Query psy13888
Match_columns 70
No_of_seqs 92 out of 94
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 22:59:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1354|consensus 100.0 2.7E-32 5.8E-37 214.4 4.9 60 9-68 60-119 (433)
2 COG5170 CDC55 Serine/threonine 100.0 7.7E-32 1.7E-36 212.0 3.5 62 6-67 58-119 (460)
3 PF00400 WD40: WD domain, G-be 96.5 0.0064 1.4E-07 30.8 3.8 28 34-63 12-39 (39)
4 smart00320 WD40 WD40 repeats. 95.3 0.03 6.4E-07 24.6 2.8 27 35-63 14-40 (40)
5 KOG0279|consensus 94.1 0.05 1.1E-06 42.8 3.0 34 33-66 148-181 (315)
6 KOG0645|consensus 93.0 0.11 2.4E-06 40.8 3.3 58 7-65 251-311 (312)
7 PF12894 Apc4_WD40: Anaphase-p 90.8 0.48 1E-05 27.1 3.5 33 31-65 9-41 (47)
8 KOG1446|consensus 90.4 0.49 1.1E-05 37.2 4.3 40 12-65 91-130 (311)
9 KOG0273|consensus 88.2 0.47 1E-05 39.6 2.9 30 35-66 361-390 (524)
10 cd00200 WD40 WD40 domain, foun 87.6 0.85 1.8E-05 28.1 3.1 31 34-66 52-82 (289)
11 KOG0282|consensus 86.8 0.46 1E-05 39.4 2.1 31 35-66 216-246 (503)
12 KOG1063|consensus 86.4 0.82 1.8E-05 39.6 3.4 32 34-65 55-87 (764)
13 cd00200 WD40 WD40 domain, foun 83.5 2.1 4.6E-05 26.3 3.5 31 34-66 10-40 (289)
14 KOG0318|consensus 81.3 1.9 4.1E-05 36.6 3.5 31 35-67 237-267 (603)
15 PTZ00421 coronin; Provisional 80.2 2.3 4.9E-05 33.9 3.5 33 33-66 75-107 (493)
16 KOG0276|consensus 79.9 2.6 5.6E-05 36.7 3.9 39 12-64 88-126 (794)
17 KOG1034|consensus 78.1 1.8 3.8E-05 35.1 2.3 32 35-67 137-168 (385)
18 KOG4190|consensus 77.0 1.6 3.5E-05 38.2 1.9 32 32-65 734-765 (1034)
19 PTZ00421 coronin; Provisional 76.7 3.2 6.9E-05 33.0 3.4 33 33-66 125-157 (493)
20 KOG0316|consensus 76.4 2.6 5.7E-05 33.2 2.8 30 34-65 18-47 (307)
21 KOG0319|consensus 76.1 2.4 5.3E-05 36.9 2.7 20 49-68 519-538 (775)
22 KOG0647|consensus 75.7 2.4 5.3E-05 33.9 2.4 32 35-66 115-146 (347)
23 KOG1332|consensus 73.7 3 6.4E-05 32.8 2.4 31 36-66 152-194 (299)
24 KOG1188|consensus 73.7 5 0.00011 32.5 3.8 33 35-67 72-104 (376)
25 KOG0292|consensus 73.2 3.4 7.3E-05 37.4 2.9 30 38-67 208-238 (1202)
26 KOG0278|consensus 73.2 4.6 0.0001 32.1 3.4 29 35-65 145-173 (334)
27 KOG4283|consensus 71.7 5.4 0.00012 32.4 3.5 30 35-67 190-221 (397)
28 PTZ00420 coronin; Provisional 69.9 5.4 0.00012 32.8 3.2 31 34-66 126-157 (568)
29 KOG0271|consensus 69.1 5.6 0.00012 33.0 3.1 29 35-66 249-277 (480)
30 KOG0266|consensus 69.0 5.9 0.00013 30.5 3.1 30 34-65 204-233 (456)
31 KOG2321|consensus 67.3 2.2 4.8E-05 36.7 0.5 49 12-63 252-300 (703)
32 KOG1063|consensus 67.3 9.9 0.00021 33.3 4.4 47 9-67 179-226 (764)
33 KOG0272|consensus 67.0 5.5 0.00012 33.0 2.7 43 12-66 208-250 (459)
34 KOG0285|consensus 65.9 5.8 0.00013 32.8 2.7 18 48-65 164-181 (460)
35 KOG1445|consensus 65.4 2 4.3E-05 37.9 -0.1 33 33-66 677-709 (1012)
36 KOG1007|consensus 65.0 7.2 0.00016 31.5 3.0 32 35-69 125-156 (370)
37 KOG0313|consensus 64.6 7.2 0.00016 32.0 2.9 41 13-66 337-377 (423)
38 KOG0299|consensus 64.3 7 0.00015 32.5 2.8 30 40-69 381-414 (479)
39 KOG4810|consensus 63.1 2.2 4.8E-05 32.4 -0.2 23 39-61 162-184 (227)
40 KOG0277|consensus 61.5 7 0.00015 31.0 2.3 30 35-65 106-135 (311)
41 KOG0293|consensus 60.8 4.4 9.6E-05 33.9 1.2 33 34-67 483-515 (519)
42 PLN00181 protein SPA1-RELATED; 60.3 12 0.00025 30.6 3.4 32 32-65 482-513 (793)
43 PF10168 Nup88: Nuclear pore c 60.1 14 0.00031 31.3 4.0 35 31-65 144-179 (717)
44 KOG0302|consensus 59.7 8.9 0.00019 31.6 2.7 30 36-68 305-335 (440)
45 PF14470 bPH_3: Bacterial PH d 59.5 17 0.00037 21.3 3.3 30 34-63 52-81 (96)
46 cd04790 HTH_Cfa-like_unk Helix 59.5 0.91 2E-05 31.4 -2.6 29 15-43 140-171 (172)
47 PLN00181 protein SPA1-RELATED; 59.4 13 0.00028 30.3 3.5 28 35-65 663-690 (793)
48 KOG0264|consensus 59.1 9.4 0.0002 31.2 2.7 32 34-67 273-305 (422)
49 cd07694 Ig2_CD4 Second immunog 58.9 10 0.00023 24.7 2.4 36 30-65 21-59 (88)
50 KOG0290|consensus 58.2 13 0.00028 30.1 3.3 35 34-69 288-322 (364)
51 PF08366 LLGL: LLGL2; InterPr 57.9 9.1 0.0002 25.6 2.1 19 34-52 14-32 (105)
52 PTZ00420 coronin; Provisional 57.6 13 0.00028 30.6 3.3 32 33-66 167-198 (568)
53 KOG0772|consensus 57.5 8.4 0.00018 33.0 2.3 32 36-68 271-302 (641)
54 KOG0288|consensus 56.7 12 0.00025 31.1 2.9 29 36-66 222-250 (459)
55 KOG0276|consensus 55.6 14 0.0003 32.4 3.3 33 33-65 183-215 (794)
56 KOG0295|consensus 54.3 16 0.00034 30.0 3.2 35 31-65 275-322 (406)
57 KOG0290|consensus 54.0 10 0.00022 30.6 2.1 35 31-65 94-129 (364)
58 KOG0279|consensus 50.4 13 0.00028 29.5 2.2 16 49-64 119-134 (315)
59 KOG0266|consensus 50.0 20 0.00044 27.6 3.1 29 36-66 249-277 (456)
60 KOG0283|consensus 48.7 12 0.00026 32.4 1.8 37 13-65 361-398 (712)
61 KOG4328|consensus 48.5 13 0.00028 31.2 2.0 32 34-66 323-354 (498)
62 PF14783 BBS2_Mid: Ciliary BBS 47.1 37 0.00081 22.9 3.7 28 37-64 3-32 (111)
63 KOG1517|consensus 46.4 17 0.00037 33.6 2.5 45 14-67 1099-1143(1387)
64 KOG0310|consensus 46.3 24 0.00052 29.5 3.2 46 19-66 90-142 (487)
65 KOG0272|consensus 45.6 19 0.0004 30.0 2.4 38 24-63 420-458 (459)
66 KOG1240|consensus 45.6 23 0.0005 33.1 3.2 33 34-67 1049-1081(1431)
67 COG2319 FOG: WD40 repeat [Gene 45.3 78 0.0017 20.1 4.7 32 34-66 110-143 (466)
68 KOG0319|consensus 45.0 20 0.00043 31.6 2.6 22 45-66 422-443 (775)
69 PF02603 Hpr_kinase_N: HPr Ser 44.9 4.9 0.00011 26.4 -0.8 35 22-56 57-91 (127)
70 PF11483 DUF3209: Protein of u 44.6 5.8 0.00013 27.8 -0.5 18 18-35 71-88 (123)
71 KOG0645|consensus 43.4 29 0.00064 27.6 3.1 24 41-64 199-224 (312)
72 KOG0643|consensus 43.2 21 0.00045 28.6 2.3 33 32-66 189-221 (327)
73 KOG0313|consensus 42.5 28 0.00061 28.7 3.0 41 10-65 249-289 (423)
74 KOG0294|consensus 42.4 44 0.00094 27.1 4.0 44 12-67 240-283 (362)
75 KOG0305|consensus 42.2 24 0.00051 29.1 2.6 31 34-66 344-377 (484)
76 TIGR03866 PQQ_ABC_repeats PQQ- 42.0 38 0.00082 22.1 3.1 31 33-66 248-280 (300)
77 KOG0315|consensus 42.0 28 0.00062 27.6 2.9 31 35-67 126-156 (311)
78 PF08452 DNAP_B_exo_N: DNA pol 40.8 18 0.00038 18.7 1.1 16 36-51 3-18 (22)
79 KOG0268|consensus 40.8 19 0.00041 29.7 1.8 21 48-68 120-140 (433)
80 KOG1240|consensus 40.6 14 0.0003 34.4 1.1 27 36-63 1405-1431(1431)
81 KOG0301|consensus 40.3 19 0.00042 31.5 1.9 16 49-64 153-168 (745)
82 KOG0310|consensus 40.1 39 0.00084 28.3 3.5 41 14-67 146-186 (487)
83 KOG4532|consensus 39.9 21 0.00045 28.7 1.9 34 33-66 112-147 (344)
84 KOG0302|consensus 39.0 38 0.00082 28.1 3.2 40 23-68 342-381 (440)
85 KOG0271|consensus 39.0 41 0.0009 28.1 3.5 28 36-66 412-440 (480)
86 KOG0270|consensus 38.6 29 0.00063 28.9 2.6 22 45-66 384-405 (463)
87 KOG0305|consensus 37.5 38 0.00083 27.9 3.1 33 33-67 217-249 (484)
88 KOG1008|consensus 37.3 21 0.00045 31.4 1.6 51 19-69 217-279 (783)
89 KOG0282|consensus 36.5 37 0.0008 28.6 2.8 30 35-66 344-373 (503)
90 KOG4283|consensus 35.7 39 0.00084 27.6 2.8 29 36-65 104-132 (397)
91 KOG0321|consensus 35.1 32 0.00069 30.1 2.3 29 36-66 103-131 (720)
92 KOG0265|consensus 33.1 49 0.0011 26.6 3.0 43 10-66 36-78 (338)
93 PF08662 eIF2A: Eukaryotic tra 32.9 41 0.00089 23.0 2.2 37 27-65 51-91 (194)
94 KOG0284|consensus 32.9 46 0.00099 27.8 2.8 31 34-66 181-211 (464)
95 PRK04057 30S ribosomal protein 32.4 17 0.00037 26.6 0.3 19 12-30 70-88 (203)
96 KOG0318|consensus 31.8 47 0.001 28.5 2.8 27 36-65 576-602 (603)
97 KOG0286|consensus 31.6 40 0.00088 27.1 2.3 22 46-67 198-219 (343)
98 KOG1034|consensus 30.6 38 0.00082 27.7 2.0 28 36-65 184-211 (385)
99 PF11715 Nup160: Nucleoporin N 30.2 55 0.0012 25.4 2.8 21 46-66 229-249 (547)
100 smart00733 Mterf Mitochondrial 30.1 8.5 0.00018 17.7 -1.1 12 21-32 19-30 (31)
101 KOG0641|consensus 29.9 49 0.0011 26.4 2.5 30 33-64 319-348 (350)
102 KOG0640|consensus 29.4 47 0.001 27.4 2.3 22 45-66 315-336 (430)
103 KOG0646|consensus 29.4 74 0.0016 26.7 3.5 21 46-66 187-207 (476)
104 KOG0300|consensus 28.9 41 0.0009 27.9 2.0 20 48-67 369-388 (481)
105 KOG0315|consensus 28.8 87 0.0019 24.9 3.7 45 9-67 203-247 (311)
106 KOG1407|consensus 28.6 66 0.0014 25.6 3.0 32 35-67 66-97 (313)
107 KOG0283|consensus 27.5 67 0.0014 28.0 3.0 31 35-66 503-533 (712)
108 KOG0308|consensus 27.5 57 0.0012 28.7 2.6 20 47-66 225-244 (735)
109 KOG1587|consensus 26.0 83 0.0018 26.2 3.2 35 33-67 291-325 (555)
110 KOG0267|consensus 25.5 29 0.00062 30.8 0.5 17 50-66 85-101 (825)
111 KOG0296|consensus 25.3 57 0.0012 26.8 2.2 35 28-65 322-356 (399)
112 KOG0308|consensus 24.9 63 0.0014 28.4 2.4 40 22-66 61-104 (735)
113 KOG0278|consensus 24.8 83 0.0018 25.2 2.9 40 24-65 251-297 (334)
114 KOG0288|consensus 24.6 40 0.00086 28.1 1.2 27 35-63 433-459 (459)
115 PF03311 Cornichon: Cornichon 24.4 18 0.00039 24.2 -0.7 19 21-39 32-50 (128)
116 PF01015 Ribosomal_S3Ae: Ribos 24.3 25 0.00053 25.4 -0.1 18 13-30 77-94 (194)
117 KOG1455|consensus 24.3 31 0.00068 27.2 0.5 11 52-62 272-282 (313)
118 KOG0301|consensus 23.8 79 0.0017 27.9 2.8 23 42-64 185-207 (745)
119 KOG0285|consensus 23.7 85 0.0018 26.2 2.9 38 29-68 405-442 (460)
120 PHA02119 hypothetical protein 23.6 22 0.00048 23.4 -0.4 17 24-40 60-76 (87)
121 PF12122 DUF3582: Protein of u 22.8 29 0.00062 22.7 0.0 14 25-38 18-31 (101)
122 KOG0303|consensus 22.8 66 0.0014 26.9 2.1 31 36-67 84-114 (472)
123 KOG0649|consensus 22.6 74 0.0016 25.4 2.3 38 13-67 54-91 (325)
124 KOG0647|consensus 22.6 1.1E+02 0.0023 24.9 3.1 33 31-65 70-102 (347)
125 PF14157 YmzC: YmzC-like prote 22.6 1E+02 0.0022 19.4 2.4 21 46-66 28-48 (63)
126 KOG0274|consensus 22.4 1.1E+02 0.0023 25.2 3.2 21 47-67 464-484 (537)
127 KOG2523|consensus 22.1 1.5E+02 0.0032 22.1 3.6 44 23-68 32-77 (181)
128 PF12101 DUF3577: Protein of u 21.9 72 0.0016 22.5 1.9 19 36-54 20-38 (137)
129 cd08070 MPN_like Mpr1p, Pad1p 21.8 1.7E+02 0.0036 18.6 3.4 49 11-66 70-120 (128)
130 PF13588 HSDR_N_2: Type I rest 21.7 65 0.0014 19.8 1.5 20 47-66 81-100 (112)
131 KOG0640|consensus 21.4 1E+02 0.0022 25.4 2.9 32 30-63 258-289 (430)
132 PF10516 SHNi-TPR: SHNi-TPR; 21.2 27 0.00058 19.2 -0.3 13 25-37 23-35 (38)
133 PF03989 DNA_gyraseA_C: DNA gy 20.7 92 0.002 16.5 1.8 20 49-68 2-21 (48)
134 KOG0642|consensus 20.6 41 0.00089 28.7 0.5 29 38-66 296-325 (577)
135 KOG0299|consensus 20.5 63 0.0014 27.1 1.6 24 44-67 253-276 (479)
136 KOG2055|consensus 20.3 1.2E+02 0.0026 25.7 3.1 40 26-67 337-376 (514)
No 1
>KOG1354|consensus
Probab=99.97 E-value=2.7e-32 Score=214.42 Aligned_cols=60 Identities=65% Similarity=0.939 Sum_probs=58.3
Q ss_pred ceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888 9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p 68 (70)
+||+|+++|||||||||||||||||||||+||||+++|.++|||||||||||||||++.-
T Consensus 60 ~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~ 119 (433)
T KOG1354|consen 60 GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERG 119 (433)
T ss_pred cceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccc
Confidence 599999999999999999999999999999999999999999999999999999999863
No 2
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.97 E-value=7.7e-32 Score=212.01 Aligned_cols=62 Identities=52% Similarity=0.782 Sum_probs=59.9
Q ss_pred CCcceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 6 PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 6 ~~~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
...|||+|+|||||||||||||||||||||||+|+||++++.++|||||||||||||||++.
T Consensus 58 s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 58 SYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred ccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecc
Confidence 35799999999999999999999999999999999999999999999999999999999985
No 3
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=96.51 E-value=0.0064 Score=30.79 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=24.1
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
.-|+.|.|.+. ...++-++.|++|++|+
T Consensus 12 ~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 12 SSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred CcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 45899999988 56788889999999996
No 4
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.31 E-value=0.03 Score=24.63 Aligned_cols=27 Identities=4% Similarity=0.084 Sum_probs=21.9
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
.|+++.|.+.. ..++.++.|++|.+|.
T Consensus 14 ~i~~~~~~~~~--~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDG--KYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCC--CEEEEecCCCeEEEcC
Confidence 47889997755 5788888999999994
No 5
>KOG0279|consensus
Probab=94.10 E-value=0.05 Score=42.75 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=27.5
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.+=|++++|.|+.....++=+++|||+|+|.+.+
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 4558999999988655566677999999999865
No 6
>KOG0645|consensus
Probab=92.98 E-value=0.11 Score=40.81 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=41.7
Q ss_pred CcceeeEEEeeec-cCcccccccccch--hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 7 KRGEYNVYSTFQS-HEPEFDYLKSLEI--EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 7 ~~~ey~~~teFQS-He~EFDYLkSleI--eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+.+.++.+.+=-+ -+|.|.-|-+.+- |--||+|.|.+ +..+.++..++|++|++|++.
T Consensus 251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC-CCCCceeecCCCceEEEEEec
Confidence 4455665555422 3688887765432 34799999999 556788889999999999974
No 7
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.75 E-value=0.48 Score=27.12 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=27.8
Q ss_pred chhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...++|..+.|||..+ .+-++++|+.|-|+|++
T Consensus 9 ~l~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 3455688999999876 88899999999999983
No 8
>KOG1446|consensus
Probab=90.44 E-value=0.49 Score=37.17 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=32.4
Q ss_pred eEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 12 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+|.--|+.|. ..||.|+=+|-. ..||=++.||||+||.++
T Consensus 91 kylRYF~GH~------------~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 91 KYLRYFPGHK------------KRVNSLSVSPKD--DTFLSSSLDKTVRLWDLR 130 (311)
T ss_pred ceEEEcCCCC------------ceEEEEEecCCC--CeEEecccCCeEEeeEec
Confidence 5666788886 468888866554 789999999999999997
No 9
>KOG0273|consensus
Probab=88.16 E-value=0.47 Score=39.56 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=23.5
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
+||.|+|.+++. .++=++.|.|+|||.+.+
T Consensus 361 ~V~alk~n~tg~--LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 361 EVNALKWNPTGS--LLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred ceEEEEECCCCc--eEEEecCCCeeEeeecCC
Confidence 599999998764 455566889999998654
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.62 E-value=0.85 Score=28.12 Aligned_cols=31 Identities=3% Similarity=0.001 Sum_probs=24.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|..+.|.+.. ..++.+++|++|++|.+..
T Consensus 52 ~~i~~~~~~~~~--~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 52 GPVRDVAASADG--TYLASGSSDKTIRLWDLET 82 (289)
T ss_pred cceeEEEECCCC--CEEEEEcCCCeEEEEEcCc
Confidence 345788998765 5777788899999999875
No 11
>KOG0282|consensus
Probab=86.81 E-value=0.46 Score=39.44 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=24.0
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
=|.+|+|++... .+||=+++|..||||.|+.
T Consensus 216 gvsai~~fp~~~-hLlLS~gmD~~vklW~vy~ 246 (503)
T KOG0282|consen 216 GVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYD 246 (503)
T ss_pred ccchhhhcccee-eEEEecCCCceEEEEEEec
Confidence 378899998665 3444457999999999986
No 12
>KOG1063|consensus
Probab=86.40 E-value=0.82 Score=39.62 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=26.0
Q ss_pred hhhceeEeeeCCCCceEEeee-CCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLST-NDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLst-NdktiKLWkv~ 65 (70)
..||+++|++......+|+|+ -|++|+||+++
T Consensus 55 a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~ 87 (764)
T KOG1063|consen 55 ARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLR 87 (764)
T ss_pred cceEEEEEcccccccceEEEccCCCcEEEEEEe
Confidence 469999999887644466665 69999999998
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=83.52 E-value=2.1 Score=26.33 Aligned_cols=31 Identities=3% Similarity=0.018 Sum_probs=23.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|.+|.|.+. ...++.++.|++|.+|.+..
T Consensus 10 ~~i~~~~~~~~--~~~l~~~~~~g~i~i~~~~~ 40 (289)
T cd00200 10 GGVTCVAFSPD--GKLLATGSGDGTIKVWDLET 40 (289)
T ss_pred CCEEEEEEcCC--CCEEEEeecCcEEEEEEeeC
Confidence 56889999776 34566666699999999864
No 14
>KOG0318|consensus
Probab=81.29 E-value=1.9 Score=36.58 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.0
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
-|=+|.|.|... +||=++-|||+|+|.|+..
T Consensus 237 sIfalsWsPDs~--~~~T~SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 237 SIFALSWSPDST--QFLTVSADKTIKIWDVSTN 267 (603)
T ss_pred cEEEEEECCCCc--eEEEecCCceEEEEEeecc
Confidence 467889987654 7888999999999999865
No 15
>PTZ00421 coronin; Provisional
Probab=80.20 E-value=2.3 Score=33.87 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=25.4
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+.|.|.+.. ...++-++.|++|++|.+..
T Consensus 75 ~~~V~~v~fsP~d-~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 75 EGPIIDVAFNPFD-PQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred CCCEEEEEEcCCC-CCEEEEEeCCCEEEEEecCC
Confidence 3568999998743 34677778999999999864
No 16
>KOG0276|consensus
Probab=79.88 E-value=2.6 Score=36.73 Aligned_cols=39 Identities=23% Similarity=0.514 Sum_probs=27.4
Q ss_pred eEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888 12 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv 64 (70)
+-..+|..|. ||+|++.+- +++--+|=|+.|-|||||.-
T Consensus 88 ekV~~FeAH~---DyIR~iavH-----------Pt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 88 EKVKTFEAHS---DYIRSIAVH-----------PTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeEEeeccc---cceeeeeec-----------CCCCeEEecCCccEEEEeec
Confidence 3456777775 999998753 34444555678899999974
No 17
>KOG1034|consensus
Probab=78.11 E-value=1.8 Score=35.08 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.8
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
-||.||.+|... +.+|=.+-|.+|+||.|++.
T Consensus 137 sINeik~~p~~~-qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 137 SINEIKFHPDRP-QLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred cchhhhcCCCCC-cEEEEecCCceEEEEeccCC
Confidence 489999877653 45666678999999999763
No 18
>KOG4190|consensus
Probab=77.02 E-value=1.6 Score=38.22 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=24.6
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-.|||.+|-=+. |-+-|+-++.|||+|||-+.
T Consensus 734 H~~~iRai~Aid--NENSFiSASkDKTVKLWSik 765 (1034)
T KOG4190|consen 734 HQEKIRAIAAID--NENSFISASKDKTVKLWSIK 765 (1034)
T ss_pred cHHHhHHHHhcc--cccceeeccCCceEEEEEec
Confidence 357777776444 55679999999999999875
No 19
>PTZ00421 coronin; Provisional
Probab=76.74 E-value=3.2 Score=33.04 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=24.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..+|..|.|-+..+ +.++-++.|++|+||.+..
T Consensus 125 ~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~t 157 (493)
T PTZ00421 125 TKKVGIVSFHPSAM-NVLASAGADMVVNVWDVER 157 (493)
T ss_pred CCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCC
Confidence 45789999976542 3555668899999999863
No 20
>KOG0316|consensus
Probab=76.43 E-value=2.6 Score=33.18 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=21.3
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+-|+.+|.= ...+-.|-.+||||||||+..
T Consensus 18 gaV~avryN--~dGnY~ltcGsdrtvrLWNp~ 47 (307)
T KOG0316|consen 18 GAVRAVRYN--VDGNYCLTCGSDRTVRLWNPL 47 (307)
T ss_pred cceEEEEEc--cCCCEEEEcCCCceEEeeccc
Confidence 345555542 345678888999999999863
No 21
>KOG0319|consensus
Probab=76.09 E-value=2.4 Score=36.91 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.4
Q ss_pred eEEeeeCCceeEeEEeeecC
Q psy13888 49 HFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 49 ~~LLstNdktiKLWkv~e~p 68 (70)
.+.=++-|+|||+|+|+++.
T Consensus 519 ~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred eeEeccCCceEEEEEeccce
Confidence 44445689999999998764
No 22
>KOG0647|consensus
Probab=75.66 E-value=2.4 Score=33.91 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=25.0
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
=|..++|++..+-..++-.+=|||||.|..++
T Consensus 115 pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 115 PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred ceeEEEEecCCCcceeEecccccceeecccCC
Confidence 47789999998855555556799999998764
No 23
>KOG1332|consensus
Probab=73.66 E-value=3 Score=32.85 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=24.5
Q ss_pred hceeEeeeCCCC------------ceEEeeeCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQ------------AHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~------------~~~LLstNdktiKLWkv~e 66 (70)
+|++.|.|..-. -.|.=.++|.+||+|+..+
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~ 194 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS 194 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC
Confidence 689999988322 2377778999999999865
No 24
>KOG1188|consensus
Probab=73.66 E-value=5 Score=32.45 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=27.4
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
-+|.++.+......-++-.+-|+|||||.++-+
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ 104 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEeecc
Confidence 578999998876667777788999999998754
No 25
>KOG0292|consensus
Probab=73.23 E-value=3.4 Score=37.43 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=23.1
Q ss_pred eeEeeeCCCCceEEee-eCCceeEeEEeeec
Q psy13888 38 KIRWLRRKNQAHFLLS-TNDFEFLIFIYSRF 67 (70)
Q Consensus 38 ~I~Wl~~~~~~~~LLs-tNdktiKLWkv~e~ 67 (70)
-|.|+.=..-.++++| +.|+.||||++++.
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 5788877655566665 57899999999885
No 26
>KOG0278|consensus
Probab=73.21 E-value=4.6 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=21.8
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-|..+-||..-. .+|=|+.||||.||.++
T Consensus 145 ~Ir~v~wc~eD~--~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 145 GIRTVLWCHEDK--CILSSADDKTVRLWDHR 173 (334)
T ss_pred cceeEEEeccCc--eEEeeccCCceEEEEec
Confidence 377788997643 45555999999999875
No 27
>KOG4283|consensus
Probab=71.75 E-value=5.4 Score=32.38 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=23.8
Q ss_pred hhceeEeeeCCCCceEEeee--CCceeEeEEeeec
Q psy13888 35 KINKIRWLRRKNQAHFLLST--NDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLst--NdktiKLWkv~e~ 67 (70)
-|-+++|+++. .++|.| -|.+||||.|+..
T Consensus 190 ~vlaV~Wsp~~---e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 190 GVLAVEWSPSS---EWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred ceEEEEeccCc---eeEEEecCCCceEEEEEeecc
Confidence 37889999874 566665 5999999999875
No 28
>PTZ00420 coronin; Provisional
Probab=69.90 E-value=5.4 Score=32.80 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=22.8
Q ss_pred hhhceeEeeeCCCCceEEe-eeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLL-STNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LL-stNdktiKLWkv~e 66 (70)
.+|+.|.|-+.. ..+|+ ++.|++|+||.+..
T Consensus 126 ~~V~sVaf~P~g--~~iLaSgS~DgtIrIWDl~t 157 (568)
T PTZ00420 126 KKISIIDWNPMN--YYIMCSSGFDSFVNIWDIEN 157 (568)
T ss_pred CcEEEEEECCCC--CeEEEEEeCCCeEEEEECCC
Confidence 478999997653 34444 46899999999853
No 29
>KOG0271|consensus
Probab=69.07 E-value=5.6 Score=33.04 Aligned_cols=29 Identities=10% Similarity=0.278 Sum_probs=21.2
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
-|.+||| ++...+-=++-|+|||+|+..+
T Consensus 249 ~VTCvrw---GG~gliySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 249 SVTCVRW---GGEGLIYSGSQDRTIKVWRALD 277 (480)
T ss_pred ceEEEEE---cCCceEEecCCCceEEEEEccc
Confidence 3567777 4455666677899999999765
No 30
>KOG0266|consensus
Probab=68.99 E-value=5.9 Score=30.47 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=22.8
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.=|+.+.|-+.+. .++=+++|++||+|.+.
T Consensus 204 ~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 204 RGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence 3477888877665 55556799999999993
No 31
>KOG2321|consensus
Probab=67.35 E-value=2.2 Score=36.75 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=35.9
Q ss_pred eEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 12 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
-|...+.+-.|=| .|--.-+=+|++|.|.++ +...-|+|++.+.+|||.
T Consensus 252 v~iyDLRa~~pl~--~kdh~~e~pi~~l~~~~~-~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 252 VLIYDLRASKPLL--VKDHGYELPIKKLDWQDT-DQQNKVVSMDKRILKIWD 300 (703)
T ss_pred EEEEEcccCCcee--ecccCCccceeeeccccc-CCCceEEecchHHhhhcc
Confidence 3444455555543 345556778999999999 556778999999999995
No 32
>KOG1063|consensus
Probab=67.28 E-value=9.9 Score=33.27 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=31.5
Q ss_pred ceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEee-eCCceeEeEEeeec
Q psy13888 9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLS-TNDFEFLIFIYSRF 67 (70)
Q Consensus 9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLs-tNdktiKLWkv~e~ 67 (70)
..++-..|...|+ |..||++..+ .++...+|.| +-|+.|+||||...
T Consensus 179 d~f~~v~el~GH~---DWIrsl~f~~---------~~~~~~~laS~SQD~yIRiW~i~~~ 226 (764)
T KOG1063|consen 179 DSFARVAELEGHT---DWIRSLAFAR---------LGGDDLLLASSSQDRYIRIWRIVLG 226 (764)
T ss_pred cceeEEEEeeccc---hhhhhhhhhc---------cCCCcEEEEecCCceEEEEEEEEec
Confidence 3567777777886 6777665543 3443444443 57999999999753
No 33
>KOG0272|consensus
Probab=66.95 E-value=5.5 Score=32.99 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=32.6
Q ss_pred eEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 12 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
+-...|.+|. +++-.|.|=|-.+...+.=.+-|+|+|||++++
T Consensus 208 ~~~~~l~gH~------------~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 208 NLLQTLRGHT------------SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ceeEEEeccc------------cceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 4456677775 568899998876545556667899999999987
No 34
>KOG0285|consensus
Probab=65.92 E-value=5.8 Score=32.76 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.1
Q ss_pred ceEEeeeCCceeEeEEee
Q psy13888 48 AHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 48 ~~~LLstNdktiKLWkv~ 65 (70)
.-|.-+++|+|||+|.+.
T Consensus 164 ~wf~tgs~DrtikIwDla 181 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLA 181 (460)
T ss_pred eeEEecCCCceeEEEEcc
Confidence 345566899999999874
No 35
>KOG1445|consensus
Probab=65.39 E-value=2 Score=37.91 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=26.0
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
-|||..|||-+-. ...++.+.-|-||+||.+..
T Consensus 677 ~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 677 GEKITSLRFHPLA-ADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred cceEEEEEecchh-hhHhhhhhccceeeeeehhh
Confidence 3899999996654 34566778899999999864
No 36
>KOG1007|consensus
Probab=65.01 E-value=7.2 Score=31.47 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=25.6
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeeecCC
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPR 69 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p~ 69 (70)
||++|.|+| | ..=|++--|..|-||.+.+-|+
T Consensus 125 ~i~cvew~P--n-s~klasm~dn~i~l~~l~ess~ 156 (370)
T KOG1007|consen 125 KINCVEWEP--N-SDKLASMDDNNIVLWSLDESSK 156 (370)
T ss_pred ceeeEEEcC--C-CCeeEEeccCceEEEEcccCcc
Confidence 999999999 3 3345666699999999988765
No 37
>KOG0313|consensus
Probab=64.57 E-value=7.2 Score=32.01 Aligned_cols=41 Identities=10% Similarity=0.310 Sum_probs=29.8
Q ss_pred EEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 13 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 13 ~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...+|-+|.. | |..++|.|... .+|+=.+-|+|+|||.++-
T Consensus 337 v~~s~~gH~n-w-----------Vssvkwsp~~~-~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 337 VSQSLIGHKN-W-----------VSSVKWSPTNE-FQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred eEEeeecchh-h-----------hhheecCCCCc-eEEEEEecCCeEEEEEecc
Confidence 3456777765 2 56788987643 5677778899999999874
No 38
>KOG0299|consensus
Probab=64.31 E-value=7 Score=32.53 Aligned_cols=30 Identities=7% Similarity=-0.007 Sum_probs=24.5
Q ss_pred EeeeC----CCCceEEeeeCCceeEeEEeeecCC
Q psy13888 40 RWLRR----KNQAHFLLSTNDFEFLIFIYSRFPR 69 (70)
Q Consensus 40 ~Wl~~----~~~~~~LLstNdktiKLWkv~e~p~ 69 (70)
.|+.. .+.+.+-..++|+.||||++.+.-|
T Consensus 381 ~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 381 FWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 57665 5677888999999999999998743
No 39
>KOG4810|consensus
Probab=63.11 E-value=2.2 Score=32.38 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=18.9
Q ss_pred eEeeeCCCCceEEeeeCCceeEe
Q psy13888 39 IRWLRRKNQAHFLLSTNDFEFLI 61 (70)
Q Consensus 39 I~Wl~~~~~~~~LLstNdktiKL 61 (70)
..-|...+...|++++|||+||+
T Consensus 162 qStL~kaGv~gfyvt~npKeIKI 184 (227)
T KOG4810|consen 162 QSTLEKAGVAGFYVTTNPKEIKI 184 (227)
T ss_pred HHHHHHCCCCceEeeecchhHhH
Confidence 34456678899999999999996
No 40
>KOG0277|consensus
Probab=61.52 E-value=7 Score=30.96 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=23.1
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-|-+|.|=. .+..+||+|+=|.|||||-..
T Consensus 106 EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 106 EVYSVDWNT-VRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred heEEecccc-ccceeEEeeccCCceEeecCC
Confidence 366778844 445789999999999999643
No 41
>KOG0293|consensus
Probab=60.84 E-value=4.4 Score=33.88 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.2
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
--+|.+.|= +.+..+|-=++.|+||++|....+
T Consensus 483 ~~vNcVswN-P~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 483 KTVNCVSWN-PADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceeeEEecC-CCCHHHhhccCCCCeEEEecCCcc
Confidence 347888884 455666777789999999998754
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=60.30 E-value=12 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=25.3
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
....|.+|.|-+. ...++.+++|++||||.+.
T Consensus 482 ~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~ 513 (793)
T PLN00181 482 SSNLVCAIGFDRD--GEFFATAGVNKKIKIFECE 513 (793)
T ss_pred CCCcEEEEEECCC--CCEEEEEeCCCEEEEEECC
Confidence 3567899998864 3567788999999999864
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.09 E-value=14 Score=31.32 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=30.1
Q ss_pred chhhhhceeEeeeCC-CCceEEeeeCCceeEeEEee
Q psy13888 31 EIEEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~ 65 (70)
...-.|.+++|-|.+ +.+++++=|+|.+|.++.+.
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 334568899999986 68999999999999999996
No 44
>KOG0302|consensus
Probab=59.73 E-value=8.9 Score=31.63 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=23.8
Q ss_pred hceeEeeeCCCCceEEeee-CCceeEeEEeeecC
Q psy13888 36 INKIRWLRRKNQAHFLLST-NDFEFLIFIYSRFP 68 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLst-NdktiKLWkv~e~p 68 (70)
||.|.|=++.+ ||+|+ .|+|++||.++++-
T Consensus 305 VNVISWnr~~~---lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 305 VNVISWNRREP---LLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred eeeEEccCCcc---eeeecCCCceEEEEEhhhcc
Confidence 89999977665 66665 57999999998763
No 45
>PF14470 bPH_3: Bacterial PH domain
Probab=59.50 E-value=17 Score=21.29 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=25.0
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
++|++|++...--.+.+.+.++++++++=.
T Consensus 52 ~~I~~v~~~~g~~~~~i~i~~~~~~~~i~~ 81 (96)
T PF14470_consen 52 DDITSVSFKKGILGGKITIETNGEKIKIDN 81 (96)
T ss_pred hheEEEEEEccccccEEEEEECCEEEEEEE
Confidence 579999998777778899999999998743
No 46
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=59.47 E-value=0.91 Score=31.42 Aligned_cols=29 Identities=41% Similarity=0.688 Sum_probs=23.3
Q ss_pred EeeeccCcc--cccccccch-hhhhceeEeee
Q psy13888 15 STFQSHEPE--FDYLKSLEI-EEKINKIRWLR 43 (70)
Q Consensus 15 teFQSHe~E--FDYLkSleI-eEKIn~I~Wl~ 43 (70)
.+|.-..|+ +++|.|++| |+.|..|||+-
T Consensus 140 ~~fe~~~p~~h~~~l~~~g~~~~~~~~ir~~s 171 (172)
T cd04790 140 IEFEKMEPEAHQEFLQSLGIPEDEIERIRAWS 171 (172)
T ss_pred HHHHHhCcHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 356666776 799999999 77899999874
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=59.42 E-value=13 Score=30.31 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=21.4
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|..+.|. +...++-++.|++||||.+.
T Consensus 663 ~V~~v~f~---~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 663 TVSYVRFV---DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CEEEEEEe---CCCEEEEEECCCEEEEEeCC
Confidence 56777785 34467777899999999875
No 48
>KOG0264|consensus
Probab=59.11 E-value=9.4 Score=31.25 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=21.6
Q ss_pred hhhceeEeeeCCCCceEEeee-CCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLST-NDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLst-NdktiKLWkv~e~ 67 (70)
..||+++|=+-. +.+|.|+ -||||.||.+++.
T Consensus 273 ~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL 305 (422)
T KOG0264|consen 273 AEVNCVAFNPFN--EFILATGSADKTVALWDLRNL 305 (422)
T ss_pred CceeEEEeCCCC--CceEEeccCCCcEEEeechhc
Confidence 457888875444 3444444 4999999998763
No 49
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=58.91 E-value=10 Score=24.71 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.6
Q ss_pred cchhhhhc---eeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 30 LEIEEKIN---KIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 30 leIeEKIn---~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
|+++..-+ +|+|...+|.....+.-|+|++.+=+|+
T Consensus 21 l~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~ 59 (88)
T cd07694 21 LHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLG 59 (88)
T ss_pred EecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeC
Confidence 55555445 8999999998888888999999886654
No 50
>KOG0290|consensus
Probab=58.19 E-value=13 Score=30.06 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=29.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeecCC
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPR 69 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p~ 69 (70)
.-||.|.|-|... +++.-.+.|..+-+|.+.+-|+
T Consensus 288 a~VNgIaWaPhS~-~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 288 ASVNGIAWAPHSS-SHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ccccceEecCCCC-ceeeecCCcceEEEEecccccc
Confidence 4599999988765 6777788899999999998876
No 51
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=57.88 E-value=9.1 Score=25.56 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=15.1
Q ss_pred hhhceeEeeeCCCCceEEe
Q psy13888 34 EKINKIRWLRRKNQAHFLL 52 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LL 52 (70)
.=|++|.|....++..|++
T Consensus 14 k~I~Ki~w~~~~~~~~~ii 32 (105)
T PF08366_consen 14 KAINKILWRTSRNGEPFII 32 (105)
T ss_pred ceeeEEEEEecCCCCcEEE
Confidence 4599999999987776655
No 52
>PTZ00420 coronin; Provisional
Probab=57.59 E-value=13 Score=30.61 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=23.9
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|.+|.|-+.+ ..+..++.|++|+||.++.
T Consensus 167 ~~~V~SlswspdG--~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 167 PKKLSSLKWNIKG--NLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCC--CEEEEEecCCEEEEEECCC
Confidence 3468889997653 4566677899999998753
No 53
>KOG0772|consensus
Probab=57.51 E-value=8.4 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.4
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p 68 (70)
|++-.|=| .|.+.||-+++|.|+.+|.|.+.-
T Consensus 271 lt~g~whP-~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 271 LTCGCWHP-DNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred eecccccc-CcccceEEecCCCcEEEEecCCch
Confidence 56667744 466899999999999999997653
No 54
>KOG0288|consensus
Probab=56.68 E-value=12 Score=31.12 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=21.7
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
|+.|.. .....++|-+|||++..||+|.+
T Consensus 222 it~~d~--d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 222 ITSIDF--DSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred cceeee--cCCCceEEeecCCCceeeeeccc
Confidence 455543 23346899999999999999975
No 55
>KOG0276|consensus
Probab=55.59 E-value=14 Score=32.43 Aligned_cols=33 Identities=12% Similarity=0.370 Sum_probs=24.9
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
|.=||+|..++.+..--++=.+.|.|||+|...
T Consensus 183 ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 183 EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 345999999988776444445678999999864
No 56
>KOG0295|consensus
Probab=54.26 E-value=16 Score=29.99 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=23.7
Q ss_pred chhhhhceeEeeeC------------CCCceEEee-eCCceeEeEEee
Q psy13888 31 EIEEKINKIRWLRR------------KNQAHFLLS-TNDFEFLIFIYS 65 (70)
Q Consensus 31 eIeEKIn~I~Wl~~------------~~~~~~LLs-tNdktiKLWkv~ 65 (70)
++|-=|.+|.|-+- .|+-++|.| .-|||||+|.|+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence 34555778888753 123356655 579999999986
No 57
>KOG0290|consensus
Probab=53.97 E-value=10 Score=30.57 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=29.4
Q ss_pred chhhhhceeEeeeCC-CCceEEeeeCCceeEeEEee
Q psy13888 31 EIEEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~ 65 (70)
+.+==.++|-|+|.. +..+-||+|-+--+.||+|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~ 129 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIG 129 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEecc
Confidence 344456899999986 58889999999999999998
No 58
>KOG0279|consensus
Probab=50.44 E-value=13 Score=29.52 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=12.1
Q ss_pred eEEeeeCCceeEeEEe
Q psy13888 49 HFLLSTNDFEFLIFIY 64 (70)
Q Consensus 49 ~~LLstNdktiKLWkv 64 (70)
.++=..-|||||||.+
T Consensus 119 qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 119 QIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeecCCCcceeeeeee
Confidence 3444468999999986
No 59
>KOG0266|consensus
Probab=50.02 E-value=20 Score=27.60 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=22.0
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
|+++.+-+.+ +.++=.+.|+||++|.+..
T Consensus 249 v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 249 VTSVAFSPDG--NLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred eEEEEecCCC--CEEEEecCCCcEEEEeccC
Confidence 3666665555 6777788999999999864
No 60
>KOG0283|consensus
Probab=48.69 E-value=12 Score=32.41 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=26.0
Q ss_pred EEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEe-eeCCceeEeEEee
Q psy13888 13 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLL-STNDFEFLIFIYS 65 (70)
Q Consensus 13 ~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LL-stNdktiKLWkv~ 65 (70)
.+.+|..|-.+ |..|.|=+ +.||| |+=|||++||.+.
T Consensus 361 P~~ef~GHt~D------------ILDlSWSK----n~fLLSSSMDKTVRLWh~~ 398 (712)
T KOG0283|consen 361 PFCEFKGHTAD------------ILDLSWSK----NNFLLSSSMDKTVRLWHPG 398 (712)
T ss_pred chhhhhccchh------------heeccccc----CCeeEeccccccEEeecCC
Confidence 34566666654 67888854 34555 5679999999875
No 61
>KOG4328|consensus
Probab=48.48 E-value=13 Score=31.15 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=22.2
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.||+.|- |++.....++=+++|+|.|||.+++
T Consensus 323 kKI~sv~-~NP~~p~~laT~s~D~T~kIWD~R~ 354 (498)
T KOG4328|consen 323 KKITSVA-LNPVCPWFLATASLDQTAKIWDLRQ 354 (498)
T ss_pred cccceee-cCCCCchheeecccCcceeeeehhh
Confidence 3777776 3334444555667999999999875
No 62
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=47.07 E-value=37 Score=22.88 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=20.6
Q ss_pred ceeEeeeCC--CCceEEeeeCCceeEeEEe
Q psy13888 37 NKIRWLRRK--NQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 37 n~I~Wl~~~--~~~~~LLstNdktiKLWkv 64 (70)
+++--+.-. +.+.+|+.|.|..|++||=
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~ 32 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFKG 32 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEeC
Confidence 444445433 4588999999999999983
No 63
>KOG1517|consensus
Probab=46.44 E-value=17 Score=33.64 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=34.8
Q ss_pred EEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 14 YSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 14 ~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
++-|..+.|-+ -+|.++..++....+.+|..+-|+.||+||=+..
T Consensus 1099 l~~F~n~~~~~---------t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1099 LNGFDNGAFPD---------TRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred eccccCCCCCC---------CccceeeeecccchhheeeeccCceEEEeccccc
Confidence 34455555444 3577888899999999999999999999996653
No 64
>KOG0310|consensus
Probab=46.28 E-value=24 Score=29.52 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=31.5
Q ss_pred ccCcccccccc-------cchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 19 SHEPEFDYLKS-------LEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 19 SHe~EFDYLkS-------leIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.|--=|| +|| -+-+.-++.++++++.| -+|+-...|+++|+|-++.
T Consensus 90 G~V~vfD-~k~r~iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 90 GHVKVFD-MKSRVILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred CcEEEec-cccHHHHHHHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCC
Confidence 3445577 666 23345688899988876 3555566788999998765
No 65
>KOG0272|consensus
Probab=45.63 E-value=19 Score=29.98 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=22.3
Q ss_pred ccccccc-chhhhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 24 FDYLKSL-EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 24 FDYLkSl-eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
|--|||| +=|.||-++. -..++.-++=++-|+|||||.
T Consensus 420 ~~~~ksLaGHe~kV~s~D--is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 WSPLKSLAGHEGKVISLD--ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccchhhcCCccceEEEE--eccCCceEEEeccCceeeecc
Confidence 4445554 2345665543 223444455567899999995
No 66
>KOG1240|consensus
Probab=45.56 E-value=23 Score=33.07 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=21.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
+++++|.=.+. ..+.|+=.++|+|||+|+..+.
T Consensus 1049 ~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~ 1081 (1431)
T KOG1240|consen 1049 SAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKL 1081 (1431)
T ss_pred ccccceeecCC-CCceEEEecCCceEEEeeehhh
Confidence 45555543222 2356777789999999998764
No 67
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=45.26 E-value=78 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=22.9
Q ss_pred hhhceeEeeeCCCCc-eEEeeeC-CceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQA-HFLLSTN-DFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~-~~LLstN-dktiKLWkv~e 66 (70)
..+..+.+. ..+.. .++.++. |+++++|.+..
T Consensus 110 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 110 SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred CceeeEEEE-CCCcceEEeccCCCCccEEEEEecC
Confidence 468888887 66555 4555455 99999998863
No 68
>KOG0319|consensus
Probab=44.98 E-value=20 Score=31.55 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=16.6
Q ss_pred CCCceEEeeeCCceeEeEEeee
Q psy13888 45 KNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 45 ~~~~~~LLstNdktiKLWkv~e 66 (70)
.+.+-|+..++|.|||+|.+..
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred cCccEEEEecCCceEEEecCCC
Confidence 3445567778999999998754
No 69
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=44.91 E-value=4.9 Score=26.37 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=26.0
Q ss_pred cccccccccchhhhhceeEeeeCCCCceEEeeeCC
Q psy13888 22 PEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56 (70)
Q Consensus 22 ~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNd 56 (70)
.|..||++++-+++...++=+-..+...+++|-|.
T Consensus 57 ~E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~ 91 (127)
T PF02603_consen 57 TESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGL 91 (127)
T ss_dssp HHHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT
T ss_pred HHHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcC
Confidence 58999999999999999998888776666665543
No 70
>PF11483 DUF3209: Protein of unknown function (DUF3209); InterPro: IPR021577 This family of proteins has no known function. ; PDB: 2EHW_D.
Probab=44.62 E-value=5.8 Score=27.77 Aligned_cols=18 Identities=28% Similarity=0.715 Sum_probs=10.4
Q ss_pred eccCcccccccccchhhh
Q psy13888 18 QSHEPEFDYLKSLEIEEK 35 (70)
Q Consensus 18 QSHe~EFDYLkSleIeEK 35 (70)
-+-+|++|||+++-|.-|
T Consensus 71 ~~~dP~~~YlRg~Lvavr 88 (123)
T PF11483_consen 71 DSDDPKYDYLRGRLVAVR 88 (123)
T ss_dssp STT-H---HHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHH
Confidence 356899999999987643
No 71
>KOG0645|consensus
Probab=43.38 E-value=29 Score=27.57 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=18.8
Q ss_pred eee--CCCCceEEeeeCCceeEeEEe
Q psy13888 41 WLR--RKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 41 Wl~--~~~~~~~LLstNdktiKLWkv 64 (70)
|+- .++.+.+..+++|.|+++|+.
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeee
Confidence 554 344578899999999999994
No 72
>KOG0643|consensus
Probab=43.22 E-value=21 Score=28.56 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.6
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
-.-+||.|+ .......|+-++-|.|.|||.+..
T Consensus 189 h~~~Ind~q--~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 189 HSSKINDLQ--FSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred hcccccccc--ccCCcceEEecccCccceeeeccc
Confidence 345899988 455567999999999999998764
No 73
>KOG0313|consensus
Probab=42.51 E-value=28 Score=28.67 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=31.5
Q ss_pred eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+=..++..++|- |++-+|.|++ .....=++=|+|||.|.+.
T Consensus 249 ~r~P~vtl~GHt------------~~Vs~V~w~d---~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 249 TRTPLVTLEGHT------------EPVSSVVWSD---ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ccCceEEecccc------------cceeeEEEcC---CCceEeecccceEEEEEee
Confidence 334566777774 6899999999 4456667889999999875
No 74
>KOG0294|consensus
Probab=42.44 E-value=44 Score=27.12 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=30.9
Q ss_pred eEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 12 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..+++|-.|+. +|..|.-+.......++=.+-|+.||+|++...
T Consensus 240 ~~~~~~~AH~~------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 240 TPLTEFLAHEN------------RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccceeeecchh------------heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 45677777764 677777665555444444568999999999875
No 75
>KOG0305|consensus
Probab=42.22 E-value=24 Score=29.09 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=23.0
Q ss_pred hhhceeEeeeCCCCceEEe---eeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLL---STNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LL---stNdktiKLWkv~e 66 (70)
.-+.+|-|||-... +|. -|+|++||+|.+..
T Consensus 344 aAVKA~awcP~q~~--lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 344 AAVKALAWCPWQSG--LLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred eeeeEeeeCCCccC--ceEEcCCCcccEEEEEEcCC
Confidence 34778999998653 333 36999999999863
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=42.02 E-value=38 Score=22.12 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=20.2
Q ss_pred hhhhceeEeeeCCCCceEEeee--CCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLST--NDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLst--NdktiKLWkv~e 66 (70)
...+..+.|-+.+. .|+++ ++.+|++|.+..
T Consensus 248 ~~~~~~~~~~~~g~---~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 248 GQRVWQLAFTPDEK---YLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CCCcceEEECCCCC---EEEEEcCCCCeEEEEECCC
Confidence 34566777755433 44444 589999998764
No 77
>KOG0315|consensus
Probab=41.95 E-value=28 Score=27.62 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=26.5
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
-||.| |..+|+.+++.+++++.|.+|.+.++
T Consensus 126 pVn~v--vlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 126 PVNTV--VLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred CcceE--EecCCcceEEeecCCCcEEEEEccCC
Confidence 45655 57889999999999999999999875
No 78
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=40.80 E-value=18 Score=18.75 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=13.4
Q ss_pred hceeEeeeCCCCceEE
Q psy13888 36 INKIRWLRRKNQAHFL 51 (70)
Q Consensus 36 In~I~Wl~~~~~~~~L 51 (70)
|.+|.|..+.+...||
T Consensus 3 ikCiNWFE~~ge~r~l 18 (22)
T PF08452_consen 3 IKCINWFESRGEERFL 18 (22)
T ss_pred cEEeehhhhCCceeEE
Confidence 6799999998877765
No 79
>KOG0268|consensus
Probab=40.79 E-value=19 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=17.2
Q ss_pred ceEEeeeCCceeEeEEeeecC
Q psy13888 48 AHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 48 ~~~LLstNdktiKLWkv~e~p 68 (70)
.-++-.+.|||||+|++.-.|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~~p 140 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDGPP 140 (433)
T ss_pred cceEEecCCcceeeeeccCCc
Confidence 678888999999999976544
No 80
>KOG1240|consensus
Probab=40.62 E-value=14 Score=34.37 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=21.9
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
|+.+--|... ...++.+.+|+.|||||
T Consensus 1405 Itdma~~~~~-q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1405 ITDMATLKSE-QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhccC-ccEEEEecCCCeeeecC
Confidence 6666667666 67788899999999997
No 81
>KOG0301|consensus
Probab=40.29 E-value=19 Score=31.47 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=11.0
Q ss_pred eEEeeeCCceeEeEEe
Q psy13888 49 HFLLSTNDFEFLIFIY 64 (70)
Q Consensus 49 ~~LLstNdktiKLWkv 64 (70)
.+|=.+-||||||||=
T Consensus 153 ~~vTgsaDKtIklWk~ 168 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG 168 (745)
T ss_pred cEEeccCcceeeeccC
Confidence 5666667777777763
No 82
>KOG0310|consensus
Probab=40.14 E-value=39 Score=28.33 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=28.5
Q ss_pred EEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 14 YSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 14 ~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
-++.+.|+ ||.|+..+ . +.|...++=-+=|++||||..+-.
T Consensus 146 ~~~l~~ht---DYVR~g~~---------~-~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 146 QAELSGHT---DYVRCGDI---------S-PANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred EEEecCCc---ceeEeecc---------c-cCCCeEEEecCCCceEEEEEeccC
Confidence 56888998 89887654 3 334444555567999999987643
No 83
>KOG4532|consensus
Probab=39.89 E-value=21 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.7
Q ss_pred hhhhceeEeeeCC--CCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRK--NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~--~~~~~LLstNdktiKLWkv~e 66 (70)
.--+|.|.-.++. +.++++++.||+|+|..-|.-
T Consensus 112 d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~ 147 (344)
T KOG4532|consen 112 DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG 147 (344)
T ss_pred cccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence 3456666666653 578899999999999987754
No 84
>KOG0302|consensus
Probab=39.04 E-value=38 Score=28.09 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=32.3
Q ss_pred ccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888 23 EFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 23 EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p 68 (70)
+|+|=|. =|.+|+|=+... +-++.|+-|..|-||.++--+
T Consensus 342 ~fk~Hk~-----pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 342 TFKYHKA-----PITSIEWHPHED-SVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eEEeccC-----CeeEEEeccccC-ceEEeccCCCcEEEEEeeccC
Confidence 6777765 599999976654 689999999999999987543
No 85
>KOG0271|consensus
Probab=38.98 E-value=41 Score=28.10 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=20.2
Q ss_pred hceeEeeeCCCCceEEee-eCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLS-TNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLs-tNdktiKLWkv~e 66 (70)
+=+|.|-. .+.+|+| +-|.|+|+|.|+-
T Consensus 412 VYqvawsa---DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 412 VYQVAWSA---DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eEEEEecc---CccEEEEcCCCceEEEEEeee
Confidence 55778854 3456665 5799999999863
No 86
>KOG0270|consensus
Probab=38.63 E-value=29 Score=28.87 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=16.6
Q ss_pred CCCceEEeeeCCceeEeEEeee
Q psy13888 45 KNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 45 ~~~~~~LLstNdktiKLWkv~e 66 (70)
.+.+.+...+-||++|||++..
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred CCCcceeeccccceEEEEeecC
Confidence 4455566667899999999864
No 87
>KOG0305|consensus
Probab=37.53 E-value=38 Score=27.91 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.9
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
++=|.++.|.+.++ ++-+-|-+++|.||.+.+.
T Consensus 217 ~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred CCceEEEEECCCCC--EEEEeecCCeEEEEehhhc
Confidence 78899999998776 8999999999999997653
No 88
>KOG1008|consensus
Probab=37.35 E-value=21 Score=31.43 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=39.4
Q ss_pred ccCcccc-------cccccchhhh-----hceeEeeeCCCCceEEeeeCCceeEeEEeeecCC
Q psy13888 19 SHEPEFD-------YLKSLEIEEK-----INKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFPR 69 (70)
Q Consensus 19 SHe~EFD-------YLkSleIeEK-----In~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p~ 69 (70)
+--+-|| ||.++--.|+ +-+|.|||..++-...|+-+..||.|.-+...+.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t 279 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGT 279 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence 3445667 4444444455 8899999999998999999999999999887664
No 89
>KOG0282|consensus
Probab=36.47 E-value=37 Score=28.58 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=24.6
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
-||.|.+++. +..|+.|+.|+++.+|-...
T Consensus 344 ~i~~i~F~~~--g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 344 AILDITFVDE--GRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred heeeeEEccC--CceEeeeccCccEEEEEcCC
Confidence 3788888764 46999999999999998654
No 90
>KOG4283|consensus
Probab=35.73 E-value=39 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=23.8
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
|...-|.|--+ -.|.-|+=|+|+|+|.+.
T Consensus 104 iss~~WyP~Dt-GmFtssSFDhtlKVWDtn 132 (397)
T KOG4283|consen 104 ISSAIWYPIDT-GMFTSSSFDHTLKVWDTN 132 (397)
T ss_pred eeeeEEeeecC-ceeecccccceEEEeecc
Confidence 55678988766 488889999999999865
No 91
>KOG0321|consensus
Probab=35.09 E-value=32 Score=30.08 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=23.7
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
|=.+.|.+ +...|+=..-|.|||+|.|.+
T Consensus 103 ifDl~wap--ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 103 IFDLKWAP--GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred eEeeccCC--CceeEEEccCCceeeeeeecc
Confidence 55688998 666777788999999999865
No 92
>KOG0265|consensus
Probab=33.06 E-value=49 Score=26.59 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=31.5
Q ss_pred eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
+-.+.-..+.|+-| |+.|++-| ....|+=++-|+-|-||+|++
T Consensus 36 l~ap~m~l~gh~ge------------I~~~~F~P--~gs~~aSgG~Dr~I~LWnv~g 78 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGE------------IYTIKFHP--DGSCFASGGSDRAIVLWNVYG 78 (338)
T ss_pred ccchhhhcCCCcce------------EEEEEECC--CCCeEeecCCcceEEEEeccc
Confidence 44444455555554 89999888 556777778999999999875
No 93
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=32.87 E-value=41 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.400 Sum_probs=25.0
Q ss_pred ccccchhhh--hceeEeeeCCCCceEE-eee-CCceeEeEEee
Q psy13888 27 LKSLEIEEK--INKIRWLRRKNQAHFL-LST-NDFEFLIFIYS 65 (70)
Q Consensus 27 LkSleIeEK--In~I~Wl~~~~~~~~L-Lst-NdktiKLWkv~ 65 (70)
...++++.+ |..+.|-|.++ .|+ +++ -++.|.||.+.
T Consensus 51 ~~~i~l~~~~~I~~~~WsP~g~--~favi~g~~~~~v~lyd~~ 91 (194)
T PF08662_consen 51 VESIELKKEGPIHDVAWSPNGN--EFAVIYGSMPAKVTLYDVK 91 (194)
T ss_pred cceeeccCCCceEEEEECcCCC--EEEEEEccCCcccEEEcCc
Confidence 455555544 99999988653 554 444 36789999874
No 94
>KOG0284|consensus
Probab=32.85 E-value=46 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=24.2
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
|-|..+..-+ |.+.|+=.+.|.+||||....
T Consensus 181 eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 181 EAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhhheeccCC--CCceeEEecCCCeEEEEeccC
Confidence 4566666444 888999999999999998653
No 95
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=32.36 E-value=17 Score=26.62 Aligned_cols=19 Identities=47% Similarity=0.787 Sum_probs=17.6
Q ss_pred eEEEeeeccCccccccccc
Q psy13888 12 NVYSTFQSHEPEFDYLKSL 30 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSl 30 (70)
+-+|+|.+|+--=|||+||
T Consensus 70 ~a~T~F~G~~lTrD~lrSl 88 (203)
T PRK04057 70 KAYTRFIGHELTRDYLRSL 88 (203)
T ss_pred EEEEEEeeeEecHHHHHhH
Confidence 5689999999999999998
No 96
>KOG0318|consensus
Probab=31.84 E-value=47 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.8
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+|.+.|+.. +.++=|+-|-.||+|.|.
T Consensus 576 Vn~v~wlde---~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 576 VNSVAWLDE---STVVSSGQDANIKVWNVT 602 (603)
T ss_pred ceeEEEecC---ceEEeccCcceeEEeccc
Confidence 799999975 457778899999999874
No 97
>KOG0286|consensus
Probab=31.56 E-value=40 Score=27.12 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=19.4
Q ss_pred CCceEEeeeCCceeEeEEeeec
Q psy13888 46 NQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 46 ~~~~~LLstNdktiKLWkv~e~ 67 (70)
+.+.|+=.+=|++.|||.+++.
T Consensus 198 ~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 198 DGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred CCCeEEecccccceeeeeccCc
Confidence 7788999999999999999763
No 98
>KOG1034|consensus
Probab=30.58 E-value=38 Score=27.66 Aligned_cols=28 Identities=4% Similarity=0.095 Sum_probs=19.6
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
|.+|.|=..+. .++=++-|++||||++.
T Consensus 184 VLSvD~~~~gd--~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 184 VLSVDFSLDGD--RIASCGMDHSLKLWRLN 211 (385)
T ss_pred EEEEEEcCCCC--eeeccCCcceEEEEecC
Confidence 45566644443 55556789999999998
No 99
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=30.17 E-value=55 Score=25.41 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=16.8
Q ss_pred CCceEEeeeCCceeEeEEeee
Q psy13888 46 NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 46 ~~~~~LLstNdktiKLWkv~e 66 (70)
+...++-.|.|+++|+|.+..
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t 249 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLET 249 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCeEEEEECCC
Confidence 455666889999999998753
No 100
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=30.11 E-value=8.5 Score=17.71 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=8.5
Q ss_pred Ccccccccccch
Q psy13888 21 EPEFDYLKSLEI 32 (70)
Q Consensus 21 e~EFDYLkSleI 32 (70)
+|-+|||+++++
T Consensus 19 ~~~~~~l~~~g~ 30 (31)
T smart00733 19 KPKVEFLKELGF 30 (31)
T ss_pred hHHHHHHHHcCC
Confidence 456788887765
No 101
>KOG0641|consensus
Probab=29.90 E-value=49 Score=26.38 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=24.0
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv 64 (70)
..|.-++||-++. --||-|+-|||+.||-+
T Consensus 319 kdk~i~~rwh~~d--~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 319 KDKAIQCRWHPQD--FSFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEecCcc--ceeeeccCcceEEEecc
Confidence 4577789997664 35888999999999965
No 102
>KOG0640|consensus
Probab=29.41 E-value=47 Score=27.35 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=16.6
Q ss_pred CCCceEEeeeCCceeEeEEeee
Q psy13888 45 KNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 45 ~~~~~~LLstNdktiKLWkv~e 66 (70)
+|+--+|-|+-|-++|||.++-
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred cCCeEEeecCCcceeeeeeecC
Confidence 4555566678899999998863
No 103
>KOG0646|consensus
Probab=29.36 E-value=74 Score=26.66 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.2
Q ss_pred CCceEEeeeCCceeEeEEeee
Q psy13888 46 NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 46 ~~~~~LLstNdktiKLWkv~e 66 (70)
..+.++=++-|+|||||.++-
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred ccceEEEecCCceEEEEEecc
Confidence 456777788999999999873
No 104
>KOG0300|consensus
Probab=28.89 E-value=41 Score=27.86 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=15.7
Q ss_pred ceEEeeeCCceeEeEEeeec
Q psy13888 48 AHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 48 ~~~LLstNdktiKLWkv~e~ 67 (70)
...+-++.|+|||+|.+.+-
T Consensus 369 d~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 369 DRVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred CceeecCCCceEEEeeeccc
Confidence 34566788999999998763
No 105
>KOG0315|consensus
Probab=28.77 E-value=87 Score=24.95 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=29.3
Q ss_pred ceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
.++...+.||.|+- | |.+++ -++..-.+.-++-|||+|+|++...
T Consensus 203 s~l~P~~k~~ah~~---~---------il~C~--lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 203 SELEPVHKFQAHNG---H---------ILRCL--LSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ccceEhhheecccc---e---------EEEEE--ECCCCcEEEeecCCceEEEEecCCc
Confidence 45666777777764 1 22222 3445556666788999999998653
No 106
>KOG1407|consensus
Probab=28.59 E-value=66 Score=25.65 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=23.9
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
-+.++-|=+ +++..|.-++-||+|.+|.++..
T Consensus 66 svdql~w~~-~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 66 SVDQLCWDP-KHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred chhhheeCC-CCCcceEEecCCceEEEEEeccC
Confidence 355666654 44578899999999999998753
No 107
>KOG0283|consensus
Probab=27.48 E-value=67 Score=28.03 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=25.9
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
||..+..++.... .+|+|+||--|.|....+
T Consensus 503 rITG~Q~~p~~~~-~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 503 RITGLQFFPGDPD-EVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eeeeeEecCCCCC-eEEEecCCCceEEEeccc
Confidence 6999998877654 899999999999987743
No 108
>KOG0308|consensus
Probab=27.47 E-value=57 Score=28.68 Aligned_cols=20 Identities=10% Similarity=0.174 Sum_probs=15.1
Q ss_pred CceEEeeeCCceeEeEEeee
Q psy13888 47 QAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 47 ~~~~LLstNdktiKLWkv~e 66 (70)
+..+|=++-|.|||||.+.+
T Consensus 225 Gt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CCeEeecCCCceEEeeeccc
Confidence 44555667789999999865
No 109
>KOG1587|consensus
Probab=25.99 E-value=83 Score=26.20 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=27.0
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
.+=+.+|.|++......|+-++-|+.|+.|.+...
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l 325 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDML 325 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeecccc
Confidence 46688999999875566666666999999987643
No 110
>KOG0267|consensus
Probab=25.53 E-value=29 Score=30.78 Aligned_cols=17 Identities=0% Similarity=-0.021 Sum_probs=13.5
Q ss_pred EEeeeCCceeEeEEeee
Q psy13888 50 FLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 50 ~LLstNdktiKLWkv~e 66 (70)
+--.++|+|||+|.+.+
T Consensus 85 laagsasgtiK~wDlee 101 (825)
T KOG0267|consen 85 LAAGSASGTIKVWDLEE 101 (825)
T ss_pred hcccccCCceeeeehhh
Confidence 33468999999999865
No 111
>KOG0296|consensus
Probab=25.30 E-value=57 Score=26.77 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=28.5
Q ss_pred cccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 28 KSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 28 kSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
++++-|+-|.+++|++ ..-++-+|-|.+|.+|..+
T Consensus 322 ~~c~he~~V~~l~w~~---t~~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 322 HICEHEDGVTKLKWLN---TDYLLTACANGKVRQWDAR 356 (399)
T ss_pred eeccCCCceEEEEEcC---cchheeeccCceEEeeecc
Confidence 3578888899999998 3456778899999999865
No 112
>KOG0308|consensus
Probab=24.91 E-value=63 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=25.6
Q ss_pred cccccccccchhhhhceeEeeeC----CCCceEEeeeCCceeEeEEeee
Q psy13888 22 PEFDYLKSLEIEEKINKIRWLRR----KNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 22 ~EFDYLkSleIeEKIn~I~Wl~~----~~~~~~LLstNdktiKLWkv~e 66 (70)
|+=-|+-|+|.- -.|++. .++.-++=.++|-|||||++.-
T Consensus 61 ~s~~~~asme~H-----sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 61 PSTPYIASMEHH-----SDWVNDIILCGNGKTLISASSDTTVKVWNAHK 104 (735)
T ss_pred cccchhhhhhhh-----HhHHhhHHhhcCCCceEEecCCceEEEeeccc
Confidence 333355555542 235543 4555788888999999999753
No 113
>KOG0278|consensus
Probab=24.78 E-value=83 Score=25.24 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=30.0
Q ss_pred cccccccchhhh-------hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 24 FDYLKSLEIEEK-------INKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 24 FDYLkSleIeEK-------In~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
|||---.||+-= |-++|+-| +...+-.-+-|+||.||++.
T Consensus 251 fDy~TgeEi~~~nkgh~gpVhcVrFSP--dGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 251 FDYNTGEEIGSYNKGHFGPVHCVRFSP--DGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EeccCCceeeecccCCCCceEEEEECC--CCceeeccCCCceEEEEEec
Confidence 788888888762 55666544 44577778899999999975
No 114
>KOG0288|consensus
Probab=24.63 E-value=40 Score=28.12 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=23.2
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
-|+++.|.+.+ ..+|-+.|++.+-||+
T Consensus 433 aI~s~~W~~sG--~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 433 AITSLSWNPSG--SGLLSADKQKAVTLWT 459 (459)
T ss_pred ceEEEEEcCCC--chhhcccCCcceEecC
Confidence 69999999855 4788889999999995
No 115
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=24.37 E-value=18 Score=24.25 Aligned_cols=19 Identities=21% Similarity=0.644 Sum_probs=16.6
Q ss_pred Ccccccccccchhhhhcee
Q psy13888 21 EPEFDYLKSLEIEEKINKI 39 (70)
Q Consensus 21 e~EFDYLkSleIeEKIn~I 39 (70)
|-|.||+...|.+.|||+.
T Consensus 32 DLe~D~iNp~d~c~~lN~l 50 (128)
T PF03311_consen 32 DLECDYINPIDLCSRLNPL 50 (128)
T ss_pred HHHhccCCHHHHHHHHHHH
Confidence 4589999999999999963
No 116
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=24.28 E-value=25 Score=25.38 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.8
Q ss_pred EEEeeeccCccccccccc
Q psy13888 13 VYSTFQSHEPEFDYLKSL 30 (70)
Q Consensus 13 ~~teFQSHe~EFDYLkSl 30 (70)
-+|+|.+|+.-=|||+||
T Consensus 77 a~T~F~G~elt~D~lrSl 94 (194)
T PF01015_consen 77 ALTNFHGMELTRDKLRSL 94 (194)
T ss_dssp EEEEEEEEE--HHHHHHC
T ss_pred EEEEEcceecchhhhhcc
Confidence 489999999999999998
No 117
>KOG1455|consensus
Probab=24.27 E-value=31 Score=27.24 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=8.6
Q ss_pred eeeCCceeEeE
Q psy13888 52 LSTNDFEFLIF 62 (70)
Q Consensus 52 LstNdktiKLW 62 (70)
.++.||||||+
T Consensus 272 A~S~DKTlKlY 282 (313)
T KOG1455|consen 272 ASSSDKTLKLY 282 (313)
T ss_pred ccCCCCceecc
Confidence 47888888886
No 118
>KOG0301|consensus
Probab=23.78 E-value=79 Score=27.89 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.0
Q ss_pred eeCCCCceEEeeeCCceeEeEEe
Q psy13888 42 LRRKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 42 l~~~~~~~~LLstNdktiKLWkv 64 (70)
|.--..++||=.+||+.|++|.+
T Consensus 185 L~vl~~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 185 LAVLDDSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred eEEecCCCeEeecCCceEEEEec
Confidence 34445678999999999999998
No 119
>KOG0285|consensus
Probab=23.74 E-value=85 Score=26.19 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=26.7
Q ss_pred ccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888 29 SLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 29 SleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p 68 (70)
|+|-|.-|-.-- =.++...++-..-|||||+||=.|+.
T Consensus 405 Sl~sEagI~as~--fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 405 SLESEAGIFASC--FDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred ccccccceeEEe--ecccCceEEeccCCcceEEEeccccc
Confidence 566666665443 23455677777889999999987764
No 120
>PHA02119 hypothetical protein
Probab=23.60 E-value=22 Score=23.44 Aligned_cols=17 Identities=41% Similarity=0.708 Sum_probs=13.3
Q ss_pred cccccccchhhhhceeE
Q psy13888 24 FDYLKSLEIEEKINKIR 40 (70)
Q Consensus 24 FDYLkSleIeEKIn~I~ 40 (70)
-|||+||+-+-|-.+-|
T Consensus 60 vdylr~lgy~~~~~s~r 76 (87)
T PHA02119 60 VDYLRSLGYDAKSDSFR 76 (87)
T ss_pred HHHHHHccchhcccccc
Confidence 49999999998765543
No 121
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=22.81 E-value=29 Score=22.65 Aligned_cols=14 Identities=50% Similarity=0.631 Sum_probs=9.6
Q ss_pred ccccccchhhhhce
Q psy13888 25 DYLKSLEIEEKINK 38 (70)
Q Consensus 25 DYLkSleIeEKIn~ 38 (70)
|||+|.+|+-+|..
T Consensus 18 DYl~sqgI~~~i~~ 31 (101)
T PF12122_consen 18 DYLASQGIELQIEP 31 (101)
T ss_dssp HHHHHTT--EEEE-
T ss_pred HHHHHCCCeEEEEE
Confidence 99999999877764
No 122
>KOG0303|consensus
Probab=22.75 E-value=66 Score=26.92 Aligned_cols=31 Identities=10% Similarity=0.252 Sum_probs=0.0
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
+..|.||+-.. +.+-=.+.|-||++|+|-+.
T Consensus 84 vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~ 114 (472)
T KOG0303|consen 84 VLDIDWCPFND-CVIASGSEDTKVMVWQIPEN 114 (472)
T ss_pred ccccccCccCC-ceeecCCCCceEEEEECCCc
No 123
>KOG0649|consensus
Probab=22.64 E-value=74 Score=25.42 Aligned_cols=38 Identities=24% Similarity=0.172 Sum_probs=30.6
Q ss_pred EEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 13 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 13 ~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
.+-.||.|+----||++. ..||||+-|+.|+=|+-.|.
T Consensus 54 ~iv~eqahdgpiy~~~f~-----------------d~~Lls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH-----------------DDFLLSGGDGLVYGWEWNEE 91 (325)
T ss_pred ceeeccccCCCeeeeeee-----------------hhheeeccCceEEEeeehhh
Confidence 344569999888888776 46999999999999987764
No 124
>KOG0647|consensus
Probab=22.61 E-value=1.1e+02 Score=24.86 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=26.7
Q ss_pred chhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+++-=+-.+.|-+.+ +...+++-||.+|||.+.
T Consensus 70 ~~~~PvL~v~Wsddg--skVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDG--SKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred ccCCCeEEEEEccCC--ceEEeeccCCceEEEEcc
Confidence 344557789998877 688899999999999874
No 125
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.60 E-value=1e+02 Score=19.40 Aligned_cols=21 Identities=29% Similarity=0.524 Sum_probs=16.2
Q ss_pred CCceEEeeeCCceeEeEEeee
Q psy13888 46 NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 46 ~~~~~LLstNdktiKLWkv~e 66 (70)
..++|=+-.-|++||++|..+
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~ 48 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDE 48 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEET
T ss_pred cCCEEEEEecCCeEEEEEeCC
Confidence 356788888999999999864
No 126
>KOG0274|consensus
Probab=22.41 E-value=1.1e+02 Score=25.17 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.1
Q ss_pred CceEEeeeCCceeEeEEeeec
Q psy13888 47 QAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 47 ~~~~LLstNdktiKLWkv~e~ 67 (70)
...+|.+++|++++||.+...
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cceEEEEecCCeeEEEecccC
Confidence 578999999999999987654
No 127
>KOG2523|consensus
Probab=22.11 E-value=1.5e+02 Score=22.09 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=33.2
Q ss_pred cccccccc--chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888 23 EFDYLKSL--EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 23 EFDYLkSl--eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p 68 (70)
+|++|+++ ||-+|=..++-.++.+. ..|+|-| +.+-+++.++.|
T Consensus 32 ~yp~le~~~~ellpKk~~~~vikC~d~-i~L~s~~-G~~~fF~~~dg~ 77 (181)
T KOG2523|consen 32 QYPGLEQVIDELLPKKEQYKVIKCKDH-IELLSVN-GEVLFFCHRDGP 77 (181)
T ss_pred hCcchHHHHHHhccCCCceEEEEccCe-eEEEEeC-CEEEEEEecCCC
Confidence 68888886 56678888888888773 4555555 899999988754
No 128
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=21.94 E-value=72 Score=22.45 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.4
Q ss_pred hceeEeeeCCCCceEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLST 54 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLst 54 (70)
+|.||+++..+..+||-.+
T Consensus 20 LnriR~V~~~kg~pFlac~ 38 (137)
T PF12101_consen 20 LNRIREVTPRKGDPFLACT 38 (137)
T ss_pred eccceEccCCCCCeeEEEE
Confidence 4889999998888887543
No 129
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=21.77 E-value=1.7e+02 Score=18.61 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=27.8
Q ss_pred eeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCC--ceeEeEEeee
Q psy13888 11 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND--FEFLIFIYSR 66 (70)
Q Consensus 11 y~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNd--ktiKLWkv~e 66 (70)
..+.-.++|| |+..-.=|.. .++.+...+...++++..+ ..++.|.+.+
T Consensus 70 ~~~vG~~HSH-P~~~~~PS~~------D~~~~~~~~~~~lIv~~~~~~~~~~~~~~~~ 120 (128)
T cd08070 70 LEVVGIYHSH-PDGPARPSET------DLRLAWPPGVSYLIVSLAGGAPELRAWRLEG 120 (128)
T ss_pred CeEEEEEeCC-CCCCCCCCHH------HHHhccCCCCeEEEEECCCCCcEEEEEEEcC
Confidence 3777888888 4443322321 1222233355566666665 6899998864
No 130
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=21.67 E-value=65 Score=19.79 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=14.8
Q ss_pred CceEEeeeCCceeEeEEeee
Q psy13888 47 QAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 47 ~~~~LLstNdktiKLWkv~e 66 (70)
.+.|.+.||-+..++|++..
T Consensus 81 ~~~~~i~tNG~~~~~~~~~~ 100 (112)
T PF13588_consen 81 GAPYGILTNGKEFRFYDVDE 100 (112)
T ss_dssp T-SEEEEE-SS-EEEEETTT
T ss_pred CCCEEEEECCCeEEEEEEeC
Confidence 67899999999999998754
No 131
>KOG0640|consensus
Probab=21.40 E-value=1e+02 Score=25.43 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=25.6
Q ss_pred cchhhhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 30 LEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 30 leIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
-.--+-|++++. +.+.+.++-.+-|+-||||.
T Consensus 258 ~qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 258 DQHTGAITQVRY--SSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred cccccceeEEEe--cCCccEEEEeccCCcEEeec
Confidence 345577888885 45667899999999999995
No 132
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=21.22 E-value=27 Score=19.25 Aligned_cols=13 Identities=54% Similarity=0.818 Sum_probs=10.9
Q ss_pred ccccccchhhhhc
Q psy13888 25 DYLKSLEIEEKIN 37 (70)
Q Consensus 25 DYLkSleIeEKIn 37 (70)
||.++|+|.+++-
T Consensus 23 D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 23 DYEKALEIQEELL 35 (38)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999988763
No 133
>PF03989 DNA_gyraseA_C: DNA gyrase C-terminal domain, beta-propeller; InterPro: IPR006691 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. This entry represents the beta-pinwheel repeat found at the C-terminal end of subunit A of topoisomerase IV (ParC) and subunit A of DNA gyrase (GyrA). DNA gyrase is the topoisomerase II found primarily in bacteria and archaea that consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. This is distinct from the topoisomerase II found in most eukaryotes, which consists of a single polypeptide, with the N- and C-terminal regions corresponding to gyrB and gyrA, respectively, and which is not represented in this entry. The ability of DNA gyrase to introduce negative supercoils into DNA is mediated in part by the C-terminal domain of subunit A, which forms a beta-pinwheel fold that is similar to a beta-propeller but with a different blade topology, and which forms a superhelical spiral domain [, ]. This beta-pinwheel is capable of bending DNA by over 180 degrees over a 40 bp region, possibly by wrapping the DNA around the GyrA C-terminal beta-pinwheel domain. In topoisomerase IV, although the C-terminal domain forms a similar superhelical spiral to that of DNA gyrase A, it assembles as a broken form of a beta-pinwheel as distinct from that of gyrA, due to the absence of a DNA gyrase-specific GyrA box motif []. This difference may account for parC being less efficient than gyrA in mediating DNA-bending, leading to their divergence in terms of activity, where topoisomerase IV acts to relax positive supercoils, and DNA gyrase acts to introduce negative supercoils []. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 3L6V_A 3UC1_A 1ZI0_B 1SUU_A 1ZVU_A 1ZVT_B 3NO0_B.
Probab=20.73 E-value=92 Score=16.48 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.2
Q ss_pred eEEeeeCCceeEeEEeeecC
Q psy13888 49 HFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 49 ~~LLstNdktiKLWkv~e~p 68 (70)
.+|+.|+.+.++--.+.+.|
T Consensus 2 ~il~~T~~G~~~r~~~~~i~ 21 (48)
T PF03989_consen 2 EILLITSNGYVKRIPLSEIP 21 (48)
T ss_dssp EEEEEETTSEEEEEEGGGSH
T ss_pred EEEEEeCCCeEEEeeecccc
Confidence 47888899989888887765
No 134
>KOG0642|consensus
Probab=20.56 E-value=41 Score=28.73 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=19.2
Q ss_pred eeEeeeCCCCce-EEeeeCCceeEeEEeee
Q psy13888 38 KIRWLRRKNQAH-FLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 38 ~I~Wl~~~~~~~-~LLstNdktiKLWkv~e 66 (70)
+||=+...+..+ ++..+-|++||||++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk 325 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQK 325 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcc
Confidence 444455566555 55556689999999943
No 135
>KOG0299|consensus
Probab=20.52 E-value=63 Score=27.11 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.0
Q ss_pred CCCCceEEeeeCCceeEeEEeeec
Q psy13888 44 RKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 44 ~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
+.+.+.+.-++-|++||+|.+.+.
T Consensus 253 r~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 253 RKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred ecCccceeeeecCCceEEEehhHh
Confidence 345567778889999999998765
No 136
>KOG2055|consensus
Probab=20.30 E-value=1.2e+02 Score=25.73 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=34.3
Q ss_pred cccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 26 YLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 26 YLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
.+-|+-||-+|..+.|- ..+-++++++-++.|-+|.|.++
T Consensus 337 li~s~KieG~v~~~~fs--Sdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 337 LITSFKIEGVVSDFTFS--SDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred hhheeeeccEEeeEEEe--cCCcEEEEEcCCceEEEEecCCc
Confidence 46788999999999998 34478999999999999999865
Done!