BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13892
         (628 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
           Chlb)2 Complex
          Length = 460

 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 482 EFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGL 536
           E + PI      G K E ++    +Y P     L   L DP+ TQL LEL  +G+
Sbjct: 168 EERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSLPDPVVTQLTLELKKQGI 222


>pdb|4GMJ|B Chain B, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
           Caf1
 pdb|4GMJ|D Chain D, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
           Caf1
 pdb|4GMJ|F Chain F, Structure Of Human Not1 Mif4g Domain Co-Crystallized With
           Caf1
          Length = 285

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 12/72 (16%)

Query: 137 ELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLAS----FFDILGLWT 192
           EL+ TS V    G+ W        L FH  Y  G + K L  S L      FF+IL L+ 
Sbjct: 138 ELLMTSGVVLCEGVKW--------LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF 189

Query: 193 PIIMSLKLLVQS 204
           P+I  +K L++S
Sbjct: 190 PVIYDVKYLMKS 201


>pdb|2D5R|A Chain A, Crystal Structure Of A Tob-Hcaf1 Complex
          Length = 252

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 12/73 (16%)

Query: 136 PELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLAS----FFDILGLW 191
            EL+ TS V    G+ W        L FH  Y  G + K L  S L      FF+IL L+
Sbjct: 127 AELLMTSGVVLCEGVKW--------LSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLF 178

Query: 192 TPIIMSLKLLVQS 204
            P+I  +K L++S
Sbjct: 179 FPVIYDVKYLMKS 191


>pdb|4BD2|A Chain A, Bax Domain Swapped Dimer In Complex With Bidbh3
 pdb|4BD6|A Chain A, Bax Domain Swapped Dimer In Complex With Baxbh3
 pdb|4BD7|A Chain A, Bax Domain Swapped Dimer Induced By Octylmaltoside
 pdb|4BD7|B Chain B, Bax Domain Swapped Dimer Induced By Octylmaltoside
 pdb|4BD7|C Chain C, Bax Domain Swapped Dimer Induced By Octylmaltoside
 pdb|4BD7|D Chain D, Bax Domain Swapped Dimer Induced By Octylmaltoside
 pdb|4BD8|A Chain A, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
 pdb|4BD8|D Chain D, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
 pdb|4BD8|C Chain C, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
 pdb|4BD8|B Chain B, Bax Domain Swapped Dimer Induced By Bimbh3 With Chaps
          Length = 174

 Score = 29.3 bits (64), Expect = 6.4,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 80  DQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLN------LREWASNYPSVLIGT 133
           D+L +N+ +  ++  V+ +   E F   A  +FSD + N      L  +AS      + T
Sbjct: 68  DELDSNMELQRMIAAVDTDSPREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLKALST 127

Query: 134 LSPELVNT 141
             PEL+ T
Sbjct: 128 KVPELIRT 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,431,638
Number of Sequences: 62578
Number of extensions: 832575
Number of successful extensions: 1738
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 9
length of query: 628
length of database: 14,973,337
effective HSP length: 105
effective length of query: 523
effective length of database: 8,402,647
effective search space: 4394584381
effective search space used: 4394584381
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)