RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13887
         (107 letters)



>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
           isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
           manganese binding, methylation, phosphoprotein, protein
           phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
          Length = 447

 Score =  122 bits (306), Expect = 1e-34
 Identities = 84/101 (83%), Positives = 91/101 (90%)

Query: 6   QVHEYLRSKLCSLYENDCIFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAR 65
           QVHEYLRSKLCSLYENDCIFDKFE CW+G+DS +MTGSYNNFFRMFDR  KRD TLEA+R
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASR 383

Query: 66  EIAKPKTLLRPRKVCTGGKRKKDEISVDCLDFNKKILHTAW 106
           E  KP+T+L+PRKVC  GKRKKDEISVD LDFNKKILHTAW
Sbjct: 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAW 424


>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR
          {Synthetic}
          Length = 26

 Score = 24.0 bits (51), Expect = 2.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 41 TGSYNNFFRMFDR 53
          +GS + FFR+F+R
Sbjct: 1  SGSLSTFFRLFNR 13


>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase,
           adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga
           maritima}
          Length = 192

 Score = 24.4 bits (53), Expect = 8.3
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 59  ATLEAAREIAKPKTLLRPRKVCTGGKRKKDEISVDCL 95
           + LE   E  +     RP    T  K+++++IS +  
Sbjct: 89  SYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEG 125


>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain,
          oxidoreductase regulator; NMR {Homo sapiens}
          Length = 149

 Score = 24.3 bits (52), Expect = 9.0
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 27 KFEVCWSGTDSAIMTGSYNNFFRMFDRINKR 57
           F V WS      +  S++ F ++   + + 
Sbjct: 30 AFSVRWSDGSDTFVRRSWDEFRQLKKTLKET 60


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,639,199
Number of extensions: 83308
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 6
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)