TLDEKEEEEEEEEEEEEKK-----------------EEEEKEEEKEEEEEEKEEEEEEEE 68
TL E+E EE E + + + E EEE E E+ +
Sbjct: 535 TLAEQEAAAREEREAAAEADPLVAAVLAAFPGAKIVDVRDLAPEAAEEEPAAEAEDPDAL 594
Query: 69 EEEE 72
+++
Sbjct: 595 PDDD 598
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 27.5 bits (62), Expect = 8.9
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 16 RAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
R I LR F +D+++ EE +EE +E EE EK E+ E E E E
Sbjct: 638 RFIMLRGFTTGIDDEDIPEEAKEEIDEIIEEAEKRVEELIEAYENGELE 686
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 26.1 bits (58), Expect = 9.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
F++ L E + ++E+ EE E + E+KE EE + E+ + + E
Sbjct: 70 FMEGLLEAIDYIKKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 27.1 bits (61), Expect = 9.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 7 EKDKGREKERAIELRIFLQT---LDEKEEEEEEEEEEEEKKEEEEKEEE 52
E+++ R+K+ + LR +L+ DE++EE EEE E E E +
Sbjct: 265 EEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALA 313
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 26.3 bits (58), Expect = 9.2
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEE---------KEEEEEEKEEEEEEEEEE 70
+R + L K +E+E E+E E++E EK+ + E++ ++EE+EE+
Sbjct: 30 IRPYFIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEED 89
Query: 71 EEEKEVARRWG 81
+WG
Sbjct: 90 FATPSAVPQWG 100
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 27.0 bits (60), Expect = 9.2
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 19 ELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEE-----KEEEEEEEEEEEEE 73
+ + F T E ++EE+ + + E+ E EEE K E+EE+ E +
Sbjct: 87 QQQTFQPTPVETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYLRERQR 146
Query: 74 KEVARRWGVQKNRPAMN 90
+ +AR +Q N A +
Sbjct: 147 QRMAR---LQANAAAYD 160
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 27.2 bits (60), Expect = 9.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
LR+ LQ ++EK + E +E + + EE +E E ++ + E
Sbjct: 400 LRLLLQRVNEKTQSLRERNQELQAEVEERQEAEAHLKKTQGE 441
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22
proteins [Transport and binding proteins, Amino acids,
peptides and amines].
Length = 145
Score = 26.5 bits (58), Expect = 9.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
L E E+E ++ E++ E EE +E+ + + E + + E EEE
Sbjct: 4 LTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 27.3 bits (61), Expect = 9.4
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 7 EKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK---------EEEE 57
EKD+ + +L+ L ++ E + E EEE + E K EE
Sbjct: 410 EKDRQKAAIEE-DLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEEL 468
Query: 58 EEKEEEEEEEEEEEEEKEVAR 78
E+ E +E E+ +EE+E A
Sbjct: 469 EQLEINDEALEKAQEEQEQAE 489
>gnl|CDD|130181 TIGR01111, mtrA, N5-methyltetrahydromethanopterin:coenzyme M
methyltransferase subunit A. This model describes
N5-methyltetrahydromethanopterin: coenzyme M
methyltransferase subunit A in methanogenic archaea.
This methyltranferase is a membrane-associated enzyme
complex that uses methyl-transfer reaction to drive
sodium-ion pump. Archaea have evolved energy-yielding
pathways marked by one-carbon biochemistry featuring
novel cofactors and enzymes. This transferase (encoded
by subunit A) is involved in the transfer of 'methyl'
group from N5-methyltetrahydromethanopterin to coenzyme
M. In an accompanying reaction, methane is produced by
two-electron reduction of methyl-coenzyme M by another
enzyme, methyl-coenzyme M reductase [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 238
Score = 27.1 bits (60), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 44 KEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
KE K+ +E+ E EEE EEEE EV
Sbjct: 149 KECASKDPGAFDEDPMIIELEEEGGEEEEGGEVK 182
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 26.9 bits (60), Expect = 9.7
Identities = 16/73 (21%), Positives = 39/73 (53%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
+ + EK E E+ + L+ L +E E +++ + +EE E+ K+ +++ E+
Sbjct: 288 KNEFEKYDKEEDEKPLFLKWKLPISIVRETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEK 347
Query: 63 EEEEEEEEEEEKE 75
E +++ + ++EK
Sbjct: 348 EIDKDAKIKDEKV 360
>gnl|CDD|240597 cd12933, eIF3G, eIF3G domain found in eukaryotic translation
initiation factor 3 subunit G (eIF-3G) and similar
proteins. eIF-3G, also termed eIF-3 subunit 4, or
eIF-3-delta, or eIF3-p42, or eIF3-p44, is the
RNA-binding subunit of eIF3. eIF3 is a large
multi-subunit complex that plays a central role in the
initiation of translation by binding to the 40 S
ribosomal subunit and promoting the binding of
methionyl-tRNAi and mRNA. eIF-3G binds 18 S rRNA and
beta-globin mRNA, and therefore appears to be a
nonspecific RNA-binding protein. Besides, eIF-3G is one
of the cytosolic targets; it interacts with mature
apoptosis-inducing factor (AIF). This family also
includes yeast eIF3-p33, a homolog of vertebrate
eIF-3G; it plays an important role in the initiation
phase of protein synthesis in yeast. It binds both mRNA
and rRNA fragments due to an RNA recognition motif near
its C-terminus.
Length = 114
Score = 26.1 bits (58), Expect = 9.7
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 22 IFLQTLDEKEEEEEEEEEEEEKKEEEEK 49
+FLQ + KEE EEEEEE ++KK++ +K
Sbjct: 67 VFLQLIRNKEELEEEEEEAKKKKKKGKK 94
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 27.2 bits (61), Expect = 9.9
Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+EEEK+EK+ ++ +L L + + + ++E E +KK +E+ E EEEE++
Sbjct: 434 LEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDERRTEIVEEEEDE 493
Query: 61 EEEEEEEEEEE 71
E+E+ EE+
Sbjct: 494 IEDEDLIAEED 504
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.130 0.372
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,402,165
Number of extensions: 1400618
Number of successful extensions: 42592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19535
Number of HSP's successfully gapped: 4798
Length of query: 246
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 152
Effective length of database: 6,768,326
Effective search space: 1028785552
Effective search space used: 1028785552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.0 bits)