Query psy13887
Match_columns 107
No_of_seqs 116 out of 162
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:57:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1354|consensus 100.0 7.9E-46 1.7E-50 306.1 6.3 105 2-106 307-413 (433)
2 COG5170 CDC55 Serine/threonine 99.9 8.3E-28 1.8E-32 198.7 4.8 105 2-106 315-439 (460)
3 PF00400 WD40: WD domain, G-be 97.5 0.00013 2.8E-09 40.2 3.6 25 28-52 15-39 (39)
4 KOG2394|consensus 97.1 0.00054 1.2E-08 60.5 4.2 49 4-54 313-362 (636)
5 smart00320 WD40 WD40 repeats. 95.9 0.013 2.8E-07 28.5 3.1 25 28-52 16-40 (40)
6 KOG0266|consensus 94.8 0.035 7.7E-07 46.3 3.8 28 30-57 294-321 (456)
7 KOG1446|consensus 94.7 0.04 8.6E-07 45.7 3.9 29 28-56 236-264 (311)
8 KOG0288|consensus 94.6 0.022 4.7E-07 49.2 2.2 52 5-56 365-419 (459)
9 PF08662 eIF2A: Eukaryotic tra 94.3 0.06 1.3E-06 40.2 3.8 27 29-55 105-134 (194)
10 PF08662 eIF2A: Eukaryotic tra 94.3 0.053 1.2E-06 40.4 3.4 28 28-55 147-180 (194)
11 KOG0315|consensus 94.2 0.043 9.3E-07 45.2 3.0 28 28-55 262-289 (311)
12 KOG0271|consensus 94.1 0.041 8.8E-07 47.5 2.7 26 30-55 163-188 (480)
13 KOG0273|consensus 94.0 0.042 9.1E-07 48.1 2.7 41 21-61 229-272 (524)
14 KOG0272|consensus 93.9 0.053 1.1E-06 46.9 3.1 30 26-55 347-376 (459)
15 KOG0313|consensus 93.6 0.031 6.7E-07 47.8 1.2 46 17-62 96-141 (423)
16 KOG0266|consensus 93.5 0.11 2.4E-06 43.3 4.3 38 28-65 250-288 (456)
17 KOG0299|consensus 93.5 0.087 1.9E-06 45.8 3.7 29 28-56 206-234 (479)
18 KOG0291|consensus 92.6 0.16 3.4E-06 46.9 4.1 39 29-67 483-523 (893)
19 KOG0284|consensus 92.5 0.11 2.5E-06 44.9 3.0 41 29-69 101-142 (464)
20 KOG0275|consensus 92.3 0.086 1.9E-06 45.1 2.1 36 29-64 217-256 (508)
21 cd00200 WD40 WD40 domain, foun 92.0 0.24 5.2E-06 34.1 3.6 28 29-56 14-41 (289)
22 PTZ00421 coronin; Provisional 91.2 0.33 7.2E-06 41.6 4.5 29 28-56 172-200 (493)
23 KOG0647|consensus 91.1 0.39 8.5E-06 40.3 4.6 42 28-69 76-117 (347)
24 KOG0279|consensus 91.1 0.51 1.1E-05 39.2 5.2 42 29-70 68-118 (315)
25 KOG0272|consensus 90.9 0.24 5.1E-06 43.0 3.2 30 28-57 307-336 (459)
26 TIGR03866 PQQ_ABC_repeats PQQ- 90.8 0.59 1.3E-05 33.9 4.8 28 29-56 253-281 (300)
27 KOG0271|consensus 90.6 0.27 5.9E-06 42.6 3.3 28 29-56 372-399 (480)
28 KOG0283|consensus 90.3 0.5 1.1E-05 43.1 4.9 35 30-67 457-491 (712)
29 cd00200 WD40 WD40 domain, foun 90.2 0.33 7.1E-06 33.4 2.9 24 29-52 266-289 (289)
30 KOG0310|consensus 90.1 0.37 8E-06 42.1 3.7 35 31-65 161-195 (487)
31 KOG0268|consensus 89.6 0.25 5.4E-06 42.4 2.3 28 28-55 276-303 (433)
32 KOG0313|consensus 89.4 0.36 7.8E-06 41.5 3.1 36 31-66 200-235 (423)
33 KOG0645|consensus 89.1 0.49 1.1E-05 39.3 3.6 26 29-54 66-91 (312)
34 KOG0282|consensus 88.5 0.31 6.6E-06 42.8 2.1 28 29-56 263-290 (503)
35 PTZ00421 coronin; Provisional 87.8 0.74 1.6E-05 39.5 4.0 28 28-55 79-107 (493)
36 KOG0973|consensus 87.2 0.45 9.8E-06 44.5 2.5 29 26-54 131-159 (942)
37 KOG1274|consensus 87.0 0.85 1.8E-05 42.7 4.1 42 26-67 233-281 (933)
38 KOG2919|consensus 86.7 0.84 1.8E-05 38.9 3.7 37 22-59 156-193 (406)
39 KOG1009|consensus 86.6 0.48 1E-05 40.9 2.2 29 28-56 127-155 (434)
40 KOG2394|consensus 86.4 0.69 1.5E-05 41.5 3.1 27 29-55 295-321 (636)
41 KOG0279|consensus 86.2 0.98 2.1E-05 37.6 3.7 31 26-56 107-137 (315)
42 KOG0273|consensus 85.6 0.84 1.8E-05 40.2 3.2 42 28-69 456-505 (524)
43 PLN00181 protein SPA1-RELATED; 85.2 0.97 2.1E-05 40.0 3.5 26 28-53 767-792 (793)
44 KOG0293|consensus 85.1 0.9 2E-05 39.8 3.2 38 18-55 306-343 (519)
45 KOG0318|consensus 85.0 0.93 2E-05 40.5 3.2 25 30-54 536-560 (603)
46 KOG0318|consensus 84.8 1.1 2.4E-05 40.0 3.6 28 28-55 239-266 (603)
47 PF04762 IKI3: IKI3 family; I 84.7 0.79 1.7E-05 42.4 2.8 31 26-56 211-247 (928)
48 PF14727 PHTB1_N: PTHB1 N-term 84.6 1.4 3E-05 37.6 4.1 56 5-64 4-69 (418)
49 PTZ00420 coronin; Provisional 84.4 1.6 3.4E-05 38.5 4.4 29 28-56 171-199 (568)
50 PF07676 PD40: WD40-like Beta 84.0 1.8 3.8E-05 23.9 3.1 26 26-51 10-38 (39)
51 PLN00181 protein SPA1-RELATED; 83.4 1.4 3E-05 39.0 3.7 26 29-54 488-513 (793)
52 KOG4328|consensus 83.0 1.1 2.4E-05 39.3 2.9 25 29-53 374-398 (498)
53 PTZ00420 coronin; Provisional 82.5 1.7 3.7E-05 38.3 3.9 28 29-56 130-158 (568)
54 KOG0286|consensus 81.2 1.1 2.4E-05 37.7 2.1 25 27-51 317-342 (343)
55 KOG0280|consensus 80.4 1.3 2.8E-05 37.2 2.3 22 34-55 221-242 (339)
56 KOG2096|consensus 80.1 2.1 4.6E-05 36.6 3.5 35 30-68 284-318 (420)
57 KOG1273|consensus 79.6 3.8 8.3E-05 35.0 4.8 27 30-56 71-97 (405)
58 TIGR03866 PQQ_ABC_repeats PQQ- 79.3 3.3 7.2E-05 30.0 3.9 28 29-56 35-63 (300)
59 KOG0291|consensus 78.7 2.6 5.5E-05 39.3 3.7 32 25-56 350-382 (893)
60 KOG0263|consensus 78.6 2.4 5.3E-05 38.8 3.5 27 30-56 583-609 (707)
61 KOG0641|consensus 78.3 2.7 5.8E-05 34.8 3.4 26 30-55 95-120 (350)
62 KOG0315|consensus 77.2 4.5 9.8E-05 33.6 4.5 28 28-55 219-246 (311)
63 KOG2055|consensus 76.4 2.5 5.4E-05 37.3 2.9 27 29-55 392-418 (514)
64 KOG1445|consensus 75.8 3.1 6.6E-05 38.6 3.4 32 21-55 720-751 (1012)
65 KOG2048|consensus 75.2 4 8.7E-05 37.2 3.9 31 28-58 158-188 (691)
66 KOG0283|consensus 74.9 2.9 6.3E-05 38.3 3.0 26 30-55 273-298 (712)
67 KOG0645|consensus 74.1 5.9 0.00013 33.0 4.4 29 27-55 153-181 (312)
68 KOG0772|consensus 74.0 3.3 7.2E-05 37.2 3.1 25 31-55 174-198 (641)
69 KOG0263|consensus 73.4 4 8.6E-05 37.4 3.5 42 11-58 528-569 (707)
70 KOG0286|consensus 73.4 5.2 0.00011 33.7 4.0 27 29-55 102-128 (343)
71 PRK01742 tolB translocation pr 72.7 5.7 0.00012 32.6 4.0 29 28-56 207-238 (429)
72 KOG0282|consensus 70.4 4.8 0.0001 35.5 3.2 27 29-55 437-463 (503)
73 KOG0278|consensus 70.1 1 2.2E-05 37.5 -0.9 27 29-55 105-131 (334)
74 KOG0268|consensus 68.4 5 0.00011 34.7 2.9 42 14-55 305-346 (433)
75 KOG0643|consensus 67.7 9.4 0.0002 32.0 4.3 30 28-57 56-85 (327)
76 KOG0296|consensus 66.9 5.6 0.00012 34.2 2.9 27 31-57 197-223 (399)
77 KOG0296|consensus 66.5 7.4 0.00016 33.5 3.5 28 29-56 111-138 (399)
78 KOG1407|consensus 66.3 4.8 0.0001 33.5 2.3 25 30-54 195-219 (313)
79 KOG0278|consensus 66.1 8 0.00017 32.3 3.5 26 31-56 274-299 (334)
80 KOG2919|consensus 65.7 5.9 0.00013 34.0 2.7 26 29-54 54-79 (406)
81 KOG0647|consensus 65.3 7.2 0.00016 32.9 3.2 32 21-55 27-59 (347)
82 TIGR02800 propeller_TolB tol-p 64.4 10 0.00023 30.0 3.8 29 28-56 193-224 (417)
83 KOG0973|consensus 64.1 7.2 0.00016 36.9 3.2 26 29-54 73-99 (942)
84 KOG0772|consensus 63.9 4.6 0.0001 36.4 1.9 26 29-54 322-347 (641)
85 KOG0319|consensus 63.1 10 0.00022 35.1 3.9 36 29-67 468-503 (775)
86 KOG1832|consensus 63.0 9 0.00019 37.0 3.6 30 27-56 1103-1133(1516)
87 KOG4497|consensus 62.8 11 0.00024 32.5 3.9 40 30-69 97-137 (447)
88 KOG2315|consensus 62.7 8.5 0.00018 34.5 3.3 26 30-55 360-391 (566)
89 KOG0771|consensus 62.4 9.3 0.0002 32.9 3.4 42 11-52 130-172 (398)
90 PF02239 Cytochrom_D1: Cytochr 62.1 10 0.00022 31.2 3.5 28 28-55 81-109 (369)
91 KOG0646|consensus 61.5 9 0.00019 33.7 3.2 25 29-53 127-152 (476)
92 KOG0305|consensus 60.5 8.4 0.00018 33.8 2.9 38 14-55 211-248 (484)
93 KOG0649|consensus 60.3 9.6 0.00021 31.7 3.0 38 34-71 166-204 (325)
94 PF15492 Nbas_N: Neuroblastoma 60.2 14 0.0003 30.5 3.9 28 29-56 48-75 (282)
95 KOG0640|consensus 59.6 8.5 0.00018 33.0 2.7 24 31-54 119-142 (430)
96 KOG2096|consensus 59.4 11 0.00023 32.5 3.2 25 30-54 92-116 (420)
97 KOG0265|consensus 58.7 8 0.00017 32.6 2.3 29 27-55 269-297 (338)
98 PF12894 Apc4_WD40: Anaphase-p 58.4 23 0.0005 21.3 3.8 26 30-55 17-42 (47)
99 PRK02889 tolB translocation pr 58.4 15 0.00032 30.3 3.8 28 29-56 200-230 (427)
100 KOG1063|consensus 58.3 7.4 0.00016 35.9 2.2 28 29-56 623-650 (764)
101 PF07894 DUF1669: Protein of u 58.0 5 0.00011 33.0 1.0 23 24-49 228-250 (284)
102 KOG0641|consensus 57.5 12 0.00025 31.1 3.0 27 29-55 278-304 (350)
103 KOG1539|consensus 57.1 13 0.00029 34.9 3.7 27 30-56 582-608 (910)
104 KOG4532|consensus 57.0 12 0.00027 31.4 3.1 56 18-75 197-252 (344)
105 PRK05137 tolB translocation pr 56.0 22 0.00048 29.1 4.5 29 28-56 205-236 (435)
106 KOG0269|consensus 54.9 16 0.00034 34.2 3.7 28 28-55 224-251 (839)
107 KOG1408|consensus 54.7 15 0.00032 34.7 3.5 43 30-72 465-518 (1080)
108 KOG1963|consensus 54.1 8.4 0.00018 35.8 1.9 25 30-55 515-539 (792)
109 KOG0639|consensus 53.6 13 0.00029 33.6 3.0 27 29-55 470-496 (705)
110 COG2319 FOG: WD40 repeat [Gene 53.1 20 0.00044 25.4 3.3 27 31-57 248-274 (466)
111 PF03622 IBV_3B: IBV 3B protei 53.0 8.1 0.00018 25.4 1.2 13 21-33 30-42 (64)
112 PRK04922 tolB translocation pr 52.7 18 0.0004 29.6 3.5 29 28-56 207-238 (433)
113 KOG0281|consensus 52.7 12 0.00026 32.6 2.5 25 31-55 405-429 (499)
114 PF01436 NHL: NHL repeat; Int 51.3 27 0.00058 18.4 2.9 23 29-51 6-28 (28)
115 KOG0265|consensus 50.5 22 0.00047 30.1 3.6 28 29-56 95-122 (338)
116 PRK11028 6-phosphogluconolacto 50.3 22 0.00047 27.5 3.4 26 29-54 84-110 (330)
117 PRK11028 6-phosphogluconolacto 50.2 24 0.00052 27.2 3.6 28 28-55 129-157 (330)
118 smart00564 PQQ beta-propeller 49.7 27 0.00058 18.1 2.8 19 37-55 7-25 (33)
119 PF11768 DUF3312: Protein of u 49.5 19 0.00042 32.2 3.3 27 28-54 303-329 (545)
120 KOG0295|consensus 48.4 21 0.00046 30.8 3.3 35 29-63 339-374 (406)
121 PRK01742 tolB translocation pr 47.6 17 0.00038 29.8 2.6 26 27-52 374-399 (429)
122 KOG0293|consensus 46.9 27 0.00058 30.9 3.7 29 28-56 228-256 (519)
123 KOG0275|consensus 44.0 26 0.00056 30.4 3.2 27 29-55 353-379 (508)
124 KOG1063|consensus 43.9 36 0.00079 31.6 4.2 25 28-52 320-344 (764)
125 KOG2111|consensus 43.1 35 0.00075 29.0 3.7 26 31-56 188-214 (346)
126 PRK00178 tolB translocation pr 43.1 41 0.0009 27.1 4.1 28 28-55 202-232 (430)
127 KOG4497|consensus 43.1 12 0.00027 32.3 1.1 26 29-54 215-240 (447)
128 PRK05137 tolB translocation pr 42.0 32 0.0007 28.2 3.4 27 29-55 250-279 (435)
129 PF07865 DUF1652: Protein of u 41.8 70 0.0015 21.0 4.3 35 14-56 3-37 (69)
130 PRK04792 tolB translocation pr 41.6 40 0.00086 28.1 3.9 28 29-56 222-252 (448)
131 PF00930 DPPIV_N: Dipeptidyl p 41.4 13 0.00028 29.7 1.0 28 18-46 94-122 (353)
132 KOG0281|consensus 41.4 33 0.00071 30.0 3.4 27 30-56 241-267 (499)
133 KOG0640|consensus 41.3 27 0.0006 30.0 2.9 26 30-55 267-292 (430)
134 KOG0644|consensus 41.2 13 0.00028 35.4 1.1 46 1-55 176-221 (1113)
135 KOG1920|consensus 41.2 30 0.00064 33.9 3.4 29 27-55 198-231 (1265)
136 PRK02889 tolB translocation pr 40.5 28 0.0006 28.6 2.8 26 29-54 244-270 (427)
137 KOG0306|consensus 39.7 27 0.00058 32.9 2.8 24 31-54 557-580 (888)
138 PLN02919 haloacid dehalogenase 38.9 51 0.0011 31.2 4.5 29 29-57 863-891 (1057)
139 KOG0305|consensus 38.7 25 0.00054 30.9 2.4 26 29-54 306-331 (484)
140 KOG1036|consensus 38.3 46 0.001 28.0 3.7 35 29-64 59-93 (323)
141 KOG0274|consensus 38.1 32 0.0007 30.2 3.0 24 31-54 336-359 (537)
142 KOG0316|consensus 37.9 44 0.00096 27.8 3.5 27 30-56 107-133 (307)
143 KOG0277|consensus 37.5 48 0.001 27.7 3.7 44 30-73 110-163 (311)
144 KOG0302|consensus 37.2 29 0.00062 30.3 2.4 28 29-56 262-290 (440)
145 KOG1446|consensus 36.6 72 0.0016 26.8 4.6 28 29-56 19-46 (311)
146 KOG0306|consensus 36.4 40 0.00086 31.8 3.3 38 31-69 641-678 (888)
147 KOG1332|consensus 36.1 44 0.00094 27.8 3.2 29 36-64 23-51 (299)
148 KOG2139|consensus 36.0 48 0.001 28.9 3.6 27 30-56 201-228 (445)
149 PRK04922 tolB translocation pr 35.7 59 0.0013 26.7 4.0 29 29-57 340-371 (433)
150 PF10433 MMS1_N: Mono-function 35.6 47 0.001 27.9 3.5 28 28-55 47-74 (504)
151 PLN02919 haloacid dehalogenase 35.3 56 0.0012 30.9 4.2 28 29-56 808-835 (1057)
152 PRK03629 tolB translocation pr 34.8 56 0.0012 27.0 3.7 28 29-56 203-233 (429)
153 KOG2445|consensus 34.5 70 0.0015 27.3 4.3 24 30-53 19-42 (361)
154 KOG0308|consensus 34.0 44 0.00094 30.9 3.1 26 31-56 220-245 (735)
155 COG2319 FOG: WD40 repeat [Gene 32.9 1.1E+02 0.0023 21.7 4.4 27 29-55 160-187 (466)
156 PRK03629 tolB translocation pr 32.7 59 0.0013 26.8 3.6 20 28-47 377-396 (429)
157 KOG0285|consensus 32.3 70 0.0015 28.0 4.0 41 28-68 281-322 (460)
158 KOG0316|consensus 31.5 64 0.0014 26.8 3.5 29 27-55 230-258 (307)
159 KOG1407|consensus 31.4 52 0.0011 27.5 3.0 26 29-54 25-50 (313)
160 KOG2055|consensus 31.4 35 0.00076 30.3 2.1 51 3-55 238-289 (514)
161 KOG2321|consensus 31.0 54 0.0012 30.1 3.2 26 30-55 57-83 (703)
162 PF12522 UL73_N: Cytomegalovir 30.8 30 0.00064 19.2 1.0 10 38-47 7-16 (27)
163 PRK01029 tolB translocation pr 30.7 81 0.0018 26.2 4.1 29 29-57 331-362 (428)
164 KOG0289|consensus 30.7 61 0.0013 28.8 3.4 26 31-56 354-379 (506)
165 KOG0284|consensus 30.6 79 0.0017 27.9 4.0 41 29-69 227-276 (464)
166 TIGR02610 PHA_gran_rgn putativ 29.5 1.1E+02 0.0025 20.7 4.0 31 29-63 35-65 (91)
167 PF08553 VID27: VID27 cytoplas 29.5 50 0.0011 30.8 2.8 29 27-55 579-607 (794)
168 KOG2111|consensus 29.5 70 0.0015 27.2 3.5 29 27-55 229-257 (346)
169 KOG0643|consensus 29.2 44 0.00094 28.1 2.2 26 29-54 195-220 (327)
170 smart00155 PLDc Phospholipase 29.0 55 0.0012 17.0 1.9 17 26-45 7-23 (28)
171 KOG1354|consensus 28.8 60 0.0013 28.2 3.0 25 29-54 277-301 (433)
172 PF11950 DUF3467: Protein of u 28.5 41 0.00089 22.7 1.6 24 38-63 23-46 (92)
173 KOG1538|consensus 28.3 84 0.0018 29.8 4.0 35 29-63 137-171 (1081)
174 KOG2139|consensus 28.1 54 0.0012 28.6 2.6 24 30-53 244-267 (445)
175 KOG0294|consensus 27.6 48 0.001 28.3 2.2 21 35-55 52-72 (362)
176 KOG1036|consensus 27.3 66 0.0014 27.1 2.9 24 31-54 101-124 (323)
177 KOG0639|consensus 26.7 50 0.0011 30.1 2.2 29 26-54 552-581 (705)
178 KOG4640|consensus 26.7 93 0.002 28.6 4.0 28 29-56 67-94 (665)
179 PRK03094 hypothetical protein; 26.2 80 0.0017 21.4 2.7 49 6-64 12-64 (80)
180 PF02239 Cytochrom_D1: Cytochr 25.7 92 0.002 25.6 3.5 27 30-56 42-68 (369)
181 PF11768 DUF3312: Protein of u 25.6 1E+02 0.0022 27.8 3.9 27 29-55 264-290 (545)
182 KOG2106|consensus 25.3 77 0.0017 28.8 3.1 25 30-54 453-477 (626)
183 KOG1523|consensus 25.3 87 0.0019 26.8 3.3 26 31-56 17-42 (361)
184 KOG1408|consensus 24.2 96 0.0021 29.6 3.6 29 28-56 600-628 (1080)
185 PF08678 Rsbr_N: Rsbr N termin 23.6 16 0.00035 26.7 -1.1 13 95-107 61-73 (129)
186 COG1705 FlgJ Muramidase (flage 23.6 77 0.0017 25.0 2.6 32 33-64 76-110 (201)
187 KOG0322|consensus 23.2 1E+02 0.0022 26.0 3.3 28 29-56 256-283 (323)
188 PF13570 PQQ_3: PQQ-like domai 23.2 1.3E+02 0.0028 16.4 2.9 20 35-54 20-39 (40)
189 KOG1524|consensus 23.2 77 0.0017 29.1 2.8 26 31-56 111-136 (737)
190 TIGR02800 propeller_TolB tol-p 22.9 1.5E+02 0.0032 23.4 4.1 28 28-55 325-355 (417)
191 KOG0303|consensus 22.5 1.1E+02 0.0024 26.9 3.5 34 29-63 178-211 (472)
192 KOG4283|consensus 22.4 60 0.0013 27.8 1.9 42 18-59 239-281 (397)
193 KOG0301|consensus 22.4 72 0.0016 29.7 2.5 25 30-54 105-130 (745)
194 PF15323 Ashwin: Developmental 22.3 52 0.0011 26.1 1.4 15 93-107 200-214 (214)
195 KOG1524|consensus 21.9 77 0.0017 29.1 2.5 28 29-56 191-218 (737)
196 COG4124 ManB Beta-mannanase [C 21.7 65 0.0014 27.5 1.9 40 6-53 211-253 (355)
197 KOG1587|consensus 21.6 79 0.0017 28.2 2.5 27 28-54 490-516 (555)
198 KOG2110|consensus 21.6 1.3E+02 0.0029 26.0 3.8 28 30-57 179-207 (391)
199 PF14262 DUF4353: Domain of un 20.8 90 0.002 25.2 2.5 51 21-71 90-142 (264)
200 KOG4328|consensus 20.2 1E+02 0.0022 27.4 2.9 32 26-57 422-453 (498)
201 PF14783 BBS2_Mid: Ciliary BBS 20.1 2.3E+02 0.005 20.2 4.2 24 31-54 9-33 (111)
No 1
>KOG1354|consensus
Probab=100.00 E-value=7.9e-46 Score=306.07 Aligned_cols=105 Identities=68% Similarity=1.076 Sum_probs=102.9
Q ss_pred CCcccchHHHHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEee--cCCCcceeEeeeccccCccccCCCcce
Q psy13887 2 FPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFD--RINKRDATLEAAREIAKPKTLLRPRKV 79 (107)
Q Consensus 2 v~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd--~~~~~~~~LeAsk~~~k~k~~~~~~~~ 79 (107)
|+|||||||||+|||+|||||||||||||||||++++||||||||+||||+ +++.++++|||++++.++++++++++|
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V 386 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLV 386 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceee
Confidence 789999999999999999999999999999999999999999999999999 778899999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCcccccccccCC
Q psy13887 80 CTGGKRKKDEISVDCLDFNKKILHTAW 106 (107)
Q Consensus 80 ~~~~~~~~~~~~~d~~DF~kKILH~aW 106 (107)
+.+|+|+++++++|++||++||||+||
T Consensus 387 ~~~g~r~~~~~~vd~ldf~kkilh~aW 413 (433)
T KOG1354|consen 387 SSSGKRKRDEISVDALDFRKKILHTAW 413 (433)
T ss_pred ecCCCccccccccchhhhhhHHHhhcc
Confidence 999999999999999999999999999
No 2
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.94 E-value=8.3e-28 Score=198.70 Aligned_cols=105 Identities=31% Similarity=0.456 Sum_probs=82.1
Q ss_pred CCcccchHHHHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCC-----cceeEeeeccccCccccCCC
Q psy13887 2 FPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINK-----RDATLEAAREIAKPKTLLRP 76 (107)
Q Consensus 2 v~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~-----~~~~LeAsk~~~k~k~~~~~ 76 (107)
|+|+|+|+.|+++|||+||||||||||||.+|||+++||||||+|+|.||+..+. ..|++.|+.++.+.+..-.+
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~ 394 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCET 394 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccccCCCCcceEEEecccCCcccccCcccc
Confidence 6899999999999999999999999999999999999999999999999997643 35888999888776521111
Q ss_pred cc--------------ee-eCCCCCCCCCCCCCCcccccccccCC
Q psy13887 77 RK--------------VC-TGGKRKKDEISVDCLDFNKKILHTAW 106 (107)
Q Consensus 77 ~~--------------~~-~~~~~~~~~~~~d~~DF~kKILH~aW 106 (107)
.+ ++ .+++.......+|.+||.|||||.+|
T Consensus 395 nnv~kkd~~kn~~~rs~ss~a~g~~~~~eD~d~ld~~k~ilh~sW 439 (460)
T COG5170 395 NNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLDLLKKILHRSW 439 (460)
T ss_pred cccccccccccccccccccccCcceeeccCcchhHHHHHHHhhcc
Confidence 10 00 11111112335789999999999999
No 3
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.55 E-value=0.00013 Score=40.20 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=23.1
Q ss_pred eeeEEcCCCCeEEecccCCeEEEee
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFD 52 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd 52 (107)
..++|+|++..|+|||+++.++|||
T Consensus 15 ~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 15 NSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEecccccceeeCCCCEEEEEC
Confidence 3579999999999999999999996
No 4
>KOG2394|consensus
Probab=97.12 E-value=0.00054 Score=60.52 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=44.0
Q ss_pred cccchHHHHHhhhhhhhccccccceee-EEcCCCCeEEecccCCeEEEeecC
Q psy13887 4 SPQVHEYLRSKLCSLYENDCIFDKFEV-CWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 4 t~~vhe~Lr~kLcdLYEND~IFDKFec-~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
...|.+|...+|-.+.- +.|..+-| ||||||++|+||+=++++-||.-.
T Consensus 313 fLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 313 FLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred eEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 34678888899999888 99999999 999999999999999999999764
No 5
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.91 E-value=0.013 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.1
Q ss_pred eeeEEcCCCCeEEecccCCeEEEee
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFD 52 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd 52 (107)
..++|++++..+++|+.++.+++|+
T Consensus 16 ~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 16 TSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred eEEEECCCCCEEEEecCCCeEEEcC
Confidence 3568999999999999999999985
No 6
>KOG0266|consensus
Probab=94.79 E-value=0.035 Score=46.28 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=26.0
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
|++++||+.+++|||+++++|||..++.
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 6899999999999999999999998765
No 7
>KOG1446|consensus
Probab=94.71 E-value=0.04 Score=45.70 Aligned_cols=29 Identities=7% Similarity=0.242 Sum_probs=26.5
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
-++|++|||+.||+||+++..+||..+++
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 58999999999999999999999998653
No 8
>KOG0288|consensus
Probab=94.63 E-value=0.022 Score=49.16 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=40.0
Q ss_pred ccchHHHHHhhhhhhhccccccce---eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 5 PQVHEYLRSKLCSLYENDCIFDKF---EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 5 ~~vhe~Lr~kLcdLYEND~IFDKF---ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
..|||-=-...|-+|..+|.|+-- -+||||||.||++||-++-+.||+..++
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 344443334567788888888544 4599999999999999999999998753
No 9
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.31 E-value=0.06 Score=40.17 Aligned_cols=27 Identities=15% Similarity=0.489 Sum_probs=24.3
Q ss_pred eeEEcCCCCeEEecccCCe---EEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNF---FRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~---F~ifd~~~ 55 (107)
.++|||+|+++++|++.|+ ..+||...
T Consensus 105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred EEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 5899999999999999877 99999874
No 10
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=94.28 E-value=0.053 Score=40.43 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=24.5
Q ss_pred eeeEEcCCCCeEEeccc------CCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSY------NNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSY------nn~F~ifd~~~ 55 (107)
-.|+|||||++++|.+- +|-|+||+..+
T Consensus 147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 46899999999999875 69999999865
No 11
>KOG0315|consensus
Probab=94.22 E-value=0.043 Score=45.21 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=25.6
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.+|.||+||.|++|||-.+..|+|+...
T Consensus 262 Wdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 262 WDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred EeeeeccCccEEEecCCCCceeeccccc
Confidence 4799999999999999999999999754
No 12
>KOG0271|consensus
Probab=94.10 E-value=0.041 Score=47.51 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.9
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+.|||||+.|+|||-+|.+++||...
T Consensus 163 vawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 163 VAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred EEECCCcchhhccccCCeEEEecCCC
Confidence 48999999999999999999999654
No 13
>KOG0273|consensus
Probab=94.02 E-value=0.042 Score=48.08 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=30.9
Q ss_pred cccccccee---eEEcCCCCeEEecccCCeEEEeecCCCcceeE
Q psy13887 21 NDCIFDKFE---VCWSGTDSAIMTGSYNNFFRMFDRINKRDATL 61 (107)
Q Consensus 21 ND~IFDKFe---c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~L 61 (107)
--++|+-=+ +.||.||..++||||++..|||+..+..-.+|
T Consensus 229 ~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl 272 (524)
T KOG0273|consen 229 GKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTL 272 (524)
T ss_pred cccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhh
Confidence 344554333 48999999999999999999999877543333
No 14
>KOG0272|consensus
Probab=93.90 E-value=0.053 Score=46.88 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=27.2
Q ss_pred cceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.=|.+.|||+|-+++|||-+|..+|||-..
T Consensus 347 ~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 457899999999999999999999999754
No 15
>KOG0313|consensus
Probab=93.63 E-value=0.031 Score=47.82 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=33.1
Q ss_pred hhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCCcceeEe
Q psy13887 17 SLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLE 62 (107)
Q Consensus 17 dLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~Le 62 (107)
--|+++...|-.--.+-+-+++|+||||.+..|||+..++.--+++
T Consensus 96 P~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~~~ 141 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKTIV 141 (423)
T ss_pred CCccccccchhhhhhhcccCceEEEeecCCeeEEEecCCceEEEEe
Confidence 3355555556666666666899999999999999999775433333
No 16
>KOG0266|consensus
Probab=93.52 E-value=0.11 Score=43.32 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=30.7
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC-CcceeEeeec
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN-KRDATLEAAR 65 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~-~~~~~LeAsk 65 (107)
+-|||+++|+.|++||+++.+|||+..+ ...-+|++-.
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 8899999999999999999999999975 3233444443
No 17
>KOG0299|consensus
Probab=93.49 E-value=0.087 Score=45.82 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=26.2
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+-+|+|+||++++||.-.+.|+||+..+.
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ 234 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTL 234 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCccc
Confidence 45799999999999999999999998754
No 18
>KOG0291|consensus
Probab=92.60 E-value=0.16 Score=46.89 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=31.8
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC--cceeEeeeccc
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK--RDATLEAAREI 67 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~--~~~~LeAsk~~ 67 (107)
..++|++|+.+++|||++.+|||+.-.. +-=+||+..++
T Consensus 483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdv 523 (893)
T KOG0291|consen 483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDV 523 (893)
T ss_pred eeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccce
Confidence 4589999999999999999999998654 44567776665
No 19
>KOG0284|consensus
Probab=92.54 E-value=0.11 Score=44.87 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=29.7
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC-cceeEeeeccccC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK-RDATLEAAREIAK 69 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~-~~~~LeAsk~~~k 69 (107)
.++|.|+|++++|||+++.|-.|.-.+- -+..|||--++-|
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr 142 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR 142 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce
Confidence 4699999999999999999999975321 2344555444433
No 20
>KOG0275|consensus
Probab=92.33 E-value=0.086 Score=45.14 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=28.7
Q ss_pred ee-EEcCCCCeEEecccCCeEEEeecCCC---cceeEeee
Q psy13887 29 EV-CWSGTDSAIMTGSYNNFFRMFDRINK---RDATLEAA 64 (107)
Q Consensus 29 ec-~~sgd~~~v~TGSYnn~F~ifd~~~~---~~~~LeAs 64 (107)
|| .|||||++++|||-++|+.||+-.++ .|...||.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq 256 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ 256 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh
Confidence 67 79999999999999999999987653 34444444
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.00 E-value=0.24 Score=34.11 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=25.1
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.++|+++++.+++|+.++.+++|+..+.
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~ 41 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLETG 41 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeCC
Confidence 4699999999999999999999998653
No 22
>PTZ00421 coronin; Provisional
Probab=91.21 E-value=0.33 Score=41.61 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.7
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
..++||+||..++|||.++.++|||...+
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rsg 200 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence 35799999999999999999999997643
No 23
>KOG0647|consensus
Probab=91.10 E-value=0.39 Score=40.33 Aligned_cols=42 Identities=21% Similarity=0.500 Sum_probs=35.6
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccccC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAK 69 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~k 69 (107)
+.||||-||+-|.+|+=++..++||-.+.+-.++.+--.+-|
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvk 117 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVK 117 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCCeeeeeeccccee
Confidence 679999999999999999999999999887777666555544
No 24
>KOG0279|consensus
Probab=91.05 E-value=0.51 Score=39.25 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=32.7
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC---------cceeEeeeccccCc
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK---------RDATLEAAREIAKP 70 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~---------~~~~LeAsk~~~k~ 70 (107)
.|..|+||++.++|||....|+||.+++ ...+|....++.-+
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~ 118 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNR 118 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCc
Confidence 5789999999999999999999999863 23455555555433
No 25
>KOG0272|consensus
Probab=90.90 E-value=0.24 Score=42.97 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=27.6
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
|.|+|.+||+.++||+-+++=||||..+++
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCc
Confidence 789999999999999999999999987654
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.76 E-value=0.59 Score=33.91 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=23.8
Q ss_pred eeEEcCCCCeEEec-ccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTG-SYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TG-SYnn~F~ifd~~~~ 56 (107)
.++|+|||++++++ ++++..+|||..+.
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 46899999999886 56999999998764
No 27
>KOG0271|consensus
Probab=90.56 E-value=0.27 Score=42.56 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=25.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.+.+|||+++|+++|+++.++.|+...+
T Consensus 372 ~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 372 HVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred eEEECCCccEEEEeecccceeeeeCCCc
Confidence 4789999999999999999999987643
No 28
>KOG0283|consensus
Probab=90.32 E-value=0.5 Score=43.07 Aligned_cols=35 Identities=26% Similarity=0.558 Sum_probs=28.0
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccc
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREI 67 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~ 67 (107)
+|++|||+.++-|+|+++.++|+.. +..|+-+...
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~---~lk~~~~~~I 491 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTE---GLKLVSDFHI 491 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEcc---CCeEEEeeeE
Confidence 5999999999999999999999974 3444444443
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=90.19 E-value=0.33 Score=33.40 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=22.1
Q ss_pred eeEEcCCCCeEEecccCCeEEEee
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFD 52 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd 52 (107)
.++|++++..++||+.++.++||+
T Consensus 266 ~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 266 SLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEECCCCCEEEEecCCCeEEecC
Confidence 468999999999999999999995
No 30
>KOG0310|consensus
Probab=90.05 E-value=0.37 Score=42.15 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=26.1
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCCcceeEeeec
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk 65 (107)
+.+..+.-|+||||++++|.||........+|.+-
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh 195 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH 195 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCCceeEEecC
Confidence 33445667999999999999998776555566553
No 31
>KOG0268|consensus
Probab=89.64 E-value=0.25 Score=42.41 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=25.5
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
-++.+||.|+-++||||+..+|||..+.
T Consensus 276 ~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 276 MDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred EEeccCCCcchhccccccceEEEeecCC
Confidence 4688999999999999999999999764
No 32
>KOG0313|consensus
Probab=89.44 E-value=0.36 Score=41.48 Aligned_cols=36 Identities=11% Similarity=0.376 Sum_probs=30.5
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCCcceeEeeecc
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAARE 66 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~ 66 (107)
..++||..+.+|||++...||+-....+.++|-.-+
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccch
Confidence 568999999999999999999966666778886655
No 33
>KOG0645|consensus
Probab=89.09 E-value=0.49 Score=39.26 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=24.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.|+|||.|+++++|||....-||...
T Consensus 66 svAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 66 SVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred eeeecCCCcEEEEeeccceEEEeecC
Confidence 57899999999999999999999865
No 34
>KOG0282|consensus
Probab=88.47 E-value=0.31 Score=42.76 Aligned_cols=28 Identities=11% Similarity=0.535 Sum_probs=26.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+++||.+|+.++|+||..+.++||.+++
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccc
Confidence 4799999999999999999999999865
No 35
>PTZ00421 coronin; Provisional
Probab=87.78 E-value=0.74 Score=39.52 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=24.9
Q ss_pred eeeEEcC-CCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSG-TDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sg-d~~~v~TGSYnn~F~ifd~~~ 55 (107)
..++||| |+..++|||+++.++||+...
T Consensus 79 ~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred EEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 4579999 899999999999999999753
No 36
>KOG0973|consensus
Probab=87.23 E-value=0.45 Score=44.53 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=25.7
Q ss_pred cceeeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
|=-++||||||+.++++|+.|.+.||+..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccc
Confidence 34578999999999999999999999864
No 37
>KOG1274|consensus
Probab=86.99 E-value=0.85 Score=42.65 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=32.9
Q ss_pred cceee-EEcCCCCeEEecccCCeEEEeecC------CCcceeEeeeccc
Q psy13887 26 DKFEV-CWSGTDSAIMTGSYNNFFRMFDRI------NKRDATLEAAREI 67 (107)
Q Consensus 26 DKFec-~~sgd~~~v~TGSYnn~F~ifd~~------~~~~~~LeAsk~~ 67 (107)
-+|-| +|||.|.||++|+-+|.+-||+.. -...|+-||-+..
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN 281 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence 34555 999999999999999999999988 3455666665433
No 38
>KOG2919|consensus
Probab=86.72 E-value=0.84 Score=38.95 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=29.1
Q ss_pred cccccceeeEEcCCCCeEEecccCCeEEEeecC-CCcce
Q psy13887 22 DCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRI-NKRDA 59 (107)
Q Consensus 22 D~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~-~~~~~ 59 (107)
|.|=--+.+|||+||.++..| |++.+|||+.. +++++
T Consensus 156 de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 156 DEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDC 193 (406)
T ss_pred HhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCC
Confidence 345556889999999999865 99999999984 45443
No 39
>KOG1009|consensus
Probab=86.63 E-value=0.48 Score=40.88 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=26.2
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
++.||++|+..+++||=.|..++||...+
T Consensus 127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred hhhhccCCCceeeeeeccceEEEEEeccc
Confidence 45899999999999999999999998743
No 40
>KOG2394|consensus
Probab=86.35 E-value=0.69 Score=41.46 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=24.7
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+.|+||||++++|=|-+++.|||+-..
T Consensus 295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt 321 (636)
T KOG2394|consen 295 EFAFSPDGKYLATVSQDGFLRIFDFDT 321 (636)
T ss_pred ceeEcCCCceEEEEecCceEEEeeccH
Confidence 579999999999999999999998764
No 41
>KOG0279|consensus
Probab=86.19 E-value=0.98 Score=37.60 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=27.8
Q ss_pred cceeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
|.-.+++|+|+++|+|||=++...+|+.-+.
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 6678999999999999999999999987643
No 42
>KOG0273|consensus
Probab=85.57 E-value=0.84 Score=40.22 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=32.9
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC--------cceeEeeeccccC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK--------RDATLEAAREIAK 69 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~--------~~~~LeAsk~~~k 69 (107)
+.+.+||+|+++++||.++-+|||+.... .+...|...+..-
T Consensus 456 ysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 456 YSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred EEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence 46899999999999999999999998642 3455666665543
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.19 E-value=0.97 Score=39.96 Aligned_cols=26 Identities=19% Similarity=0.612 Sum_probs=23.8
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeec
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDR 53 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~ 53 (107)
..+||+|++..++||+.++.++||+.
T Consensus 767 ~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 767 SSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEEcCCCCeEEEecCCCcEEEEec
Confidence 46799999999999999999999974
No 44
>KOG0293|consensus
Probab=85.10 E-value=0.9 Score=39.78 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.6
Q ss_pred hhhccccccceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 18 LYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 18 LYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+|++--=|--=.|||-|||.+++|||-...|-+||.++
T Consensus 306 ~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 306 LYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred hcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 45554334445689999999999999999999999875
No 45
>KOG0318|consensus
Probab=85.00 E-value=0.93 Score=40.49 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=23.4
Q ss_pred eEEcCCCCeEEecccCCeEEEeecC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
++|||++.+|+|||-+..+.||...
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEcc
Confidence 3999999999999999999999875
No 46
>KOG0318|consensus
Probab=84.80 E-value=1.1 Score=40.03 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=26.1
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
|-+.||||+++++|-|=.-..+|||...
T Consensus 239 falsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 239 FALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred EEEEECCCCceEEEecCCceEEEEEeec
Confidence 6799999999999999999999999864
No 47
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=84.73 E-value=0.79 Score=42.44 Aligned_cols=31 Identities=16% Similarity=0.476 Sum_probs=25.7
Q ss_pred cceeeEEcCCCCeEEeccc------CCeEEEeecCCC
Q psy13887 26 DKFEVCWSGTDSAIMTGSY------NNFFRMFDRINK 56 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSY------nn~F~ifd~~~~ 56 (107)
.+-.++|.|||.++++.|. .-.||||+|++.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~ 247 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE 247 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce
Confidence 3456799999999999998 257999999863
No 48
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.63 E-value=1.4 Score=37.58 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=38.2
Q ss_pred ccchHHHHHhhhhhhhccccccceeeEEcCCC------CeEEecccCCeEEEeecCCC----cceeEeee
Q psy13887 5 PQVHEYLRSKLCSLYENDCIFDKFEVCWSGTD------SAIMTGSYNNFFRMFDRINK----RDATLEAA 64 (107)
Q Consensus 5 ~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~------~~v~TGSYnn~F~ifd~~~~----~~~~LeAs 64 (107)
|++.|.-..++. ++.-||..-+|...=+ ..|++|||++..|||..... .++.||..
T Consensus 4 Fk~rewWst~~~----~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~ 69 (418)
T PF14727_consen 4 FKTREWWSTKCG----ENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ 69 (418)
T ss_pred ccchheeeccCC----CCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe
Confidence 555566655554 2566888777665433 48999999999999998642 25666644
No 49
>PTZ00420 coronin; Provisional
Probab=84.38 E-value=1.6 Score=38.51 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=25.7
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
..++||+||+.++||+.++.++|||...+
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 35799999999999999999999997654
No 50
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.96 E-value=1.8 Score=23.90 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=16.4
Q ss_pred cceeeEEcCCCCeEEecccC---CeEEEe
Q psy13887 26 DKFEVCWSGTDSAIMTGSYN---NFFRMF 51 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSYn---n~F~if 51 (107)
+-+...|||||++|+=.|.- +.+.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567999999998755443 455554
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=83.41 E-value=1.4 Score=38.97 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.8
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.++|++||.+++|||.++.++||+..
T Consensus 488 ~i~fs~dg~~latgg~D~~I~iwd~~ 513 (793)
T PLN00181 488 AIGFDRDGEFFATAGVNKKIKIFECE 513 (793)
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECC
Confidence 46899999999999999999999864
No 52
>KOG4328|consensus
Probab=83.03 E-value=1.1 Score=39.25 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=23.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeec
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDR 53 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~ 53 (107)
..++||+|..++|-+|.|.+||||.
T Consensus 374 sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred eeEEcCCCCceEeeccCCceEEeec
Confidence 3689999999999999999999997
No 53
>PTZ00420 coronin; Provisional
Probab=82.46 E-value=1.7 Score=38.29 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=24.2
Q ss_pred eeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAI-MTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~~ 56 (107)
.|+|+|++..+ +|||+++.++|||...+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg 158 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENE 158 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCC
Confidence 56999999876 69999999999998654
No 54
>KOG0286|consensus
Probab=81.23 E-value=1.1 Score=37.65 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.3
Q ss_pred ceee-EEcCCCCeEEecccCCeEEEe
Q psy13887 27 KFEV-CWSGTDSAIMTGSYNNFFRMF 51 (107)
Q Consensus 27 KFec-~~sgd~~~v~TGSYnn~F~if 51 (107)
+-.| ..||||..|.|||+..+.|||
T Consensus 317 RvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 317 RVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred eeEEEEECCCCcEEEecchhHheeec
Confidence 4455 789999999999999999998
No 55
>KOG0280|consensus
Probab=80.37 E-value=1.3 Score=37.19 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.0
Q ss_pred CCCCeEEecccCCeEEEeecCC
Q psy13887 34 GTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 34 gd~~~v~TGSYnn~F~ifd~~~ 55 (107)
|+.-+|+||||..+.|++|..+
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred CCCceEEEeccccceeeeehhc
Confidence 4667999999999999999753
No 56
>KOG2096|consensus
Probab=80.06 E-value=2.1 Score=36.60 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=29.1
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCCcceeEeeecccc
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIA 68 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~ 68 (107)
.|||++..+++|-|=++.+||||. |+..|+.-+|.
T Consensus 284 ~aFsn~S~r~vtvSkDG~wriwdt----dVrY~~~qDpk 318 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVSKDGKWRIWDT----DVRYEAGQDPK 318 (420)
T ss_pred eeeCCCcceeEEEecCCcEEEeec----cceEecCCCch
Confidence 599999999999999999999995 45666665554
No 57
>KOG1273|consensus
Probab=79.61 E-value=3.8 Score=35.00 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=24.7
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+|||+||+-++|.|=+|...+||.-.+
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCC
Confidence 599999999999999999999997643
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=79.29 E-value=3.3 Score=29.96 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.7
Q ss_pred eeEEcCCCCeE-EecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAI-MTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v-~TGSYnn~F~ifd~~~~ 56 (107)
.++|++||+.+ ++++.++.+++|+..+.
T Consensus 35 ~l~~~~dg~~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 35 GITLSKDGKLLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred ceEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 47999999976 78899999999997653
No 59
>KOG0291|consensus
Probab=78.70 E-value=2.6 Score=39.27 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=27.2
Q ss_pred ccceee-EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 25 FDKFEV-CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 25 FDKFec-~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
|+.--| +.||||+.|+||+=++.++||+..++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG 382 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCc
Confidence 444455 89999999999999999999998763
No 60
>KOG0263|consensus
Probab=78.58 E-value=2.4 Score=38.75 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=25.0
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+++||+|+++++|+=.+.++|||..++
T Consensus 583 l~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 583 LAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred EEEcCCCceEeecccCCcEEEEEcCCC
Confidence 489999999999999999999998764
No 61
>KOG0641|consensus
Probab=78.31 E-value=2.7 Score=34.81 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.||||+|..|+|||-+.++.+..-+.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~ 120 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNA 120 (350)
T ss_pred EEecCccCeEEecCCCceEEEEeccc
Confidence 49999999999999999999876553
No 62
>KOG0315|consensus
Probab=77.19 E-value=4.5 Score=33.57 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
-.|-+|||+++++|.|-.-...||...+
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCC
Confidence 3688999999999999999999998754
No 63
>KOG2055|consensus
Probab=76.44 E-value=2.5 Score=37.27 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.6
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
..|.|.+|++++|||-.+.+-||+.++
T Consensus 392 s~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 392 SLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eeeecCCCceEEeccCcceEEEeccch
Confidence 569999999999999999999999764
No 64
>KOG1445|consensus
Probab=75.78 E-value=3.1 Score=38.62 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=27.5
Q ss_pred ccccccceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 21 NDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 21 ND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
-|-|| ..+|||||++++|=.-++.+|||....
T Consensus 720 tdqIf---~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 720 TDQIF---GIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred cCcee---EEEECCCCcceeeeecCceEEEeCCCC
Confidence 35665 589999999999999999999997654
No 65
>KOG2048|consensus
Probab=75.17 E-value=4 Score=37.24 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=27.4
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCCcc
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKRD 58 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~~ 58 (107)
+.+.|+|+|.+|++||=++.+||||...++.
T Consensus 158 Lslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 158 LSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred EEEEecCCccEEEecccCceEEEEEcCCCce
Confidence 5689999999999999999999999876544
No 66
>KOG0283|consensus
Probab=74.88 E-value=2.9 Score=38.29 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=23.4
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+-||+||+++|||+-++-+|||....
T Consensus 273 mKFS~DGKyLAsaGeD~virVWkVie 298 (712)
T KOG0283|consen 273 MKFSHDGKYLASAGEDGVIRVWKVIE 298 (712)
T ss_pred EEeCCCCceeeecCCCceEEEEEEec
Confidence 57899999999999999999997654
No 67
>KOG0645|consensus
Probab=74.07 E-value=5.9 Score=33.03 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=24.9
Q ss_pred ceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 27 KFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
==-|.|-|.-..++++||.|.+++|....
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecC
Confidence 33467999889999999999999998873
No 68
>KOG0772|consensus
Probab=73.97 E-value=3.3 Score=37.23 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.6
Q ss_pred EEcCCCCeEEecccCCeEEEeecCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.+.|.|.+++||||.+.++.||-++
T Consensus 174 ~~Dp~GaR~~sGs~Dy~v~~wDf~g 198 (641)
T KOG0772|consen 174 AVDPSGARFVSGSLDYTVKFWDFQG 198 (641)
T ss_pred eecCCCceeeeccccceEEEEeccc
Confidence 5678899999999999999999876
No 69
>KOG0263|consensus
Probab=73.41 E-value=4 Score=37.41 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=32.7
Q ss_pred HHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCCcc
Q psy13887 11 LRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRD 58 (107)
Q Consensus 11 Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~~ 58 (107)
||--.|-|=+-|| |.+-|+..|++|||=.-++|+||..++.-
T Consensus 528 lRifaghlsDV~c------v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 528 LRIFAGHLSDVDC------VSFHPNSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred hhhhcccccccce------EEECCcccccccCCCCceEEEEEcCCCcE
Confidence 5555555555555 58999999999999999999999876533
No 70
>KOG0286|consensus
Probab=73.38 E-value=5.2 Score=33.70 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=25.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.|++||.|+.|+.|+-+|.--||+...
T Consensus 102 tCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 102 TCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEEECCCCCeEEecCcCceeEEEeccc
Confidence 599999999999999999999999763
No 71
>PRK01742 tolB translocation protein TolB; Provisional
Probab=72.75 E-value=5.7 Score=32.62 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.6
Q ss_pred eeeEEcCCCCeEEecccCC---eEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNN---FFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn---~F~ifd~~~~ 56 (107)
...+|||||++++..||.+ .+.+|+..++
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg 238 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG 238 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCC
Confidence 4579999999999999975 5888887654
No 72
>KOG0282|consensus
Probab=70.37 E-value=4.8 Score=35.51 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=24.9
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.|.+||||+++++|+=++..-+||-.+
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechh
Confidence 578999999999999999999999764
No 73
>KOG0278|consensus
Probab=70.14 E-value=1 Score=37.51 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=25.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
-|+||-|..+++||+...+.|||+-+.
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccC
Confidence 489999999999999999999999764
No 74
>KOG0268|consensus
Probab=68.36 E-value=5 Score=34.68 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=32.9
Q ss_pred hhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 14 KLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 14 kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+--|.|-+--.=-=|-+.||-|.++|+.||=..++|+|-...
T Consensus 305 ~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 305 HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 334555554444568899999999999999999999997653
No 75
>KOG0643|consensus
Probab=67.68 E-value=9.4 Score=31.97 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=25.8
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
+-|.++-+.+++||||=+|..++||..++.
T Consensus 56 W~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 56 WCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred EEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 456778889999999999999999998653
No 76
>KOG0296|consensus
Probab=66.87 E-value=5.6 Score=34.17 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=24.6
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
++.|||++++||.=++.+++|+..+++
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCc
Confidence 789999999999999999999987653
No 77
>KOG0296|consensus
Probab=66.52 E-value=7.4 Score=33.48 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=25.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.|.||-||.+++||.-++.++||....+
T Consensus 111 ~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 111 CCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred EEEEccCceEEEecCCCccEEEEEcccC
Confidence 4689999999999999999999998754
No 78
>KOG1407|consensus
Probab=66.29 E-value=4.8 Score=33.53 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.8
Q ss_pred eEEcCCCCeEEecccCCeEEEeecC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
+.++|+|++++|||=+-....||.+
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVD 219 (313)
T ss_pred EEECCCCceEeeccccceeeccChh
Confidence 3789999999999999999999875
No 79
>KOG0278|consensus
Probab=66.09 E-value=8 Score=32.32 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=24.3
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
-+||||..-+.||-++.+|+|...++
T Consensus 274 rFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 274 RFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EECCCCceeeccCCCceEEEEEecCC
Confidence 79999999999999999999998764
No 80
>KOG2919|consensus
Probab=65.71 E-value=5.9 Score=33.97 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.7
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.|-|||||+.|++-|=.|..++|..-
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP 79 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLP 79 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecC
Confidence 48899999999999999999999753
No 81
>KOG0647|consensus
Probab=65.27 E-value=7.2 Score=32.95 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=24.0
Q ss_pred ccccccceeeEEcC-CCCeEEecccCCeEEEeecCC
Q psy13887 21 NDCIFDKFEVCWSG-TDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 21 ND~IFDKFec~~sg-d~~~v~TGSYnn~F~ifd~~~ 55 (107)
+|+|= ++.||| .+..++.||++|.+|||+.+.
T Consensus 27 ~DsIS---~l~FSP~~~~~~~A~SWD~tVR~wevq~ 59 (347)
T KOG0647|consen 27 EDSIS---ALAFSPQADNLLAAGSWDGTVRIWEVQN 59 (347)
T ss_pred ccchh---eeEeccccCceEEecccCCceEEEEEec
Confidence 45553 468999 555555999999999998764
No 82
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=64.41 E-value=10 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=23.3
Q ss_pred eeeEEcCCCCeEEecccCC---eEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNN---FFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn---~F~ifd~~~~ 56 (107)
+...|||||++++.++|.+ .+.+|+..++
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g 224 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATG 224 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 4568999999999988764 7888987654
No 83
>KOG0973|consensus
Probab=64.12 E-value=7.2 Score=36.85 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.8
Q ss_pred eeE-EcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVC-WSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~-~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.|- |||||++++.||=+..+.||++.
T Consensus 73 ~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred eEEEECCCCCeEeeccCcceEEEeeec
Confidence 454 99999999999999999999997
No 84
>KOG0772|consensus
Probab=63.91 E-value=4.6 Score=36.35 Aligned_cols=26 Identities=15% Similarity=0.459 Sum_probs=24.2
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.|+||+||..|++|--++.+.||+..
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKG 347 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecC
Confidence 59999999999999999999999953
No 85
>KOG0319|consensus
Probab=63.11 E-value=10 Score=35.11 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=28.8
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccc
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREI 67 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~ 67 (107)
-+.++|+++-|+||||+.+-.||+-. +.+|++.-.-
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le---~~~l~~vLsG 503 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLE---QLRLLGVLSG 503 (775)
T ss_pred ceEecCCCceEEecccccceeeeccc---CceEEEEeeC
Confidence 46899999999999999999999875 4555554433
No 86
>KOG1832|consensus
Probab=63.00 E-value=9 Score=37.02 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=26.0
Q ss_pred ceee-EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 27 KFEV-CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 27 KFec-~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
-|.| ++|++..++|-|+.++.+++|...++
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG 1133 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG 1133 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccCc
Confidence 4556 89999999999999999999987653
No 87
>KOG4497|consensus
Probab=62.77 E-value=11 Score=32.50 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=30.1
Q ss_pred eEEcCCCCeEE-ecccCCeEEEeecCCCcceeEeeeccccC
Q psy13887 30 VCWSGTDSAIM-TGSYNNFFRMFDRINKRDATLEAAREIAK 69 (107)
Q Consensus 30 c~~sgd~~~v~-TGSYnn~F~ifd~~~~~~~~LeAsk~~~k 69 (107)
.||||||++|+ |.++.--+-||.-.++...-|.--|...|
T Consensus 97 ~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 97 ISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK 137 (447)
T ss_pred eeECCCcceEeeeecceeEEEEEEeccceeEEecccccCce
Confidence 59999998876 56688888899988776666665555443
No 88
>KOG2315|consensus
Probab=62.72 E-value=8.5 Score=34.49 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEcCCCCeEEecccC------CeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYN------NFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYn------n~F~ifd~~~ 55 (107)
|.|||||.++||.+=. |-++||.-.+
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 6799999999999865 8888887765
No 89
>KOG0771|consensus
Probab=62.41 E-value=9.3 Score=32.92 Aligned_cols=42 Identities=19% Similarity=0.398 Sum_probs=32.1
Q ss_pred HHHhhhhhhhccccccceee-EEcCCCCeEEecccCCeEEEee
Q psy13887 11 LRSKLCSLYENDCIFDKFEV-CWSGTDSAIMTGSYNNFFRMFD 52 (107)
Q Consensus 11 Lr~kLcdLYEND~IFDKFec-~~sgd~~~v~TGSYnn~F~ifd 52 (107)
.+...-+.|--+--|++=-| |+++||+.++||.=.+.+|||+
T Consensus 130 ~~~~~a~v~~~l~~~g~~k~vaf~~~gs~latgg~dg~lRv~~ 172 (398)
T KOG0771|consen 130 NAETAANVYQKLVDFGQQKVVAFNGDGSKLATGGTDGTLRVWE 172 (398)
T ss_pred chhhhhhHhHHHhhcCcceEEEEcCCCCEeeeccccceEEEEe
Confidence 34455555655555554444 9999999999999999999998
No 90
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=62.06 E-value=10 Score=31.19 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=22.2
Q ss_pred eeeEEcCCCCeEEeccc-CCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSY-NNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSY-nn~F~ifd~~~ 55 (107)
..+++|+||++++++.| .|.+.|+|..+
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred ceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 35689999999999987 79999999765
No 91
>KOG0646|consensus
Probab=61.54 E-value=9 Score=33.68 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.8
Q ss_pred ee-EEcCCCCeEEecccCCeEEEeec
Q psy13887 29 EV-CWSGTDSAIMTGSYNNFFRMFDR 53 (107)
Q Consensus 29 ec-~~sgd~~~v~TGSYnn~F~ifd~ 53 (107)
.| .+|+||+++.|||=++.++||..
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEE
Confidence 44 89999999999999999999975
No 92
>KOG0305|consensus
Probab=60.45 E-value=8.4 Score=33.76 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=30.2
Q ss_pred hhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 14 KLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 14 kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.||+++|+ +=--+.|+++|++++.|-=++.+.|||...
T Consensus 211 ~l~~~~~~----~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 211 ELCSFGEE----LVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred EeEecCCC----ceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 46776632 224568999999999999999999999753
No 93
>KOG0649|consensus
Probab=60.34 E-value=9.6 Score=31.74 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=30.4
Q ss_pred CCCCeEEecccCCeEEEeecCCCc-ceeEeeeccccCcc
Q psy13887 34 GTDSAIMTGSYNNFFRMFDRINKR-DATLEAAREIAKPK 71 (107)
Q Consensus 34 gd~~~v~TGSYnn~F~ifd~~~~~-~~~LeAsk~~~k~k 71 (107)
-...+|+||+=++..||||+.++. --+||.-+.+.+.|
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 345789999999999999998754 45889888777644
No 94
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=60.20 E-value=14 Score=30.49 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=25.2
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
-+|||||+.-++-..=++.++|||..+.
T Consensus 48 kl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 48 KLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred EEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 3799999999999999999999998753
No 95
>KOG0640|consensus
Probab=59.59 E-value=8.5 Score=33.02 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.6
Q ss_pred EEcCCCCeEEecccCCeEEEeecC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.+|+||+.|+|||=+-.+.|+|..
T Consensus 119 afs~DG~lvATGsaD~SIKildve 142 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVE 142 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehh
Confidence 799999999999999999999975
No 96
>KOG2096|consensus
Probab=59.35 E-value=11 Score=32.46 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=23.5
Q ss_pred eEEcCCCCeEEecccCCeEEEeecC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
+|||.||++++|-|=+..+|||+..
T Consensus 92 ~~FsSdGK~lat~~~Dr~Ir~w~~~ 116 (420)
T KOG2096|consen 92 VAFSSDGKKLATISGDRSIRLWDVR 116 (420)
T ss_pred eEEcCCCceeEEEeCCceEEEEecc
Confidence 5999999999999999999999974
No 97
>KOG0265|consensus
Probab=58.73 E-value=8 Score=32.61 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=26.2
Q ss_pred ceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 27 KFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
...|.|||++..|..||=+.+..|||..+
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cceeeccCCCCccccccccceEEEeeccc
Confidence 35699999999999999999999999764
No 98
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=58.39 E-value=23 Score=21.27 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.2
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
++|||...-|+.|+=++.+.||-.+.
T Consensus 17 ~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 17 MSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEECCCCCEEEEEECCCeEEEEECCC
Confidence 59999999999999999999997643
No 99
>PRK02889 tolB translocation protein TolB; Provisional
Probab=58.37 E-value=15 Score=30.26 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=22.3
Q ss_pred eeEEcCCCCeEEecccCC---eEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNN---FFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn---~F~ifd~~~~ 56 (107)
..+|||||+.++..||.+ .+.+++..++
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g 230 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATG 230 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 469999999999999864 4777887654
No 100
>KOG1063|consensus
Probab=58.27 E-value=7.4 Score=35.87 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=25.3
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.|.|+||+.+++|+|=+..+.||.....
T Consensus 623 dcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EcccCcccceeEEecCCceEEEEeccCc
Confidence 5999999999999999999999987543
No 101
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=57.98 E-value=5 Score=32.97 Aligned_cols=23 Identities=22% Similarity=0.509 Sum_probs=18.2
Q ss_pred cccceeeEEcCCCCeEEecccCCeEE
Q psy13887 24 IFDKFEVCWSGTDSAIMTGSYNNFFR 49 (107)
Q Consensus 24 IFDKFec~~sgd~~~v~TGSYnn~F~ 49 (107)
+-+||=.. ||..|+||||+=.+-
T Consensus 228 ~~eKF~lv---D~~~V~~GSYSFtWs 250 (284)
T PF07894_consen 228 LKEKFMLV---DGDKVISGSYSFTWS 250 (284)
T ss_pred ccceeEEE---ecccccccccceeec
Confidence 45788777 999999999976544
No 102
>KOG0641|consensus
Probab=57.52 E-value=12 Score=31.15 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=24.1
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
-+-|||-.-+++||||++.+++-|-++
T Consensus 278 ~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 278 CVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EEEeCCCceEEEEecccceEEEeeccc
Confidence 357999999999999999999998765
No 103
>KOG1539|consensus
Probab=57.12 E-value=13 Score=34.92 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=24.7
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.|+|+||+.++|.|-+..+|+||.-++
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 599999999999999999999997653
No 104
>KOG4532|consensus
Probab=56.97 E-value=12 Score=31.42 Aligned_cols=56 Identities=20% Similarity=0.110 Sum_probs=41.2
Q ss_pred hhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccccCccccCC
Q psy13887 18 LYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAKPKTLLR 75 (107)
Q Consensus 18 LYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~k~k~~~~ 75 (107)
.||-|--=-.|-..||-.+.++++|+.++..-|||... ..|+-|.++..||...+.
T Consensus 197 ~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~--~~tpm~~~sstrp~hnGa 252 (344)
T KOG4532|consen 197 IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN--MATPMAEISSTRPHHNGA 252 (344)
T ss_pred eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc--cccchhhhcccCCCCCCc
Confidence 44544444578899999999999999999999999743 445555566666654443
No 105
>PRK05137 tolB translocation protein TolB; Provisional
Probab=56.01 E-value=22 Score=29.11 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=22.7
Q ss_pred eeeEEcCCCCeEEecccC---CeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYN---NFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYn---n~F~ifd~~~~ 56 (107)
...+|||||+.|+..||. ..+.+++..++
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g 236 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETG 236 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCC
Confidence 357899999999999985 46777886554
No 106
>KOG0269|consensus
Probab=54.90 E-value=16 Score=34.18 Aligned_cols=28 Identities=14% Similarity=0.431 Sum_probs=25.5
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
|-|.|+|++..++||+=+..++||+..+
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccC
Confidence 4578999999999999999999999874
No 107
>KOG1408|consensus
Probab=54.71 E-value=15 Score=34.69 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=33.6
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC-----------cceeEeeeccccCccc
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK-----------RDATLEAAREIAKPKT 72 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~-----------~~~~LeAsk~~~k~k~ 72 (107)
+|+||||+|++.|---++.|||+-..- +-..||-++.....|.
T Consensus 465 ~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 465 LAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred EEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHh
Confidence 399999999999999999999998642 2347777776655443
No 108
>KOG1963|consensus
Probab=54.07 E-value=8.4 Score=35.79 Aligned_cols=25 Identities=16% Similarity=0.510 Sum_probs=23.0
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
||||+|| .++|-||.|.+-|||-..
T Consensus 515 ~~fs~dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 515 LCFSQDG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred hhhcCCC-cEEEEecCCEEEEecCCC
Confidence 6999999 889999999999999865
No 109
>KOG0639|consensus
Probab=53.63 E-value=13 Score=33.61 Aligned_cols=27 Identities=7% Similarity=0.135 Sum_probs=25.2
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.|-+++||+.+++|+|...+.|||-+.
T Consensus 470 SckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 470 SCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred eeEecCCCceEEeccccceeeeeeccC
Confidence 588999999999999999999999874
No 110
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=53.07 E-value=20 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=24.2
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
+|++++..+++++.++.+++|+.....
T Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 248 SFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred eECCCCCEEEEecCCCcEEEeeecCCC
Confidence 899999999999999999999987544
No 111
>PF03622 IBV_3B: IBV 3B protein ; InterPro: IPR005295 These proteins are the product of ORF 3B from Infectious bronchitis virus). Currently, the function of this protein remains unknown [].
Probab=52.99 E-value=8.1 Score=25.38 Aligned_cols=13 Identities=62% Similarity=1.116 Sum_probs=10.5
Q ss_pred ccccccceeeEEc
Q psy13887 21 NDCIFDKFEVCWS 33 (107)
Q Consensus 21 ND~IFDKFec~~s 33 (107)
|=.|||-||||.=
T Consensus 30 ~t~iFDPFE~cyy 42 (64)
T PF03622_consen 30 NTEIFDPFEVCYY 42 (64)
T ss_pred hhhhcCCeeEEEE
Confidence 4579999999953
No 112
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.68 E-value=18 Score=29.63 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.4
Q ss_pred eeeEEcCCCCeEEecccCC---eEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNN---FFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn---~F~ifd~~~~ 56 (107)
....|||||++|+..||.+ .+.+++..++
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g 238 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATG 238 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 4568999999999999865 4667776544
No 113
>KOG0281|consensus
Probab=52.65 E-value=12 Score=32.57 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEcCCCCeEEecccCCeEEEeecCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
|+.=|++.|+.|.|++.++|||-+.
T Consensus 405 ciRFd~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 405 CIRFDNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred heeecCceeeeccccceEEEEeccc
Confidence 4555778899999999999998654
No 114
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=51.31 E-value=27 Score=18.40 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEe
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMF 51 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~if 51 (107)
.+|++++|.-++|=+.|+-+++|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 36788899999999888888776
No 115
>KOG0265|consensus
Probab=50.46 E-value=22 Score=30.06 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.9
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
|+.|+.|+++|++.|=+..|++||.+++
T Consensus 95 ~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 95 ELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred eeeeccCCCEEEEecCCceEEEEecccc
Confidence 6789999999999999999999998764
No 116
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=50.31 E-value=22 Score=27.49 Aligned_cols=26 Identities=12% Similarity=0.104 Sum_probs=22.7
Q ss_pred eeEEcCCCCeEEeccc-CCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSY-NNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSY-nn~F~ifd~~ 54 (107)
-+++++||+.+.+++| +|.+.||+.+
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 5689999999999888 7889999875
No 117
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=50.16 E-value=24 Score=27.23 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=22.7
Q ss_pred eeeEEcCCCCeEEeccc-CCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSY-NNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSY-nn~F~ifd~~~ 55 (107)
..++++|||+++.+.++ .|.+.||+...
T Consensus 129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred cEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 56789999999966555 59999999865
No 118
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=49.74 E-value=27 Score=18.05 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.1
Q ss_pred CeEEecccCCeEEEeecCC
Q psy13887 37 SAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 37 ~~v~TGSYnn~F~ifd~~~ 55 (107)
..|.+|+.++.++.+|...
T Consensus 7 ~~v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKT 25 (33)
T ss_pred CEEEEEcCCCEEEEEEccc
Confidence 3688899999999999754
No 119
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.46 E-value=19 Score=32.17 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.9
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.-++|.|+|..|+.||=.+.+.+||++
T Consensus 303 ~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 303 TLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred eEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 346899999999999999999999987
No 120
>KOG0295|consensus
Probab=48.35 E-value=21 Score=30.79 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=29.1
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC-cceeEee
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK-RDATLEA 63 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~-~~~~LeA 63 (107)
++.+||-|++|+.-.=+...||||-.+. +..+|||
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a 374 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA 374 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC
Confidence 5789999999999999999999998764 3455553
No 121
>PRK01742 tolB translocation protein TolB; Provisional
Probab=47.61 E-value=17 Score=29.78 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCeEEecccCCeEEEee
Q psy13887 27 KFEVCWSGTDSAIMTGSYNNFFRMFD 52 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSYnn~F~ifd 52 (107)
...+.|||||+.|+++|..+...+|.
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEE
Confidence 34578999999999988877666654
No 122
>KOG0293|consensus
Probab=46.88 E-value=27 Score=30.91 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=24.9
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.-|.+|++|++++|+|=...--||.....
T Consensus 228 Wfl~FS~nGkyLAsaSkD~Taiiw~v~~d 256 (519)
T KOG0293|consen 228 WFLQFSHNGKYLASASKDSTAIIWIVVYD 256 (519)
T ss_pred EEEEEcCCCeeEeeccCCceEEEEEEecC
Confidence 35799999999999999999999987543
No 123
>KOG0275|consensus
Probab=43.97 E-value=26 Score=30.44 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=23.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
|..+++||.+|++.|-++.++||+..+
T Consensus 353 ~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 353 EATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred ceEEcCCCCeEEEecCCccEEEecCcc
Confidence 456689999999999999999998653
No 124
>KOG1063|consensus
Probab=43.91 E-value=36 Score=31.59 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=24.0
Q ss_pred eeeEEcCCCCeEEecccCCeEEEee
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFD 52 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd 52 (107)
|.|-|||++..|++=||.+-||.|.
T Consensus 320 ~g~lw~~n~~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 320 WGGLWSPNSNVIIAHGRTGGFHLWK 344 (764)
T ss_pred eeEEEcCCCCEEEEecccCcEEEEe
Confidence 6799999999999999999999998
No 125
>KOG2111|consensus
Probab=43.12 E-value=35 Score=29.00 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.8
Q ss_pred EEcCCCCeEEecccCC-eEEEeecCCC
Q psy13887 31 CWSGTDSAIMTGSYNN-FFRMFDRINK 56 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn-~F~ifd~~~~ 56 (107)
.++-+|..|+|+|-++ ++||||...+
T Consensus 188 ~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 188 ALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred EEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 7889999999999998 5799998754
No 126
>PRK00178 tolB translocation protein TolB; Provisional
Probab=43.12 E-value=41 Score=27.15 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=20.8
Q ss_pred eeeEEcCCCCeEEecccCC---eEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNN---FFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn---~F~ifd~~~ 55 (107)
....|||||++|+..||.+ .+.+++..+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~ 232 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT 232 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCC
Confidence 4559999999999988874 355566544
No 127
>KOG4497|consensus
Probab=43.10 E-value=12 Score=32.26 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=22.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.+.|||.++.++-|||+...||-.+-
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred EEEeccccceEEeeccchhhhhhcee
Confidence 36899999999999999888887654
No 128
>PRK05137 tolB translocation protein TolB; Provisional
Probab=41.96 E-value=32 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=19.8
Q ss_pred eeEEcCCCCeEE-ecccCCeEEEe--ecCC
Q psy13887 29 EVCWSGTDSAIM-TGSYNNFFRMF--DRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~-TGSYnn~F~if--d~~~ 55 (107)
...|||||++++ +.+.++..+|| +..+
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 568999999875 77777776766 5443
No 129
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=41.76 E-value=70 Score=21.01 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=26.5
Q ss_pred hhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 14 KLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 14 kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.|+.+-|.=+.=.+++|...+|++-. ++|||..++
T Consensus 3 elr~iiE~aflPl~C~ct~~~~~smt--------vrl~d~~sg 37 (69)
T PF07865_consen 3 ELRQIIEQAFLPLRCECTIAPDGSMT--------VRLFDPASG 37 (69)
T ss_pred HHHHHHHHcCCCceeEEEECCCCcEE--------EEEecCCCC
Confidence 35566665555589999999998765 899988764
No 130
>PRK04792 tolB translocation protein TolB; Provisional
Probab=41.61 E-value=40 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=21.1
Q ss_pred eeEEcCCCCeEEecccCC---eEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNN---FFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn---~F~ifd~~~~ 56 (107)
...|||||+.|+-.|+.+ .+.+++..++
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg 252 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ 252 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 569999999999888754 4566666543
No 131
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=41.38 E-value=13 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.494 Sum_probs=18.6
Q ss_pred hhhccccccceee-EEcCCCCeEEecccCC
Q psy13887 18 LYENDCIFDKFEV-CWSGTDSAIMTGSYNN 46 (107)
Q Consensus 18 LYEND~IFDKFec-~~sgd~~~v~TGSYnn 46 (107)
.||. .||+.... -|||||++|+.-.+|.
T Consensus 94 vyeE-Ev~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 94 VYEE-EVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp HHHH-HTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred eccc-cccccccceEECCCCCEEEEEEECC
Confidence 4664 36776665 8999999998665543
No 132
>KOG0281|consensus
Probab=41.36 E-value=33 Score=30.01 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.4
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.|.-=|.+.|++||-+..++|||.+++
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccCC
Confidence 466678899999999999999999865
No 133
>KOG0640|consensus
Probab=41.25 E-value=27 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.3
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+-.|+.|+--+||||++-+++||..+
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred EEecCCccEEEEeccCCcEEeecccc
Confidence 45688889999999999999999653
No 134
>KOG0644|consensus
Probab=41.18 E-value=13 Score=35.40 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=39.1
Q ss_pred CCCcccchHHHHHhhhhhhhccccccceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 1 MFPSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 1 ~v~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
||+-++-|--|+..+...|= .|||+ .|.+|.|||=+-++.||..++
T Consensus 176 mvqkmk~ikrLlgH~naVyc--a~fDr-------tg~~Iitgsdd~lvKiwS~et 221 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYC--AIFDR-------TGRYIITGSDDRLVKIWSMET 221 (1113)
T ss_pred HHHHHHHHHHHHhhhhheee--eeecc-------ccceEeecCccceeeeeeccc
Confidence 67777888888888888887 67775 689999999999999998654
No 135
>KOG1920|consensus
Probab=41.17 E-value=30 Score=33.88 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=23.1
Q ss_pred ceeeEEcCCCCeEEeccc-----CCeEEEeecCC
Q psy13887 27 KFEVCWSGTDSAIMTGSY-----NNFFRMFDRIN 55 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSY-----nn~F~ifd~~~ 55 (107)
|=.++|.|||.++++-+| -..|+|||+++
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg 231 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDREG 231 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEecccc
Confidence 445899999999999443 26899999984
No 136
>PRK02889 tolB translocation protein TolB; Provisional
Probab=40.50 E-value=28 Score=28.64 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.4
Q ss_pred eeEEcCCCCeEE-ecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIM-TGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~-TGSYnn~F~ifd~~ 54 (107)
...|||||+.|+ +.+.++..+||..+
T Consensus 244 ~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 244 APAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred ceEECCCCCEEEEEEccCCCceEEEEE
Confidence 469999999886 78888888888653
No 137
>KOG0306|consensus
Probab=39.75 E-value=27 Score=32.86 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=22.8
Q ss_pred EEcCCCCeEEecccCCeEEEeecC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.+|+|++-++|||=+.++.||+.+
T Consensus 557 DIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 557 DISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred eccCCcCeEEeccCCCceEEeccc
Confidence 789999999999999999999876
No 138
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=38.90 E-value=51 Score=31.18 Aligned_cols=29 Identities=10% Similarity=0.197 Sum_probs=25.7
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
.+++++||+.+++-+.||.+|+|+...+.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 46999999999999999999999987643
No 139
>KOG0305|consensus
Probab=38.75 E-value=25 Score=30.88 Aligned_cols=26 Identities=19% Similarity=0.496 Sum_probs=23.6
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
...|++|+.+++.|+=+|...|||..
T Consensus 306 gLkws~d~~~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 306 GLKWSPDGNQLASGGNDNVVFIWDGL 331 (484)
T ss_pred eeEECCCCCeeccCCCccceEeccCC
Confidence 34799999999999999999999983
No 140
>KOG1036|consensus
Probab=38.30 E-value=46 Score=28.03 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=27.5
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCCcceeEeee
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAA 64 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAs 64 (107)
.||+-+ .++++||+=.+.++.||.+++...+|..-
T Consensus 59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeeccC-CceEEEeccCceEEEEEecCCcceeeccC
Confidence 477774 78999999999999999987655554443
No 141
>KOG0274|consensus
Probab=38.13 E-value=32 Score=30.17 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=22.0
Q ss_pred EEcCCCCeEEecccCCeEEEeecC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
|...++..+++|||++.+.||+..
T Consensus 336 ~v~~~~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 336 CVQLDEPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCEEEEEecCceEEEEEhh
Confidence 677789999999999999999976
No 142
>KOG0316|consensus
Probab=37.90 E-value=44 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=23.9
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+.++-+.+.|+.||+....|+||+.+.
T Consensus 107 V~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 107 VRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred EEecCcceEEEeccccceeEEEEcccC
Confidence 577888899999999999999999753
No 143
>KOG0277|consensus
Probab=37.50 E-value=48 Score=27.69 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=32.6
Q ss_pred eEEcC-CCCeEEecccCCeEEEeecCC---------CcceeEeeeccccCcccc
Q psy13887 30 VCWSG-TDSAIMTGSYNNFFRMFDRIN---------KRDATLEAAREIAKPKTL 73 (107)
Q Consensus 30 c~~sg-d~~~v~TGSYnn~F~ifd~~~---------~~~~~LeAsk~~~k~k~~ 73 (107)
|.|+. ++.+++|+|++..+.+|+.+- .+++.++|-.+|.-+-..
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 44443 336799999999999999863 357889998888766443
No 144
>KOG0302|consensus
Probab=37.21 E-value=29 Score=30.26 Aligned_cols=28 Identities=21% Similarity=0.416 Sum_probs=0.0
Q ss_pred eeEEcC-CCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSG-TDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sg-d~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+.|||| -...++++|-...|||||..++
T Consensus 262 DLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred hhccCCccCceEEeeecCceEEEEEecCC
No 145
>KOG1446|consensus
Probab=36.62 E-value=72 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=25.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
++.+|.||.+++|-|-++..++||...+
T Consensus 19 sl~fs~~G~~litss~dDsl~LYd~~~g 46 (311)
T KOG1446|consen 19 SLDFSDDGLLLITSSEDDSLRLYDSLSG 46 (311)
T ss_pred EEEecCCCCEEEEecCCCeEEEEEcCCC
Confidence 4589999999999999999999998754
No 146
>KOG0306|consensus
Probab=36.37 E-value=40 Score=31.78 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=29.9
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCCcceeEeeeccccC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAK 69 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAsk~~~k 69 (107)
+.+|+|++|+++|-+-.+|+|.+. ..-+.||-.++..+
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~t-de~~~lEeekE~Er 678 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERT-DEILILEEEKEGER 678 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeecc-Ccceeeehhhhhhh
Confidence 789999999999999999999974 34456666555543
No 147
>KOG1332|consensus
Probab=36.11 E-value=44 Score=27.81 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCeEEecccCCeEEEeecCCCcceeEeee
Q psy13887 36 DSAIMTGSYNNFFRMFDRINKRDATLEAA 64 (107)
Q Consensus 36 ~~~v~TGSYnn~F~ifd~~~~~~~~LeAs 64 (107)
|++++|.|-+..++||+..+.....|+|.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~ 51 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAE 51 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeE
Confidence 78999999999999999876555455544
No 148
>KOG2139|consensus
Probab=35.97 E-value=48 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.400 Sum_probs=23.3
Q ss_pred eEEcCCCCeEEecccCC-eEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNN-FFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn-~F~ifd~~~~ 56 (107)
..|..||...+|.||.. .|+|||...+
T Consensus 201 mqwn~dgt~l~tAS~gsssi~iWdpdtg 228 (445)
T KOG2139|consen 201 MQWNEDGTILVTASFGSSSIMIWDPDTG 228 (445)
T ss_pred EEEcCCCCEEeecccCcceEEEEcCCCC
Confidence 58999999999999965 7999998654
No 149
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.68 E-value=59 Score=26.67 Aligned_cols=29 Identities=10% Similarity=-0.052 Sum_probs=20.3
Q ss_pred eeEEcCCCCeEEecccCC---eEEEeecCCCc
Q psy13887 29 EVCWSGTDSAIMTGSYNN---FFRMFDRINKR 57 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn---~F~ifd~~~~~ 57 (107)
..+|||||++|+..+..+ ...+|+..++.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 579999999998765543 35677765543
No 150
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=35.65 E-value=47 Score=27.88 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.3
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
.-++..|.|+.+|..+|.+.|.||..+.
T Consensus 47 ~~l~vDP~~R~i~v~a~e~~~~v~~l~~ 74 (504)
T PF10433_consen 47 QYLAVDPSGRCIAVSAYEGNFLVYPLNR 74 (504)
T ss_dssp -EEEE-TTSSEEEEEEBTTEEEEEE-SS
T ss_pred cEEEECCcCCEEEEEecCCeEEEEEecc
Confidence 4589999999999999999999998765
No 151
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=35.30 E-value=56 Score=30.90 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.9
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.+++++||..+++-+||+.+++||..+.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 5689999999999999999999997654
No 152
>PRK03629 tolB translocation protein TolB; Provisional
Probab=34.81 E-value=56 Score=26.99 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=20.3
Q ss_pred eeEEcCCCCeEEeccc---CCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSY---NNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSY---nn~F~ifd~~~~ 56 (107)
..+|||||+.++..|+ .....+++..++
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G 233 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANG 233 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence 4699999999997665 345677776543
No 153
>KOG2445|consensus
Probab=34.52 E-value=70 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred eEEcCCCCeEEecccCCeEEEeec
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDR 53 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~ 53 (107)
+.|..-|++++|+|-+..+.|||-
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~ 42 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDS 42 (361)
T ss_pred eeecccCceeeeccCCCcEEEEec
Confidence 577788999999999999999993
No 154
>KOG0308|consensus
Probab=33.99 E-value=44 Score=30.94 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=23.4
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
-.+.||.+++|||-++.+++||-+-+
T Consensus 220 l~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred EEcCCCCeEeecCCCceEEeeecccc
Confidence 57899999999999999999997654
No 155
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=32.93 E-value=1.1e+02 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=23.8
Q ss_pred eeEEcCCCCeEEeccc-CCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSY-NNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSY-nn~F~ifd~~~ 55 (107)
.+++++++..++.++- .+..++|+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 160 SLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred EEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 5799999999999985 99999999875
No 156
>PRK03629 tolB translocation protein TolB; Provisional
Probab=32.70 E-value=59 Score=26.85 Aligned_cols=20 Identities=5% Similarity=0.011 Sum_probs=16.4
Q ss_pred eeeEEcCCCCeEEecccCCe
Q psy13887 28 FEVCWSGTDSAIMTGSYNNF 47 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~ 47 (107)
....|||||+.|+..+..+.
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred CCceECCCCCEEEEEEcCCC
Confidence 35789999999999887654
No 157
>KOG0285|consensus
Probab=32.34 E-value=70 Score=27.99 Aligned_cols=41 Identities=27% Similarity=0.318 Sum_probs=30.1
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecC-CCcceeEeeecccc
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRI-NKRDATLEAAREIA 68 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~-~~~~~~LeAsk~~~ 68 (107)
+.+...+-+-+|+|||-+..++.||-. ++.-+||-+.+-.-
T Consensus 281 ~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 281 ASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred eeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee
Confidence 345556678899999999999999976 45566776654433
No 158
>KOG0316|consensus
Probab=31.49 E-value=64 Score=26.85 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=26.8
Q ss_pred ceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 27 KFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
|-+||++-.+.+|+.||=.+++=+||-..
T Consensus 230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred eeeeeecccceeEEeccCCceEEEEEecc
Confidence 67899999999999999999999999754
No 159
>KOG1407|consensus
Probab=31.38 E-value=52 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.502 Sum_probs=23.8
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
.++|+-||..++.||++.+..||...
T Consensus 25 Sv~wn~~g~~lasgs~dktv~v~n~e 50 (313)
T KOG1407|consen 25 SVAWNCDGTKLASGSFDKTVSVWNLE 50 (313)
T ss_pred EEEEcccCceeeecccCCceEEEEec
Confidence 47999999999999999999999765
No 160
>KOG2055|consensus
Probab=31.37 E-value=35 Score=30.32 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=38.0
Q ss_pred CcccchHHHHHhhhhhhhccccccceeeEEcCCCC-eEEecccCCeEEEeecCC
Q psy13887 3 PSPQVHEYLRSKLCSLYENDCIFDKFEVCWSGTDS-AIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 3 ~t~~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~-~v~TGSYnn~F~ifd~~~ 55 (107)
..|+|---..++|..+|=-+|=- +.||+.|+|. +|.|+|-.-++.+||...
T Consensus 238 rifqvDGk~N~~lqS~~l~~fPi--~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 238 RIFQVDGKVNPKLQSIHLEKFPI--QKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred EEEEecCccChhheeeeeccCcc--ceeeecCCCceEEEecccceEEEEeeccc
Confidence 45666666667777766533322 3469999999 999999999999999753
No 161
>KOG2321|consensus
Probab=30.98 E-value=54 Score=30.13 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.7
Q ss_pred eEEcCCCCeE-EecccCCeEEEeecCC
Q psy13887 30 VCWSGTDSAI-MTGSYNNFFRMFDRIN 55 (107)
Q Consensus 30 c~~sgd~~~v-~TGSYnn~F~ifd~~~ 55 (107)
+-.|+||+|+ +||-|-=-++|||.++
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlan 83 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLAN 83 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEccc
Confidence 4689999997 5999999999999874
No 162
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=30.79 E-value=30 Score=19.22 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=8.1
Q ss_pred eEEecccCCe
Q psy13887 38 AIMTGSYNNF 47 (107)
Q Consensus 38 ~v~TGSYnn~ 47 (107)
.+++|||.|.
T Consensus 7 Sv~~gSs~n~ 16 (27)
T PF12522_consen 7 SVAAGSSGNN 16 (27)
T ss_pred EEEeccccCC
Confidence 5789999876
No 163
>PRK01029 tolB translocation protein TolB; Provisional
Probab=30.70 E-value=81 Score=26.24 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=20.0
Q ss_pred eeEEcCCCCeEEecccC---CeEEEeecCCCc
Q psy13887 29 EVCWSGTDSAIMTGSYN---NFFRMFDRINKR 57 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYn---n~F~ifd~~~~~ 57 (107)
..+|||||+.|+..+.. ..+.+|+..++.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 56899999998865543 245667766543
No 164
>KOG0289|consensus
Probab=30.65 E-value=61 Score=28.78 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=23.7
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.+-|||.-+.||+=++.++|||..+.
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCc
Confidence 78999999999999999999997653
No 165
>KOG0284|consensus
Probab=30.65 E-value=79 Score=27.86 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=33.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC---------cceeEeeeccccC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK---------RDATLEAAREIAK 69 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~---------~~~~LeAsk~~~k 69 (107)
-|.|-|.-+-|++||=.|++.+||..++ ..+++++..++..
T Consensus 227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC
Confidence 4678888899999999999999998764 4567777777765
No 166
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=29.49 E-value=1.1e+02 Score=20.75 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=20.0
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCCcceeEee
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEA 63 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeA 63 (107)
||.|.||--.+-.-+.++...|-+ ..+.+|+
T Consensus 35 e~~W~GD~l~F~~~gv~G~l~V~~----d~v~v~v 65 (91)
T TIGR02610 35 ASHWEGDTLRIARSGVDGAVHLGP----QSIRVTA 65 (91)
T ss_pred EeEEeCCEEEEEEeeeeEEEEEcC----CeEEEEE
Confidence 999999876665555666666554 3455554
No 167
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=29.47 E-value=50 Score=30.77 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.2
Q ss_pred ceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 27 KFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
+|.|.-+-.+.+|+.||=.+-+|.||+.+
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g 607 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLG 607 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccc
Confidence 69996666667999999999999999865
No 168
>KOG2111|consensus
Probab=29.46 E-value=70 Score=27.22 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=25.6
Q ss_pred ceeeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 27 KFEVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 27 KFec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
=+...+|||++.++--|=.++.|||.-..
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 35679999999999999999999998653
No 169
>KOG0643|consensus
Probab=29.18 E-value=44 Score=28.13 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
..|+|+|..+++|||=++.=.+||..
T Consensus 195 d~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 195 DLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred cccccCCcceEEecccCccceeeecc
Confidence 36899999999999999999999964
No 170
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=28.99 E-value=55 Score=17.03 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=12.7
Q ss_pred cceeeEEcCCCCeEEecccC
Q psy13887 26 DKFEVCWSGTDSAIMTGSYN 45 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSYn 45 (107)
-||=+. |++.+.+||.|
T Consensus 7 ~K~~v~---D~~~~~iGs~N 23 (28)
T smart00155 7 TKLMIV---DDEIAYIGSAN 23 (28)
T ss_pred eEEEEE---cCCEEEEeCcc
Confidence 455555 88889999876
No 171
>KOG1354|consensus
Probab=28.85 E-value=60 Score=28.21 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
++.+|.+|++|||-+|. .+.|||.+
T Consensus 277 DvKFs~sGryilsRDyl-tvk~wD~n 301 (433)
T KOG1354|consen 277 DVKFSHSGRYILSRDYL-TVKLWDLN 301 (433)
T ss_pred ceEEccCCcEEEEeccc-eeEEEecc
Confidence 47899999999999995 67999975
No 172
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=28.51 E-value=41 Score=22.65 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=19.6
Q ss_pred eEEecccCCeEEEeecCCCcceeEee
Q psy13887 38 AIMTGSYNNFFRMFDRINKRDATLEA 63 (107)
Q Consensus 38 ~v~TGSYnn~F~ifd~~~~~~~~LeA 63 (107)
.++.|+|.|+.+|-. +..+++|.-
T Consensus 23 ~~~~~~YaN~~~V~~--S~~Ef~ldF 46 (92)
T PF11950_consen 23 EVARGVYANFAQVSH--SPEEFILDF 46 (92)
T ss_pred HhccccccceEEecc--CcceEEEEC
Confidence 678999999999985 456777776
No 173
>KOG1538|consensus
Probab=28.26 E-value=84 Score=29.81 Aligned_cols=35 Identities=11% Similarity=0.336 Sum_probs=29.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCCcceeEee
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEA 63 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeA 63 (107)
.|.|.-||++++-|-.|+.+.|=...++..+.+|-
T Consensus 137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER 171 (1081)
T ss_pred EeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence 58999999999999999999998766666666663
No 174
>KOG2139|consensus
Probab=28.11 E-value=54 Score=28.64 Aligned_cols=24 Identities=17% Similarity=0.589 Sum_probs=22.0
Q ss_pred eEEcCCCCeEEecccCCeEEEeec
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDR 53 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~ 53 (107)
.-|||||.++...+.+..|++|..
T Consensus 244 LkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 244 LKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred EEEcCCCCEEEEecccceeeeehh
Confidence 479999999999999999999944
No 175
>KOG0294|consensus
Probab=27.63 E-value=48 Score=28.31 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.1
Q ss_pred CCCeEEecccCCeEEEeecCC
Q psy13887 35 TDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 35 d~~~v~TGSYnn~F~ifd~~~ 55 (107)
+|.++++||-+..+||||...
T Consensus 52 s~~~~aSGssDetI~IYDm~k 72 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRK 72 (362)
T ss_pred cceeEeccCCCCcEEEEeccc
Confidence 689999999999999999863
No 176
>KOG1036|consensus
Probab=27.28 E-value=66 Score=27.15 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEcCCCCeEEecccCCeEEEeecC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
+.+.-...|+|||+.+.+++||.-
T Consensus 101 ~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred EeeccCCeEEEcccCccEEEEecc
Confidence 334446789999999999999975
No 177
>KOG0639|consensus
Probab=26.74 E-value=50 Score=30.12 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=25.3
Q ss_pred cceee-EEcCCCCeEEecccCCeEEEeecC
Q psy13887 26 DKFEV-CWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 26 DKFec-~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
|.-.| .+|.||..+=||+-+|.+|-||-.
T Consensus 552 DGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 552 DGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred CCceeEEecCCCceeecCCCccceeehhhh
Confidence 44556 789999999999999999999864
No 178
>KOG4640|consensus
Probab=26.72 E-value=93 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=25.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
+.||.+||+-++-|==|+.+++.|...+
T Consensus 67 sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 67 SLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred eeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 5699999999999999999999998754
No 179
>PRK03094 hypothetical protein; Provisional
Probab=26.19 E-value=80 Score=21.43 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=24.4
Q ss_pred cchHHHHHhhhh---hhh-ccccccceeeEEcCCCCeEEecccCCeEEEeecCCCcceeEeee
Q psy13887 6 QVHEYLRSKLCS---LYE-NDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAA 64 (107)
Q Consensus 6 ~vhe~Lr~kLcd---LYE-ND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeAs 64 (107)
+|.++|++|=.+ |++ +| -+.++|| |.||-=.|+-.|=| .......+.|+
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~~--~~~~Da~-------VitG~d~n~mgi~d-~~t~~pVI~A~ 64 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQD--AQGCDCC-------VVTGQDSNVMGIAD-TSTKGSVITAS 64 (80)
T ss_pred HHHHHHHHCCCEEEecCcccc--cCCcCEE-------EEeCCCcceecccc-cccCCcEEEcC
Confidence 578888887544 322 33 2445554 56663333333333 22344555554
No 180
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.74 E-value=92 Score=25.62 Aligned_cols=27 Identities=7% Similarity=0.090 Sum_probs=22.1
Q ss_pred eEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.++|+||+++...|.++.+.++|....
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 468999999999999999999998764
No 181
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.61 E-value=1e+02 Score=27.78 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=24.6
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRIN 55 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~ 55 (107)
-||+||+...++.|.=++.+++||...
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~ 290 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTR 290 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCC
Confidence 379999999999999999999999754
No 182
>KOG2106|consensus
Probab=25.34 E-value=77 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.2
Q ss_pred eEEcCCCCeEEecccCCeEEEeecC
Q psy13887 30 VCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
+.+||||..++-||-+|.+-||-..
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEEC
Confidence 3789999999999999999999653
No 183
>KOG1523|consensus
Probab=25.30 E-value=87 Score=26.80 Aligned_cols=26 Identities=12% Similarity=0.395 Sum_probs=24.0
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
||+.|...|+++--|+.+|||...+.
T Consensus 17 Awn~drt~iAv~~~~~evhiy~~~~~ 42 (361)
T KOG1523|consen 17 AWNSDRTQIAVSPNNHEVHIYSMLGA 42 (361)
T ss_pred eecCCCceEEeccCCceEEEEEecCC
Confidence 99999999999999999999987653
No 184
>KOG1408|consensus
Probab=24.17 E-value=96 Score=29.61 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=25.2
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
++..+.|..++|+||..+.++|||+..++
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEecccc
Confidence 34678899999999999999999998753
No 185
>PF08678 Rsbr_N: Rsbr N terminal; InterPro: IPR014792 Rsbr is a regulator of the RNA polymerase sigma factor subunit sigma(B). The structure of the N-terminal domain belongs to the globin fold superfamily []. ; PDB: 2BNL_A.
Probab=23.61 E-value=16 Score=26.72 Aligned_cols=13 Identities=23% Similarity=0.933 Sum_probs=10.0
Q ss_pred CcccccccccCCC
Q psy13887 95 LDFNKKILHTAWP 107 (107)
Q Consensus 95 ~DF~kKILH~aW~ 107 (107)
-||.-||.|+.||
T Consensus 61 ~eFaer~VqlGwp 73 (129)
T PF08678_consen 61 DEFAERVVQLGWP 73 (129)
T ss_dssp HHHHHHHHHTT--
T ss_pred HHHHHHHHHcCcc
Confidence 4899999999999
No 186
>COG1705 FlgJ Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.60 E-value=77 Score=24.97 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=23.6
Q ss_pred cCCCCeEEecccCCeEEEeecCCCcce---eEeee
Q psy13887 33 SGTDSAIMTGSYNNFFRMFDRINKRDA---TLEAA 64 (107)
Q Consensus 33 sgd~~~v~TGSYnn~F~ifd~~~~~~~---~LeAs 64 (107)
||.|++.+.-.|||+|.|=..-.+..+ |.|..
T Consensus 76 SgwGks~l~~~~~NLFGIK~s~~G~sv~~~T~E~~ 110 (201)
T COG1705 76 SGWGKSELASKGNNLFGIKGSYNGPSVTLKTQEYE 110 (201)
T ss_pred cCCcchhhccCCCCeeeeeeccCCCceEeeceeee
Confidence 788999999999999999875444333 44444
No 187
>KOG0322|consensus
Probab=23.25 E-value=1e+02 Score=25.96 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=24.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
++.+.+|++-++|.+++.-.|||...+.
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccC
Confidence 4678899999999999999999987543
No 188
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.19 E-value=1.3e+02 Score=16.41 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=15.3
Q ss_pred CCCeEEecccCCeEEEeecC
Q psy13887 35 TDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 35 d~~~v~TGSYnn~F~ifd~~ 54 (107)
+|..|..|+.++.+..+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 45688888999999998864
No 189
>KOG1524|consensus
Probab=23.16 E-value=77 Score=29.14 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=24.0
Q ss_pred EEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 31 CWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 31 ~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
-||+||.-++|.+=++++.||.+.+.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred ccCCCCceeeeecCCceEEEEeccch
Confidence 59999999999999999999999763
No 190
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=22.86 E-value=1.5e+02 Score=23.44 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=20.2
Q ss_pred eeeEEcCCCCeEEecccCC---eEEEeecCC
Q psy13887 28 FEVCWSGTDSAIMTGSYNN---FFRMFDRIN 55 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn---~F~ifd~~~ 55 (107)
....|||||+.|+.++..+ .+.+++..+
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 3568999999999888765 445555544
No 191
>KOG0303|consensus
Probab=22.51 E-value=1.1e+02 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=27.6
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCCcceeEee
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEA 63 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~~~~~LeA 63 (107)
..+||-||++++|.+=+.-+||||... +.++-|+
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~-~~~v~e~ 211 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRR-GTVVSEG 211 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCC-CcEeeec
Confidence 579999999999999999999999643 3444454
No 192
>KOG4283|consensus
Probab=22.43 E-value=60 Score=27.81 Aligned_cols=42 Identities=14% Similarity=0.369 Sum_probs=34.2
Q ss_pred hhhcccccccee-eEEcCCCCeEEecccCCeEEEeecCCCcce
Q psy13887 18 LYENDCIFDKFE-VCWSGTDSAIMTGSYNNFFRMFDRINKRDA 59 (107)
Q Consensus 18 LYEND~IFDKFe-c~~sgd~~~v~TGSYnn~F~ifd~~~~~~~ 59 (107)
+-.|=+-+.||- .||+.||.+.+|-+-.|-.|+|...++++.
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 335777777765 599999999999999999999988765443
No 193
>KOG0301|consensus
Probab=22.35 E-value=72 Score=29.66 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=20.7
Q ss_pred eEEc-CCCCeEEecccCCeEEEeecC
Q psy13887 30 VCWS-GTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 30 c~~s-gd~~~v~TGSYnn~F~ifd~~ 54 (107)
||.| +....+++||++.+.+||-..
T Consensus 105 C~ls~~~~~~~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 105 CSLSIGEDGTLISGSWDSTAKVWRIG 130 (745)
T ss_pred eeeecCCcCceEecccccceEEecch
Confidence 7777 666668999999999999654
No 194
>PF15323 Ashwin: Developmental protein
Probab=22.28 E-value=52 Score=26.11 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=13.0
Q ss_pred CCCcccccccccCCC
Q psy13887 93 DCLDFNKKILHTAWP 107 (107)
Q Consensus 93 d~~DF~kKILH~aW~ 107 (107)
++-...+||.|..||
T Consensus 200 k~~e~KkkiqhVTWP 214 (214)
T PF15323_consen 200 KPPEAKKKIQHVTWP 214 (214)
T ss_pred CCccccccccccCCC
Confidence 466788999999999
No 195
>KOG1524|consensus
Probab=21.92 E-value=77 Score=29.14 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=25.4
Q ss_pred eeEEcCCCCeEEecccCCeEEEeecCCC
Q psy13887 29 EVCWSGTDSAIMTGSYNNFFRMFDRINK 56 (107)
Q Consensus 29 ec~~sgd~~~v~TGSYnn~F~ifd~~~~ 56 (107)
.|.||+.+.-|+||+=+=-|.|||..+.
T Consensus 191 ~~~W~~~s~lI~sgGED~kfKvWD~~G~ 218 (737)
T KOG1524|consen 191 SLSWSTQSNIIASGGEDFRFKIWDAQGA 218 (737)
T ss_pred EeecCccccceeecCCceeEEeecccCc
Confidence 5789999999999999999999998753
No 196
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=21.66 E-value=65 Score=27.46 Aligned_cols=40 Identities=15% Similarity=0.310 Sum_probs=28.9
Q ss_pred cchHHHHHhhhhhhhccccccceeeEEcCCCC-eEEecccCC--eEEEeec
Q psy13887 6 QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDS-AIMTGSYNN--FFRMFDR 53 (107)
Q Consensus 6 ~vhe~Lr~kLcdLYEND~IFDKFec~~sgd~~-~v~TGSYnn--~F~ifd~ 53 (107)
++|+|||.. --+.--..||||++. ..++-.|.+ .+-|.+-
T Consensus 211 ~~~dy~~~~--------r~l~~lk~~yspn~~~~~~~~yYPGd~YVDiVGL 253 (355)
T COG4124 211 RLHDYLRKS--------RGLPWLKFMYSPNGGFKGLEAYYPGDNYVDIVGL 253 (355)
T ss_pred HHHHHHhhc--------cCCCeeEEEEcCCCCcccchhcCCCCceeeeeee
Confidence 567777765 445566789999999 999999964 5555443
No 197
>KOG1587|consensus
Probab=21.64 E-value=79 Score=28.16 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred eeeEEcCCCCeEEecccCCeEEEeecC
Q psy13887 28 FEVCWSGTDSAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 28 Fec~~sgd~~~v~TGSYnn~F~ifd~~ 54 (107)
..+-||++|+.++.|.|++..+|++..
T Consensus 490 ~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 490 TRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 345799999999999999999999874
No 198
>KOG2110|consensus
Probab=21.59 E-value=1.3e+02 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred eEEcCCCCeEEecccCCeE-EEeecCCCc
Q psy13887 30 VCWSGTDSAIMTGSYNNFF-RMFDRINKR 57 (107)
Q Consensus 30 c~~sgd~~~v~TGSYnn~F-~ifd~~~~~ 57 (107)
.++|+||..++|+|=.+.+ |||....++
T Consensus 179 lafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred EEECCCCCEEEEeccCceEEEEEEcCCcc
No 199
>PF14262 DUF4353: Domain of unknown function (DUF4353)
Probab=20.83 E-value=90 Score=25.21 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=37.6
Q ss_pred ccccccceeeEEcCCCCeEEecccCCeEEEeecC--CCcceeEeeeccccCcc
Q psy13887 21 NDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRI--NKRDATLEAAREIAKPK 71 (107)
Q Consensus 21 ND~IFDKFec~~sgd~~~v~TGSYnn~F~ifd~~--~~~~~~LeAsk~~~k~k 71 (107)
+=+||-|=.+.++|.|...++|.|++=++.=+.- ....+++.|..+..+.+
T Consensus 90 ~aai~sk~dLti~G~GtL~V~g~~~~GI~s~d~L~I~~Gti~V~a~~dGi~g~ 142 (264)
T PF14262_consen 90 DAAIYSKGDLTINGSGTLTVTGNYKHGIHSKDDLVITGGTITVTAADDGIKGK 142 (264)
T ss_pred cEEEEECCCEEEcceEEEEEEecccCcEEeCCeEEEEecEEEEEEcccceecc
Confidence 4579999999999999999999999976633321 13456777766666554
No 200
>KOG4328|consensus
Probab=20.19 E-value=1e+02 Score=27.40 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=29.1
Q ss_pred cceeeEEcCCCCeEEecccCCeEEEeecCCCc
Q psy13887 26 DKFEVCWSGTDSAIMTGSYNNFFRMFDRINKR 57 (107)
Q Consensus 26 DKFec~~sgd~~~v~TGSYnn~F~ifd~~~~~ 57 (107)
-+|...|-||.+.|+-|-|-.-+-||+..+++
T Consensus 422 T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 68999999999999999999999999977654
No 201
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=20.13 E-value=2.3e+02 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.3
Q ss_pred EEcCCC-CeEEecccCCeEEEeecC
Q psy13887 31 CWSGTD-SAIMTGSYNNFFRMFDRI 54 (107)
Q Consensus 31 ~~sgd~-~~v~TGSYnn~F~ifd~~ 54 (107)
.+.||| ..++.||=+..+|||+..
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~ 33 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD 33 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC
Confidence 355665 579999999999999864
Done!