BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13892
         (628 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q7MW41|LGT_PORGI Prolipoprotein diacylglyceryl transferase OS=Porphyromonas
           gingivalis (strain ATCC BAA-308 / W83) GN=lgt PE=3 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 180 VLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPV 239
           VL + F    +W  ++ +L L++   WI+KK W+ E   K   K+ E +    FV  I  
Sbjct: 14  VLFTLFGHPIVWYGLLFALGLIILGPWIEKKMWEHE---KLDSKWFESLAVYVFVGTIVG 70

Query: 240 AR 241
           AR
Sbjct: 71  AR 72


>sp|B2RJ03|LGT_PORG3 Prolipoprotein diacylglyceryl transferase OS=Porphyromonas
           gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
           GN=lgt PE=3 SV=1
          Length = 283

 Score = 33.1 bits (74), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 180 VLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPV 239
           VL + F    +W  ++ +L L++   WI+KK W+ E   K   K+ E +    FV  I  
Sbjct: 14  VLFTLFGHPIVWYGLLFALGLIILGPWIEKKMWEHE---KLDSKWFESLAVYVFVGTIVG 70

Query: 240 AR 241
           AR
Sbjct: 71  AR 72


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 241,743,259
Number of Sequences: 539616
Number of extensions: 10502460
Number of successful extensions: 22347
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 22347
Number of HSP's gapped (non-prelim): 5
length of query: 628
length of database: 191,569,459
effective HSP length: 124
effective length of query: 504
effective length of database: 124,657,075
effective search space: 62827165800
effective search space used: 62827165800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)