RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13885
(246 letters)
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 118 bits (298), Expect = 4e-35
Identities = 49/76 (64%), Positives = 59/76 (77%)
Query: 170 PRRGSLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKL 229
P G +QLWQFL+ LL D NASCI W G EFK+ +P+EVARRWG +K++P MNYDKL
Sbjct: 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKL 60
Query: 230 SRSLRYYYEKGIMQKV 245
SR+LRYYY+K IM KV
Sbjct: 61 SRALRYYYDKNIMTKV 76
Score = 78.4 bits (193), Expect = 2e-19
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
EVARRWG +K++P MNYDKLSR+LRYYY+K IM KV G+RY YKF
Sbjct: 40 DEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYKF 85
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 120 bits (303), Expect = 4e-35
Identities = 42/72 (58%), Positives = 54/72 (75%)
Query: 174 SLQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSL 233
++ LWQFL+ LL P N I WT +FKL++ EEVAR WG++KN+P MNYDKLSR+L
Sbjct: 3 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRAL 62
Query: 234 RYYYEKGIMQKV 245
RYYY K I++KV
Sbjct: 63 RYYYVKNIIKKV 74
Score = 80.0 bits (197), Expect = 2e-19
Identities = 31/46 (67%), Positives = 41/46 (89%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
+EVAR WG++KN+P MNYDKLSR+LRYYY K I++KV G+++VYKF
Sbjct: 38 EEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFVYKF 83
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 119 bits (299), Expect = 1e-34
Identities = 49/106 (46%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 146 PQTDYSKRSDKQNCWPYDTPPPAT------PRRGSLQLWQFLVALLDDPNNASCIVWTGR 199
P+ + + D P G +QLWQFL+ LL D + S I WTG
Sbjct: 5 PKGTFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGD 64
Query: 200 GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV 245
G EFKL +P+EVARRWG +KN+P MNY+KLSR LRYYY+K I+ K
Sbjct: 65 GWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKT 110
Score = 76.0 bits (187), Expect = 4e-18
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
EVARRWG +KN+P MNY+KLSR LRYYY+K I+ K AG+RYVY+F
Sbjct: 74 DEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 119
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 109 bits (273), Expect = 3e-31
Identities = 40/72 (55%), Positives = 53/72 (73%)
Query: 175 LQLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLR 234
+QLWQFL+ LL D + CI W G EFKL +PE VA++WG +KN+P MNY+KLSR+LR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 235 YYYEKGIMQKVA 246
YYY+ ++ KV
Sbjct: 61 YYYDGDMICKVQ 72
Score = 74.9 bits (184), Expect = 4e-18
Identities = 27/46 (58%), Positives = 39/46 (84%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKF 119
+ VA++WG +KN+P MNY+KLSR+LRYYY+ ++ KV G+R+VYKF
Sbjct: 35 ELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF 80
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 106 bits (266), Expect = 2e-30
Identities = 44/73 (60%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 175 LQLWQFLVALLDDPNNASCIVWTGR-GMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSL 233
+ LWQFL+ LL + N I WT R G EFKLV+ EEVAR WG++KN+ MNYDKLSR+L
Sbjct: 1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60
Query: 234 RYYYEKGIMQKVA 246
RYYY+K I++KV+
Sbjct: 61 RYYYDKNIIRKVS 73
Score = 77.5 bits (191), Expect = 3e-19
Identities = 30/49 (61%), Positives = 43/49 (87%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFCTS 122
+EVAR WG++KN+ MNYDKLSR+LRYYY+K I++KV+G+++VYKF +
Sbjct: 36 EEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVSY 84
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 104 bits (261), Expect = 1e-29
Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 174 SLQLWQFLVALLDDP-NNASCIVWTGRGM-EFKLVEPEEVARRWGVQKNRPAMNYDKLSR 231
+ LWQFL LL P + I W + FK+ + +VAR WG++KNRPAMNYDKLSR
Sbjct: 2 PIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSR 61
Query: 232 SLRYYYEKGIMQKV 245
S+R YY+KGI++K
Sbjct: 62 SIRQYYKKGIIRKP 75
Score = 76.4 bits (188), Expect = 7e-19
Identities = 32/61 (52%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 61 EEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKV-AGERYVYKF 119
+E+ + E+ +VAR WG++KNRPAMNYDKLSRS+R YY+KGI++K +R VY+F
Sbjct: 26 LNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDISQRLVYQF 85
Query: 120 C 120
Sbjct: 86 V 86
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 103 bits (258), Expect = 3e-29
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 175 LQLWQFLVALLDDPNNASCIVWTGRG---MEFKLVEPEEVARRWGVQK-NRPAMNYDKLS 230
++L+QFL+ LL + I W + +F E +A RWG+QK NR M Y+K++
Sbjct: 2 IRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMA 61
Query: 231 RSLRYYYEKGIMQKVA 246
R+LR Y + G ++KV
Sbjct: 62 RALRNYGKTGEVKKVK 77
Score = 70.2 bits (172), Expect = 2e-16
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 59 EKEEEEEEEEEEEEEKEVARRWGVQK-NRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVY 117
+++ + + ++ +A RWG+QK NR M Y+K++R+LR Y + G ++KV + Y
Sbjct: 24 VDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVKK-KLTY 82
Query: 118 KF 119
+F
Sbjct: 83 QF 84
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 102 bits (255), Expect = 1e-28
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 174 SLQLWQFLVALLDDPN-NASCIVWTGRG-MEFKLVEPEEVARRWGVQKNRPAMNYDKLSR 231
S LW+F+ LL P N + W R F++V+ E +A+ WG +K M Y+KLSR
Sbjct: 1 SSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSR 60
Query: 232 SLRYYYEKGIMQKV 245
+LRYYY+ GI+++V
Sbjct: 61 ALRYYYKTGILERV 74
Score = 72.2 bits (177), Expect = 3e-17
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 74 KEVARRWGVQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFC 120
+ +A+ WG +K M Y+KLSR+LRYYY+ GI+++V R VYKF
Sbjct: 38 EALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV-DRRLVYKFG 83
>g1b35.1 b.121.4.1 (D:,C:) Insect picorna-like virus coat proteins
{Cricket paralysis virus [TaxId: 12136]}
Length = 339
Score = 33.8 bits (77), Expect = 0.013
Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 5/70 (7%)
Query: 141 TDFYPPQTDYSKRSDKQNCWPYDTPPPATPRRGSLQLWQF--LVALLDDPNNASCIVWTG 198
+ S K N D G +++ LVA + + I
Sbjct: 240 RPWLYCIRPESSWLSKDN---TDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVN 296
Query: 199 RGMEFKLVEP 208
G + + P
Sbjct: 297 GGPDLEFAGP 306
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 33.1 bits (75), Expect = 0.026
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+E+ + E+ + ++ E E E +EEEK + + EEE+ +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 30.0 bits (67), Expect = 0.24
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ E+ + +E E E E +E+E+ + + EEE+ +
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 29.6 bits (66), Expect = 0.36
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKK--------------------EEEEKEEEK 53
KE+ + L+ L E E+E + E E E K + + ++ K
Sbjct: 24 KEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAK 83
Query: 54 EEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+E E E E +EEE+ + K P
Sbjct: 84 GQEIVESLNETELLVDEEEKAQNDSEEEQVKGIP 117
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
melanogaster [TaxId: 7227]}
Length = 106
Score = 31.4 bits (71), Expect = 0.029
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 176 QLWQFLVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRY 235
+LW+ L+DD + I WT G F + + A+ + N N R L
Sbjct: 10 KLWR----LVDDADTNRLICWTKDGQSFVIQNQAQFAKEL-LPLNYKHNNMASFIRQLNM 64
Query: 236 Y 236
Y
Sbjct: 65 Y 65
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 32.3 bits (73), Expect = 0.047
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 14 KERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ R E+R ++ + + + E + + E E E E+ E EE+
Sbjct: 319 QHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDI 378
Query: 74 KEVARRW 80
E+ RW
Sbjct: 379 AEIVSRW 385
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 32.2 bits (72), Expect = 0.049
Identities = 10/69 (14%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+VE ++ R + + +D EE+ E +++ + +E+E+E++ +
Sbjct: 37 NRVEAEEARLSD------LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGD 90
Query: 64 EEEEEEEEE 72
++ +++
Sbjct: 91 DDSADDDNS 99
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 31.6 bits (71), Expect = 0.075
Identities = 12/78 (15%), Positives = 34/78 (43%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + + + + ++ + Q ++ E+ E + + KE+E K +E+E+
Sbjct: 218 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 277
Query: 61 EEEEEEEEEEEEEKEVAR 78
+E ++E + E+
Sbjct: 278 LKEGFQKESRIMKNEIQD 295
Score = 31.3 bits (70), Expect = 0.090
Identities = 12/79 (15%), Positives = 33/79 (41%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++ E + E + ++ + +E ++ E+ + + + +E+E K
Sbjct: 211 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 270
Query: 61 EEEEEEEEEEEEEKEVARR 79
+E+E+ +E +KE
Sbjct: 271 LQEQEQLLKEGFQKESRIM 289
Score = 30.9 bits (69), Expect = 0.13
Identities = 14/78 (17%), Positives = 32/78 (41%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E E + A L + ++ E++E +E K+ E+ E ++ + +E+
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 263
Query: 61 EEEEEEEEEEEEEKEVAR 78
E + +E+E+
Sbjct: 264 ERTLALKLQEQEQLLKEG 281
Score = 29.3 bits (65), Expect = 0.35
Identities = 14/79 (17%), Positives = 35/79 (44%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E + E +R E + + +E ++ E+ E + + KE+E+ + +
Sbjct: 213 AESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
Query: 61 EEEEEEEEEEEEEKEVARR 79
E+E+ +E ++E + +
Sbjct: 273 EQEQLLKEGFQKESRIMKN 291
Score = 29.3 bits (65), Expect = 0.37
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ EK+ E+ +A + + L E + + E+ E++E+ +E ++ E+ E ++
Sbjct: 197 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 256
Query: 61 EEEEEEEEEEEEEKEVARR 79
+ +E+E K +
Sbjct: 257 VQLLKEQERTLALKLQEQE 275
Score = 28.9 bits (64), Expect = 0.48
Identities = 10/79 (12%), Positives = 31/79 (39%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E K + + ++ Q +E ++ E+ E + +E++ +
Sbjct: 212 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 271
Query: 61 EEEEEEEEEEEEEKEVARR 79
+E+E+ +E +++ +
Sbjct: 272 QEQEQLLKEGFQKESRIMK 290
Score = 28.6 bits (63), Expect = 0.62
Identities = 10/74 (13%), Positives = 35/74 (47%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
M+ + + + +E+ L+ + ++ + +E+E + +E+E+ +E +++
Sbjct: 226 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 285
Query: 61 EEEEEEEEEEEEEK 74
+ E ++ + K
Sbjct: 286 SRIMKNEIQDLQTK 299
Score = 28.6 bits (63), Expect = 0.66
Identities = 12/74 (16%), Positives = 35/74 (47%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
E ++ + +KER+ + + T + + + +E+E + +E+E+ +E ++
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 284
Query: 62 EEEEEEEEEEEEKE 75
E + E ++ +
Sbjct: 285 ESRIMKNEIQDLQT 298
Score = 25.9 bits (56), Expect = 4.5
Identities = 11/78 (14%), Positives = 32/78 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + + E+ E+ + + + + E + K E+ +++E+ +E K+
Sbjct: 188 MTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 247
Query: 62 EEEEEEEEEEEEKEVARR 79
E+ E + + + R
Sbjct: 248 LTEKMENDRVQLLKEQER 265
Score = 25.9 bits (56), Expect = 4.9
Identities = 11/79 (13%), Positives = 32/79 (40%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
E + + E I ++ + + + + E +++ E+ E+KE +E
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244
Query: 61 EEEEEEEEEEEEEKEVARR 79
++ E+ E + + + +
Sbjct: 245 LKQLTEKMENDRVQLLKEQ 263
Score = 25.1 bits (54), Expect = 7.7
Identities = 19/100 (19%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE-EEKEEEEEE 59
+ + +EKE +E + E + + E+ E++E+ +E ++ E
Sbjct: 191 AILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 250
Query: 60 KEEEEEEEEEEEEEKEVARRWGVQKNRPAMNYDKLSRSLR 99
K E + + +E+E+ +A + Q+ + K SR ++
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 290
Score = 25.1 bits (54), Expect = 9.8
Identities = 11/79 (13%), Positives = 29/79 (36%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
K ++ + + + E E + E + K E + + ++ E+++
Sbjct: 179 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 238
Query: 61 EEEEEEEEEEEEEKEVARR 79
+E ++ E+ E R
Sbjct: 239 RSYQEHLKQLTEKMENDRV 257
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 31.7 bits (71), Expect = 0.091
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 18 IELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ +RI+ T + ++ ++++E+E + E K K+ + + E +E + A
Sbjct: 699 LGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
Query: 78 R 78
R
Sbjct: 759 R 759
Score = 28.6 bits (63), Expect = 0.86
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE--EEEEEEEEEEEKEVARR 79
KE ++ ++++EK+ E E + ++ + E +E +++ R
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
Score = 28.3 bits (62), Expect = 1.1
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEK 53
+K+ K K +E+ EL L+ + + + E +E +++ E
Sbjct: 709 ERYQKLLKQK---QEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 29.4 bits (66), Expect = 0.12
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ + + + + EE+++ +E E EEE +EKE +
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
Score = 27.5 bits (61), Expect = 0.57
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEE--EEEEEEKE 75
K E + K + EE+++ +E E EEE +EKE
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKE 94
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 30.8 bits (69), Expect = 0.14
Identities = 4/79 (5%), Positives = 19/79 (24%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + A ++ + + E + + ++++ +
Sbjct: 199 DQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQL 258
Query: 61 EEEEEEEEEEEEEKEVARR 79
++ E R
Sbjct: 259 RQQTFTAPGEAIRAASLDR 277
Score = 26.9 bits (59), Expect = 2.0
Identities = 3/49 (6%), Positives = 13/49 (26%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVA 77
+ E + + ++++ + ++ E A
Sbjct: 231 YQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDRGA 279
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 29.9 bits (67), Expect = 0.16
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 3 EEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEE 62
++K+E + R K + EL L E E E ++ EE + +E+ ++ E +E
Sbjct: 48 QKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKE 107
Query: 63 EEEEEEEEEEEK 74
E E+
Sbjct: 108 NREAHLAAMLER 119
Score = 26.4 bits (58), Expect = 1.9
Identities = 14/74 (18%), Positives = 31/74 (41%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ + + + E+E + + +E+ ++ E K+ E E +EK+
Sbjct: 65 LLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKD 124
Query: 62 EEEEEEEEEEEEKE 75
+ EE + +E KE
Sbjct: 125 KHAEEVRKNKELKE 138
Score = 25.6 bits (56), Expect = 3.6
Identities = 16/78 (20%), Positives = 25/78 (32%)
Query: 2 EEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKE 61
+ E K E + L E+ E E E +K EE K +E+ +
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Query: 62 EEEEEEEEEEEEKEVARR 79
+ E +E E
Sbjct: 101 KMESNKENREAHLAAMLE 118
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 30.0 bits (67), Expect = 0.22
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ E+ +EE EEK E+ + EE+ + EE + ++E
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETP 257
Score = 29.6 bits (66), Expect = 0.26
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 28 DEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
++ +EE EE+ EK + EE+ E EE + ++E +
Sbjct: 215 EKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPD 258
Score = 29.6 bits (66), Expect = 0.31
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEV 76
+ I +Q EK +EE EE+ +K + EE E EE + ++E + E
Sbjct: 206 VTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEA 262
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.7 bits (67), Expect = 0.23
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ ++E++K+ +E+++ + E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.7 bits (67), Expect = 0.25
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ +KE++K+ +EK++ E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1pvc3_ b.121.4.1 (3:) Poliovirus coat proteins {Poliovirus type 3,
strain Sabin [TaxId: 12086]}
Length = 235
Score = 29.8 bits (67), Expect = 0.26
Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 118 KFCTSVTNGLIDIRFYRSLKPNFTDFYPPQTDYSKRSDKQNCWPYDTPPPATPRRGSLQL 177
K T+ + D+ + Y + T + G + +
Sbjct: 146 KEAMLGTHVIWDLG--LQSSCTMVVPWISNVTYRQ-----------TTQDSFTEGGYISM 192
Query: 178 WQF--LVALLDDPNNASCIVWTGRGMEFKL 205
+ +V L P + S + + +F +
Sbjct: 193 FYQTRIVVPLSTPKSMSMLGFVSACNDFSV 222
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 29.7 bits (67), Expect = 0.27
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ + E K+ +EEK + +EE E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 29.3 bits (66), Expect = 0.38
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 42 EKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+ + E K+ KEE+ + KEE E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 27.0 bits (60), Expect = 1.8
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
+ + E +K+ +EEK + +EE E+ +E
Sbjct: 110 KAQTEARKQM--SKEEKLKIKEENEKLLKE 137
Score = 25.4 bits (56), Expect = 5.8
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 33 EEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
+ + E ++ KEE+ K +E+ E+ ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.4 bits (56), Expect = 6.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 27 LDEKEEEEEEEEEEEEKKEEEEKEEEKEE 55
+ E ++ +EE+ K +EE E+ +E
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.1 bits (55), Expect = 8.5
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEE 56
+ + E ++ +EEK + +E+ E+ +E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 28.8 bits (64), Expect = 0.30
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 46 EEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
+E E + E +EEEEE + +E+ V RW
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERW 77
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 28.7 bits (64), Expect = 0.34
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
E++ LQ + K + + + EEE +++E + +++ E ++
Sbjct: 74 SYISEVKEVLQ--ECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQ 131
Query: 75 E 75
E
Sbjct: 132 E 132
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.6 bits (66), Expect = 0.34
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 20 LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEE 57
L F + +E ++ E EEK + +EK E+E
Sbjct: 293 LHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 27.6 bits (61), Expect = 1.5
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 13 EKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEE 64
+ + + F L + +E +K+ E E++ + + +EK E+E
Sbjct: 279 FDPKKLSVEEFFMDLHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 26.1 bits (57), Expect = 4.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 49 KEEEKEEEEEEKEEEEEEEEEEEEEK 74
KE +K E EEK + +E+ E++
Sbjct: 305 KENQKRRETEEKMRRAKLAKEKAEKE 330
>d1gska3 b.6.1.3 (A:357-510) Spore coat protein A, CotA {Bacillus
subtilis [TaxId: 1423]}
Length = 154
Score = 28.9 bits (64), Expect = 0.35
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 158 NCWPYDTPPPATPRRGSLQLWQF 180
N + P TP+ G+ ++W
Sbjct: 33 NNKRWHDPVTETPKVGTTEIWSI 55
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 29.3 bits (65), Expect = 0.35
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 24 LQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRW 80
L+TL E+ + + +E+ K+ E + + + + + +E E+EE E R
Sbjct: 5 LETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERT 61
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 27.5 bits (61), Expect = 0.50
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 181 LVALLDDPNNASCIVWTGRGMEFKLVEPEEVARRWGVQKNRPAMNYDKLSRSLRYY 236
L ++++D +N I W+ G + E + + + + N+ R L Y
Sbjct: 9 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS-NFASFVRQLNMY 63
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 28.5 bits (63), Expect = 0.71
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY 91
E + EE E +E +E E EE E E E E+ E+E ++ + + A +
Sbjct: 28 EYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDK 87
Query: 92 DKL 94
+
Sbjct: 88 AIV 90
Score = 27.0 bits (59), Expect = 2.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKE 75
+ EE E K+ +E E +EE E E E E+ E+E ++ +E
Sbjct: 30 AKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
Score = 26.2 bits (57), Expect = 3.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 8 KDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
K+ G E + E+ + E +E E EE E + E EK E++ ++ ++
Sbjct: 23 KNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
Score = 25.1 bits (54), Expect = 9.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
E + EE E + +E +E + EE + E E E+ E+E +
Sbjct: 27 MEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELD 70
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 28.1 bits (62), Expect = 0.91
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 1 MEEEKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEE---EEEEKKEEEEKEEEKEEEE 57
++++ E + + A+ +++ +T+D + E+ E E + + +++E E
Sbjct: 174 LKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 233
Query: 58 EEKEEEEEEEEEEEEEK 74
+ ++ EEEE + E EK
Sbjct: 234 QLIKKHEEEEAKAEREK 250
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 27.1 bits (60), Expect = 1.2
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ E+ + ++ + EE+E ++ E EEE +E E E + +R
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKR 51
Score = 25.5 bits (56), Expect = 4.0
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
E+ + ++ ++ +E+E ++ + EEE +E E E + R
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRI 52
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 27.9 bits (61), Expect = 1.3
Identities = 8/66 (12%), Positives = 17/66 (25%)
Query: 4 EKVEKDKGREKERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+ + L+ L + EEE + E + ++E E+
Sbjct: 322 PADDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGH 381
Query: 64 EEEEEE 69
Sbjct: 382 IPSAAS 387
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 27.7 bits (61), Expect = 1.3
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 1 MEEEKVEKDKGREKERAIEL--RIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEE 58
+E+ +G A++ +I ++ +E++ E E E + + +
Sbjct: 172 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231
Query: 59 EKEEEEEEEEE 69
+E + ++E
Sbjct: 232 LQEAIDFAQKE 242
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 37 EEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEE 71
+E + ++ KE+ + ++EE EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 27.3 bits (59), Expect = 2.1
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEE 68
+E KK +E+ + +++E EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.5 bits (57), Expect = 3.2
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEE 72
+E ++ +E+ K ++EE EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 4.0
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 29 EKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEE 63
+E ++ +E+ + +EE EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 4.6
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 30 KEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
+E ++ +E+ K ++EE +E ++E
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 4.7
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 35 EEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEE 69
+E K+ +E+ + + EE EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 25.3 bits (54), Expect = 6.8
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
++ +K +E+ ++ ++EE EE ++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 25.0 bits (53), Expect = 9.6
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 43 KKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
+E K+ KE+ + ++EE E+
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEE 360
>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal
domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Length = 103
Score = 26.5 bits (58), Expect = 1.5
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 141 TDFYPPQTDYSKRSDKQNCWPYDTPPPATPRRGSLQLWQFLVALLDDPNNASCIV 195
++ +PP + + + S Q + +L + + SCIV
Sbjct: 28 SNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIV 82
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella
pneumoniae [TaxId: 573]}
Length = 120
Score = 26.5 bits (57), Expect = 1.7
Identities = 8/87 (9%), Positives = 14/87 (16%), Gaps = 4/87 (4%)
Query: 130 IRFYRSLKPNFTDFYPPQTDYSKRSDKQNCWPYDTPPPATPRRGSLQLWQFLVALLDDPN 189
FY L + + + P + L +
Sbjct: 17 AAFYERLGFGIVFRDAGWMILQRGDLMLEFFAHPGLDPLASWFS----CCLRLDDLAEFY 72
Query: 190 NASCIVWTGRGMEFKLVEPEEVARRWG 216
V + WG
Sbjct: 73 RQCKSVGIQETSSGYPRIHAPELQGWG 99
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.6 bits (58), Expect = 2.7
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 15 ERAIELRIFLQTLDEKEEEEEEEEEEEEKKEEEEKE-EEKEEEEEEKEEEEEEEEEEEEE 73
E A+E + L E + E K ++++ + E+ + + ++
Sbjct: 10 EYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHYANAAIFADSKNQK 69
Query: 74 KEV 76
Sbjct: 70 TIC 72
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 113
Score = 25.6 bits (56), Expect = 2.9
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 50 EEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
EE + ++E E + EE+ + V R
Sbjct: 9 EELRAQQEAEAAQRLSEEKAQASAISVGSR 38
Score = 24.5 bits (53), Expect = 8.6
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKE 61
EE ++E E + EE+ +
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQAS 31
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.1 bits (57), Expect = 3.4
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 3 EEKVEKDKGREKERAIEL--RIFLQTLDEKEEEEE----EEEEEEEKKEEEEKEEEKEEE 56
E+ + + I+L + L+ + + E ++ + EE E+ E
Sbjct: 172 EKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEI 231
Query: 57 EEEKEEEEEEEE 68
E+EKEE E++++
Sbjct: 232 EKEKEENEKKKQ 243
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 25.3 bits (55), Expect = 3.8
Identities = 9/50 (18%), Positives = 26/50 (52%)
Query: 39 EEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPA 88
++E+ ++ +++K++ E E E EEE+++ + + + P+
Sbjct: 57 QKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGPS 106
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 25.9 bits (57), Expect = 3.8
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 21 RIFLQTLDEKEEEEEEEEEEE-EKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
R F + + + E +E E +E + K E+ +E EEEE ++
Sbjct: 88 RQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKK 138
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 25.5 bits (56), Expect = 3.8
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 31 EEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEE 73
+ EE+ + ++K E E+E+ E +++E+ +
Sbjct: 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 123
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.1 bits (56), Expect = 4.1
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 22 IFLQTLDEKEE-------EEEEEEEEEEKKEEEEK 49
F+ +E E E++ E+ E
Sbjct: 288 SFVLDEEENGRVISVWKVEAEDKTEKLAAALEHHH 322
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 25.2 bits (55), Expect = 4.1
Identities = 7/48 (14%), Positives = 20/48 (41%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+ ++E +K EE++ + K + + ++ +E +R
Sbjct: 47 RISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKR 94
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 25.6 bits (56), Expect = 4.8
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 26 TLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEE 66
T+ + E + E + + E + EE
Sbjct: 95 TVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESA 135
Score = 25.2 bits (55), Expect = 6.0
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEE 70
+ E + + E + + E + EE
Sbjct: 99 AVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESA 135
>d1c8ba_ c.56.1.2 (A:) Germination protease {Bacillus megaterium
[TaxId: 1404]}
Length = 371
Score = 26.0 bits (57), Expect = 5.5
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 38 EEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRPAMNY 91
E ++ E + K + E + +E+EE+ + E+ + Y
Sbjct: 19 EAKDIALENQPKPNNQSEIKGVIVKEKEEQGVKISMVEITEEGAEAIGKKKGRY 72
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.1 bits (57), Expect = 5.5
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 7 EKDKGREKERAIE-LRIFLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEE 65
E K R++ +E L + L +D E E K + E
Sbjct: 340 ELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAG 399
Query: 66 EEEEEEEEKE 75
++ E E
Sbjct: 400 DDAARPEWLE 409
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 207
Score = 25.2 bits (55), Expect = 6.6
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 23 FLQTLDEKEEEEEEEEEEEEKKEEEEKEEEKEEEEEEK 60
++Q+L+ EE + + E + +++ E ++
Sbjct: 6 YIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQ 43
>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma
constant domain 3, CH3-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 24.6 bits (53), Expect = 7.2
Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 141 TDFYPPQTDYSKRSDKQNCWPYDTPPPATPRRGSLQLWQFLVALLDDPNNA---SCIV 195
FYP S+ Q Y T PP GS L+ L SC V
Sbjct: 29 KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV 86
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 25.3 bits (54), Expect = 7.3
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 41 EEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEK 74
++ EE + E++ E E +E+ + E ++
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 25.4 bits (55), Expect = 8.2
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 32 EEEEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARR 79
+++ ++ +K++ E EK +++ E + +E +E R
Sbjct: 15 LDQDYKDMLAKKRDGFE---EKYPQDKIDEVFQWTTTKEYQELNFQRE 59
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid
dehydrogenase, PP module {Human (Homo sapiens) [TaxId:
9606]}
Length = 395
Score = 25.2 bits (54), Expect = 9.7
Identities = 6/54 (11%), Positives = 22/54 (40%)
Query: 34 EEEEEEEEEKKEEEEKEEEKEEEEEEKEEEEEEEEEEEEEKEVARRWGVQKNRP 87
+E +++ + + +EE+E+ ++ ++V + + +P
Sbjct: 298 VDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKP 351
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.130 0.372
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,007,461
Number of extensions: 55635
Number of successful extensions: 1558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 322
Length of query: 246
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,268,006
Effective search space: 206684978
Effective search space used: 206684978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.2 bits)