RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13888
         (70 letters)



>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
           subunit [Signal transduction mechanisms].
          Length = 460

 Score = 78.1 bits (192), Expect = 6e-19
 Identities = 32/50 (64%), Positives = 35/50 (70%)

Query: 7   KRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
              EY  ++ FQSHE EFDYLKSLEIEEKIN I W     + HFLLSTND
Sbjct: 59  YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108


>gnl|CDD|236720 PRK10577, PRK10577, iron-hydroxamate transporter permease
          subunit; Provisional.
          Length = 668

 Score = 27.9 bits (63), Expect = 0.35
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 47 QAHFLLSTNDFEFLIFIYSRFPR 69
          QA +    +D E L+  YSR PR
Sbjct: 43 QALWGPDADDLEQLLLHYSRLPR 65


>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional.
          Length = 310

 Score = 27.3 bits (60), Expect = 0.57
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 3   TSIPKRGEYNV----YSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 56
           T +P+    N+    Y   Q +EP FDY       +KIN+     R       LST D
Sbjct: 124 TFLPEENAENIQILRYEHGQKYEPHFDYF-----HDKINQALGGHRYATVLMYLSTVD 176


>gnl|CDD|215476 PLN02881, PLN02881, tetrahydrofolylpolyglutamate synthase.
          Length = 530

 Score = 26.2 bits (58), Expect = 1.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 24 FDYLKSLEIEEKINK 38
          FDYLK LE+EE I++
Sbjct: 46 FDYLKILELEEAISR 60


>gnl|CDD|99977 cd03805, GT1_ALG2_like, This family is most closely related to the
           GT1 family of glycosyltransferases.  ALG2, a
           1,3-mannosyltransferase, in yeast catalyzes the
           mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate
           and Man(1)GlcNAc(2)-dolichol diphosphate to form
           Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of
           this enzyme causes an abnormal accumulation of
           Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol,
           which is associated with a type of congenital disorders
           of glycosylation (CDG), designated CDG-Ii, in humans.
          Length = 392

 Score = 25.2 bits (56), Expect = 2.7
 Identities = 9/32 (28%), Positives = 11/32 (34%)

Query: 27  LKSLEIEEKINKIRWLRRKNQAHFLLSTNDFE 58
             S E   +      L  K+     LS N FE
Sbjct: 190 TDSFESTSEDPDPGLLIPKSGKKTFLSINRFE 221


>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
           GT1 family of glycosyltransferases. AmSD in Erwinia
           amylovora has been shown to be involved in the
           biosynthesis of amylovoran, the acidic exopolysaccharide
           acting as a virulence factor. This enzyme may be
           responsible for the formation of  galactose alpha-1,6
           linkages in amylovoran.
          Length = 348

 Score = 24.9 bits (55), Expect = 3.9
 Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 14/69 (20%)

Query: 10  EYNVYSTFQSHEPEFDYLKSLEIE--------------EKINKIRWLRRKNQAHFLLSTN 55
           E  + S  +   P ++    +++               +K+ ++R L + N+   ++S  
Sbjct: 32  EVTIISLDKGEPPFYELDPKIKVIDLGDKRDSKLLARFKKLRRLRKLLKNNKPDVVISFL 91

Query: 56  DFEFLIFIY 64
                    
Sbjct: 92  TSLLTFLAS 100


>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate
           pyrophosphohydrolases/synthetases [Signal transduction
           mechanisms / Transcription].
          Length = 701

 Score = 24.5 bits (54), Expect = 4.9
 Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 32  IEEKINKIRWLRRKNQAHFLLSTNDFEFL 60
                 KI WLR+  +     S +  EFL
Sbjct: 350 GSAYEEKIAWLRQLLE-WQEESADSGEFL 377


>gnl|CDD|225903 COG3368, COG3368, Predicted permease [General function prediction
           only].
          Length = 465

 Score = 24.3 bits (53), Expect = 5.8
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 6   PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDFEFLIFIYS 65
           PK GE     + +S  P   +L        I   + + RK Q   LL    F  +  +YS
Sbjct: 249 PKIGEVKGEYSIKSRSPLLSFL--------IKDFKLIFRKPQLLVLLIMPLFIMMELVYS 300


>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase.
          Length = 321

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 17  FQSHEPEFDYLKSLEIEEKINKI 39
           FQ+ EP F+ +K++E    +N I
Sbjct: 296 FQAKEPRFEAMKAMETTVNLNPI 318


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,644,891
Number of extensions: 272240
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 18
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)