BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13888
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/49 (91%), Positives = 46/49 (93%)
Query: 8 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL +KN A FLLSTND
Sbjct: 68 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116
>pdb|2IOF|K Chain K, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
Sodium Borohydride-Reduced Substrate Intermediate
Length = 267
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 215 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 248
>pdb|1SWV|A Chain A, Crystal Structure Of The D12a Mutant Of
Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1SWV|B Chain B, Crystal Structure Of The D12a Mutant Of
Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1SWW|A Chain A, Crystal Structure Of The Phosphonoacetaldehyde Hydrolase
D12a Mutant Complexed With Magnesium And Substrate
Phosphonoacetaldehyde
pdb|1SWW|B Chain B, Crystal Structure Of The Phosphonoacetaldehyde Hydrolase
D12a Mutant Complexed With Magnesium And Substrate
Phosphonoacetaldehyde
Length = 267
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 215 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 248
>pdb|1RQL|A Chain A, Crystal Structure Of Phosponoacetaldehyde Hydrolase
Complexed With Magnesium And The Inhibitor Vinyl
Sulfonate
pdb|1RQL|B Chain B, Crystal Structure Of Phosponoacetaldehyde Hydrolase
Complexed With Magnesium And The Inhibitor Vinyl
Sulfonate
pdb|1RQN|A Chain A, Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
pdb|1RQN|B Chain B, Phosphonoacetaldehyde Hydrolase Complexed With Magnesium
Length = 267
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 215 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 248
>pdb|1FEZ|A Chain A, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|B Chain B, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|C Chain C, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
pdb|1FEZ|D Chain D, The Crystal Structure Of Bacillus Cereus
Phosphonoacetaldehyde Hydrolase Complexed With
Tungstate, A Product Analog
Length = 256
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 211 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 244
>pdb|2IOH|A Chain A, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|B Chain B, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|C Chain C, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
pdb|2IOH|D Chain D, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
A K53r Mutation
Length = 267
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 215 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 248
>pdb|2IOF|A Chain A, Crystal Structure Of Phosphonoacetaldehyde Hydrolase With
Sodium Borohydride-Reduced Substrate Intermediate
Length = 267
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 215 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 248
>pdb|1RDF|A Chain A, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|B Chain B, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|C Chain C, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|D Chain D, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|E Chain E, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
pdb|1RDF|F Chain F, G50p Mutant Of Phosphonoacetaldehyde Hydrolase In Complex
With Substrate Analogue Vinyl Sulfonate
Length = 267
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 21 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 54
E E + + S+E+ EKI +R +N AHF + T
Sbjct: 215 EEEVENMDSVELREKIEVVRNRFVENGAHFTIET 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,092,471
Number of Sequences: 62578
Number of extensions: 65761
Number of successful extensions: 148
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)