Query psy13892
Match_columns 628
No_of_seqs 170 out of 1417
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 23:06:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rw3_A POL polyprotein; RNA an 100.0 1.8E-43 6.2E-48 384.5 4.0 315 2-363 124-446 (455)
2 2zd1_B P51 RT; P51/P66, hetero 100.0 1.4E-35 4.7E-40 318.5 16.2 289 2-346 103-404 (428)
3 2zd1_A Reverse transcriptase/r 100.0 4.1E-34 1.4E-38 318.0 22.6 268 2-322 105-384 (557)
4 1mu2_A HIV-2 RT; HIV-2 reverse 100.0 7.2E-32 2.5E-36 299.8 15.3 267 2-322 103-381 (555)
5 3fsi_A RT, reverse transcripta 99.9 1.4E-24 4.9E-29 217.4 5.9 128 2-135 120-251 (255)
6 3oym_A PFV integrase, P42IN; p 98.7 2.4E-08 8.1E-13 106.0 7.1 79 529-619 32-110 (395)
7 3hst_B Protein RV2228C/MT2287; 98.6 3.3E-08 1.1E-12 88.7 6.5 115 257-387 3-129 (141)
8 2ehg_A Ribonuclease HI; RNAse 98.6 7E-08 2.4E-12 87.6 6.5 117 258-388 2-131 (149)
9 3u3g_D Ribonuclease H, RNAse H 98.5 1.1E-07 3.8E-12 85.0 5.4 119 257-387 3-133 (140)
10 3nnq_A Integrase P46, N-termin 98.3 4.8E-07 1.6E-11 75.2 4.9 69 534-618 34-105 (114)
11 2kq2_A Ribonuclease H-related 98.3 1.8E-07 6.2E-12 84.5 1.2 119 255-387 4-133 (147)
12 2qkb_A Ribonuclease H1, HS-RNA 98.0 4.2E-06 1.4E-10 76.1 4.8 81 301-387 48-147 (154)
13 3p1g_A Xenotropic murine leuke 97.9 1.4E-05 4.8E-10 73.3 6.3 110 255-387 21-152 (165)
14 2e4l_A Ribonuclease HI, RNAse 97.7 2.9E-05 9.9E-10 70.8 5.6 111 257-387 6-141 (158)
15 3f9k_A Integrase; protein-prot 97.7 7.4E-06 2.5E-10 78.5 1.6 43 576-620 11-53 (210)
16 3h08_A RNH (ribonuclease H); R 97.7 7.9E-05 2.7E-09 67.0 8.1 72 256-347 3-80 (146)
17 3qio_A GAG-POL polyprotein; RN 97.7 2.8E-05 9.5E-10 70.2 4.9 107 256-387 11-143 (150)
18 1jl1_A Ribonuclease HI; RNAse 97.7 3.2E-05 1.1E-09 70.3 5.1 111 257-387 4-139 (155)
19 2lsn_A Reverse transcriptase; 97.6 0.00016 5.4E-09 66.2 8.5 111 253-378 3-139 (165)
20 1ril_A Ribonuclease H; hydrola 97.4 3.7E-05 1.3E-09 70.7 1.7 111 257-387 8-144 (166)
21 3hph_A Integrase, IN; protein- 97.4 3.2E-05 1.1E-09 74.5 0.9 38 577-616 11-48 (219)
22 1mu2_A HIV-2 RT; HIV-2 reverse 96.7 0.0008 2.7E-08 74.2 3.7 105 256-386 435-552 (555)
23 4htu_A Ribonuclease H, RNAse H 96.6 0.0016 5.4E-08 56.9 4.5 72 258-348 6-83 (134)
24 1k6y_A Integrase; HIV-1, domai 96.5 0.00035 1.2E-08 66.7 -0.5 43 569-618 8-50 (212)
25 1zbf_A Ribonuclease H-related 96.5 0.0015 5.3E-08 57.9 3.4 73 257-348 11-89 (142)
26 3kyl_A Telomerase reverse tran 83.6 1.4 4.8E-05 46.5 6.0 101 49-161 303-403 (596)
27 2zd1_A Reverse transcriptase/r 47.3 7.2 0.00025 42.5 2.1 105 256-386 438-555 (557)
28 1qys_A TOP7; alpha-beta, novel 22.6 93 0.0032 23.5 3.9 60 46-118 18-77 (106)
29 2vzc_A Alpha-parvin; membrane, 20.1 30 0.001 29.5 0.9 48 95-154 76-123 (131)
No 1
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=100.00 E-value=1.8e-43 Score=384.48 Aligned_cols=315 Identities=11% Similarity=0.015 Sum_probs=235.5
Q ss_pred cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892 2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ 81 (628)
Q Consensus 2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~ 81 (628)
.++++++|+++|||||+|+|+|+++|+|.|+.. ..++.|+|+|+|||||+++||++||++|+.++.++...+. .
T Consensus 124 ~~~~s~lDl~~~y~qi~l~~~d~~~taF~~~~p-----~~~~~g~y~~~~mpfGl~naP~~fq~~m~~~l~~~~~~~~-~ 197 (455)
T 1rw3_A 124 HQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDP-----EMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP-D 197 (455)
T ss_dssp CCEEEEEEBTTGGGGSBBCSTTSGGGCEEECTT-----SSSCCEEEEESBCCSSCTTHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred CceEEecchhhhheeEeccccccceeEEeecCC-----CCCCCceEEEEecCCCCCCcHHHHHHHHHHHHHHhhhhCC-C
Confidence 579999999999999999999999999999743 3567889999999999999999999999999988742210 1
Q ss_pred hhhceeecccccccCChHHHHHHHHhHHHHHhhhcccc----ccccccCccccccCCCccccccccccceeeeeeccCCC
Q psy13892 82 LKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNL----REWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQED 157 (628)
Q Consensus 82 i~~~~YvDDili~s~t~ee~~~~~~~v~~~l~~~g~~l----~~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~~~d 157 (628)
....+|||||+|+++|.+||.+++++|+++|+++||.+ |+|...+.+|||+.|..++. ..++...
T Consensus 198 ~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~~gl~l~~~K~~f~~~~~~fLG~~i~~~gi-----------~~~~~kv 266 (455)
T 1rw3_A 198 LILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQR-----------WLTEARK 266 (455)
T ss_dssp CEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCGGGCCCSBSSCEETTEEESSSEE-----------CCCTTCC
T ss_pred ceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHHcCCccCccchhhhccceeEeeeeccCCee-----------EEChhHh
Confidence 22368999999999999999999999999999999998 56766777777655554432 2222111
Q ss_pred eEEEeecccccccchhHHHHHHhHhhhcccCCCchhHHHHHHHHHHHHHh-cCCCCCccCChhhHHHHHHHHHhccccCc
Q psy13892 158 TLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWI-QKKEWDDELDSKDKEKFLEIVDSMNFVSN 236 (628)
Q Consensus 158 ~~~~~~~~~~~~~~~tkR~~~s~~~~~~dplG~~~p~~~~~k~ll~~l~~-~~~~Wd~~i~~e~~~~~~~~~~~l~~~~~ 236 (628)
.... ..+.+.|++++.+++|.+-....++..+...++.+.+.+.+ ..+.|++ +++++|+++++.+.+.+.
T Consensus 267 ~~i~-----~~~~p~t~k~l~~flG~~~y~r~fi~~~~~~~~pL~~llkk~~~~~W~~----~~~~af~~lK~~l~~~pv 337 (455)
T 1rw3_A 267 ETVM-----GQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGP----DQQKAYQEIKQALLTAPA 337 (455)
T ss_dssp CCCC-----CCCTTTHHHHHHHTTTTTCCCSSCCCCCGGGCCTTCC--------CCCC----CCSSSCCHHHHHTCSSCC
T ss_pred hhhc-----cCCCCCCHHHhhhhcccchHHHHHHhhhhhhcccHHHHhcCCCCcCchH----HHHHHHHHHHHHhhcCcc
Confidence 1111 22346789999999876433333333333222222222211 2577764 577889999999999877
Q ss_pred cccceeecCCCCCCCCCcceeEEEeeccccccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHH
Q psy13892 237 IPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYR 316 (628)
Q Consensus 237 ~~~pr~~~~~~~~~~~~~~~~l~vftDAS~~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~ 316 (628)
+..|+. ..+++++||||+.|+|||++|. .+|..++++++||+...++++|+++++||+|+++|++
T Consensus 338 L~~p~~------------~~~~~l~~DAS~~~~gavL~q~---~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~ 402 (455)
T 1rw3_A 338 LGLPDL------------TKPFELFVDEKQGYAKGVLTQK---LGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK 402 (455)
T ss_dssp SCCSSS------------CCTTSCEEEEEECSSSBEECCB---CTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHH
T ss_pred cccCCC------------CCcEEEEEeccCCcceeEEEEe---cCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHH
Confidence 776654 3458999999999999999864 4677889999999999999999999999999999999
Q ss_pred HHHHHHhhccccceeEEEEecchhhhHhhhcCC-c--cChhHHhHHHHHH
Q psy13892 317 SLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNK-V--LPTFVNNRVKEIK 363 (628)
Q Consensus 317 ~~~~~~~~~~~~~~~~~i~tDs~~~l~~l~~~~-~--~~~~~~~r~~~i~ 363 (628)
.+++++ .+.+++|+|||. +++|++++. + ....+.+|...++
T Consensus 403 ~~~~yl-----~g~~~~v~tDh~-~~~~l~~~~~~~~~~~Rl~rW~~~L~ 446 (455)
T 1rw3_A 403 DAGKLT-----MGQPLVIKAPHA-VEALVKQPPDRWLSNARMTHYQALLL 446 (455)
T ss_dssp HHHGGG-----CSSCEEEECSSC-TTTTSSSTTTTTCCCCCCSCCCCCCC
T ss_pred HHHHHc-----CCCcEEEEecCh-HHHHhCCCccccccchHHHHHHHHhC
Confidence 888876 457899999998 999998773 2 3444555544443
No 2
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=100.00 E-value=1.4e-35 Score=318.45 Aligned_cols=289 Identities=11% Similarity=0.048 Sum_probs=204.1
Q ss_pred cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892 2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ 81 (628)
Q Consensus 2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~ 81 (628)
.++++++|+++|||||+|+|+|+++|||.|+..+ ..++.|.|+|+|||||+++||++||++|+.++.++.+.+. .
T Consensus 103 ~~~~s~lDl~~gy~qI~l~~~d~~~taF~~p~~~----~~t~~g~y~~~vmPfGl~nsPa~fq~~m~~il~~~~~~~~-~ 177 (428)
T 2zd1_B 103 KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSIN----NETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNP-D 177 (428)
T ss_dssp SSEEEEEECGGGGGGSBCCTTTGGGGCEEECCGG----GCSCCEEEEESBCCTTCTHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred cceEEEeeccCceeeEEcCccccceeEEEeecCC----CCCCCceEEEEeeCCCCcchHHHHHHHHHHHHHHHhhcCC-C
Confidence 5789999999999999999999999999997542 2467789999999999999999999999999998865431 1
Q ss_pred hhhceeecccccccCC-hHHHHHHHHhHHHHHhhhcccc----ccccccCccccccCCCccccccccccceeeeeeccCC
Q psy13892 82 LKNNIYMDNILCGVNN-EEEIENFVGTARKVFSDASLNL----REWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQE 156 (628)
Q Consensus 82 i~~~~YvDDili~s~t-~ee~~~~~~~v~~~l~~~g~~l----~~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~~~ 156 (628)
+...+|||||+|+|++ .+||..+++.|+++|+++||.+ |+| ..+.+|||+.|.+++...+
T Consensus 178 ~~v~vY~DDIlI~s~~~~~eh~~~l~~v~~~l~~~gL~l~~~Kc~~-~~~~~fLG~~i~~~~i~~~-------------- 242 (428)
T 2zd1_B 178 IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQK-EPPFLWMGYELHPDKWTVQ-------------- 242 (428)
T ss_dssp CEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC-------------CTTCCEEECGGGCCCC--------------
T ss_pred ceEEEEecceEEecCCcHHHHHHHHHHHHHHHHHhCCccChhHccc-cceEEEeccEecCCceEec--------------
Confidence 2236899999999995 7999999999999999999988 333 2334444444433321110
Q ss_pred CeEEEeecccccccchhHHHHHHhHhhhcccCCCchhHHHHHHHHHHHHHhcC------CCCCccCChhhHHHHHHHHHh
Q psy13892 157 DTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQK------KEWDDELDSKDKEKFLEIVDS 230 (628)
Q Consensus 157 d~~~~~~~~~~~~~~~tkR~~~s~~~~~~dplG~~~p~~~~~k~ll~~l~~~~------~~Wd~~i~~e~~~~~~~~~~~ 230 (628)
.. +. ....+.|++++.+++|.+--.-.++..+. ++.+ ..+.+.+ +.| +++++++|+++++.
T Consensus 243 -~~--ki---~~~~~~t~k~lr~flG~~~yyrrFi~~~s--~~pL-~~llkk~~~~~~~~~W----t~~~~~af~~lK~~ 309 (428)
T 2zd1_B 243 -PI--VL---PEKDSWTVNDIQKLVGKLNWASQIYPGIK--VRQL-SKLLRGTKALTEVIPL----TEEAELELAENREI 309 (428)
T ss_dssp -CC--CC---CCCSSEEHHHHHHHHHHHHHHTTTCTTCC--CHHH-HHTTCSCCCTTCEECC----CHHHHHHHHHHHHH
T ss_pred -cc--cc---ccccccCHHHHHHHhhhHHHHHHhcCCcc--HHHH-HHHHccCCCCCCeecC----CHHHHHHHHHHHHH
Confidence 00 11 22234467777777654321112222222 2222 2233332 566 47899999999999
Q ss_pred ccccCccccceeecCCCCCCCCCcceeEEEeeccccc-cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHH
Q psy13892 231 MNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSY-SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELL 309 (628)
Q Consensus 231 l~~~~~~~~pr~~~~~~~~~~~~~~~~l~vftDAS~~-g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELl 309 (628)
+.+.+.+..|.. +.++.++||||+. +||+|++| ++| .+++|++.. ++++|+++++|++
T Consensus 310 L~~~p~l~~pd~------------~~~~~l~~das~~g~~g~vl~q----~~~----~~~~s~~~~-~~~~y~~~~~e~l 368 (428)
T 2zd1_B 310 LKEPVHGVYYDP------------SKDLIAEIQKQGQGQWTYQIYQ----EPF----KNLKTGKYA-RMRGAHTNDVKQL 368 (428)
T ss_dssp TTSCCTTCCCCT------------TSCCEEEEEEEETTEEEEEEES----STT----CEEEEEEEE-CCSSCTTCHHHHH
T ss_pred HhcchhccccCC------------CCCEEEEEecCCCCcEEEEEec----CCC----ceeeecccc-hhhhcccchHHHH
Confidence 999866665543 5579999999995 67999884 333 256777665 8899999999999
Q ss_pred H-HHHHHHHHHHHHhhccccceeEEEEecchhhhHhhh
Q psy13892 310 G-ALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLT 346 (628)
Q Consensus 310 A-i~~a~~~~~~~~~~~~~~~~~~~i~tDs~~~l~~l~ 346 (628)
| ++.|++.++.++ +|-.+..++++|||....+|..
T Consensus 369 a~vv~al~~~r~yl--~G~~~~~~i~~td~~~~~~~~~ 404 (428)
T 2zd1_B 369 TEAVQKITTESIVI--WGKTPKFKLPIQKETWETWWTE 404 (428)
T ss_dssp HHHHHHHHHHHHHH--HSSCCEEEESSCHHHHHHHHHH
T ss_pred HHHHHHhhccceEE--ECCCCcEECCccHHHHHHHHHh
Confidence 9 999999888876 3334456788999996555543
No 3
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=100.00 E-value=4.1e-34 Score=317.96 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=190.2
Q ss_pred cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892 2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ 81 (628)
Q Consensus 2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~ 81 (628)
.++++++|+++|||||+|+|+|+++|+|.|++.+ ..++.+.|+|+|||||+++||++||++|+.++.++.+.+. .
T Consensus 105 ~~~~s~lDl~~~y~qi~l~~~d~~~taF~~p~~~----~~t~~g~y~~~~mPfGl~nap~~fq~~m~~il~~~~~~~~-~ 179 (557)
T 2zd1_A 105 KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSIN----NETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFAAQNP-D 179 (557)
T ss_dssp CSEEEEEECTTGGGGSBCCTTTGGGGCEEECCGG----GCSCCEEEEESBCCTTCTTHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred CCeeEEehhhhhhheeEcCccccceeEEEeecCC----CCCCceEEEEEeeCCCCCCHHHHHHHHHHHHHHHhhhcCC-C
Confidence 5799999999999999999999999999996543 2567889999999999999999999999999998865431 1
Q ss_pred hhhceeecccccccC-ChHHHHHHHHhHHHHHhhhccccc----cccccCccccccCCCccccccccccceeeeeeccCC
Q psy13892 82 LKNNIYMDNILCGVN-NEEEIENFVGTARKVFSDASLNLR----EWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQE 156 (628)
Q Consensus 82 i~~~~YvDDili~s~-t~ee~~~~~~~v~~~l~~~g~~l~----~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~~~ 156 (628)
+...+|||||+|+++ +.+||.+++++|+++|+++||.+. .| ..+ .++||+.+...+
T Consensus 180 ~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~~~Kc~f-~~~------------------~~fLG~~i~~~g 240 (557)
T 2zd1_A 180 IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQK-EPP------------------FLWMGYELHPDK 240 (557)
T ss_dssp EEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHTTTCCCCCSCCSC-CSS------------------EEETTEEECSSC
T ss_pred ceEEEEecCEEEecCchHHHHHHHHHHHHHHHHHcCCccChhhcCC-CCc------------------eEEeeEEEccCc
Confidence 223689999999999 599999999999999999999883 33 223 445666654432
Q ss_pred CeEEEeecccccccchhHHHHHHhHhhhcccCCCchhHHHHHHHHHHHHHh-----cCCCCCccCChhhHHHHHHHHHhc
Q psy13892 157 DTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWI-----QKKEWDDELDSKDKEKFLEIVDSM 231 (628)
Q Consensus 157 d~~~~~~~~~~~~~~~tkR~~~s~~~~~~dplG~~~p~~~~~k~ll~~l~~-----~~~~Wd~~i~~e~~~~~~~~~~~l 231 (628)
+.+.....+.....|++++.+++|.+--.-.++..+. .+.+.+.|.+ ..+.| +++++++|+++++.|
T Consensus 241 --i~~~~~k~~~~~~~t~k~lr~flG~~~~yrrfi~~~~--~~pl~~ll~~~~~~~~~~~W----t~~~~~af~~lK~~L 312 (557)
T 2zd1_A 241 --WTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIK--VRQLSKLLRGTKALTEVIPL----TEEAELELAENREIL 312 (557)
T ss_dssp --EEESCCCCCCCSCEEHHHHHHHHHHHHHHTTTSTTCC--CHHHHGGGTTCCCTTCEECC----CHHHHHHHHHHHHHT
T ss_pred --EEEcceecccccCCCHHHHHHHhhHHHhhhhhccchh--HHHHHHHhcccCCCCCceec----CHHHHHHHHHHHHHH
Confidence 2222111122333477777777764211111221111 1222222221 23566 478999999999999
Q ss_pred cccCccccceeecCCCCCCCCCcceeEEEeecccccc-ceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHH
Q psy13892 232 NFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYS-YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLG 310 (628)
Q Consensus 232 ~~~~~~~~pr~~~~~~~~~~~~~~~~l~vftDAS~~g-~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlA 310 (628)
.+.+.+..|.. ..+|.++||||+.| ||+|+.|. +++...+..+ ..+++|+++++|++|
T Consensus 313 ~~~p~L~~pd~------------~~~~~l~~das~~g~~g~vl~q~---~~~~~~~~~~------~~~~~y~~~e~e~la 371 (557)
T 2zd1_A 313 KEPVHGVYYDP------------SKDLIAEIQKQGQGQWTYQIYQE---PFKNLKTGKY------ARMRGAHTNDVKQLT 371 (557)
T ss_dssp SSCCCBCCCCT------------TSCCEEEEEEEETTEEEEEEEEE---TTEEEEEEEE------ECCSCSEECHHHHHH
T ss_pred hCccceeecCC------------CCCEEEEEecCCCCcEEEEEecC---CCceeeeeec------ccccccCCChHHHHH
Confidence 99877766543 45699999999986 69999863 1211122222 247899999999999
Q ss_pred -HHHHHHHHHHHH
Q psy13892 311 -ALIAYRSLKFVK 322 (628)
Q Consensus 311 -i~~a~~~~~~~~ 322 (628)
++.+++.++.++
T Consensus 372 ~vv~~l~~~~~~l 384 (557)
T 2zd1_A 372 EAVQKITTESIVI 384 (557)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhhhhheEE
Confidence 888888766554
No 4
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.97 E-value=7.2e-32 Score=299.80 Aligned_cols=267 Identities=14% Similarity=0.088 Sum_probs=184.5
Q ss_pred cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892 2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ 81 (628)
Q Consensus 2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~ 81 (628)
.++++++|+++|||||+|+|+|+++|+|.|+..+ ..++.+.|+|+|||||+++||++||++|+.++.++.+.+. .
T Consensus 103 ~~~~s~lDl~~~y~qI~l~~~d~~~taF~~p~~~----~~~~~g~y~~~~mPfGl~napa~fq~~m~~il~~~~~~~~-~ 177 (555)
T 1mu2_A 103 KRRITVLDVGDAYFSIPLHEDFRPYTAFTLPSVN----NAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANK-D 177 (555)
T ss_dssp CSEEEEEECBSSGGGSBCCTTTGGGGCEEC-------------CEEEESBCCTTCTTHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred CceEEEehhHhcceEEEeccCceeeeEEEeecCC----CCCCceEEEEEEeCCCCCCcHHHHHHHHHHHHHHHHhhCC-C
Confidence 5789999999999999999999999999997432 2345679999999999999999999999999998865431 1
Q ss_pred hhhceeecccccccC-ChHHHHHHHHhHHHHHhhhccccccccccCccccccCCCccccccccccceeeeeeccCCCeEE
Q psy13892 82 LKNNIYMDNILCGVN-NEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLS 160 (628)
Q Consensus 82 i~~~~YvDDili~s~-t~ee~~~~~~~v~~~l~~~g~~l~~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~~~d~~~ 160 (628)
+...+|||||+|+|+ +.+||.+++++|+++|+++||.+..-++ +. ..+.++||+.+... .+.
T Consensus 178 ~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~~~K~----~~-----------~~~~~fLG~~i~~~--gi~ 240 (555)
T 1mu2_A 178 VIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKF----QK-----------DPPYHWMGYELWPT--KWK 240 (555)
T ss_dssp SEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHTTCBCCSTTE----EC-----------SSSEEETTEEECSS--EEE
T ss_pred cEEEEEecceEEecCCCHHHHHHHHHHHHHHHHHcCCccCHHHh----cc-----------CCceeEEeEEEeCC--cee
Confidence 223689999999999 7999999999999999999998842111 00 12455666655432 222
Q ss_pred EeecccccccchhHHHHHHhHhhh---cccCCCchhHHHHHHHHHHHHHh------cCCCCCccCChhhHHHHHHHHHhc
Q psy13892 161 LKFHYEYKQGIICKRLLLSVLASF---FDILGLWTPIIMSLKLLVQSAWI------QKKEWDDELDSKDKEKFLEIVDSM 231 (628)
Q Consensus 161 ~~~~~~~~~~~~tkR~~~s~~~~~---~dplG~~~p~~~~~k~ll~~l~~------~~~~Wd~~i~~e~~~~~~~~~~~l 231 (628)
..........+.|++++.+++|.+ ..+..-++ .+. +..+.+ .++.| +++++++|+++++.|
T Consensus 241 ~~~~ki~~i~~~t~k~lr~flG~~~~~rrfi~~~~-----~~p-L~~llk~~~~~~~~~~w----t~~~~~af~~lK~~L 310 (555)
T 1mu2_A 241 LQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIK-----TKH-LCRLISGKMTLTEEVQW----TELAEAELEENRIIL 310 (555)
T ss_dssp ECCCCCCCCSSCBHHHHHHHHHHHHHHHHHSTTCC-----CHH-HHTTSCSSSCTTCBCCC----CHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCHHHHHhHhhhhhhhhhccCccc-----hHH-HHHHhccCCCCCCcccC----CHHHHHHHHHHHHHH
Confidence 221111222355777777766542 11111111 111 122222 34667 478999999999999
Q ss_pred cccCccccceeecCCCCCCCCCcceeEEEeecccccc-ceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHH
Q psy13892 232 NFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYS-YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLG 310 (628)
Q Consensus 232 ~~~~~~~~pr~~~~~~~~~~~~~~~~l~vftDAS~~g-~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlA 310 (628)
.+.+.+..|.. ..+|.++||||..| +|||+.| +|....+.++|+. .+++..++|++|
T Consensus 311 ~~~p~L~~p~~------------~~~~~l~~das~~ga~g~vl~Q-----~~~~~~~~~~s~~-----~~~~~~~~~~la 368 (555)
T 1mu2_A 311 SQEQEGHYYQE------------EKELEATVQKDQDNQWTYKIHQ-----EEKILKVGKYAKV-----KNTHTNGIRLLA 368 (555)
T ss_dssp SCCEEEECBCT------------TSCCEEEEEECSSSCEEEEEEE-----TTEEEEEEEECCC-------CEECHHHHHH
T ss_pred hhCccccccCC------------CCCEEEEEecCCCCcEEEEEee-----CCcceeeeecccc-----ccccCCHHHHHH
Confidence 99876665543 45699999999995 9999985 4545555566543 467888899998
Q ss_pred -HHHHHHHHHHHH
Q psy13892 311 -ALIAYRSLKFVK 322 (628)
Q Consensus 311 -i~~a~~~~~~~~ 322 (628)
++.+++.+..++
T Consensus 369 ~~v~~l~~~~~~l 381 (555)
T 1mu2_A 369 QVVQKIGKEALVI 381 (555)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhchhheee
Confidence 788888766554
No 5
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=99.90 E-value=1.4e-24 Score=217.39 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=109.5
Q ss_pred cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892 2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ 81 (628)
Q Consensus 2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~ 81 (628)
.+|++++|+++|||||+|+++|+++|+|.|.+. ..++.+.|+|+|||||+++||++||++|+.++..+...+. .
T Consensus 120 ~~~~s~lDl~~~y~qI~l~~~d~~~taF~~~~~-----~~t~~g~y~~~~mPfGl~~sP~~fq~~m~~il~~~~~~~~-~ 193 (255)
T 3fsi_A 120 HQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDP-----EMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP-D 193 (255)
T ss_dssp CCEEEEEEBTTCGGGSBBCTTTGGGGCEECCCS-----SSCCSSEEEESBCCTTCTTHHHHHHHHHHHHTHHHHHHCT-T
T ss_pred CcEEEEccccceeEeeecCccccCceEEEecCC-----CCCccceEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhCc-C
Confidence 579999999999999999999999999999765 4677889999999999999999999999999988754311 1
Q ss_pred hhhceeecccccccCChHHHHHHHHhHHHHHhhhcccc----ccccccCccccccCCC
Q psy13892 82 LKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNL----REWASNYPSVLIGTLS 135 (628)
Q Consensus 82 i~~~~YvDDili~s~t~ee~~~~~~~v~~~l~~~g~~l----~~~~~~~~~~lg~~i~ 135 (628)
+...+|||||+|+++|.+||.++++.|+++|+++||.+ |+|...+.+|||..|.
T Consensus 194 ~~v~~Y~DDili~s~~~eeh~~~l~~v~~~L~~~gl~l~~~Kc~f~~~~~~fLG~~i~ 251 (255)
T 3fsi_A 194 LILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLK 251 (255)
T ss_dssp CEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCTTTCEEEESEEEETTEEEE
T ss_pred cEEEEEcCCeEEEeCCHHHHHHHHHHHHHHHHHCCeEECHHHhcccCCceEEEEEEEe
Confidence 22478999999999999999999999999999999998 5566666666644443
No 6
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ...
Probab=98.65 E-value=2.4e-08 Score=105.98 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=64.7
Q ss_pred ceecCCCcEEecCcccccCCCCCCCccEEecCCCchhhHHHHHHHHhccCCChhHHHHHHHhhcccccchhHHHHHhccC
Q psy13892 529 LELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSC 608 (628)
Q Consensus 529 ~~~d~~gll~~~~r~~~~~~~~~~~~pivlP~~~~l~~lii~~~H~~~gH~G~~~t~~~ir~~yww~~~~~~Vr~~v~~C 608 (628)
.|..++|+|++.+.- ...++|. ..+...|+..+|+ .||.|..+|...|++.||||+|+++|+++++.|
T Consensus 32 ~y~~~~g~ly~~~~~----------g~~~~~~-~~~~~~il~~~H~-~gH~g~~~~~~~l~~~~~~~~~~~~v~~~~~~C 99 (395)
T 3oym_A 32 TYFLEDGKVKVSRPE----------GVKIIPP-QSDRQKIVLQAHN-LAHTGREATLLKIANLYWWPNMRKDVVKQLGRC 99 (395)
T ss_dssp CEEEETTEEEEEETT----------EEEECCC-HHHHHHHHHHHHH-TTTCCHHHHHHHHHTTBCCTTHHHHHHHHHTTC
T ss_pred cEEEECCEEEEEcCC----------CcEEECC-HHHHHHHHHHHHh-cCCCCHHHHHHHHhCCeECCCHHHHHHHhCccC
Confidence 455558999875421 1235553 4568889999999 999999999999999999999999999999999
Q ss_pred ccccccccCCC
Q psy13892 609 VNCKRFRQGPY 619 (628)
Q Consensus 609 ~~Cqr~k~~~~ 619 (628)
..||+.+....
T Consensus 100 ~~C~~~k~~~~ 110 (395)
T 3oym_A 100 QQCLITNASNK 110 (395)
T ss_dssp HHHHHHSCCCS
T ss_pred hhhcccCCCCC
Confidence 99999887554
No 7
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.63 E-value=3.3e-08 Score=88.72 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=78.6
Q ss_pred eEEEeeccccc------cceeeEEEEEeecC-CCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccc
Q psy13892 257 ELHAFSDACSY------SYASVVYLRSVSHS-GDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINI 329 (628)
Q Consensus 257 ~l~vftDAS~~------g~Gavl~~~~~~~~-g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~ 329 (628)
.+.+|||+|.. |||+++. ..+ |.. . ...+.. . ...|.++.|+.|++.|++.+..+ ..
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~----~~~~~~~-~-~~~~~~-~---~~~tn~~aEl~A~~~aL~~a~~~------~~ 66 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVW----TADHSTV-L-AESKQA-I---GRATNNVAEYRGLIAGLDDAVKL------GA 66 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEE----ETTSCSE-E-EEEEEE-E---EEECHHHHHHHHHHHHHHHHHHH------TC
T ss_pred EEEEEEecCCCCCCCCcEEEEEEE----eCCCCcE-E-Eeeecc-C---CCCchHHHHHHHHHHHHHHHHHC------CC
Confidence 58899999865 7777765 222 321 1 111111 1 13467899999999999976543 34
Q ss_pred eeEEEEecchhhhHhhhcC-CccChhHHhHHHHHHHhc---CCcceEeecCCCC-CCCCCCCC
Q psy13892 330 DKCYLWIDNQCVIHWLTGN-KVLPTFVNNRVKEIKASV---FPIVYKYIPTDSN-PADLACRG 387 (628)
Q Consensus 330 ~~~~i~tDs~~~l~~l~~~-~~~~~~~~~r~~~i~~~~---~~~~i~hipg~~N-~AD~lSR~ 387 (628)
.++.|+|||+.++.++++. +.-...+...+.+|+++. ..+.|.|||++.| .||.|.|.
T Consensus 67 ~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~ 129 (141)
T 3hst_B 67 TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLAND 129 (141)
T ss_dssp SEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHH
T ss_pred ceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHH
Confidence 6899999999999999885 322333444445555443 3689999999999 49998774
No 8
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.56 E-value=7e-08 Score=87.57 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=76.5
Q ss_pred EEEeeccccc-------c-ceeeEEEEEeecCCCeeeeEeecccccCCC-CCCccchhhHHHHHHHHHHHHHHHhhcccc
Q psy13892 258 LHAFSDACSY-------S-YASVVYLRSVSHSGDIRTNIVFAKSRVAPT-NKPTLPRLELLGALIAYRSLKFVKNSLHIN 328 (628)
Q Consensus 258 l~vftDAS~~-------g-~Gavl~~~~~~~~g~~~~~~~~sks~~~~~-~~~si~~~ELlAi~~a~~~~~~~~~~~~~~ 328 (628)
+.+|||+|-. | ||++++ . +|... ..++.. ..+. ...|.++.|+.|++.|++.+... .
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~----~-~g~~~--~~~~~~-~~~~~~~~tnn~aEl~A~~~aL~~a~~~------g 67 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIY----L-DNRKI--EGYGLA-EKPFSINSTNNVAEYSGLICLMETMLRL------G 67 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEE----C-SSCEE--EEEEEC-SCTTCTTCCHHHHHHHHHHHHHHHHHHH------T
T ss_pred EEEEEeeccCCCCCChheEEEEEEE----E-CCEEE--EEeccc-cCCCCCCccHHHHHHHHHHHHHHHHHHc------C
Confidence 4689999876 4 487776 2 44321 122222 1221 25678899999999999976643 2
Q ss_pred ceeEEEEecchhhhHhhhcC-CccChhHHhHHHHHHHhcC--CcceEeecCCCCC-CCCCCCCC
Q psy13892 329 IDKCYLWIDNQCVIHWLTGN-KVLPTFVNNRVKEIKASVF--PIVYKYIPTDSNP-ADLACRGS 388 (628)
Q Consensus 329 ~~~~~i~tDs~~~l~~l~~~-~~~~~~~~~r~~~i~~~~~--~~~i~hipg~~N~-AD~lSR~~ 388 (628)
..++.|+|||+.++.++++. +.-.......+.++.++.. ++.|.||||+.|- ||.|.|..
T Consensus 68 ~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~~N~~AD~LA~~a 131 (149)
T 2ehg_A 68 ISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKEADRLSRVA 131 (149)
T ss_dssp CCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGGGCHHHHHHHHHH
T ss_pred CCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHHHHHH
Confidence 46899999999999999876 2111222222333332221 5999999999994 99998853
No 9
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.47 E-value=1.1e-07 Score=85.02 Aligned_cols=119 Identities=16% Similarity=0.198 Sum_probs=75.0
Q ss_pred eEEEeecccc------ccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccce
Q psy13892 257 ELHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINID 330 (628)
Q Consensus 257 ~l~vftDAS~------~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~ 330 (628)
.+.+|||+|- .|||+++. ..+|... .-.+.. .. ..|.++.|+.|++.|++.+...- ......
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~----~~~g~~~--~~~~~~-~~---~~tn~~aEl~A~~~aL~~a~~~~--~~~~~~ 70 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVIT----DEKGNTL--HESSAY-IG---ETTNNVAEYEALIRALEDLQMFG--DKLVDM 70 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEE----CTTSCEE--EEEEEE-EE---EECHHHHHHHHHHHHHHHHGGGG--GGGTTC
T ss_pred eEEEEEecCCCCCCCCcEEEEEEE----eCCCCEE--EEEEee-CC---CCchHHHHHHHHHHHHHHHHHcC--CCCCCc
Confidence 5889999986 47777765 2344321 111111 11 24678999999999999654321 001123
Q ss_pred eEEEEecchhhhHhhhcC-CccChhHHhHHHHHHH----hcCCcceEeecCCCCC-CCCCCCC
Q psy13892 331 KCYLWIDNQCVIHWLTGN-KVLPTFVNNRVKEIKA----SVFPIVYKYIPTDSNP-ADLACRG 387 (628)
Q Consensus 331 ~~~i~tDs~~~l~~l~~~-~~~~~~~~~r~~~i~~----~~~~~~i~hipg~~N~-AD~lSR~ 387 (628)
++.|+|||+.++.++++. +.-..-+...+.+|.+ ....+.|.|||++.|- ||.|.+.
T Consensus 71 ~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~ 133 (140)
T 3u3g_D 71 EVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNE 133 (140)
T ss_dssp EEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHH
T ss_pred eEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHH
Confidence 899999999999999985 2112222222333333 2347999999999994 9988653
No 10
>3nnq_A Integrase P46, N-terminal domain of moloney murine leukemia VIRU integrase; retroviral integrase, Zn finger; 2.69A {Moloney murine leukemia virus}
Probab=98.31 E-value=4.8e-07 Score=75.23 Aligned_cols=69 Identities=19% Similarity=0.376 Sum_probs=61.5
Q ss_pred CCcEEecCcccccCCCCCCCccEEecCCCchhhHHHHHHHHhccCCChhHHHHHHHhh---cccccchhHHHHHhccCcc
Q psy13892 534 EGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLD---YWITQGRSAVKQILKSCVN 610 (628)
Q Consensus 534 ~gll~~~~r~~~~~~~~~~~~pivlP~~~~l~~lii~~~H~~~gH~G~~~t~~~ir~~---yww~~~~~~Vr~~v~~C~~ 610 (628)
++.+...||+ ++| ..+...++...|... |.|..++...|++. ||+|+..+.++.++++|.+
T Consensus 34 ~~~w~~~Gk~-------------vlP--~~~~~eli~~lH~lT-HLg~~kl~~Ll~r~e~~~~i~~~~~~~~~Vt~sC~a 97 (114)
T 3nnq_A 34 KKYWVYQGKP-------------VMP--DQFTFELLDFLHQLT-HLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKA 97 (114)
T ss_dssp TTEEEETTEE-------------EEC--HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHCCSSEETTHHHHHHHHHHHCHH
T ss_pred CceeccCCCC-------------cCC--HHHHHHHHHHHHHHh-ccCHHHHHHHHHhhccceeeeCHHHHHHHHHHHHHH
Confidence 4566677887 999 678899999999955 99999999999886 9999999999999999999
Q ss_pred ccccccCC
Q psy13892 611 CKRFRQGP 618 (628)
Q Consensus 611 Cqr~k~~~ 618 (628)
|+++|+..
T Consensus 98 CaqvNa~~ 105 (114)
T 3nnq_A 98 CAQVNASK 105 (114)
T ss_dssp HHHHHCCC
T ss_pred HHHhCCcc
Confidence 99999754
No 11
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.25 E-value=1.8e-07 Score=84.52 Aligned_cols=119 Identities=19% Similarity=0.242 Sum_probs=74.4
Q ss_pred ceeEEEeecccc----ccceeeEEEEEeecCCCeeeeEeecccccCCC-CCCccchhhHHHHHHHHHHHHHHHhhccccc
Q psy13892 255 RYELHAFSDACS----YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPT-NKPTLPRLELLGALIAYRSLKFVKNSLHINI 329 (628)
Q Consensus 255 ~~~l~vftDAS~----~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~-~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~ 329 (628)
...+.+|||+|. .|||++++. +|.. ..+...+...+. ...|.++.||.|++.|++.+... + .
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~-----~g~~--~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~----~--~ 70 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVK-----DGKV--HYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL----G--V 70 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEE-----TTEE--EEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH----T--C
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEE-----CCEE--EEEEeccccccccccccHHHHHHHHHHHHHHHHHHC----C--C
Confidence 346889999987 578888762 3432 111110111121 13578899999999999965432 2 2
Q ss_pred eeEEEEecchhhhHhhhcC-CccChhHHhHHHHHHHhcCCcceEeecCCC----C-CCCCCCCC
Q psy13892 330 DKCYLWIDNQCVIHWLTGN-KVLPTFVNNRVKEIKASVFPIVYKYIPTDS----N-PADLACRG 387 (628)
Q Consensus 330 ~~~~i~tDs~~~l~~l~~~-~~~~~~~~~r~~~i~~~~~~~~i~hipg~~----N-~AD~lSR~ 387 (628)
++.|+|||+.+..|+.+. +.-..........++++...+.|.||||.. | -||.|.|.
T Consensus 71 -~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~ 133 (147)
T 2kq2_A 71 -KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKS 133 (147)
T ss_dssp -CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHH
T ss_pred -eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHH
Confidence 889999999888898875 221111111122234443468999999976 6 38988775
No 12
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.00 E-value=4.2e-06 Score=76.14 Aligned_cols=81 Identities=25% Similarity=0.191 Sum_probs=53.3
Q ss_pred CccchhhHHHHHHHHHHHHHHHhhccccceeEEEEecchhhhHhhhcC------CccC----hhHH--hHHHHHHHhcC-
Q psy13892 301 PTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGN------KVLP----TFVN--NRVKEIKASVF- 367 (628)
Q Consensus 301 ~si~~~ELlAi~~a~~~~~~~~~~~~~~~~~~~i~tDs~~~l~~l~~~------~~~~----~~~~--~r~~~i~~~~~- 367 (628)
.|..+.||.|++.|++.+.. ....++.|+|||+.++.-|+.- +.|. ..+. .-+.+|.++..
T Consensus 48 ~tn~~aEl~A~~~aL~~~~~------~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~ 121 (154)
T 2qkb_A 48 QTNQRAEIHAACKAIEQAKT------QNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG 121 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHHH------TTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHh------CCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcC
Confidence 57889999999999997653 2357899999999887655541 1111 1111 12334433332
Q ss_pred -CcceEeecCCC----C-CCCCCCCC
Q psy13892 368 -PIVYKYIPTDS----N-PADLACRG 387 (628)
Q Consensus 368 -~~~i~hipg~~----N-~AD~lSR~ 387 (628)
.+.|.||||.. | .||.|.|.
T Consensus 122 ~~v~~~~V~~H~g~~~N~~AD~LA~~ 147 (154)
T 2qkb_A 122 MDIQWMHVPGHSGFIGNEEADRLARE 147 (154)
T ss_dssp CEEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCCHhHHHHHHHHHH
Confidence 48999999976 7 48887663
No 13
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=97.89 E-value=1.4e-05 Score=73.31 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=68.0
Q ss_pred ceeEEEeeccccc------cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhcccc
Q psy13892 255 RYELHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHIN 328 (628)
Q Consensus 255 ~~~l~vftDAS~~------g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~ 328 (628)
...+.+|||+|.. |||++++. +|.. .. .+ ... ...|.++.||.|++.|++.+ .
T Consensus 21 ~~~i~iytDGs~~~npG~~g~G~vi~~-----~~~~--~~-~~--~~~--~~~Tnn~aEl~Ai~~AL~~~---------~ 79 (165)
T 3p1g_A 21 DADYTWYTDGSSFLQEGQRRAGAAVTT-----ETEV--IW-AR--ALP--AGTSAQRAELIALTQALKMA---------E 79 (165)
T ss_dssp TCSEEEEEEEEEEEETTEEEEEEEEEC-----SSCE--EE-EE--EEC--TTCCHHHHHHHHHHHHHHHT---------B
T ss_pred CCCEEEEEEcccCCCCCceEEEEEEEE-----CCEE--EE-Ee--cCC--CCCcHHHHHHHHHHHHHHHc---------c
Confidence 3469999999985 57777652 3322 11 11 111 23478899999999999955 2
Q ss_pred ceeEEEEecchhhhHhh--hcC-CccChhHHhHHHHH-HHh--cCCcceEeecCCC---------CC-CCCCCCC
Q psy13892 329 IDKCYLWIDNQCVIHWL--TGN-KVLPTFVNNRVKEI-KAS--VFPIVYKYIPTDS---------NP-ADLACRG 387 (628)
Q Consensus 329 ~~~~~i~tDs~~~l~~l--~~~-~~~~~~~~~r~~~i-~~~--~~~~~i~hipg~~---------N~-AD~lSR~ 387 (628)
..++.|+|||+.++.-+ ++. +..... .-+.++ .++ ...+.|.||||.. |- ||.|-|.
T Consensus 80 ~~~v~I~tDS~~vi~~iw~~~~g~~v~n~--dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~ 152 (165)
T 3p1g_A 80 GKKLNVYTDSRYAFATAHVHSEGREIKNK--NEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAARE 152 (165)
T ss_dssp TSEEEEEECCHHHHHHHHSCCCSCCCSSH--HHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred CceEEEEEchHHHHhhhhcccCCCcccCH--HHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHH
Confidence 57899999998777543 322 211111 111222 222 1269999999998 53 8877664
No 14
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=97.73 E-value=2.9e-05 Score=70.83 Aligned_cols=111 Identities=24% Similarity=0.308 Sum_probs=67.3
Q ss_pred eEEEeeccccc------cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccce
Q psy13892 257 ELHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINID 330 (628)
Q Consensus 257 ~l~vftDAS~~------g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~ 330 (628)
.+.+|||+|.. |||+++.. +|. ...+ +.. . ...|.++.||.|++.|++.+. ...
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~-----~~~--~~~~-~~~-~---~~~tn~~aEl~A~~~AL~~~~--------~~~ 65 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNY-----KGH--TKEM-SDG-F---SLTTNNRMELLAPIVALEALK--------EPC 65 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEE-----TTE--EEEE-EEE-E---EEECHHHHHHHHHHHHHHTCS--------SCC
T ss_pred eEEEEEcccccCCCCcEEEEEEEEE-----CCE--EEEE-ecC-c---CCCccHHHHHHHHHHHHHHhc--------cCC
Confidence 58899999875 67777652 231 1111 111 1 124678999999999998532 127
Q ss_pred eEEEEecchhhhHhhhc--------C-C-ccChhHHhH--HHHHHHhcC--CcceEeecCC----CC-CCCCCCCC
Q psy13892 331 KCYLWIDNQCVIHWLTG--------N-K-VLPTFVNNR--VKEIKASVF--PIVYKYIPTD----SN-PADLACRG 387 (628)
Q Consensus 331 ~~~i~tDs~~~l~~l~~--------~-~-~~~~~~~~r--~~~i~~~~~--~~~i~hipg~----~N-~AD~lSR~ 387 (628)
++.|+|||+.++.-|+. . + .-...+.|. +.+|.++.. .+.|.||||. .| .||.|.|.
T Consensus 66 ~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~ 141 (158)
T 2e4l_A 66 KIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARA 141 (158)
T ss_dssp EEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchhHHHHHHHHHH
Confidence 89999999988875554 2 1 000111111 223333322 5899999987 46 38988775
No 15
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A
Probab=97.73 E-value=7.4e-06 Score=78.53 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=37.8
Q ss_pred ccCCChhHHHHHHHhhcccccchhHHHHHhccCccccccccCCCC
Q psy13892 576 CFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYK 620 (628)
Q Consensus 576 ~gH~G~~~t~~~ir~~yww~~~~~~Vr~~v~~C~~Cqr~k~~~~~ 620 (628)
.+|.|..+|...|+++||||+|. |+++|++|..||+.+..+..
T Consensus 11 ~~H~~~h~~~~~l~~~~~wp~~~--~~~~v~~C~~Cq~~k~~~~~ 53 (210)
T 3f9k_A 11 EEHEKYHSNVKELSHKFGIPNLV--ARQIVNSCAQCQQKGEAIHG 53 (210)
T ss_dssp HHHHHHCCCHHHHHHHHCCCHHH--HHHHHHTCTTTTTCCCCCCC
T ss_pred HhHHHhccCHHHHHHhCCCChHH--HHHHHhcCHHHHccCCCCCC
Confidence 37888888999999999999998 89999999999999865543
No 16
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=97.71 E-value=7.9e-05 Score=66.95 Aligned_cols=72 Identities=14% Similarity=0.265 Sum_probs=47.8
Q ss_pred eeEEEeecccc------ccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccc
Q psy13892 256 YELHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINI 329 (628)
Q Consensus 256 ~~l~vftDAS~------~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~ 329 (628)
..+.+|||+|- .|||+++.. ++. ...+.. . . ..-|.++.||.|++.|++.+. ..
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~-----~~~--~~~~~~-~-~---~~~Tnn~aEl~A~~~AL~~~~--------~~ 62 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMY-----GSS--RKEISG-Y-D---PATTNNRMELMAAIKGLEALK--------EP 62 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEE-----TTE--EEEEEE-E-E---EEECHHHHHHHHHHHHHHTCS--------SC
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEE-----CCe--eEEeec-C-C---CCCcHHHHHHHHHHHHHHhcC--------cc
Confidence 36899999994 467776652 221 111111 1 1 134677899999999998543 14
Q ss_pred eeEEEEecchhhhHhhhc
Q psy13892 330 DKCYLWIDNQCVIHWLTG 347 (628)
Q Consensus 330 ~~~~i~tDs~~~l~~l~~ 347 (628)
.++.|+|||+.++.-++.
T Consensus 63 ~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 63 ARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp CEEEEEESCHHHHHHHHS
T ss_pred CcEEEEeChHHHHHHHHH
Confidence 789999999988876654
No 17
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=97.70 E-value=2.8e-05 Score=70.22 Aligned_cols=107 Identities=17% Similarity=0.126 Sum_probs=66.3
Q ss_pred eeEEEeecccc------ccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccc
Q psy13892 256 YELHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINI 329 (628)
Q Consensus 256 ~~l~vftDAS~------~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~ 329 (628)
..+.+|||+|- .|+|+++. ++.... + + ....|.++.||.|++.|++.. .
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~------~~~~~~--~-~------~~~~Tnn~aEl~A~i~AL~~~----------~ 65 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTN------RGRQKV--V-T------LTDTTNQKTELQAIYLALQDS----------G 65 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEET------TSCEEE--E-E------ESSCCHHHHHHHHHHHHHHHS----------C
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEE------cCCEEE--E-e------CCCCCHHHHHHHHHHHHHHhC----------C
Confidence 45899999995 46666553 222211 1 1 124578899999999999841 3
Q ss_pred eeEEEEecchhhhHhhhcC------CccC----hhHHhH--HHHHHH-h--cCCcceEeecCCC----CC-CCCCCCC
Q psy13892 330 DKCYLWIDNQCVIHWLTGN------KVLP----TFVNNR--VKEIKA-S--VFPIVYKYIPTDS----NP-ADLACRG 387 (628)
Q Consensus 330 ~~~~i~tDs~~~l~~l~~~------~~~~----~~~~~r--~~~i~~-~--~~~~~i~hipg~~----N~-AD~lSR~ 387 (628)
.++.|+|||+.++.-++.- +.|. ..+.|+ +.++.+ + ...+.|.||||.. |- ||.|.|.
T Consensus 66 ~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~ 143 (150)
T 3qio_A 66 LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 143 (150)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHT
T ss_pred CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHH
Confidence 7899999999888765541 1111 112221 222222 1 2268999999998 84 9988775
No 18
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=97.69 E-value=3.2e-05 Score=70.35 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=68.2
Q ss_pred eEEEeeccccc------cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccce
Q psy13892 257 ELHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINID 330 (628)
Q Consensus 257 ~l~vftDAS~~------g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~ 330 (628)
.+.+|||+|.. |||+++.. ++.. ..+. .. . ...|.++.||.|++.|++.+.. ..
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~-----~~~~--~~~~-~~-~---~~~tn~~aEl~A~~~aL~~~~~--------~~ 63 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRY-----RGRE--KTFS-AG-Y---TRTTNNRMELMAAIVALEALKE--------HA 63 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEE-----TTEE--EEEE-EE-E---EEECHHHHHHHHHHHHHHTCCS--------CC
T ss_pred eEEEEEccccCCCCCceEEEEEEEE-----CCeE--EEEe-cC-C---CCCcHHHHHHHHHHHHHHHhCc--------CC
Confidence 47899999874 57776652 2211 1111 11 1 1246789999999999984321 26
Q ss_pred eEEEEecchhhhHhhhcC------Ccc----ChhHHh--HHHHHHHhcC--CcceEeecCC----CC-CCCCCCCC
Q psy13892 331 KCYLWIDNQCVIHWLTGN------KVL----PTFVNN--RVKEIKASVF--PIVYKYIPTD----SN-PADLACRG 387 (628)
Q Consensus 331 ~~~i~tDs~~~l~~l~~~------~~~----~~~~~~--r~~~i~~~~~--~~~i~hipg~----~N-~AD~lSR~ 387 (628)
++.|+|||+.++.-++.- +.| ...+.| -+.+|.+... .+.|.||||. .| .||.|.|.
T Consensus 64 ~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~ 139 (155)
T 1jl1_A 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARA 139 (155)
T ss_dssp EEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHH
T ss_pred cEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHHHHHHHHHHHH
Confidence 899999999999777651 111 111111 1233444332 5899999987 46 38988875
No 19
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=97.60 E-value=0.00016 Score=66.15 Aligned_cols=111 Identities=9% Similarity=-0.070 Sum_probs=56.3
Q ss_pred CcceeEEEeecccc-----------ccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHH
Q psy13892 253 SVRYELHAFSDACS-----------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFV 321 (628)
Q Consensus 253 ~~~~~l~vftDAS~-----------~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~ 321 (628)
.+..++++|||+|- -|||+++.. .+.+... ..+- ..+ +-++-|+.|.+.|+..+...
T Consensus 3 m~~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~----~~~~~~~--~~~~--~~~----tnn~te~~Aei~Al~~al~~ 70 (165)
T 2lsn_A 3 MGQYEGVFYTDGSAIKSPDPTKSNNAGMGIVHAT----YKPEYQV--LNQW--SIP----LGNHTAQMAEIAAVEFACKK 70 (165)
T ss_dssp TCCCSEEEEEEEEEEECSSCTTCEEEEEEEEEEC----CSSSCCE--EEEE--EEE----ESSCCHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCCCCCCCCCCcEEEEEEEEE----CCCccEE--eccc--cCC----chHHHHHHHHHHHHHHHHHH
Confidence 45678999999994 467776541 1111111 1110 011 22345666666666543321
Q ss_pred HhhccccceeEEEEecchhhhHhhhc--------C--CccChhHH-----hHHHHHHHhcCCcceEeecCCC
Q psy13892 322 KNSLHINIDKCYLWIDNQCVIHWLTG--------N--KVLPTFVN-----NRVKEIKASVFPIVYKYIPTDS 378 (628)
Q Consensus 322 ~~~~~~~~~~~~i~tDs~~~l~~l~~--------~--~~~~~~~~-----~r~~~i~~~~~~~~i~hipg~~ 378 (628)
... ...++.|+|||+-++.-++. . ..-...+. .++.++......+.|.||+|..
T Consensus 71 al~---~~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~ 139 (165)
T 2lsn_A 71 ALK---IPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQ 139 (165)
T ss_dssp HHH---SSSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSS
T ss_pred Hhc---CCCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 111 23579999999987754432 1 01111122 2222222222369999999986
No 20
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=97.42 E-value=3.7e-05 Score=70.75 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=66.4
Q ss_pred eEEEeeccccc------cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccce
Q psy13892 257 ELHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINID 330 (628)
Q Consensus 257 ~l~vftDAS~~------g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~ 330 (628)
.+.+|||+|.. |||+++. ..++.. .+ +.. ....|.++.||.|++.|++.+.. ..
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~----~~~~~~---~~-~~~----~~~~Tnn~aEl~Ai~~AL~~~~~--------~~ 67 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLR----FHAHEK---LL-SGG----EACTTNNRMELKAAIEGLKALKE--------PC 67 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEEC----BTTBCC---EE-CCE----EEEECHHHHHHHHHHHHHHSCCS--------CC
T ss_pred cEEEEECccccCCCCCEEEEEEEE----ECCEEE---EE-ecC----CCCCcHHHHHHHHHHHHHHHhcc--------CC
Confidence 57899999875 5666654 122211 11 111 12356789999999999984321 24
Q ss_pred eEEEEecchhhhHhhhcC-------CccC----hhHHh--HHHHHHHhcC--CcceEeecCC----CC-CCCCCCCC
Q psy13892 331 KCYLWIDNQCVIHWLTGN-------KVLP----TFVNN--RVKEIKASVF--PIVYKYIPTD----SN-PADLACRG 387 (628)
Q Consensus 331 ~~~i~tDs~~~l~~l~~~-------~~~~----~~~~~--r~~~i~~~~~--~~~i~hipg~----~N-~AD~lSR~ 387 (628)
++.|+|||+.++.-|++. +.|. ..+.| -+.+|.++.. .+.|.||||. .| .||.|.|.
T Consensus 68 ~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~ 144 (166)
T 1ril_A 68 EVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 144 (166)
T ss_dssp EEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHH
T ss_pred eEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCCCCchhHHHHHHHHHH
Confidence 899999999888755551 1111 11221 2233333322 5888999965 56 38988875
No 21
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=97.38 E-value=3.2e-05 Score=74.49 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=27.4
Q ss_pred cCCChhHHHHHHHhhcccccchhHHHHHhccCcccccccc
Q psy13892 577 FHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQ 616 (628)
Q Consensus 577 gH~G~~~t~~~ir~~yww~~~~~~Vr~~v~~C~~Cqr~k~ 616 (628)
+|.|...+...|+++||||+| +|+++|++|..||+.|.
T Consensus 11 ~H~~~h~~~~~l~~~~~~p~~--~~~~~v~~C~~Cq~~k~ 48 (219)
T 3hph_A 11 EHNKWHQDAVSLHLEFGIPRT--AAEDIVQQCDVCQENKM 48 (219)
T ss_dssp HHHHHCCCHHHHHHHSCCCHH--HHHHHHTTCTTC-----
T ss_pred HHHHHhcCHHHHHHhCCCCHH--HHHHHHHcCHHHHcCCC
Confidence 344445556778999999999 89999999999999986
No 22
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=96.67 E-value=0.0008 Score=74.22 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=66.9
Q ss_pred eeEEEeeccccc------cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccc
Q psy13892 256 YELHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINI 329 (628)
Q Consensus 256 ~~l~vftDAS~~------g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~ 329 (628)
..+.+|||+|.. |+|+++. .|..... . ...-|-++.|+.|++.|++. ..
T Consensus 435 ~~~~iytDGs~~~n~g~~g~G~v~~------~~~~~~~-----~----~~~~TNn~aEl~A~i~aL~~----------~~ 489 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVTD------RGKDKVK-----K----LEQTTNQQAELEAFAMALTD----------SG 489 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEET------TSCEEEE-----E----ESSCCHHHHHHHHHHHHHHT----------SC
T ss_pred CceEEEEcccccCCCCCceEEEEEE------eCCEeec-----c----CCCCCHHHHHHHHHHHHHHc----------CC
Confidence 458999999853 4555543 1221111 0 12356789999999999984 35
Q ss_pred eeEEEEecchhhhHhhhcCC-ccChhHHhHH-HHHHHhcCCcceEeecCCC----CC-CCCCCC
Q psy13892 330 DKCYLWIDNQCVIHWLTGNK-VLPTFVNNRV-KEIKASVFPIVYKYIPTDS----NP-ADLACR 386 (628)
Q Consensus 330 ~~~~i~tDs~~~l~~l~~~~-~~~~~~~~r~-~~i~~~~~~~~i~hipg~~----N~-AD~lSR 386 (628)
.++.|+|||+.++..+++-+ .-..-+.+++ ..+.. ...+.+.||||.. |- ||.|.+
T Consensus 490 ~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~ 552 (555)
T 1mu2_A 490 PKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQEVDHLVS 552 (555)
T ss_dssp SEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHHHHHHHHH
T ss_pred CeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHHHHHHHHH
Confidence 78999999999999998641 1112222222 22222 2358999999965 63 787754
No 23
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=96.63 E-value=0.0016 Score=56.87 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=48.9
Q ss_pred EEEeecccc------ccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhcccccee
Q psy13892 258 LHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDK 331 (628)
Q Consensus 258 l~vftDAS~------~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~~ 331 (628)
..+|||+|. .|||+|+. .+|.... ... . ...-|-++.|++|++.|++.+... ..+
T Consensus 6 ~~iytDGac~GNPGp~G~ggV~~-----~~g~~~~--~~g--~---~~~tTNN~aEl~A~i~aL~~l~~~-------~~~ 66 (134)
T 4htu_A 6 ESLSVDVGSQGNPGIVEYKGVDT-----KTGEVLF--ERE--P---IPIGTNNMGEFLAIVHGLRYLKER-------NSR 66 (134)
T ss_dssp SSEEEEEEEETTTEEEEEEEEET-----TTCCEEE--EEE--E---EEEECHHHHHHHHHHHHHHHHHHT-------TCC
T ss_pred eEEEEeeccCCCCCCeEEEEEEE-----ECCEEEE--Eec--C---CCCCchHHHHHHHHHHHHHHHHhC-------CCC
Confidence 468899986 46777764 2343221 111 1 123477899999999999976542 123
Q ss_pred EEEEecchhhhHhhhcC
Q psy13892 332 CYLWIDNQCVIHWLTGN 348 (628)
Q Consensus 332 ~~i~tDs~~~l~~l~~~ 348 (628)
+.|+|||+.++.|+++.
T Consensus 67 v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 67 KPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp CCEEESCHHHHHHHHHT
T ss_pred EEEEcchHHHHHHHHcC
Confidence 79999999999999864
No 24
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A
Probab=96.51 E-value=0.00035 Score=66.68 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHHHHhccCCChhHHHHHHHhhcccccchhHHHHHhccCccccccccCC
Q psy13892 569 VTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGP 618 (628)
Q Consensus 569 i~~~H~~~gH~G~~~t~~~ir~~yww~~~~~~Vr~~v~~C~~Cqr~k~~~ 618 (628)
+...|... |.+.. .|+++||||+| +++++++.|..||+.+..+
T Consensus 8 ~~~~H~~~-h~~~~----~l~~~~~~p~~--~~~~~~~~C~~C~~~~~~~ 50 (212)
T 1k6y_A 8 AQEEHEKY-HSNWR----AMASDFNLPPV--VAKEIVASCDKCQLKGEAM 50 (212)
T ss_dssp HHHHHHHH-CCCHH----HHHHHHTCCHH--HHHHHHHHCTTCCCC----
T ss_pred HHHhhHhh-hcCHH----HHHHhcCCCHH--HHHHHHhhChhhhccCCCC
Confidence 56678765 77765 56679999999 5899999999999987543
No 25
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=96.46 E-value=0.0015 Score=57.91 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=51.2
Q ss_pred eEEEeeccccc------cceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccce
Q psy13892 257 ELHAFSDACSY------SYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINID 330 (628)
Q Consensus 257 ~l~vftDAS~~------g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~ 330 (628)
.+.++||+|.. |||+++. .+|... . .+. . ....|-++.|++|++.|++.+... + .
T Consensus 11 ~~~iy~DGa~~gNpG~~G~G~vl~-----~~g~~~--~-~~~-~---~~~~TNN~aEl~A~i~aL~~~~~~----~--~- 71 (142)
T 1zbf_A 11 WESLSVDVGSQGNPGIVEYKGVDT-----KTGEVL--F-ERE-P---IPIGTNNMGEFLAIVHGLRYLKER----N--S- 71 (142)
T ss_dssp SSSEEEEEEECSSSEEEEEEEEET-----TTCCEE--E-ECC-C---EEEECHHHHHHHHHHHHHHHHHHT----T--C-
T ss_pred eEEEEEeeccCCCCCCeEEEEEEE-----eCCEEE--E-Eec-c---cCCcCcHHHHHHHHHHHHHHHHhC----C--C-
Confidence 46789999763 6777764 234221 1 111 1 123578899999999999976542 2 2
Q ss_pred eEEEEecchhhhHhhhcC
Q psy13892 331 KCYLWIDNQCVIHWLTGN 348 (628)
Q Consensus 331 ~~~i~tDs~~~l~~l~~~ 348 (628)
++.|+|||+.++.|+++.
T Consensus 72 ~v~i~tDS~~vi~w~~~~ 89 (142)
T 1zbf_A 72 RKPIYSNSQTAIKWVKDK 89 (142)
T ss_dssp CCCEEESCHHHHHHHHHT
T ss_pred eEEEEEehHHHHHHHHcC
Confidence 899999999999999876
No 26
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=83.61 E-value=1.4 Score=46.50 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=64.2
Q ss_pred EeeccccCcCchHHHHHHHHHHHhhhcchhhhhhhhceeecccccccCChHHHHHHHHhHHHHHhhhccccccccccCcc
Q psy13892 49 HTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPS 128 (628)
Q Consensus 49 ~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~i~~~~YvDDili~s~t~ee~~~~~~~v~~~l~~~g~~l~~~~~~~~~ 128 (628)
-.-.|.|...||-+..-.+..+-..+...........-|.||.++.+.+.+++.+.++.+... + .+. .+++
T Consensus 303 ekGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Aerfl~~Lkg~----l-eLN----pEKT 373 (596)
T 3kyl_A 303 NHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLIKGV----Y-QVN----PTKT 373 (596)
T ss_dssp CSSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHHHHHHHHHHH----S-CEE----EEEE
T ss_pred CCcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHHHHHHHhhCc----c-eEC----chhc
Confidence 356899999999999988887765542221112233569999999999999988888754333 2 331 1111
Q ss_pred ccccCCCccccccccccceeeeeeccCCCeEEE
Q psy13892 129 VLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSL 161 (628)
Q Consensus 129 ~lg~~i~~~~~~~~~~~k~LG~~w~~~~d~~~~ 161 (628)
.. .. +.. ..+.....++|+.+|..+-.+..
T Consensus 374 rI-nF-~~~-~lp~~~fpwCGLLIDtkTLEI~k 403 (596)
T 3kyl_A 374 RT-NL-PTH-RHPQDEIPYCGKIFNLTTRQVRT 403 (596)
T ss_dssp EE-CC-TTS-SSCCSEEEETTEEEETTTCCEEE
T ss_pred ee-ec-ccc-cCCCceeeeeeEEEECCEEEEEe
Confidence 11 00 000 01336688999999987666554
No 27
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=47.35 E-value=7.2 Score=42.45 Aligned_cols=105 Identities=13% Similarity=0.146 Sum_probs=69.3
Q ss_pred eeEEEeecccc------ccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhccccc
Q psy13892 256 YELHAFSDACS------YSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINI 329 (628)
Q Consensus 256 ~~l~vftDAS~------~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~ 329 (628)
..+.+|||+|. .|+|++++ +|..... ....-|.++.|+.|++.|++.+ .
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~------~~~~~~~---------~~~~~TNn~aEl~Ai~~aL~~~----------~ 492 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTN------KGRQKVV---------PLTNTTNQKTELQAIYLALQDS----------G 492 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEET------TSCEEEE---------EECSCCHHHHHHHHHHHHHHHS----------C
T ss_pred CCEEEEEccCCCCCCCceEEEEEEE------CCcEEEe---------cCCCCCHHHHHHHHHHHHHHhC----------C
Confidence 35899999985 35555543 2322211 1124578899999999999854 4
Q ss_pred eeEEEEecchhhhHhhhcC-CccChhHHhH-HHHHHHhcCCcceEeecCCC----CC-CCCCCC
Q psy13892 330 DKCYLWIDNQCVIHWLTGN-KVLPTFVNNR-VKEIKASVFPIVYKYIPTDS----NP-ADLACR 386 (628)
Q Consensus 330 ~~~~i~tDs~~~l~~l~~~-~~~~~~~~~r-~~~i~~~~~~~~i~hipg~~----N~-AD~lSR 386 (628)
.++.|+|||+.++..+++. ..-..-+.++ +..+.+. ..+.+.||||.. |- ||.|.+
T Consensus 493 ~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~-~~v~~~wV~~H~g~~~Ne~AD~LA~ 555 (557)
T 2zd1_A 493 LEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKK-EKVYLAWVPAHKGIGGNEQVDKLVS 555 (557)
T ss_dssp SEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHC-SEEEEEECCSSSCCTTCCGGGGCC-
T ss_pred CcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcC-CCEEEEEcCCCCCChhHHHHHHHHh
Confidence 6899999999999999875 2212222233 2233332 369999999965 85 999876
No 28
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.62 E-value=93 Score=23.45 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=43.7
Q ss_pred EEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhhhhhceeecccccccCChHHHHHHHHhHHHHHhhhccc
Q psy13892 46 VLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLN 118 (628)
Q Consensus 46 ~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~i~~~~YvDDili~s~t~ee~~~~~~~v~~~l~~~g~~ 118 (628)
.|.|++- .-+.+|++++.++.-.....++.+ .|-|.+++..|++++..-+...|.+.|.+
T Consensus 18 dytytvt------teselqkvlnelmdyikkqgakrv-------risitartkkeaekfaailikvfaelgyn 77 (106)
T 1qys_A 18 DYTYTVT------TESELQKVLNELMDYIKKQGAKRV-------RISITARTKKEAEKFAAILIKVFAELGYN 77 (106)
T ss_dssp EEEEEES------SSSHHHHHHHHHHHHHHHHCCSEE-------EEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEe------eHHHHHHHHHHHHHHHHhcCCcEE-------EEEEEecchhHHHHHHHHHHHHHHHhCCc
Confidence 5666653 235788998888765544333333 25678999999999999999999998874
No 29
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=20.10 E-value=30 Score=29.48 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=37.3
Q ss_pred cCChHHHHHHHHhHHHHHhhhccccccccccCccccccCCCccccccccccceeeeeecc
Q psy13892 95 VNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDT 154 (628)
Q Consensus 95 s~t~ee~~~~~~~v~~~l~~~g~~l~~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~ 154 (628)
..+..+..+.+..+++.+++.|+.+ ..|..++...+....+||+.|..
T Consensus 76 p~~r~~kieNv~~aL~~lk~~gi~l------------~~I~~~DIvdGn~kliLgLiW~l 123 (131)
T 2vzc_A 76 PDSFEQKVLNVSFAFELMQDGGLEK------------PKPRPEDIVNCDLKSTLRVLYNL 123 (131)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCCC------------CSSCHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCc------------CCCCHHHhhCCCHHhHHHHHHHH
Confidence 3456778888999999999988876 35667777777888899988864
Done!