RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13888
         (70 letters)



>d1jb0d_ d.187.1.1 (D:) Photosystem I subunit PsaD {Synechococcus
           elongatus [TaxId: 32046]}
          Length = 138

 Score = 23.2 bits (50), Expect = 3.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 6   PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 40
            K  +Y +Y  F   E    + K     EK+NK R
Sbjct: 75  RKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGR 109


>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
          (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 22.9 bits (48), Expect = 4.5
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 28 KSLEIEEK-INKIRWL-----RRKNQAHFLLSTNDFEFLIFIYSRFPRH 70
           + E+ EK +N IR+L      + N  H  L          +Y    R+
Sbjct: 2  ATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRY 50


>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 381

 Score = 22.7 bits (48), Expect = 6.1
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 9/40 (22%)

Query: 5   IPKRGEYNV---YSTFQSHEPEFDYLKSLEIEEKINKIRW 41
           I  +  +NV   + T Q      +Y  ++   E+  +  +
Sbjct: 334 INSQAHFNVQAQFGTLQ------EYFDAVHQAERAGQAEF 367


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 270,009
Number of extensions: 10519
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 10
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)