RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13892
         (628 letters)



>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
           immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 216

 Score = 29.9 bits (67), Expect = 0.70
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 9   DIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIR 68
           D+  A+ +V L+E  R YT            +    +  ++  LP G   SP +    + 
Sbjct: 110 DVGDAYFSVPLDEDFRKYTAFTIPS----INNETPGIRYQYNVLPQGWKGSPAIFQSSMT 165

Query: 69  THLDKYSGDYIDQLKNNIYMDNILCGVNNEEE 100
             L  +     D +    YMD++  G +    
Sbjct: 166 KILAPFKAANPD-IVIYQYMDDLYVGSDLAIG 196


>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
           halodurans [TaxId: 86665]}
          Length = 132

 Score = 28.3 bits (63), Expect = 1.3
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 297 PTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNK 349
           P    T    E L  +   R LK   +   I       + ++Q  I W+   K
Sbjct: 38  PIPIGTNNMGEFLAIVHGLRYLKERNSRKPI-------YSNSQTAIKWVKDKK 83


>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes
           missouriensis [TaxId: 1866]}
          Length = 392

 Score = 27.6 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 283 DIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRS 317
           D       A S+VA    PTL   E    L+A RS
Sbjct: 326 DPEVQEALAASKVAELKTPTLNPGEGYAELLADRS 360


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,409,800
Number of extensions: 115558
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 8
Length of query: 628
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 537
Effective length of database: 1,158,166
Effective search space: 621935142
Effective search space used: 621935142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)