BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13887
(107 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 184 bits (466), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/101 (83%), Positives = 91/101 (90%)
Query: 6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS +MTGSYNNFFRMFDR KRD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 383
Query: 66 EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
E KP+T+L+PRKVC GKRKKDEISVD LDFNKKILHTAW
Sbjct: 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW 424
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 10 YLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR--DATLEAAREI 67
YL+ L L E F E+ W G ++ N F +++RI+ R +A +EA++E
Sbjct: 490 YLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEE 549
Query: 68 AK 69
K
Sbjct: 550 VK 551
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 10 YLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR--DATLEAAREI 67
YL+ L L E F E+ W G ++ N F +++RI+ R +A +EA++E
Sbjct: 490 YLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEE 549
Query: 68 AK 69
K
Sbjct: 550 VK 551
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 10 YLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR--DATLEAARE 66
YL+ L L E F E+ W G ++ N F +++RI+ R +A +EA++E
Sbjct: 491 YLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKE 549
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 44 YNNFFRMFDRINKRDATLEAAREIAKPKTLLR------PRKVCTGGKRKKDEISVDCLDF 97
Y + +++ K EAAR + + L R PR+ KR K ++S+ C+DF
Sbjct: 104 YQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDF 163
Query: 98 NKKI 101
NK +
Sbjct: 164 NKNL 167
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 44 YNNFFRMFDRINKRDATLEAAREIAKPKTLLR------PRKVCTGGKRKKDEISVDCLDF 97
Y + +++ K EAAR + + L R PR+ KR K ++S+ C+DF
Sbjct: 104 YQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDF 163
Query: 98 NKKI 101
NK +
Sbjct: 164 NKNL 167
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 10 YLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR--DATLEAAR 65
YL+ L L E F E+ W G ++ N F +++RI+ R +A +EA++
Sbjct: 503 YLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASK 560
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 10 YLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR--DATLEAAR 65
YL+ L L E F E+ W G ++ N F +++RI+ R +A +EA++
Sbjct: 490 YLKPVLPKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASK 547
>pdb|3E6G|A Chain A, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|B Chain B, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|C Chain C, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3E6G|D Chain D, Crystal Structure Of Xometc, A Cystathionine C-Lyase-Like
Protein From Xanthomonas Oryzae Pv.Oryzae
pdb|3NNP|A Chain A, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NNP|B Chain B, Native Structure Of Xometc, A Cystathionine C-Lyase
Protein From Xanthomonas Oryzae Pv.Oryzae, At Ph 5.2
pdb|3NMY|A Chain A, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|B Chain B, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|C Chain C, Native Structure Of Xometc At Ph 9.0
pdb|3NMY|D Chain D, Native Structure Of Xometc At Ph 9.0
Length = 400
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLE 62
E+ +G+ M Y FR+F+R+ +R A L+
Sbjct: 100 ELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLD 133
>pdb|4DYO|A Chain A, Crystal Structure Of Human Aspartyl Aminopeptidase (Dnpep)
In Complex With Aspartic Acid Hydroxamate
Length = 485
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 8 HEYLRSKLCS---LYENDCIFDKFEVCWSGTDSAIMTGSYNNF 47
H L S LC+ L D + + E+C + T A++ G+Y+ F
Sbjct: 227 HSVLMSLLCAHLGLSPKDIV--EMELCLADTQPAVLGGAYDEF 267
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTL 73
D+FE W SA+ G F + D + + ++ E+A +TL
Sbjct: 123 DRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTL 170
>pdb|4H56|A Chain A, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|B Chain B, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|C Chain C, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|D Chain D, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|E Chain E, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|F Chain F, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|G Chain G, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|H Chain H, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|I Chain I, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|J Chain J, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|K Chain K, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|L Chain L, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|M Chain M, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
pdb|4H56|N Chain N, Crystal Structure Of The Clostridium Perfringens Netb
Toxin In The Membrane Inserted Form
Length = 296
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 19 YENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLE 62
++ND I + W GT+ T YN F MF +IN +D +E
Sbjct: 253 FDNDYILNWETTQWRGTNKLSSTSEYNEF--MF-KINWQDHKIE 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,328,180
Number of Sequences: 62578
Number of extensions: 119399
Number of successful extensions: 192
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 13
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)