RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13887
         (107 letters)



>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 133

 Score = 24.2 bits (52), Expect = 3.2
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 52  DRINK-RDATLEAAREIAKPKTLL---RPRKVCTGGKRKKDEIS 91
           +R+   +       +   K  + L     RK+    KRK DEI+
Sbjct: 65  NRLALTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEIN 108


>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId:
          205488]}
          Length = 125

 Score = 24.2 bits (52), Expect = 3.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 24 IFDKFEVCWSGTDSAIMTGSY 44
          + D+    +  T +AIM  SY
Sbjct: 32 VADQKTYSFDSTTAAIMLASY 52


>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding
          domain of phage mu transposase {Bacteriophage mu
          [TaxId: 10677]}
          Length = 99

 Score = 23.7 bits (51), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 3  PSPQVHEYLRSKLCSLYEN 21
          P+ + H+Y R  L S ++N
Sbjct: 5  PTLEAHDYDREALWSKWDN 23


>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
          (Glycine max), glycinin A3B4 [TaxId: 3847]}
          Length = 245

 Score = 24.1 bits (52), Expect = 4.1
 Identities = 3/33 (9%), Positives = 10/33 (30%), Gaps = 2/33 (6%)

Query: 47 FFRMFDRINK--RDATLEAAREIAKPKTLLRPR 77
              ++  +   + A +  ++       L  P 
Sbjct: 23 LIETWNSQHPELQCAGVTVSKRTLNRNGLHLPS 55


>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
           [TaxId: 727]}
          Length = 173

 Score = 24.0 bits (51), Expect = 4.9
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 24  IFDKFEVCWSGTDSAIMTGSYNNFFRMFDRINKRDATLEAAREIAK 69
           I    +V     D  +  GS  N+     R    +  L  A EI +
Sbjct: 106 ITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELS-AHEIVE 150


>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 337

 Score = 23.2 bits (48), Expect = 9.7
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 30  VCWSGTDSAIMTGSYNNFFRMFD 52
              S  D  I+TGS +    +++
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYE 334


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 415,774
Number of extensions: 17279
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 18
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)