Query psy13888
Match_columns 70
No_of_seqs 92 out of 94
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 22:59:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 99.3 1E-11 3.5E-16 83.4 6.8 61 6-66 66-126 (447)
2 4ggc_A P55CDC, cell division c 96.0 0.01 3.5E-07 37.4 4.4 32 34-67 285-316 (318)
3 3f3f_A Nucleoporin SEH1; struc 95.6 0.025 8.5E-07 35.2 5.0 34 33-66 57-90 (351)
4 4aow_A Guanine nucleotide-bind 94.5 0.04 1.4E-06 35.1 3.7 31 34-66 39-70 (340)
5 4gga_A P55CDC, cell division c 94.2 0.048 1.6E-06 37.3 3.9 32 34-67 365-396 (420)
6 4gq1_A NUP37; propeller, trans 94.2 0.037 1.2E-06 38.1 3.3 34 33-66 136-175 (393)
7 3mmy_A MRNA export factor; mRN 93.8 0.048 1.6E-06 34.7 3.0 36 31-66 125-160 (368)
8 4aow_A Guanine nucleotide-bind 93.7 0.095 3.2E-06 33.3 4.2 32 33-66 306-337 (340)
9 3bg1_A Protein SEC13 homolog; 93.6 0.11 3.6E-06 34.4 4.5 33 34-66 58-90 (316)
10 3gre_A Serine/threonine-protei 93.4 0.068 2.3E-06 36.0 3.4 32 32-63 406-437 (437)
11 3jrp_A Fusion protein of prote 93.3 0.08 2.7E-06 33.9 3.4 33 34-66 56-88 (379)
12 2pm7_B Protein transport prote 93.1 0.078 2.7E-06 34.7 3.2 33 34-66 54-86 (297)
13 3f3f_A Nucleoporin SEH1; struc 93.1 0.13 4.5E-06 31.9 4.1 34 34-67 215-250 (351)
14 2hes_X YDR267CP; beta-propelle 93.0 0.32 1.1E-05 32.3 6.1 33 34-66 198-230 (330)
15 2hes_X YDR267CP; beta-propelle 92.7 0.093 3.2E-06 34.9 3.2 32 35-66 297-328 (330)
16 3fm0_A Protein CIAO1; WDR39,SG 92.7 0.31 1.1E-05 32.6 5.8 31 34-66 106-136 (345)
17 3odt_A Protein DOA1; ubiquitin 92.6 0.2 6.9E-06 31.3 4.5 42 10-66 7-48 (313)
18 4ery_A WD repeat-containing pr 92.5 0.23 7.8E-06 31.9 4.8 44 8-65 10-53 (312)
19 4gqb_B Methylosome protein 50; 92.0 0.16 5.5E-06 34.9 3.8 32 32-66 81-112 (344)
20 1k8k_C P40, ARP2/3 complex 41 92.0 0.4 1.4E-05 30.8 5.4 32 33-66 52-83 (372)
21 3fm0_A Protein CIAO1; WDR39,SG 91.9 0.17 5.7E-06 33.9 3.7 34 33-67 303-336 (345)
22 1sq9_A Antiviral protein SKI8; 91.9 0.27 9.2E-06 32.2 4.6 34 33-66 354-395 (397)
23 3ow8_A WD repeat-containing pr 91.7 0.18 6.1E-06 33.8 3.7 33 33-65 32-66 (321)
24 3bg1_A Protein SEC13 homolog; 91.6 0.2 6.8E-06 33.1 3.8 33 34-66 104-136 (316)
25 1k8k_C P40, ARP2/3 complex 41 91.6 0.23 7.7E-06 32.0 3.9 34 33-66 326-361 (372)
26 2ynn_A Coatomer subunit beta'; 91.6 0.2 6.7E-06 32.8 3.7 32 34-65 185-216 (304)
27 3mmy_A MRNA export factor; mRN 91.4 0.21 7.3E-06 31.7 3.6 34 33-66 39-73 (368)
28 3k26_A Polycomb protein EED; W 91.4 0.17 5.9E-06 32.2 3.1 34 32-65 68-103 (366)
29 4g56_B MGC81050 protein; prote 91.3 0.13 4.4E-06 34.9 2.7 33 31-66 92-124 (357)
30 2pm7_B Protein transport prote 91.2 0.17 5.8E-06 33.0 3.1 33 34-66 100-132 (297)
31 3jrp_A Fusion protein of prote 91.1 0.18 6.1E-06 32.3 3.1 34 34-67 102-135 (379)
32 3iz6_a 40S ribosomal protein R 91.1 0.33 1.1E-05 32.9 4.5 41 11-65 56-96 (380)
33 3i2n_A WD repeat-containing pr 91.0 0.16 5.4E-06 32.4 2.7 34 33-66 111-148 (357)
34 2xzm_R RACK1; ribosome, transl 91.0 0.63 2.1E-05 30.8 5.7 46 9-66 9-58 (343)
35 1yfq_A Cell cycle arrest prote 90.8 0.25 8.6E-06 31.5 3.5 32 33-66 11-42 (342)
36 3k26_A Polycomb protein EED; W 90.7 0.26 9E-06 31.3 3.5 33 33-65 18-52 (366)
37 3zwl_B Eukaryotic translation 90.6 0.3 1E-05 31.0 3.8 32 33-66 315-346 (369)
38 1pgu_A Actin interacting prote 90.4 0.23 7.9E-06 34.3 3.3 30 33-65 584-613 (615)
39 2j04_A TAU60, YPL007P, hypothe 90.3 0.13 4.6E-06 41.0 2.3 41 22-66 166-211 (588)
40 1got_B GT-beta; complex (GTP-b 90.2 0.7 2.4E-05 30.7 5.4 42 10-65 44-85 (340)
41 3dw8_B Serine/threonine-protei 90.1 0.8 2.7E-05 30.4 5.6 52 7-66 8-59 (447)
42 3ei3_B DNA damage-binding prot 90.1 0.52 1.8E-05 31.1 4.7 31 34-65 74-104 (383)
43 2pbi_B Guanine nucleotide-bind 89.9 0.61 2.1E-05 31.5 5.0 31 35-65 198-228 (354)
44 3i2n_A WD repeat-containing pr 89.9 0.46 1.6E-05 30.2 4.2 37 30-66 206-243 (357)
45 4ery_A WD repeat-containing pr 89.7 0.64 2.2E-05 29.8 4.8 30 34-65 66-95 (312)
46 2xyi_A Probable histone-bindin 89.7 0.17 5.8E-06 34.9 2.2 47 19-66 114-160 (430)
47 3jro_A Fusion protein of prote 89.5 0.77 2.6E-05 34.8 5.8 33 34-66 54-86 (753)
48 4e54_B DNA damage-binding prot 89.5 0.22 7.6E-06 34.3 2.6 32 33-65 119-150 (435)
49 4ggc_A P55CDC, cell division c 89.4 0.35 1.2E-05 30.3 3.3 29 35-65 69-97 (318)
50 3v7d_B Cell division control p 89.2 0.4 1.4E-05 32.5 3.7 34 33-66 203-236 (464)
51 3gre_A Serine/threonine-protei 89.2 0.43 1.5E-05 32.1 3.8 32 32-65 110-141 (437)
52 3ei3_B DNA damage-binding prot 88.8 0.33 1.1E-05 32.0 3.0 31 33-66 352-382 (383)
53 3dwl_C Actin-related protein 2 88.8 0.29 9.9E-06 32.0 2.7 31 34-64 345-377 (377)
54 4gga_A P55CDC, cell division c 88.7 0.35 1.2E-05 33.0 3.2 29 35-65 149-177 (420)
55 2pm9_A Protein WEB1, protein t 88.6 0.3 1E-05 32.0 2.7 39 26-66 60-98 (416)
56 2ynn_A Coatomer subunit beta'; 88.5 0.64 2.2E-05 30.4 4.2 41 11-65 3-43 (304)
57 3iz6_a 40S ribosomal protein R 88.5 0.38 1.3E-05 32.6 3.2 30 34-65 250-279 (380)
58 1sq9_A Antiviral protein SKI8; 88.5 0.43 1.5E-05 31.2 3.3 30 34-67 17-46 (397)
59 2j04_B YDR362CP, TAU91; beta p 88.4 0.42 1.4E-05 35.6 3.7 32 35-66 209-244 (524)
60 3odt_A Protein DOA1; ubiquitin 88.3 0.38 1.3E-05 30.0 2.9 29 35-66 268-296 (313)
61 1yfq_A Cell cycle arrest prote 88.2 0.37 1.3E-05 30.7 2.8 32 32-66 100-131 (342)
62 3vu4_A KMHSV2; beta-propeller 87.7 0.63 2.2E-05 31.4 3.9 32 34-67 241-272 (355)
63 4e54_B DNA damage-binding prot 87.5 0.52 1.8E-05 32.4 3.4 32 33-65 164-195 (435)
64 3zwl_B Eukaryotic translation 87.5 0.56 1.9E-05 29.7 3.3 31 33-65 74-104 (369)
65 3frx_A Guanine nucleotide-bind 87.5 0.88 3E-05 30.0 4.4 44 10-66 6-49 (319)
66 4h5i_A Guanine nucleotide-exch 87.2 0.69 2.4E-05 31.5 3.9 31 34-66 313-343 (365)
67 1nr0_A Actin interacting prote 87.2 0.45 1.5E-05 34.7 3.1 28 34-64 582-609 (611)
68 1erj_A Transcriptional repress 87.2 0.89 3E-05 30.9 4.4 33 35-67 354-390 (393)
69 1pgu_A Actin interacting prote 87.1 0.87 3E-05 31.4 4.3 33 33-65 63-96 (615)
70 1erj_A Transcriptional repress 86.8 1.1 3.8E-05 30.4 4.8 30 34-65 166-195 (393)
71 2aq5_A Coronin-1A; WD40 repeat 86.6 0.63 2.1E-05 31.2 3.4 33 33-66 81-113 (402)
72 3lrv_A PRE-mRNA-splicing facto 86.1 0.55 1.9E-05 31.0 2.8 33 34-66 126-158 (343)
73 4a11_B DNA excision repair pro 85.9 0.75 2.6E-05 29.7 3.3 33 33-66 43-75 (408)
74 3dwl_C Actin-related protein 2 85.9 0.88 3E-05 29.7 3.7 31 33-65 146-176 (377)
75 3frx_A Guanine nucleotide-bind 85.8 1.2 3.9E-05 29.4 4.3 32 33-66 286-317 (319)
76 1got_B GT-beta; complex (GTP-b 85.5 0.71 2.4E-05 30.6 3.2 30 34-65 227-256 (340)
77 2vdu_B TRNA (guanine-N(7)-)-me 85.4 1 3.5E-05 31.0 4.0 33 34-66 196-229 (450)
78 2oit_A Nucleoporin 214KDA; NH2 85.4 0.93 3.2E-05 32.3 3.9 33 33-66 149-181 (434)
79 1p22_A F-BOX/WD-repeat protein 85.3 0.61 2.1E-05 31.8 2.8 31 34-68 386-416 (435)
80 3ow8_A WD repeat-containing pr 84.9 0.77 2.7E-05 30.6 3.2 29 35-65 250-278 (321)
81 1r5m_A SIR4-interacting protei 84.8 0.8 2.7E-05 29.6 3.1 29 35-65 396-424 (425)
82 1vyh_C Platelet-activating fac 84.6 0.88 3E-05 31.3 3.4 30 34-65 193-222 (410)
83 4aez_A CDC20, WD repeat-contai 84.4 0.72 2.5E-05 31.1 2.9 31 34-66 218-248 (401)
84 2pbi_B Guanine nucleotide-bind 84.4 0.73 2.5E-05 31.1 2.9 30 34-65 241-270 (354)
85 1r5m_A SIR4-interacting protei 84.2 1.2 4.1E-05 28.8 3.7 31 33-64 45-75 (425)
86 3dm0_A Maltose-binding peripla 84.1 0.79 2.7E-05 33.6 3.2 32 35-66 519-550 (694)
87 1gxr_A ESG1, transducin-like e 84.1 1.2 4.2E-05 27.9 3.6 32 32-65 305-336 (337)
88 3vl1_A 26S proteasome regulato 84.0 0.98 3.3E-05 29.8 3.3 32 33-66 139-170 (420)
89 1gxr_A ESG1, transducin-like e 83.8 1.2 4.2E-05 27.8 3.6 34 31-66 95-128 (337)
90 2xzm_R RACK1; ribosome, transl 83.7 1 3.5E-05 29.8 3.3 30 34-65 119-148 (343)
91 3v7d_B Cell division control p 83.2 0.99 3.4E-05 30.6 3.1 29 34-65 163-191 (464)
92 4h5i_A Guanine nucleotide-exch 83.1 1.2 4E-05 30.4 3.5 29 35-65 271-299 (365)
93 4aez_A CDC20, WD repeat-contai 83.0 1 3.5E-05 30.3 3.2 31 33-65 134-164 (401)
94 4gqb_B Methylosome protein 50; 82.5 1.2 4.2E-05 30.4 3.5 33 34-68 300-333 (344)
95 2aq5_A Coronin-1A; WD40 repeat 82.2 1.2 4E-05 29.9 3.1 31 33-65 176-206 (402)
96 4a11_B DNA excision repair pro 81.9 1.7 5.8E-05 28.0 3.8 31 34-66 335-365 (408)
97 2pm9_A Protein WEB1, protein t 81.9 1.6 5.4E-05 28.6 3.6 33 34-67 306-338 (416)
98 1vyh_C Platelet-activating fac 81.8 1.3 4.6E-05 30.4 3.4 31 35-65 278-326 (410)
99 3vl1_A 26S proteasome regulato 81.6 1.4 4.8E-05 29.1 3.3 31 33-65 181-211 (420)
100 3vu4_A KMHSV2; beta-propeller 81.4 1.2 4.2E-05 30.0 3.1 30 34-65 196-226 (355)
101 3jro_A Fusion protein of prote 79.7 1.3 4.4E-05 33.6 3.0 34 34-67 100-133 (753)
102 1nr0_A Actin interacting prote 79.3 1.5 5.2E-05 31.9 3.2 32 32-65 238-269 (611)
103 4g56_B MGC81050 protein; prote 78.9 1.8 6.1E-05 29.3 3.2 33 33-66 311-343 (357)
104 2xyi_A Probable histone-bindin 78.5 2.2 7.4E-05 29.3 3.6 32 34-66 379-410 (430)
105 3dm0_A Maltose-binding peripla 78.4 2.3 7.9E-05 31.2 3.9 29 36-66 665-693 (694)
106 3lrv_A PRE-mRNA-splicing facto 78.1 1.9 6.7E-05 28.3 3.2 30 35-66 172-201 (343)
107 2oaj_A Protein SNI1; WD40 repe 77.9 1.5 5.1E-05 34.6 3.0 32 33-64 622-659 (902)
108 2ymu_A WD-40 repeat protein; u 77.5 4 0.00014 28.2 4.7 29 35-65 59-87 (577)
109 2vdu_B TRNA (guanine-N(7)-)-me 77.1 2.3 8E-05 29.2 3.4 29 34-65 242-270 (450)
110 2j04_B YDR362CP, TAU91; beta p 76.8 2.2 7.4E-05 31.8 3.4 33 34-66 484-517 (524)
111 3mkq_A Coatomer beta'-subunit; 76.4 2.7 9.2E-05 30.5 3.7 32 34-65 185-216 (814)
112 2ymu_A WD-40 repeat protein; u 76.4 4.5 0.00016 27.9 4.7 29 34-64 509-537 (577)
113 1p22_A F-BOX/WD-repeat protein 75.3 2.4 8.4E-05 28.8 3.1 28 34-65 174-201 (435)
114 2ovr_B FBW7, F-BOX/WD repeat p 74.4 6.5 0.00022 26.6 5.0 27 35-65 281-307 (445)
115 2oit_A Nucleoporin 214KDA; NH2 73.4 2 6.9E-05 30.6 2.4 31 33-65 192-222 (434)
116 2w18_A PALB2, fancn, partner a 73.3 2.6 9E-05 31.6 3.1 26 38-65 331-356 (356)
117 2ovr_B FBW7, F-BOX/WD repeat p 71.3 4.1 0.00014 27.6 3.5 28 34-65 363-390 (445)
118 2oaj_A Protein SNI1; WD40 repe 70.0 3.7 0.00013 32.4 3.4 30 33-65 58-87 (902)
119 3sfz_A APAF-1, apoptotic pepti 69.3 4.1 0.00014 31.5 3.4 32 34-65 700-731 (1249)
120 2j04_A TAU60, YPL007P, hypothe 66.4 4.8 0.00016 32.2 3.4 30 36-67 132-161 (588)
121 1xip_A Nucleoporin NUP159; bet 66.2 3 0.0001 30.8 2.1 27 36-66 129-155 (388)
122 3mkq_A Coatomer beta'-subunit; 60.6 7 0.00024 28.3 3.1 30 34-65 56-85 (814)
123 3sfz_A APAF-1, apoptotic pepti 56.9 9.8 0.00034 29.5 3.5 30 34-65 744-773 (1249)
124 2w18_A PALB2, fancn, partner a 56.6 8.9 0.0003 28.7 3.2 51 9-67 23-73 (356)
125 3bws_A Protein LP49; two-domai 55.0 6.3 0.00022 26.1 1.9 38 26-65 115-152 (433)
126 4gq1_A NUP37; propeller, trans 53.7 11 0.00038 25.6 3.1 38 30-67 12-50 (393)
127 4a5s_A Dipeptidyl peptidase 4 52.6 11 0.00037 28.2 3.0 28 34-65 17-44 (740)
128 3bws_A Protein LP49; two-domai 51.6 8.8 0.0003 25.4 2.2 29 35-65 171-199 (433)
129 1l0q_A Surface layer protein; 49.9 13 0.00043 24.3 2.7 34 30-65 28-62 (391)
130 1pby_B Quinohemoprotein amine 47.0 17 0.00059 22.6 2.9 36 28-65 274-309 (337)
131 1xfd_A DIP, dipeptidyl aminope 45.5 4.3 0.00015 29.3 -0.1 33 30-65 13-45 (723)
132 2ojh_A Uncharacterized protein 43.7 22 0.00075 21.3 2.9 31 33-66 41-71 (297)
133 1ri6_A Putative isomerase YBHE 42.9 35 0.0012 21.2 3.9 40 24-65 28-68 (343)
134 1z68_A Fibroblast activation p 39.1 21 0.00073 25.9 2.8 25 38-65 20-44 (719)
135 1jmx_B Amine dehydrogenase; ox 37.9 30 0.001 21.7 3.0 36 28-65 289-324 (349)
136 2ehw_A Hypothetical protein TT 37.3 6.9 0.00024 26.3 -0.0 15 21-35 71-85 (120)
137 2jo8_A Serine/threonine-protei 33.8 14 0.00048 21.4 0.9 12 23-34 3-14 (51)
138 3pbp_A Nucleoporin NUP82; beta 29.3 30 0.001 27.1 2.4 34 33-66 124-158 (452)
139 1q7f_A NHL, brain tumor CG1071 27.1 76 0.0026 19.8 3.6 27 37-66 254-280 (286)
140 2z3z_A Dipeptidyl aminopeptida 25.8 48 0.0016 23.9 2.7 26 34-65 26-51 (706)
141 3j20_A 30S ribosomal protein S 24.7 23 0.00077 24.9 0.8 19 12-30 77-95 (198)
142 2ecf_A Dipeptidyl peptidase IV 20.4 74 0.0025 23.0 2.8 28 36-65 339-366 (741)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=83.40 Aligned_cols=61 Identities=75% Similarity=1.112 Sum_probs=56.6
Q ss_pred CCcceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 6 PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 6 ~~~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...++|+...+|++|.+||||+++++++..|+.|.|.+..+...++.++.|++|+||.+..
T Consensus 66 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~ 126 (447)
T 3dw8_B 66 HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISE 126 (447)
T ss_dssp CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEE
T ss_pred ccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEeccc
Confidence 3457899999999999999999999999999999999998778999999999999999975
No 2
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=95.98 E-value=0.01 Score=37.45 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=24.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|++|.|-+.+ ..++-++.|++|+||++.+.
T Consensus 285 ~~V~~l~~spdg--~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 285 SRVLSLTMSPDG--ATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SCEEEEEECTTS--SCEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEEcCCC--CEEEEEecCCeEEEEECCCC
Confidence 468999997643 35555679999999999875
No 3
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.62 E-value=0.025 Score=35.23 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=28.2
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|.+|.|.+..+...++.++.|++|++|.+..
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 3468999999876567888889999999999864
No 4
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.50 E-value=0.04 Score=35.09 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=22.9
Q ss_pred hhhceeEeeeCCCCceEEe-eeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLL-STNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LL-stNdktiKLWkv~e 66 (70)
.-|++|.|.|..+ .+|+ ++.|++|+||.+..
T Consensus 39 ~~V~~v~~sp~~~--~~l~S~s~D~~i~vWd~~~ 70 (340)
T 4aow_A 39 GWVTQIATTPQFP--DMILSASRDKTIIMWKLTR 70 (340)
T ss_dssp SCEEEEEECTTCT--TEEEEEETTSCEEEEEECC
T ss_pred CCEEEEEEeCCCC--CEEEEEcCCCeEEEEECCC
Confidence 3489999976533 3555 56899999999864
No 5
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.25 E-value=0.048 Score=37.32 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=24.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|+.|.|-+.+ ..++-++.|++|+||+|.+.
T Consensus 365 ~~V~~l~~spdg--~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 365 SRVLSLTMSPDG--ATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp SCEEEEEECTTS--SCEEEEETTTEEEEECCSCS
T ss_pred CCEEEEEEcCCC--CEEEEEecCCeEEEEECCCC
Confidence 358899987643 35566679999999999764
No 6
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=94.22 E-value=0.037 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=25.0
Q ss_pred hhhhceeEeeeCCC-----CceEEee-eCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKN-----QAHFLLS-TNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~-----~~~~LLs-tNdktiKLWkv~e 66 (70)
...|+.|.|.+... ..++|+| +.|+||+||.+..
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 35799999987432 2356665 5999999999864
No 7
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.78 E-value=0.048 Score=34.69 Aligned_cols=36 Identities=11% Similarity=0.281 Sum_probs=30.6
Q ss_pred chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.-...|+.|.|++..+...++.++.|++|++|.+..
T Consensus 125 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 160 (368)
T 3mmy_A 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160 (368)
T ss_dssp ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence 445679999999888888888889999999998754
No 8
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.66 E-value=0.095 Score=33.31 Aligned_cols=32 Identities=6% Similarity=0.140 Sum_probs=23.8
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+++.|-+. ...++-++.|++|+||++.-
T Consensus 306 ~~~v~~l~~s~d--g~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 306 PPQCTSLAWSAD--GQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp CCCEEEEEECTT--SSEEEEEETTSCEEEEEEEC
T ss_pred CCCEEEEEECCC--CCEEEEEeCCCEEEEEeCCC
Confidence 346888888654 34555567999999999874
No 9
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=93.60 E-value=0.11 Score=34.44 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=25.8
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|+.|.|.+..+...++-++.|++|+||.+..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 358899998765556777778999999998753
No 10
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.068 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.090 Sum_probs=26.7
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEE
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFI 63 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWk 63 (70)
-...|+.|.|.+..+...++-+.+|++|+||+
T Consensus 406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 35679999999997767777788999999995
No 11
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.08 Score=33.92 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.0
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|..|.|.+..+...++.++.|++|++|.+..
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 468999999877677888889999999999864
No 12
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.10 E-value=0.078 Score=34.66 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=25.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|++|.|.+......++-++.|++|+||.+..
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 458899998765455677778899999999853
No 13
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.08 E-value=0.13 Score=31.89 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=27.3
Q ss_pred hhhceeEeeeCCCC--ceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQ--AHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~--~~~LLstNdktiKLWkv~e~ 67 (70)
..|+.|.|.+.++. ..++.++.|++|++|.+...
T Consensus 215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 46899999887643 56777788999999999863
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.98 E-value=0.32 Score=32.28 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=25.8
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|..+.|-+..+...++-++.|++|+||++..
T Consensus 198 ~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 357888888776555666778999999999864
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.093 Score=34.93 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=21.0
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.|+.+.|.+..+...++-++.|++|+||.+..
T Consensus 297 ~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 297 EINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 58899998864445566668999999999865
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=92.70 E-value=0.31 Score=32.58 Aligned_cols=31 Identities=6% Similarity=0.254 Sum_probs=24.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|+.|.|.+. ...++-++.|++|++|.+..
T Consensus 106 ~~v~~v~~sp~--~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 106 NEVKSVAWAPS--GNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SCEEEEEECTT--SSEEEEEETTSCEEEEEECT
T ss_pred CCceEEEEeCC--CCEEEEEECCCeEEEEECCC
Confidence 45899999774 34677778999999999854
No 17
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.2 Score=31.25 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=32.1
Q ss_pred eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.++...+|+.|. ..|++|.| + +...++.++.|++|++|.+..
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~ 48 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDD 48 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESS
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCC
Confidence 456677777775 46899999 4 345688889999999999853
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=92.51 E-value=0.23 Score=31.95 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=33.5
Q ss_pred cceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 8 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 8 ~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.+.+.....++.|. ..|++|.|-+. ...++.++.|++|+||.+.
T Consensus 10 ~~~~~~~~~~~gh~------------~~v~~~~~s~~--~~~l~s~~~dg~i~iw~~~ 53 (312)
T 4ery_A 10 KPNYALKFTLAGHT------------KAVSSVKFSPN--GEWLASSSADKLIKIWGAY 53 (312)
T ss_dssp CCCCEEEEEECCCS------------SCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred CCCceeEEEEcccC------------CcEEEEEECCC--CCEEEEeeCCCeEEEEeCC
Confidence 34567777788886 46899999764 4467777899999999864
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=92.00 E-value=0.16 Score=34.86 Aligned_cols=32 Identities=9% Similarity=0.314 Sum_probs=26.2
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
-+.-|+.+.|.+. ..++.++.|++|+||.+..
T Consensus 81 ~~~~v~~~~~s~d---~~l~~~s~dg~v~lWd~~~ 112 (344)
T 4gqb_B 81 TEAGVADLTWVGE---RGILVASDSGAVELWELDE 112 (344)
T ss_dssp ESSCEEEEEEETT---TEEEEEETTSEEEEEEECT
T ss_pred cCCCEEEEEEeCC---CeEEEEECCCEEEEEeccC
Confidence 3456999999875 4688999999999999864
No 20
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=91.99 E-value=0.4 Score=30.80 Aligned_cols=32 Identities=6% Similarity=0.293 Sum_probs=25.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+.|.|.+ +...++.++.|++|++|.+..
T Consensus 52 ~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 52 NGQVTGVDWAP--DSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp SSCEEEEEEET--TTTEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEeC--CCCEEEEEcCCCeEEEEECCC
Confidence 35699999987 345777888999999999853
No 21
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=91.93 E-value=0.17 Score=33.89 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=24.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
...|++|.|.+... ..+.-++.|++|+||++...
T Consensus 303 ~~~V~~v~~~p~~~-~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 303 SQDVNCVAWNPKEP-GLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp SSCEEEEEECSSST-TEEEEEETTSCEEEEEECC-
T ss_pred cCcEeEeEEeCCCc-eEEEEcCCCCcEEEEEecCC
Confidence 35699999987532 24555668999999998753
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=91.87 E-value=0.27 Score=32.16 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=27.2
Q ss_pred hhhhceeEeeeCCC--------CceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKN--------QAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~--------~~~~LLstNdktiKLWkv~e 66 (70)
...|+.+.|.+.+. ...++.++.|++|++|++..
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 56799999998762 25677778899999999863
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=91.72 E-value=0.18 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=23.2
Q ss_pred hhhhceeEeeeCC--CCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRK--NQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~--~~~~~LLstNdktiKLWkv~ 65 (70)
...|.+|.|.+.. +...++-++.|++||||.+.
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~ 66 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR 66 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC
Confidence 3578999998763 45566667899999999975
No 24
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.61 E-value=0.2 Score=33.10 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=26.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|++|.|.+......++-++.|++|+||.+..
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~ 136 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence 358899998876566777788999999998864
No 25
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=91.59 E-value=0.23 Score=31.96 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=25.9
Q ss_pred hhhhceeEeeeCCC--CceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKN--QAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~--~~~~LLstNdktiKLWkv~e 66 (70)
...|++|.|.+..+ ...++-++.|++|++|++..
T Consensus 326 ~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 326 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 45789999986643 35666677899999999853
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=91.56 E-value=0.2 Score=32.85 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=26.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.+.|.+..+...++-++.|++|+||.+.
T Consensus 185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (304)
T ss_dssp TCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence 45778888887777778888899999999874
No 27
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.41 E-value=0.21 Score=31.68 Aligned_cols=34 Identities=3% Similarity=0.050 Sum_probs=27.2
Q ss_pred hhhhceeEeeeCC-CCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~e 66 (70)
...|++|.|.+.. +...++.++.|++|+||.+..
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~ 73 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD 73 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC
Confidence 4679999999875 235677778899999999864
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=91.35 E-value=0.17 Score=32.20 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=28.2
Q ss_pred hhhhhceeEeeeCCC--CceEEeeeCCceeEeEEee
Q psy13888 32 IEEKINKIRWLRRKN--QAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~--~~~~LLstNdktiKLWkv~ 65 (70)
..+.|..+.|.+..+ ...++.++.|++|++|.+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 103 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI 103 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch
Confidence 457899999999865 4677778899999999865
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.30 E-value=0.13 Score=34.95 Aligned_cols=33 Identities=9% Similarity=0.306 Sum_probs=23.8
Q ss_pred chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
+-+..|+.|.|.+. ..+|.++.|++|+||.+..
T Consensus 92 ~~~~~V~~~~~s~d---~~~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 92 QTEAGVTDVAWVSE---KGILVASDSGAVELWEILE 124 (357)
T ss_dssp ECSSCEEEEEEETT---TEEEEEETTSCEEEC----
T ss_pred CCCCCEEEEEEcCC---CCEEEEECCCEEEEeeccc
Confidence 34456899999875 3688999999999998864
No 30
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=91.19 E-value=0.17 Score=33.04 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=26.9
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|+++.|.+......++.++.|++|+||.+..
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~ 132 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE 132 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence 358889998875556788889999999999864
No 31
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.18 Score=32.30 Aligned_cols=34 Identities=12% Similarity=0.341 Sum_probs=28.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|..+.|.+..+...++.++.|++|++|.+...
T Consensus 102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 135 (379)
T 3jrp_A 102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence 4688999988765678999999999999998654
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.06 E-value=0.33 Score=32.92 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=30.0
Q ss_pred eeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 11 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 11 y~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
......|+.|. ..|+++.|-+.+ ..++-++.|++|+||.+.
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~sp~~--~~l~s~s~D~~v~iWd~~ 96 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDWTPEK--NWIVSASQDGRLIVWNAL 96 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEECTTS--SCEEEEETTSEEEEEETT
T ss_pred eEEeecccccc------------cEEEEEEEcCCC--CEEEEEeCCCeEEEEECC
Confidence 34455666664 469999998743 467777899999999863
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.04 E-value=0.16 Score=32.39 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=26.7
Q ss_pred hhhhceeEeee----CCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLR----RKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~----~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+.|.|++ ..+...++.++.|++|++|.+..
T Consensus 111 ~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~ 148 (357)
T 3i2n_A 111 KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ 148 (357)
T ss_dssp SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS
T ss_pred ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC
Confidence 45689999987 35666788888999999998764
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=90.97 E-value=0.63 Score=30.83 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=31.6
Q ss_pred ceeeEEEeeeccCcccccccccchhhhhceeEeeeC---C-CCceEEeeeCCceeEeEEeee
Q psy13888 9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR---K-NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~---~-~~~~~LLstNdktiKLWkv~e 66 (70)
..+.....|+.|.- .|++|.|... . +...++-++.|++|+||.+..
T Consensus 9 ~~~~~~~~l~gH~~------------~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~ 58 (343)
T 2xzm_R 9 IQVVKRGILEGHSD------------WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE 58 (343)
T ss_dssp EEEEEEEEEECCSS------------CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECS
T ss_pred eEeeeeeeeccchh------------hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCc
Confidence 35566778888863 4888888422 2 344555667899999999863
No 35
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=90.75 E-value=0.25 Score=31.47 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=26.1
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|.+|.|.+. ...++.++.|++|+||.+..
T Consensus 11 ~~~v~~~~~s~~--~~~l~~~~~d~~v~iw~~~~ 42 (342)
T 1yfq_A 11 KDYISDIKIIPS--KSLLLITSWDGSLTVYKFDI 42 (342)
T ss_dssp SSCEEEEEEEGG--GTEEEEEETTSEEEEEEEET
T ss_pred CCcEEEEEEcCC--CCEEEEEcCCCeEEEEEeCC
Confidence 356999999984 45777888999999999864
No 36
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.71 E-value=0.26 Score=31.34 Aligned_cols=33 Identities=0% Similarity=0.099 Sum_probs=27.3
Q ss_pred hhhhceeEeeeC--CCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRR--KNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~--~~~~~~LLstNdktiKLWkv~ 65 (70)
...|++|.|.+. .+...++.++.|++|+||.+.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~ 52 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH 52 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcC
Confidence 468999999985 355678888889999999986
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=90.62 E-value=0.3 Score=30.96 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=24.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+.+.|.+.+ ..++.++.|++|++|.+..
T Consensus 315 ~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 315 FGPLNTVAISPQG--TSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSEEEEEEECH
T ss_pred cCcEEEEEECCCC--CEEEEEcCCCeEEEEECcc
Confidence 3458889998743 4666777899999999864
No 38
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=90.45 E-value=0.23 Score=34.26 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=25.6
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|+++.|.+.+. ++.++.|++|++|++.
T Consensus 584 ~~~v~~l~~s~~~~---l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 584 KDGVNNLLWETPST---LVSSGADACIKRWNVV 613 (615)
T ss_dssp TTCEEEEEEEETTE---EEEEETTSCEEEEEEC
T ss_pred ccceEEEEEcCCCC---eEEecCCceEEEEeee
Confidence 45799999998765 7888899999999985
No 39
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=90.29 E-value=0.13 Score=41.03 Aligned_cols=41 Identities=17% Similarity=0.404 Sum_probs=30.4
Q ss_pred cccccccccch-----hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 22 PEFDYLKSLEI-----EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 22 ~EFDYLkSleI-----eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
|+|-.++.+.. ...|.+|.|-+.+ ++.++.|++|+||.+..
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCS
T ss_pred ccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCC
Confidence 44455555421 3489999999755 88999999999999854
No 40
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=90.24 E-value=0.7 Score=30.68 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=30.4
Q ss_pred eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..+...+++.|. ..|..+.|-+. ...++-++.|++|++|.+.
T Consensus 44 ~~~~~~~l~gH~------------~~v~~~~~s~d--~~~l~s~s~Dg~v~iWd~~ 85 (340)
T 1got_B 44 QMRTRRTLRGHL------------AKIYAMHWGTD--SRLLLSASQDGKLIIWDSY 85 (340)
T ss_dssp CCCEEEEECCCS------------SCEEEEEECTT--SSEEEEEETTTEEEEEETT
T ss_pred cchhheeecCCC------------CceEEEEECCC--CCEEEEEeCCCcEEEEECC
Confidence 344555666664 47899999653 4567778899999999853
No 41
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=90.07 E-value=0.8 Score=30.40 Aligned_cols=52 Identities=6% Similarity=0.081 Sum_probs=35.7
Q ss_pred CcceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 7 KRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 7 ~~~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...+++|...|-...++ +.-+..|.++.|-+ +...++..+.|++|+||.+..
T Consensus 8 ~~~~w~~~q~~~~~~~~------~~~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~ 59 (447)
T 3dw8_B 8 NDIQWCFSQVKGAVDDD------VAEADIISTVEFNH--SGELLATGDKGGRVVIFQQEQ 59 (447)
T ss_dssp CCCCCEEEECCSCSSSC------CCGGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC
T ss_pred cceeEEEEEeccccccc------ccccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecC
Confidence 34466776555443222 34467899999987 445677778999999999864
No 42
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=90.06 E-value=0.52 Score=31.08 Aligned_cols=31 Identities=6% Similarity=0.398 Sum_probs=25.4
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|++|.|.+.++ ..++.++.|++|+||.+.
T Consensus 74 ~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~ 104 (383)
T 3ei3_B 74 RRVTSLEWHPTHP-TTVAVGSKGGDIILWDYD 104 (383)
T ss_dssp SCEEEEEECSSCT-TEEEEEEBTSCEEEEETT
T ss_pred CCEEEEEECCCCC-CEEEEEcCCCeEEEEeCC
Confidence 6789999988642 577778889999999876
No 43
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=89.87 E-value=0.61 Score=31.46 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=25.9
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|..+.|.+..+.+.++-++.|++|++|.+.
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 4778888887777788888999999999864
No 44
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=89.86 E-value=0.46 Score=30.19 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=29.4
Q ss_pred cchhhhhceeEeeeCC-CCceEEeeeCCceeEeEEeee
Q psy13888 30 LEIEEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 30 leIeEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~e 66 (70)
......|+.+.|.+.. +...++.++.|++|++|.+..
T Consensus 206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 3445678999998854 456788889999999999865
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=89.72 E-value=0.64 Score=29.83 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=23.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.|.|.+. ...++.++.|++|++|.+.
T Consensus 66 ~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 66 LGISDVAWSSD--SNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp SCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred CceEEEEEcCC--CCEEEEECCCCEEEEEECC
Confidence 35889999774 3567778899999999874
No 46
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.70 E-value=0.17 Score=34.91 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=33.2
Q ss_pred ccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 19 SHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 19 SHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.-.|.|...+...-..-|++|+|.+. +...+...+.|++|++|.+..
T Consensus 114 ~~~~~~~~~~~~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~ 160 (430)
T 2xyi_A 114 SVCGKIEIEIKINHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTK 160 (430)
T ss_dssp ----CEEEEEEEEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGG
T ss_pred CCCCceEEEEEEcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCC
Confidence 44556666777777788999999985 234566667899999999875
No 47
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=89.52 E-value=0.77 Score=34.77 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.8
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|..|.|.+..+...++.++.|++|++|.+..
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 468999999887778899999999999999864
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=89.50 E-value=0.22 Score=34.26 Aligned_cols=32 Identities=3% Similarity=0.357 Sum_probs=24.3
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+.+|++|.|-|.. .+.+...+.|++|+||.+.
T Consensus 119 ~~~V~~l~~~P~~-~~~lasGs~dg~i~lWd~~ 150 (435)
T 4e54_B 119 DRRATSLAWHPTH-PSTVAVGSKGGDIMLWNFG 150 (435)
T ss_dssp SSCEEEEEECSSC-TTCEEEEETTSCEEEECSS
T ss_pred CCCEEEEEEeCCC-CCEEEEEeCCCEEEEEECC
Confidence 4579999997643 3455566799999999875
No 49
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=89.38 E-value=0.35 Score=30.34 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=22.7
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-|++|.|.+.+ ..++-.+.|++|+||.+.
T Consensus 69 ~V~~v~~~~~~--~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 69 YISSVAWIKEG--NYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp CEEEEEECTTS--SEEEEEETTSEEEEEETT
T ss_pred eEEEEEECCCC--CEEEEEECCCcEEEeecC
Confidence 47888887654 467777899999999864
No 50
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.21 E-value=0.4 Score=32.51 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=29.2
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|..+.|.+..+...++.++.|++|++|.+..
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~ 236 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence 3468889999888888899999999999999864
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.43 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=26.4
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-...|.+|.|.+ +...++.++.|++|+||.+.
T Consensus 110 h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 110 CSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTSEEEEEEEE
T ss_pred CCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEec
Confidence 356799999986 45578888999999999985
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=88.80 E-value=0.33 Score=32.03 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=22.2
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..-++.+.|-+.+ .+|+++.|++|+||++..
T Consensus 352 ~~~~~~~~~s~~g---~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 352 AGIISLNKFSPTG---DVLASGMGFNILIWNRED 382 (383)
T ss_dssp CSCCCEEEECTTS---SEEEEEETTEEEEEECC-
T ss_pred CceEEEEEEecCc---cEEEEecCCcEEEEecCC
Confidence 3456666776543 477787899999999864
No 53
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=88.77 E-value=0.29 Score=31.98 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=22.5
Q ss_pred hhhceeEeeeCCCCc--eEEeeeCCceeEeEEe
Q psy13888 34 EKINKIRWLRRKNQA--HFLLSTNDFEFLIFIY 64 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~--~~LLstNdktiKLWkv 64 (70)
.-|++|.|++..+.. .++=++.|++|+||++
T Consensus 345 ~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 345 NMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 458889988765432 3555668999999975
No 54
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=88.72 E-value=0.35 Score=32.99 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=23.9
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-|++|.|.+. ...++..+.|++|+||.+.
T Consensus 149 ~V~sv~fspd--g~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 149 YISSVAWIKE--GNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp CEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred cEEEEEECCC--CCEEEEEECCCeEEEEEcC
Confidence 4899999774 4577788999999999874
No 55
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=88.57 E-value=0.3 Score=31.99 Aligned_cols=39 Identities=15% Similarity=0.327 Sum_probs=29.3
Q ss_pred cccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 26 YLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 26 YLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.+..+.-...|+.|.|-+ +...++.++.|++|+||.+..
T Consensus 60 ~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~v~vw~~~~ 98 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSH--NNKIIAGALDNGSLELYSTNE 98 (416)
T ss_dssp CSCCCCCSSCEEEEEECS--SSSCEEEEESSSCEEEECCSS
T ss_pred EEEEEecCCceEEEEECC--CCCeEEEEccCCeEEEeeccc
Confidence 344555678899999955 344666677999999999865
No 56
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=88.55 E-value=0.64 Score=30.36 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=29.6
Q ss_pred eeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 11 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 11 y~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
++....|+.|. ..|+.|.|-+.+ ..++-++.|++|+||.+.
T Consensus 3 l~~~~~~~~h~------------~~V~~~~fsp~~--~~l~s~~~dg~v~lWd~~ 43 (304)
T 2ynn_A 3 LDIKKTFSNRS------------DRVKGIDFHPTE--PWVLTTLYSGRVELWNYE 43 (304)
T ss_dssp CCCEEEEEEEC------------SCEEEEEECSSS--SEEEEEETTSEEEEEETT
T ss_pred ceeEEeecCCC------------CceEEEEECCCC--CEEEEEcCCCcEEEEECC
Confidence 34455666665 358899987653 467777899999999874
No 57
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.50 E-value=0.38 Score=32.57 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=24.0
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|++|.|.+.+ ..++-++.|++|+||.+.
T Consensus 250 ~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 250 GDINSVKFFPDG--QRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp SCCCEEEECTTS--SEEEEECSSSCEEEEETT
T ss_pred CCeEEEEEecCC--CeEEEEcCCCeEEEEECC
Confidence 468999998743 467777899999999874
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=88.49 E-value=0.43 Score=31.18 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=24.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|++|.|-+ ..++.++.|++|++|.+...
T Consensus 17 ~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~ 46 (397)
T 1sq9_A 17 ADIFSVSACN----SFTVSCSGDGYLKVWDNKLL 46 (397)
T ss_dssp SCEEEEEECS----SEEEEEETTSEEEEEESBCC
T ss_pred cCeEEEEecC----CeEEEEcCCCEEEEEECCCc
Confidence 4689999965 57788889999999998653
No 59
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.42 E-value=0.42 Score=35.62 Aligned_cols=32 Identities=3% Similarity=0.068 Sum_probs=23.9
Q ss_pred hhceeEeeeCC----CCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRK----NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~----~~~~~LLstNdktiKLWkv~e 66 (70)
-|+.|.|.+.. +...+.-++.|++|+||.+..
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 244 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence 48899999973 233444477899999999864
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=88.34 E-value=0.38 Score=29.97 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=24.3
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.|..+.|.+.+. ++.++.|++|++|++..
T Consensus 268 ~i~~~~~~~~~~---~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 268 SIWSVDCMSNGD---IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp CEEEEEECTTSC---EEEEETTSCEEEEESCG
T ss_pred eEEEEEEccCCC---EEEEeCCCcEEEEeCCC
Confidence 588899877654 78899999999999864
No 61
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=88.19 E-value=0.37 Score=30.66 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=26.6
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
-...|+.|.|.+ ...++.++.|++|++|.+..
T Consensus 100 ~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~ 131 (342)
T 1yfq_A 100 ANLGICRICKYG---DDKLIAASWDGLIEVIDPRN 131 (342)
T ss_dssp CCSCEEEEEEET---TTEEEEEETTSEEEEECHHH
T ss_pred CCCceEEEEeCC---CCEEEEEcCCCeEEEEcccc
Confidence 345789999998 56888899999999998763
No 62
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=87.68 E-value=0.63 Score=31.40 Aligned_cols=32 Identities=6% Similarity=0.298 Sum_probs=24.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|+.+.|-+. ...++.++.|++|++|.+...
T Consensus 241 ~~v~~~~~s~~--~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 241 ADVVDMKWSTD--GSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp SCEEEEEECTT--SCEEEEEETTCEEEEEESSCC
T ss_pred CcEEEEEECCC--CCEEEEEECCCEEEEEEccCC
Confidence 46788888664 456777789999999998653
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=87.53 E-value=0.52 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=24.1
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|++|.|.+. +.+.++-++.|++|+||.+.
T Consensus 164 ~~~V~~l~f~p~-~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 164 GGSITGLKFNPL-NTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp SCCCCEEEECSS-CTTEEEEECSSSCEEEEETT
T ss_pred CCCEEEEEEeCC-CCCEEEEEeCCCEEEEeecc
Confidence 456999999764 33466667789999999864
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=87.51 E-value=0.56 Score=29.72 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=24.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|..|.|.+ +...++.++.|++|++|.+.
T Consensus 74 ~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 74 TGTIWSIDVDC--FTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTTEEEEEETT
T ss_pred CCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC
Confidence 35688999976 34577788899999999874
No 65
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=87.47 E-value=0.88 Score=30.00 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=31.4
Q ss_pred eeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 10 EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 10 ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.+....+|+.|.. -|++|.|-+.. ...++-++.|++|++|.+..
T Consensus 6 ~~~l~~~l~gH~~------------~V~~l~~~~~~-~~~l~s~s~D~~v~~W~~~~ 49 (319)
T 3frx_A 6 VLVLRGTLEGHNG------------WVTSLATSAGQ-PNLLLSASRDKTLISWKLTG 49 (319)
T ss_dssp EEEEEEEECCCSS------------CEEEEEECSSC-TTEEEEEETTSEEEEEEEEE
T ss_pred EEEEEEEEccccc------------eEEEEEccCCC-ccEEEEecCCccEEEecCCC
Confidence 4556667788863 47788876533 35677778999999998863
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=87.24 E-value=0.69 Score=31.53 Aligned_cols=31 Identities=6% Similarity=-0.090 Sum_probs=22.9
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|++|.|-|.+ ..++=.+.|+||++|.|..
T Consensus 313 ~~V~~v~fSpdg--~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 313 FAITEVTISPDS--TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SCEEEEEECTTS--CEEEEEETTSEEEEEECCT
T ss_pred CCEEEEEECCCC--CEEEEEeCCCeEEEEEcCC
Confidence 458899996643 3455567899999999843
No 67
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=87.24 E-value=0.45 Score=34.70 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=22.9
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv 64 (70)
.-|+.+.|.+.+. ++-++.|++||||.+
T Consensus 582 ~~v~~v~fs~d~~---l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 582 SSVNSVIWLNETT---IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SCEEEEEEEETTE---EEEEETTSCEEEEEC
T ss_pred cCeeEEEEcCCCE---EEEecCCCCEEEEec
Confidence 5688999987642 666789999999997
No 68
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=87.20 E-value=0.89 Score=30.90 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=23.7
Q ss_pred hhceeEeeeCC----CCceEEeeeCCceeEeEEeeec
Q psy13888 35 KINKIRWLRRK----NQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 35 KIn~I~Wl~~~----~~~~~LLstNdktiKLWkv~e~ 67 (70)
.|..+.|.+.. +...++-++.|++|+||++...
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 46777777642 3445566678999999999764
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=87.09 E-value=0.87 Score=31.38 Aligned_cols=33 Identities=3% Similarity=0.159 Sum_probs=26.2
Q ss_pred hhh-hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEK-INKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEK-In~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
... |+++.|.+..+...++.++.|++|++|.+.
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~ 96 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 96 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCC
Confidence 345 899999884345577777899999999995
No 70
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=86.79 E-value=1.1 Score=30.38 Aligned_cols=30 Identities=10% Similarity=0.207 Sum_probs=23.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.+.|.+.+ ..++.++.|++|++|.+.
T Consensus 166 ~~v~~~~~~p~~--~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 166 QDIYSLDYFPSG--DKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp SCEEEEEECTTS--SEEEEEETTSEEEEEETT
T ss_pred CCEEEEEEcCCC--CEEEEecCCCcEEEEECC
Confidence 357889997654 467778899999999874
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=86.63 E-value=0.63 Score=31.21 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=25.8
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..-|+.|.|.+. +...++.++.|++|+||.+..
T Consensus 81 ~~~V~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 81 TAPVLDIAWCPH-NDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCEEEEEECTT-CTTEEEEEETTSEEEEEECCT
T ss_pred CCCEEEEEeCCC-CCCEEEEEeCCCeEEEEEccC
Confidence 456899999874 335777778899999999865
No 72
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.09 E-value=0.55 Score=31.02 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=24.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|..|.|-+..+...++-++.|++|+||.+..
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 568899988755556777788999999999753
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=85.91 E-value=0.75 Score=29.67 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=25.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|++|.|.+. +...++.++.|++|++|.+..
T Consensus 43 ~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~ 75 (408)
T 4a11_B 43 GGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLEN 75 (408)
T ss_dssp SSCEEEEEECTT-TCCEEEEEETTSCEEEEECCC
T ss_pred CCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCC
Confidence 367899999872 234677788999999999864
No 74
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=85.88 E-value=0.88 Score=29.68 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=25.1
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|+.|.|.+. ...++.++.|++|++|.+.
T Consensus 146 ~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 146 RSTILSLDWHPN--NVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp CSCEEEEEECTT--SSEEEEEESSSCEEEEEEC
T ss_pred CCCeEEEEEcCC--CCEEEEEeCCCEEEEEEEE
Confidence 467889999874 3577778899999999984
No 75
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=85.76 E-value=1.2 Score=29.42 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=24.3
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
+..+..+.|-+. ...++-.+.|++|+||.+..
T Consensus 286 ~~~v~~~~~spd--g~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 286 EPHAVSLAWSAD--GQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CCCEEEEEECTT--SSEEEEEETTSCEEEEEEEE
T ss_pred CcceeEEEECCC--CCEEEEeecCceEEEEEEee
Confidence 455778888654 44677778999999999864
No 76
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=85.52 E-value=0.71 Score=30.65 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.0
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.|.|.+. ...++.++.|++|+||.+.
T Consensus 227 ~~v~~v~~~p~--~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 227 SDINAICFFPN--GNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp SCEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCC--CCEEEEEcCCCcEEEEECC
Confidence 35888888764 4578888899999999874
No 77
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=85.38 E-value=1 Score=30.97 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=25.7
Q ss_pred hhhceeEeeeC-CCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRR-KNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~-~~~~~~LLstNdktiKLWkv~e 66 (70)
..|++|.|.+. .+...++.++.|++|++|.+..
T Consensus 196 ~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 196 SMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp SCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 46889999987 3345677778899999999853
No 78
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=85.36 E-value=0.93 Score=32.32 Aligned_cols=33 Identities=6% Similarity=0.140 Sum_probs=26.4
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+.|.|-+.. ...++.++.|++|++|.+..
T Consensus 149 ~~~V~~v~~~p~~-~~~las~s~Dg~v~iwD~~~ 181 (434)
T 2oit_A 149 GGMVIDMKWNPTV-PSMVAVCLADGSIAVLQVTE 181 (434)
T ss_dssp GGSEEEEEECSSC-TTEEEEEETTSCEEEEEESS
T ss_pred CCceEEEEECCCC-CCEEEEEECCCeEEEEEcCC
Confidence 5679999998763 35677788999999999864
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=85.32 E-value=0.61 Score=31.83 Aligned_cols=31 Identities=16% Similarity=0.390 Sum_probs=20.4
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeecC
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRFP 68 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~p 68 (70)
..|.++.| +...++.++.|++|++|.+...+
T Consensus 386 ~~v~~l~~----~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 386 GRVFRLQF----DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp SCCCCEEE----CSSCEEECCSSSEEEEEC-----
T ss_pred CCeEEEEe----CCCEEEEEeCCCEEEEEECCCCC
Confidence 35788888 44567777789999999997654
No 80
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=84.93 E-value=0.77 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=23.1
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|..+.|.+.+ ..++-++.|++|+||.+.
T Consensus 250 ~v~~~~~sp~~--~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 250 WVLNVAFCPDD--THFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp CEEEEEECTTS--SEEEEEETTSCEEEEETT
T ss_pred ceEEEEECCCC--CEEEEEeCCCcEEEEeCC
Confidence 47888887653 467778899999999874
No 81
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=84.82 E-value=0.8 Score=29.60 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=24.1
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|+.+.|.+.+. .++.++.|++|++|.+.
T Consensus 396 ~v~~~~~s~~~~--~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 396 YIFDLSWNCAGN--KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CEEEEEECTTSS--EEEEEESSSCCEEEECC
T ss_pred ceEEEEccCCCc--eEEEEecCceEEEEeec
Confidence 689999976654 67788999999999874
No 82
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=84.63 E-value=0.88 Score=31.31 Aligned_cols=30 Identities=7% Similarity=0.218 Sum_probs=23.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|.++.|.+.+ ..++-++.|++|++|.+.
T Consensus 193 ~~V~~v~~~p~~--~~l~s~s~D~~i~~wd~~ 222 (410)
T 1vyh_C 193 HNVSSVSIMPNG--DHIVSASRDKTIKMWEVQ 222 (410)
T ss_dssp SCEEEEEECSSS--SEEEEEETTSEEEEEETT
T ss_pred CCEEEEEEeCCC--CEEEEEeCCCeEEEEECC
Confidence 358888888753 467778899999999874
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.43 E-value=0.72 Score=31.12 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.9
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|..+.|.+ +...++.+++|++|++|.+..
T Consensus 218 ~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 218 SEVCGLAWRS--DGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTC
T ss_pred CCeeEEEEcC--CCCEEEEEeCCCeEEEccCCC
Confidence 4588899987 455788889999999998753
No 84
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=84.42 E-value=0.73 Score=31.06 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=24.0
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.|.|.+.+ ..++.++.|++|+||.+.
T Consensus 241 ~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 241 SDVNSVRYYPSG--DAFASGSDDATCRLYDLR 270 (354)
T ss_dssp SCEEEEEECTTS--SEEEEEETTSCEEEEETT
T ss_pred CCeEEEEEeCCC--CEEEEEeCCCeEEEEECC
Confidence 458889987644 577888899999999874
No 85
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=84.22 E-value=1.2 Score=28.78 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=25.6
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv 64 (70)
...|++|.|-+.+. ..++.++.|++|++|.+
T Consensus 45 ~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~ 75 (425)
T 1r5m_A 45 LDNIVSSTWNPLDE-SILAYGEKNSVARLARI 75 (425)
T ss_dssp CSCCSEEEECSSCT-TEEEEEETBTEEEEEEE
T ss_pred cCceEEEEECCCCC-cEEEEecCCceEEEEEE
Confidence 46799999987654 47777789999999999
No 86
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=84.13 E-value=0.79 Score=33.64 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=25.8
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.|+++.|.+......++-++.|++|++|.+..
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTT
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCC
Confidence 47888888876666777788999999998753
No 87
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=84.10 E-value=1.2 Score=27.86 Aligned_cols=32 Identities=3% Similarity=-0.063 Sum_probs=25.2
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-...|+.+.|.+.. ..++.++.|++|++|++.
T Consensus 305 ~~~~v~~~~~s~~~--~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 305 ESSSVLSCDISVDD--KYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CSSCEEEEEECTTS--CEEEEEETTSCEEEEEEE
T ss_pred CCCcEEEEEECCCC--CEEEEecCCCeEEEEEEe
Confidence 35678888887653 467778899999999984
No 88
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=84.00 E-value=0.98 Score=29.82 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=25.2
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+++.|.+. ...++.++.|++|++|.+..
T Consensus 139 ~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 139 VSEITKLKFFPS--GEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp SSCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred cCccEEEEECCC--CCEEEEEeCCCeEEEEeCCC
Confidence 456899999875 34777788999999998753
No 89
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=83.83 E-value=1.2 Score=27.83 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=26.4
Q ss_pred chhhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 31 EIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 31 eIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.-...|+.+.|.+. ...++.++.|++|++|.+..
T Consensus 95 ~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 95 NRDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp CTTSBEEEEEECTT--SSEEEEEESSSEEEEEECCC
T ss_pred CCCCcEEEEEEcCC--CCEEEEEcCCCcEEEEECCC
Confidence 34567889999874 45777788999999998754
No 90
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=83.74 E-value=1 Score=29.78 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=23.0
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+++.|-+.+ ..++-++.|++|+||.+.
T Consensus 119 ~~v~~v~~sp~~--~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 119 SEVYSVAFSPDN--RQILSAGAEREIKLWNIL 148 (343)
T ss_dssp SCEEEEEECSST--TEEEEEETTSCEEEEESS
T ss_pred CcEEEEEECCCC--CEEEEEcCCCEEEEEecc
Confidence 357888887643 467777899999999874
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=83.21 E-value=0.99 Score=30.55 Aligned_cols=29 Identities=3% Similarity=0.090 Sum_probs=23.1
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|.++.|.+.. .++.++.|++|++|.+.
T Consensus 163 ~~V~~l~~~~~~---~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 163 GGVWALKYAHGG---ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp SCEEEEEECSTT---EEEEEETTSCEEEEETT
T ss_pred cCEEEEEEcCCC---EEEEEeCCCCEEEEECC
Confidence 457888886543 78888999999999874
No 92
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=83.09 E-value=1.2 Score=30.36 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=21.5
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-|+++.|-+ +...+...+.|++|+||.+.
T Consensus 271 ~V~~~~~Sp--dg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 271 GITSMDVDM--KGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp CEEEEEECT--TSCEEEEEETTSCEEEEETT
T ss_pred CeEeEEECC--CCCceEEEcCCCEEEEEECC
Confidence 367777754 44567777899999999874
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=83.03 E-value=1 Score=30.35 Aligned_cols=31 Identities=6% Similarity=0.190 Sum_probs=25.1
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|..|.|.+ +...++.++.|++|++|.+.
T Consensus 134 ~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 134 STYVASVKWSH--DGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TCCEEEEEECT--TSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEECC--CCCEEEEECCCCeEEEEECc
Confidence 45689999987 44578888899999999864
No 94
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=82.54 E-value=1.2 Score=30.38 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=22.8
Q ss_pred hhhceeEeeeCCCCceEEee-eCCceeEeEEeeecC
Q psy13888 34 EKINKIRWLRRKNQAHFLLS-TNDFEFLIFIYSRFP 68 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLs-tNdktiKLWkv~e~p 68 (70)
..|+.+.|-+... .+|.| +.|++|++|.|...|
T Consensus 300 ~~V~~v~~sp~~~--~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 300 DFVRDATWSPLNH--SLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SCEEEEEECSSST--TEEEEEETTSCEEEEECCC--
T ss_pred CCEEEEEEeCCCC--eEEEEEcCCCeEEEEECCCCC
Confidence 4588999966432 34544 589999999997644
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=82.15 E-value=1.2 Score=29.90 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.0
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|..|.|.+ +...++.++.|++|++|.+.
T Consensus 176 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 176 PDTIYSVDWSR--DGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp CSCEEEEEECT--TSSCEEEEETTSEEEEEETT
T ss_pred CCceEEEEECC--CCCEEEEEecCCcEEEEeCC
Confidence 45688999987 44578888899999999875
No 96
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=81.94 E-value=1.7 Score=27.99 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=24.4
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|+.+.|.+.+ ..++.++.|++|++|.+..
T Consensus 335 ~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 335 KTVDCCVFQSNF--QELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp SCEEEEEEETTT--TEEEEEETTSCEEEEEECC
T ss_pred CeEEEEEEcCCC--CEEEEECCCCeEEEEeCCC
Confidence 468889998654 4666777899999999865
No 97
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=81.88 E-value=1.6 Score=28.55 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=25.3
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|+.|.|.+.. ...++.++.|++|++|.+...
T Consensus 306 ~~v~~~~~s~~~-~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 306 NWCFKTKFAPEA-PDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp SCCCCEEECTTC-TTEEEECCSSSEEEEEESCCC
T ss_pred CceEEEEECCCC-CCEEEEEecCCcEEEEEccCC
Confidence 458889998754 246777788999999998754
No 98
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=81.84 E-value=1.3 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=22.1
Q ss_pred hhceeEeeeCCC------------------CceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKN------------------QAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~------------------~~~~LLstNdktiKLWkv~ 65 (70)
-|++|.|.+... ...++-.+.|++|+||.+.
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 467788876532 3456667789999999874
No 99
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=81.57 E-value=1.4 Score=29.07 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=24.6
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|..+.|.+. ...++.++.|++|++|.+.
T Consensus 181 ~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 181 RATVTDIAIIDR--GRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp SSCEEEEEEETT--TTEEEEEETTSCEEEEETT
T ss_pred CCcEEEEEEcCC--CCEEEEEcCCCcEEEeECC
Confidence 346889999874 4577788899999999874
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=81.44 E-value=1.2 Score=29.96 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=23.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCce-eEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFE-FLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdkt-iKLWkv~ 65 (70)
..|++|.|-+ +...++-++.|++ |+||.+.
T Consensus 196 ~~v~~~~~s~--~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 196 NPIKMVRLNR--KSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp SCEEEEEECT--TSSEEEEEETTCSEEEEEETT
T ss_pred CceEEEEECC--CCCEEEEEeCCCCEEEEEECC
Confidence 4588999977 3456777789999 9999875
No 101
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=79.69 E-value=1.3 Score=33.57 Aligned_cols=34 Identities=12% Similarity=0.341 Sum_probs=28.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
..|.++.|.+..+...++.++.|++|++|.+...
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~ 133 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence 4688999988765678999999999999998654
No 102
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=79.31 E-value=1.5 Score=31.90 Aligned_cols=32 Identities=9% Similarity=0.157 Sum_probs=24.2
Q ss_pred hhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 32 IEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 32 IeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-...|..+.|-+. ...++-++.|++|+||.+.
T Consensus 238 h~~~V~~v~~spd--g~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 238 HSGSVFGLTWSPD--GTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SSSCEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred cCCCEEEEEECCC--CCEEEEEeCCCeEEEEeCC
Confidence 3456888888764 3466777899999999875
No 103
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=78.92 E-value=1.8 Score=29.27 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=23.3
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|+.|.|-|.. ...++-++.|++|++|.+..
T Consensus 311 ~~~V~~vafsP~d-~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 311 RDFVTGVAWSPLD-HSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp SSCEEEEEECSSS-TTEEEEEETTSCEEEEECC-
T ss_pred CCCEEEEEEeCCC-CCEEEEEcCCCeEEEEECCC
Confidence 4568899996532 33555567899999999854
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=78.54 E-value=2.2 Score=29.35 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=24.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|+.+.|.+... -.++-++.|++|++|++.+
T Consensus 379 ~~v~~~~~~p~~~-~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 379 AKISDFSWNPNEP-WIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SCEEEEEECSSST-TEEEEEETTSEEEEEEECH
T ss_pred CCceEEEECCCCC-CEEEEEECCCCEEEeEccc
Confidence 3589999987543 3566678899999999864
No 105
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=78.44 E-value=2.3 Score=31.17 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=20.3
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
++++.|-+ +...++-.+.|++|++|.+..
T Consensus 665 ~~~l~~sp--dg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 665 CTSLNWSA--DGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp EEEEEECT--TSSEEEEEETTSEEEEEEC--
T ss_pred eeeEEEcC--CCCEEEEEcCCCeEEEEeccC
Confidence 45677754 445677778999999999864
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.08 E-value=1.9 Score=28.33 Aligned_cols=30 Identities=10% Similarity=-0.024 Sum_probs=22.2
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
.|+++.|-+. ...+...+.|++|+||.+..
T Consensus 172 ~i~~~~~~pd--g~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 172 EYSSGVLHKD--SLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCEEEECTT--SCEEEEECTTSCEEEEESSC
T ss_pred ceEEEEECCC--CCEEEEEcCCCEEEEEECCC
Confidence 4888888764 33444558999999999864
No 107
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=77.85 E-value=1.5 Score=34.56 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=24.3
Q ss_pred hhhhceeEee-----eCC-CCceEEeeeCCceeEeEEe
Q psy13888 33 EEKINKIRWL-----RRK-NQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 33 eEKIn~I~Wl-----~~~-~~~~~LLstNdktiKLWkv 64 (70)
...|++|.|- +.+ ....++..++|+||++|.+
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 3458899998 543 2345667789999999998
No 108
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=77.47 E-value=4 Score=28.20 Aligned_cols=29 Identities=3% Similarity=0.052 Sum_probs=21.7
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|.++.|-+. ...++-++.|++|+||.+.
T Consensus 59 ~V~~l~fspd--g~~las~~~d~~i~vWd~~ 87 (577)
T 2ymu_A 59 SVWGVAFSPD--GQTIASASDDKTVKLWNRN 87 (577)
T ss_dssp CEEEEEECTT--SSEEEEEETTSCEEEEETT
T ss_pred CEEEEEECCC--CCEEEEEeCCCEEEEEECC
Confidence 5788888664 3456667799999999853
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=77.10 E-value=2.3 Score=29.16 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=23.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.|.|. +...++..+.|++|+||.+.
T Consensus 242 ~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 242 HFVSSICCG---KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp SCEEEEEEC---STTEEEEEESSSEEEEEETT
T ss_pred CceEEEEEC---CCCEEEEEeCCCeEEEEECC
Confidence 467888887 55677788899999999874
No 110
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=76.76 E-value=2.2 Score=31.80 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=26.5
Q ss_pred hhhceeEeeeCCCCceEEeeeCC-ceeEeEEeee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTND-FEFLIFIYSR 66 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNd-ktiKLWkv~e 66 (70)
..|+++.|-+..+....|.++++ ++||||++.-
T Consensus 484 ~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 484 INITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 56899999998875666777666 9999999864
No 111
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=76.42 E-value=2.7 Score=30.50 Aligned_cols=32 Identities=13% Similarity=0.359 Sum_probs=27.8
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.+.|.+..+...++.++.|++|++|.+.
T Consensus 185 ~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp TCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred CCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 66889999997777888999999999999864
No 112
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=76.36 E-value=4.5 Score=27.94 Aligned_cols=29 Identities=3% Similarity=0.087 Sum_probs=22.4
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEe
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIY 64 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv 64 (70)
..|++|.|.+.+ ..++.++.|++|+||.+
T Consensus 509 ~~v~~l~~s~dg--~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 509 SSVRGVAFSPDG--QTIASASDDKTVKLWNR 537 (577)
T ss_dssp SCEEEEEECTTS--SCEEEEETTSEEEEECT
T ss_pred CCEEEEEEcCCC--CEEEEEECcCEEEEEeC
Confidence 458889987643 46667789999999974
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=75.30 E-value=2.4 Score=28.83 Aligned_cols=28 Identities=4% Similarity=0.169 Sum_probs=21.2
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|.++.| +...++.++.|++|++|.+.
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESS
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECC
Confidence 35677777 45677778889999999875
No 114
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=74.44 E-value=6.5 Score=26.63 Aligned_cols=27 Identities=7% Similarity=0.261 Sum_probs=20.4
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|.++.| +...++.++.|++|++|.+.
T Consensus 281 ~v~~~~~----~~~~l~~~~~d~~i~i~d~~ 307 (445)
T 2ovr_B 281 RVYSLQF----DGIHVVSGSLDTSIRVWDVE 307 (445)
T ss_dssp CEEEEEE----CSSEEEEEETTSCEEEEETT
T ss_pred ceEEEEE----CCCEEEEEeCCCeEEEEECC
Confidence 4677777 45677778889999999864
No 115
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=73.36 E-value=2 Score=30.57 Aligned_cols=31 Identities=3% Similarity=0.248 Sum_probs=25.7
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|+++.|-+. ...++.++.|++|++|.+.
T Consensus 192 ~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 192 TVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp GGCEEEEEECTT--SSCEEEEETTSCEEEECTT
T ss_pred CCceeEEEEcCC--CCEEEEEcCCCcEEEEccC
Confidence 567999999765 4578888999999999865
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=73.28 E-value=2.6 Score=31.61 Aligned_cols=26 Identities=23% Similarity=0.609 Sum_probs=18.0
Q ss_pred eeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 38 KIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 38 ~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.+.|=+ +...++-.+.|+|||||.+.
T Consensus 331 ~vafSP--DG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 331 FVKWSG--TDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEEECS--SSSEEEEECTTSCEEEEEEC
T ss_pred EEEECC--CCCEEEEEECCCcEEEecCC
Confidence 456654 34455566789999999863
No 117
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=71.31 E-value=4.1 Score=27.59 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=21.2
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.-|.++.| +...++.++.|++|++|.+.
T Consensus 363 ~~v~~~~~----~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 363 SAVTCLQF----NKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SCEEEEEE----CSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEE----CCCEEEEEeCCCeEEEEECC
Confidence 34677777 24577778899999999875
No 118
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=70.01 E-value=3.7 Score=32.37 Aligned_cols=30 Identities=7% Similarity=0.215 Sum_probs=23.5
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
...|+.|.|.+ +. .++-.+.|++|+||.+.
T Consensus 58 ~~~V~~l~fsp--g~-~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 58 RSAIKEMRFVK--GI-YLVVINAKDTVYVLSLY 87 (902)
T ss_dssp CCCEEEEEEET--TT-EEEEEETTCEEEEEETT
T ss_pred CCCEEEEEEcC--CC-EEEEEECcCeEEEEECC
Confidence 45699999998 33 56666789999999874
No 119
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=69.25 E-value=4.1 Score=31.52 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=26.8
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|.++.|.+..+...++.+++|++|++|.+.
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~ 731 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETT
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECC
Confidence 45888999888777778888999999999864
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=66.40 E-value=4.8 Score=32.18 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=23.7
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
|.++.| ++++..+..++.|++||||.+...
T Consensus 132 v~svaf--SPDG~~LAsgs~DGtVkIWd~~~~ 161 (588)
T 2j04_A 132 YHCFEW--NPIESSIVVGNEDGELQFFSIRKN 161 (588)
T ss_dssp EEEEEE--CSSSSCEEEEETTSEEEEEECCCC
T ss_pred EEEEEE--cCCCCEEEEEcCCCEEEEEECCCC
Confidence 778998 445667777888999999997653
No 121
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=66.21 E-value=3 Score=30.80 Aligned_cols=27 Identities=0% Similarity=0.069 Sum_probs=22.3
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
|+.|+|++.. +++.++|++|.+|.+.+
T Consensus 129 v~~i~~~~p~----~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 129 VFQLKNVNNT----LVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEEEEECSSE----EEEEETTSEEEEEETTT
T ss_pred eeeEEecCCC----EEEEECCCCEEEEEccC
Confidence 6788888652 88889999999998863
No 122
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.59 E-value=7 Score=28.33 Aligned_cols=30 Identities=20% Similarity=0.553 Sum_probs=24.6
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|..+.|.+.+ ..++.++.|++|++|.+.
T Consensus 56 ~~v~~~~~s~~~--~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 56 TPVRAGKFIARK--NWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp SCEEEEEEEGGG--TEEEEEETTSEEEEEETT
T ss_pred CcEEEEEEeCCC--CEEEEEeCCCeEEEEECC
Confidence 458999998854 468888899999999864
No 123
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=56.91 E-value=9.8 Score=29.46 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=23.7
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
..|+.+.|.+. ...++.++.|++|++|.+.
T Consensus 744 ~~v~~~~~sp~--~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 744 NSVNHCRFSPD--DELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp SCEEEEEECSS--TTEEEEEESSSEEEEEEGG
T ss_pred CCEEEEEEecC--CCEEEEEECCCeEEEEeCC
Confidence 45788888764 3477888899999999875
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=56.58 E-value=8.9 Score=28.72 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=32.8
Q ss_pred ceeeEEEeeeccCcccccccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEeeec
Q psy13888 9 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 9 ~ey~~~teFQSHe~EFDYLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e~ 67 (70)
+..+.+++||--+ -|+-++ +..+.|=..+...+.++++-+.+|+||++...
T Consensus 23 ~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~ 73 (356)
T 2w18_A 23 GNLQLVSELKNPS------GSCSVD--VSAMFWERAGCKEPCIITACEDVVSLWKALDA 73 (356)
T ss_dssp -CEEEEEEECCCC------SSCEEE--EEEEEEC----CEEEEEEEESSEEEEEEESSS
T ss_pred ceeeeeehhcCCC------CCeEEE--EeeeeeccCCCCccEEEEeccceEEEcccCCC
Confidence 4566666666321 122222 56788888888999999999999999998753
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=55.01 E-value=6.3 Score=26.10 Aligned_cols=38 Identities=8% Similarity=0.138 Sum_probs=25.6
Q ss_pred cccccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 26 YLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 26 YLkSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
-+..+.....+..+.|-+ +...++.++.|++|.+|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 115 FISRFKTGFQPKSVRFID--NTRLAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECSSCBCCCEESS--SSEEEEEBTTSSSEEEEETT
T ss_pred EEEEEcCCCCceEEEEeC--CCeEEEEeCCCCeEEEEECC
Confidence 344444556677888876 44556666678899999864
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=53.65 E-value=11 Score=25.59 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.6
Q ss_pred cchhhhhceeEeeeCC-CCceEEeeeCCceeEeEEeeec
Q psy13888 30 LEIEEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYSRF 67 (70)
Q Consensus 30 leIeEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~e~ 67 (70)
+-++..-..+.|+... +...++..+.|..|++|.+.+.
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~ 50 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEE 50 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEEC
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCC
Confidence 4455666789999765 4556778888999999998764
No 127
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=52.56 E-value=11 Score=28.23 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=21.9
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.+...+.|.+.+ .+|.++ |++|+||.+.
T Consensus 17 ~~~~~~~w~~dg---~~~~~~-~~~i~~~~~~ 44 (740)
T 4a5s_A 17 LKLYSLRWISDH---EYLYKQ-ENNILVFNAE 44 (740)
T ss_dssp CCCCCEEECSSS---EEEEEE-TTEEEEEETT
T ss_pred ccccccEECCCC---cEEEEc-CCcEEEEECC
Confidence 456689999875 577776 9999999864
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=51.57 E-value=8.8 Score=25.40 Aligned_cols=29 Identities=7% Similarity=0.077 Sum_probs=20.7
Q ss_pred hhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 35 KINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 35 KIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.|+.+.|- .+...++..+.|++|++|.+.
T Consensus 171 ~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~ 199 (433)
T 3bws_A 171 FVETISIP--EHNELWVSQMQANAVHVFDLK 199 (433)
T ss_dssp EEEEEEEG--GGTEEEEEEGGGTEEEEEETT
T ss_pred ceeEEEEc--CCCEEEEEECCCCEEEEEECC
Confidence 57778883 334456666788999999864
No 129
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=49.92 E-value=13 Score=24.26 Aligned_cols=34 Identities=3% Similarity=-0.046 Sum_probs=22.2
Q ss_pred cchhhhhceeEeeeCCCCceEEe-eeCCceeEeEEee
Q psy13888 30 LEIEEKINKIRWLRRKNQAHFLL-STNDFEFLIFIYS 65 (70)
Q Consensus 30 leIeEKIn~I~Wl~~~~~~~~LL-stNdktiKLWkv~ 65 (70)
+.....+..+.|-+.+ ..+++ .+.|++|++|.+.
T Consensus 28 ~~~~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDG--TKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EECSSSEEEEEECTTS--SEEEEEEGGGTEEEEEETT
T ss_pred eecCCCcceEEECCCC--CEEEEECCCCCeEEEEECC
Confidence 3344557788886644 34434 4489999999863
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=46.99 E-value=17 Score=22.59 Aligned_cols=36 Identities=6% Similarity=-0.014 Sum_probs=24.7
Q ss_pred cccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 28 KSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 28 kSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+.+.....+..+.|-+.+ ..+++++.|.+|.+|.+.
T Consensus 274 ~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 274 KRVPLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEECSSCCCEEEECTTS--CEEEEESBSSEEEEEETT
T ss_pred ceecCCCceeeEEECCCC--CEEEEEcCCCcEEEEECc
Confidence 344445567777776543 466777889999999864
No 131
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=45.51 E-value=4.3 Score=29.26 Aligned_cols=33 Identities=6% Similarity=0.223 Sum_probs=25.3
Q ss_pred cchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 30 LEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 30 leIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.....++..+.|.+.+. ++.++.|++|++|.+.
T Consensus 13 ~~~~~~~~~~~~spdg~---~~~~~~dg~i~~~d~~ 45 (723)
T 1xfd_A 13 EDFKIHDPEAKWISDTE---FIYREQKGTVRLWNVE 45 (723)
T ss_dssp TTTCCCCCCCCBSSSSC---BCCCCSSSCEEEBCGG
T ss_pred CCCcccccccEEcCCCc---EEEEeCCCCEEEEECC
Confidence 34556788999998665 5667889999999764
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=43.70 E-value=22 Score=21.32 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=22.8
Q ss_pred hhhhceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
...|..+.|-+.+. +|+++.|..|.+|.+..
T Consensus 41 ~~~v~~~~~spdg~---~l~~~~~~~i~~~d~~~ 71 (297)
T 2ojh_A 41 PELFEAPNWSPDGK---YLLLNSEGLLYRLSLAG 71 (297)
T ss_dssp SSCCEEEEECTTSS---EEEEEETTEEEEEESSS
T ss_pred CcceEeeEECCCCC---EEEEEcCCeEEEEeCCC
Confidence 45688899876543 55666788999998754
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=42.90 E-value=35 Score=21.24 Aligned_cols=40 Identities=8% Similarity=0.237 Sum_probs=25.2
Q ss_pred cccccccchhhhhceeEeeeCCCCceEEeeeC-CceeEeEEee
Q psy13888 24 FDYLKSLEIEEKINKIRWLRRKNQAHFLLSTN-DFEFLIFIYS 65 (70)
Q Consensus 24 FDYLkSleIeEKIn~I~Wl~~~~~~~~LLstN-dktiKLWkv~ 65 (70)
+..+..+.....+..+.|-+.+ ..++.++. +++|.+|.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 28 LTLTQVVDVPGQVQPMVVSPDK--RYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEEEECSSCCCCEEECTTS--SEEEEEETTTTEEEEEEEC
T ss_pred EEEeeeEecCCCCceEEECCCC--CEEEEeecCCCeEEEEEec
Confidence 3344555556677888886543 33444444 3999999986
No 134
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=39.10 E-value=21 Score=25.85 Aligned_cols=25 Identities=12% Similarity=0.409 Sum_probs=20.2
Q ss_pred eeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 38 KIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 38 ~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
.+.|.+.+ .++.++.|++|++|.+.
T Consensus 20 ~~~~s~dg---~~~~~~~d~~i~~~~~~ 44 (719)
T 1z68_A 20 FPNWISGQ---EYLHQSADNNIVLYNIE 44 (719)
T ss_dssp CCEESSSS---EEEEECTTSCEEEEESS
T ss_pred ccEECCCC---eEEEEcCCCCEEEEEcC
Confidence 57888765 57888899999999874
No 135
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=37.92 E-value=30 Score=21.68 Aligned_cols=36 Identities=8% Similarity=0.171 Sum_probs=24.0
Q ss_pred cccchhhhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 28 KSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 28 kSleIeEKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
+.+.....+..+.|-+. ...+++++.|++|.+|.+.
T Consensus 289 ~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 289 KAANLDHTYYCVAFDKK--GDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEECSSCCCEEEECSS--SSCEEEESBSSEEEEEETT
T ss_pred EEEcCCCCccceEECCC--CCEEEEecCCCeEEEEecc
Confidence 44444555677777554 3455667888999999864
No 136
>2ehw_A Hypothetical protein TTHB059; extended alpha-helix, NPPSFA, national project on protein ST and functional analyses; 2.22A {Thermus thermophilus}
Probab=37.29 E-value=6.9 Score=26.35 Aligned_cols=15 Identities=33% Similarity=0.527 Sum_probs=12.6
Q ss_pred Ccccccccccchhhh
Q psy13888 21 EPEFDYLKSLEIEEK 35 (70)
Q Consensus 21 e~EFDYLkSleIeEK 35 (70)
+||.|||+++-|.-|
T Consensus 71 dPe~~YlRg~Lvavr 85 (120)
T 2ehw_A 71 EPEEPYWRGLLLAVE 85 (120)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHH
Confidence 899999999987543
No 137
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=33.76 E-value=14 Score=21.39 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=10.2
Q ss_pred ccccccccchhh
Q psy13888 23 EFDYLKSLEIEE 34 (70)
Q Consensus 23 EFDYLkSleIeE 34 (70)
+|++||++..+|
T Consensus 3 df~fLk~ls~eE 14 (51)
T 2jo8_A 3 DYEFLKSWTVED 14 (51)
T ss_dssp CCGGGGGSCHHH
T ss_pred ccHHHHhCCHHH
Confidence 799999887776
No 138
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=29.30 E-value=30 Score=27.14 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=29.2
Q ss_pred hhhhceeEeeeCC-CCceEEeeeCCceeEeEEeee
Q psy13888 33 EEKINKIRWLRRK-NQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 33 eEKIn~I~Wl~~~-~~~~~LLstNdktiKLWkv~e 66 (70)
+..|.++.|=|-+ +.+.+++-|.|.+|++|.++.
T Consensus 124 ~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 124 KSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred CCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 5679999998876 468899999999999999874
No 139
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=27.11 E-value=76 Score=19.76 Aligned_cols=27 Identities=15% Similarity=0.454 Sum_probs=18.1
Q ss_pred ceeEeeeCCCCceEEeeeCCceeEeEEeee
Q psy13888 37 NKIRWLRRKNQAHFLLSTNDFEFLIFIYSR 66 (70)
Q Consensus 37 n~I~Wl~~~~~~~~LLstNdktiKLWkv~e 66 (70)
..|.+-+. . .++++..|++|++|++..
T Consensus 254 ~~i~~~~~--g-~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 254 FDVALMDD--G-SVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEETT--T-EEEEEETTTEEEEEECSC
T ss_pred eeEEECCC--C-cEEEECCCCeEEEEEccc
Confidence 34555442 2 466667799999999854
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=25.85 E-value=48 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.493 Sum_probs=18.4
Q ss_pred hhhceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 34 EKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 34 EKIn~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
++++.+.|+ ...++-+.+|+ | +|.+.
T Consensus 26 ~~~~~~~w~----g~~~~~~~~~~-i-~~d~~ 51 (706)
T 2z3z_A 26 EYVVGLQWM----GDNYVFIEGDD-L-VFNKA 51 (706)
T ss_dssp --CTTCEEE----TTEEEEEETTE-E-EEEC-
T ss_pred ccCCCCcCc----CCeEEEEeCCc-E-EEECC
Confidence 457889999 34677777888 8 99864
No 141
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.73 E-value=23 Score=24.91 Aligned_cols=19 Identities=32% Similarity=0.642 Sum_probs=17.6
Q ss_pred eEEEeeeccCccccccccc
Q psy13888 12 NVYSTFQSHEPEFDYLKSL 30 (70)
Q Consensus 12 ~~~teFQSHe~EFDYLkSl 30 (70)
+-+|+|.+|+--=|||+||
T Consensus 77 ~a~T~F~G~~lT~DklrSl 95 (198)
T 3j20_A 77 NAYTKFKGMKLARSYIRSL 95 (198)
T ss_dssp EEEEEEEEECCCHHHHHHH
T ss_pred EEEEEEcceeechhhhhhh
Confidence 5689999999999999997
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=20.45 E-value=74 Score=22.98 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=19.9
Q ss_pred hceeEeeeCCCCceEEeeeCCceeEeEEee
Q psy13888 36 INKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65 (70)
Q Consensus 36 In~I~Wl~~~~~~~~LLstNdktiKLWkv~ 65 (70)
++.+.|.+.+. .++.+..|+++.||.+.
T Consensus 339 ~~~~~~spdg~--~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 339 HNSLRFLDDGS--ILWSSERTGFQHLYRID 366 (741)
T ss_dssp CSCCEECTTSC--EEEEECTTSSCEEEEEC
T ss_pred CCceEECCCCe--EEEEecCCCccEEEEEc
Confidence 35677766543 56666778899999875
Done!