BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13894
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 149 bits (376), Expect = 1e-35, Method: Composition-based stats.
Identities = 78/162 (48%), Positives = 104/162 (64%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV Q ++RDLEKL G R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SGI GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 693 IAIIYLLSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +FA+GL P+ N AH SG V L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 631 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 666
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 404 RPFFTYWLTFVHSLVTILAVCIYGIAPVGFS 434
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 148 bits (374), Expect = 2e-35, Method: Composition-based stats.
Identities = 77/162 (47%), Positives = 104/162 (64%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV Q ++RDLEKL G R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHR 692
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SG+ GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +FA+GL P+ N AH SG V L
Sbjct: 744 RP----WRAFFKLLAVVLFLFAFGLLPWIDNFAHISGFVSGL 781
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 631 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 666
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 404 RPFFTYWLTFVHSLVTILAVCIYGIAPVGFS 434
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 147 bits (370), Expect = 6e-35, Method: Composition-based stats.
Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV Q ++RDLEKL G R
Sbjct: 633 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHR 692
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SG+ GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 693 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 743
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +F +GL P+ N AH SG + L
Sbjct: 744 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 781
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 631 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 666
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 404 RPFFTYWLTFVHSLVTILAVCIYGVAPVGFS 434
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 145 bits (367), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+ Q ++RDLEKL G R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SG+ GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +F +GL P+ N AH SG + L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 630 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 665
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 403 RPFFTYWLTFVHSLVTILAVCIYGIAPVGFS 433
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 145 bits (367), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+ Q ++RDLEKL G R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SG+ GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +F +GL P+ N AH SG + L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 630 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 665
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 403 RPFFTYWLTFVHSLVTILAVCIYGIAPVGFS 433
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 145 bits (367), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+ Q ++RDLEKL G R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SG+ GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +F +GL P+ N AH SG + L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 630 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 665
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 403 RPFFTYWLTFVHSLVTVLAVCIYGIAPVGFS 433
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 145 bits (367), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++S+ Q ++RDLEKL G R
Sbjct: 632 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHR 691
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAIIY SG+ GNLASAIF+PYRA+V + G++ V + ++ W L A
Sbjct: 692 IAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELFQSWQIL-----A 742
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W +++ + L +F +GL P+ N AH SG + L
Sbjct: 743 RP----WRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGL 780
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 630 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 665
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYW+T V ++ L++ YG+ P GF+
Sbjct: 403 RPFFTYWLTFVHSLVTILAVCIYGIAPVGFS 433
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 144 bits (364), Expect = 3e-34, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 102/159 (64%), Gaps = 13/159 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V C+D+VCG++PF N + PDQFYRLW SLFLHAG++H ++SV Q ++RDLEKL G R
Sbjct: 634 VHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLR 693
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
I+IIY SGI GNLASAIF+PYRA+V + G++ V + + W L A
Sbjct: 694 ISIIYILSGITGNLASAIFLPYRAEVGPAGSQFGILACLFV----ELIQSWQIL-----A 744
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
+P W +++ + L +FA+GL P+ N AH SG +
Sbjct: 745 QP----WRAFTKLLCVVLFLFAFGLLPWIDNFAHISGFI 779
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V C+D+VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 632 SQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAG 667
Score = 47.0 bits (110), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFN 153
RPFFTYWIT V I+I L++ YG+ P GF+
Sbjct: 405 RPFFTYWITFVHILITILAVCIYGIAPVGFS 435
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 139 bits (351), Expect = 8e-33, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V CLD VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV+ Q ++RDLEKL G R
Sbjct: 604 VHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHR 663
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAII+ SGI GNLASAIF+PYRA+V + G++ V + ++ W L
Sbjct: 664 IAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFV----ELFQSWQLL-----E 714
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W + + + L +F GL P+ N+AH G + L
Sbjct: 715 RP----WKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGL 752
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V CLD VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 602 SQVHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAG 637
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQ 163
RP+FTYW+T V III L I YG+ P GF + LV++
Sbjct: 372 RPYFTYWLTFVHIIITLLVICTYGIAPVGFAQHVTTQLVLR 412
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 139 bits (351), Expect = 9e-33, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 100/162 (61%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V CLD VCG++PF N + PDQFYRLW SLFLHAGV+H ++SV+ Q ++RDLEKL G R
Sbjct: 633 VHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHR 692
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
IAII+ SGI GNLASAIF+PYRA+V + G++ V + ++ W L
Sbjct: 693 IAIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFV----ELFQSWPLL-----E 743
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
RP W + + + L +F GL P+ N+AH G + L
Sbjct: 744 RP----WKAFLNLSAIVLFLFICGLLPWIDNIAHIFGFLSGL 781
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V CLD VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 631 SQVHCLDKVCGLLPFLNPEVPDQFYRLWLSLFLHAG 666
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQ 163
RP+FTYW+T V +II L I YG+ P GF + LV++
Sbjct: 401 RPYFTYWLTFVHVIITLLVICTYGIAPVGFAQHVTTQLVLR 441
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 135 bits (341), Expect = 1e-31, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 98/159 (61%), Gaps = 13/159 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V CLD VCG++PF N + PDQFYR+W SLFLHAG++H ++SV+ Q ++RDLEKL G R
Sbjct: 604 VHCLDKVCGLLPFLNPEVPDQFYRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHR 663
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
I+II+ SGI GNLASAIF+PYRA+V + G++ V + ++ W L
Sbjct: 664 ISIIFILSGITGNLASAIFLPYRAEVGPAGSQFGLLACLFV----ELFQSWQLL-----E 714
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLV 161
RP W + + L +F GL P+ N+AH G +
Sbjct: 715 RP----WKAFFNLSAIVLFLFICGLLPWIDNIAHIFGFL 749
Score = 63.5 bits (153), Expect = 7e-10, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V CLD VCG++PF N + PDQFYR+W SLFLHAG
Sbjct: 602 SQVHCLDKVCGLLPFLNPEVPDQFYRIWLSLFLHAG 637
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQ 163
RP+FTYW+T V III L I YG+ P GF + LV++
Sbjct: 373 RPYFTYWLTFVHIIITLLVICTYGIAPVGFAQHVTTQLVLK 413
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 132 bits (332), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 103/162 (63%), Gaps = 13/162 (8%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
V CLD VCG++PF N + PDQFYRLW SLFLHAGVIH +SV+ Q ++RDLEKL G R
Sbjct: 603 VHCLDEVCGLLPFLNPEYPDQFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLR 662
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGA 122
I+IIY SGI GNLASA+F+PYRA+V + G++ V + ++ W L A
Sbjct: 663 ISIIYILSGITGNLASALFLPYRAEVGPAGSQFGLLACLFV----ELFQSWQIL-----A 713
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQL 164
+P W ++++ + L +F +GL P+ N+AH G + L
Sbjct: 714 KP----WKAFLKLLGIVLFLFLFGLLPWIDNIAHIFGFLSGL 751
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ V CLD VCG++PF N + PDQFYRLW SLFLHAG
Sbjct: 601 SQVHCLDEVCGLLPFLNPEYPDQFYRLWLSLFLHAG 636
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQ 163
RP+F YWIT V I+I L+I YG+ P GF S LV++
Sbjct: 372 RPYFAYWITFVHILITILAIATYGIAPIGFAQHTTSELVLR 412
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 117 bits (292), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/96 (52%), Positives = 71/96 (73%)
Query: 3 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFR 62
+SCL+NVCGM PF +V++PDQ YRL TSL +HAG++HL I++I Q + + DLE+L G+ R
Sbjct: 1072 ISCLNNVCGMFPFISVETPDQLYRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVR 1131
Query: 63 IAIIYFGSGIGGNLASAIFVPYRADVSCLDNVCGMI 98
AI+Y SG GNL SAI VP+R +V ++ G++
Sbjct: 1132 TAIVYIMSGFAGNLTSAILVPHRPEVGPSASLSGVV 1167
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 86 ADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAG 121
+ +SCL+NVCGM PF +V++PDQ YRL TSL +HAG
Sbjct: 1070 SQISCLNNVCGMFPFISVETPDQLYRLLTSLCMHAG 1105
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 123 RPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVV 162
RPFFTYWI TVQ+++L LSI YG+ P G +G V+
Sbjct: 834 RPFFTYWINTVQVVVLILSIICYGIAPIGIGSEQKTGQVL 873
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 20 SPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGI-----GG 74
+PDQ++R +FLH+G +H+ +++VQ + D+E++ G +R ++Y SGI GG
Sbjct: 247 APDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGFVLGG 306
Query: 75 NLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQ 134
N A A C + G++ + +D L G W V+
Sbjct: 307 NYAGQ----GEASCGCSGALFGILALFVLD-------------LLYGWNDRQNPW---VE 346
Query: 135 IIILCLSI---FAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQDMG 183
+II+ L I F GL P N +H G + L G R N ++ +G
Sbjct: 347 LIIMVLGIAVSFVLGLLPGLDNFSHLGGFTMGLALGLCVMRSP-NALRERIG 397
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFV 82
+++RL T + LH G+ HL + + + + +E++ GS R +IY +GI G++AS +F
Sbjct: 221 EWWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFS 280
Query: 83 PY 84
PY
Sbjct: 281 PY 282
>sp|Q9NX52|RHBL2_HUMAN Rhomboid-related protein 2 OS=Homo sapiens GN=RHBDL2 PE=1 SV=2
Length = 303
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 14 PF-YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGI 72
PF Y+ + ++ +R + + +HAGV H++ ++ +Q +L LE + R+ ++Y I
Sbjct: 109 PFIYSPEKREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVI 168
Query: 73 GGNLASAIFVPYR 85
G+LAS+IF P R
Sbjct: 169 AGSLASSIFDPLR 181
>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1
Length = 641
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 25 YRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVP 83
+RL+TS+++H G +H++I++ Q ++ +E G R +++F GI GNL SA+ P
Sbjct: 343 FRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFLRTTLLFFLGGISGNLLSAVADP 401
>sp|A2AGA4|RHBL2_MOUSE Rhomboid-related protein 2 OS=Mus musculus GN=Rhbdl2 PE=1 SV=1
Length = 302
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y + ++ +R + + +HAGV H+V ++++Q +L LE + R+ ++Y + G+
Sbjct: 111 YCPEKREEAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGS 170
Query: 76 LASAIFVPYRADVSCLDNVCGMI 98
LAS+IF P ++ V V ++
Sbjct: 171 LASSIFDPLKSLVGASGGVYALM 193
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 2 VVSCLDNVCGMIPFYNVDSPD-QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGS 60
VV D V G YN+ + +++RL T + LHAG HL+ + + F+ LE++ G
Sbjct: 39 VVLWRDTVTG----YNLGVANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGK 94
Query: 61 FRIAIIYFGSGIGGNLASAIFVP 83
R ++Y GSGI GN+ + + P
Sbjct: 95 ARFLLVYAGSGIIGNIGTYVTEP 117
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFV 82
Q +R+ T LFLHA ++HLV++++ + LE+ G+ + + YF S I GNL S +
Sbjct: 82 QLWRVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKFLVTYFLSAIVGNLLSMLMQ 141
Query: 83 PYRADV 88
P+ V
Sbjct: 142 PWALSV 147
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y+ Q +R T +F+HAG+ HL ++V++Q ++ LE + G+ RI ++Y + G+
Sbjct: 203 YHPQLRAQVWRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGS 262
Query: 76 LASAI 80
LA ++
Sbjct: 263 LAVSV 267
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y D Q +R ++ +FLHA HL ++++Q LE + G+ RI +IY G+
Sbjct: 142 YRPDRRLQVWRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYMAGVFAGS 201
Query: 76 LASAI 80
L +++
Sbjct: 202 LGTSV 206
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y+ Q +R T +F+HAGV L ++V +Q ++ LE + G+ RI ++Y + G+
Sbjct: 203 YHPQLRAQAWRYVTYIFMHAGVEQLGLNVALQLLVGVPLEMVHGATRIGLVYVAGVVAGS 262
Query: 76 LASAI 80
LA ++
Sbjct: 263 LAVSV 267
>sp|Q6GV23|RHBL5_TOXGO Rhomboid-like protease 5 OS=Toxoplasma gondii GN=ROM5 PE=1 SV=1
Length = 841
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 24/124 (19%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFV 82
+ +R+ +FLH G +HL+++V Q + LE G R ++ G+ G+L SA+
Sbjct: 463 EMFRVVWGMFLHGGWMHLLLNVSCQAQTLWILEPAWGFLRTLSLWIVGGVSGSLLSAVAN 522
Query: 83 PYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPF-FTYW--ITTVQIIILC 139
P C + V S FY L +L PF YW I + + C
Sbjct: 523 P-----------CTV----TVGSSGAFYGLLGALV------PFSIEYWDHIASPAWFLFC 561
Query: 140 LSIF 143
+S+
Sbjct: 562 VSVL 565
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASA 79
+ +RL LFLH + H+++++ VQ + +E+ G + +YFG G+ N+ SA
Sbjct: 109 EIWRLICPLFLHLNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISA 165
>sp|Q695U0|RHBL1_TOXGO Rhomboid-like protease 1 OS=Toxoplasma gondii GN=ROM1 PE=2 SV=1
Length = 293
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 1 MVVSCLDNVCGMIPFYNV------DSPD-----QFYRLWTSLFLHAGVIHLVISVIVQFI 49
+V CLD +IP N+ + P Q +RL +FLHA H+ +V Q
Sbjct: 75 IVTVCLDTELPLIPAANILVHFGANYPPLIKQGQVWRLLLPVFLHANFFHVFFNVFFQLR 134
Query: 50 LMRDLEKLTGSFRIAIIYFGSGIGGNLASA 79
+ +E+ G + +YF S I GNL SA
Sbjct: 135 MGFTIERRYGLLKFTGLYFASAIYGNLLSA 164
>sp|Q8VC82|RHBL1_MOUSE Rhomboid-related protein 1 OS=Mus musculus GN=Rhbdl1 PE=2 SV=1
Length = 373
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y+ + +R T +F+H G+ L + ++Q ++ LE + G RI+++Y + G+
Sbjct: 172 YHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGS 231
Query: 76 LASAI 80
L +I
Sbjct: 232 LTVSI 236
>sp|O75783|RHBL1_HUMAN Rhomboid-related protein 1 OS=Homo sapiens GN=RHBDL1 PE=2 SV=1
Length = 438
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y+ + +R T +F+H G+ L + ++Q ++ LE + G RI+++Y + G+
Sbjct: 237 YHPGHRARAWRFLTYMFMHVGLEQLGFNALLQLMIGVPLEMVHGLLRISLLYLAGVLAGS 296
Query: 76 LASAI 80
L +I
Sbjct: 297 LTVSI 301
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
Y + ++R S+ LH+ HL + + F++ E+ G F++ IY SGIG
Sbjct: 60 YQLSLTGDWWRYPISMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAA 119
Query: 76 LASAIFVPYR 85
L SA + Y
Sbjct: 120 LFSAYWQYYE 129
>sp|Q57362|Y195A_HAEIN Uncharacterized MscS family protein HI_0195.1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=HI_0195.1 PE=1 SV=1
Length = 1111
Score = 33.9 bits (76), Expect = 0.72, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 94 VCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
VC MI F+ +P++F+ W+ F AG FFT+WI+
Sbjct: 557 VCQMIGFFFFKNPEEFWH-WS--FSMAGYWWFFTFWIS 591
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNL 76
+ +R + +FLHAG+ HL+ +VI+Q ++ LE +RI IY + G+L
Sbjct: 165 EAWRFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSL 218
>sp|P34356|ROM2_CAEEL Rhomboid-related protein 2 OS=Caenorhabditis elegans GN=rom-2 PE=3
SV=2
Length = 435
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFV 82
+ +RL+T ++ G+ H++ ++++Q + LE L +RI I+YF + G++ S
Sbjct: 168 ELWRLFTYCLINVGIFHIIFNILIQLAIGVPLE-LVHRWRIYILYFMGVLFGSILSLALD 226
Query: 83 P 83
P
Sbjct: 227 P 227
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana
GN=At3g58460 PE=1 SV=2
Length = 403
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRI 63
Q YR +T++ H ++H++ +++ + +LE++ GS R+
Sbjct: 63 QVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRL 103
>sp|A1JSF0|GLPG_YERE8 Rhomboid protease GlpG OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=glpG PE=3 SV=1
Length = 278
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 65/159 (40%), Gaps = 17/159 (10%)
Query: 23 QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF- 81
Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S + ++F
Sbjct: 135 QIWRWVSHAFLHFSLLHILFNLMWWWYLAGQMEKRLGTGKLLVLTIVSALFSGWGQSLFS 194
Query: 82 -VPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCL 140
V + + + G + +P++ + L G F W+ IL L
Sbjct: 195 GVNFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLVAGYFDILGL 248
Query: 141 SIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTK 179
SI N AH SGL++ L R+ T+
Sbjct: 249 SI---------ANAAHVSGLIIGLLMAFWDTRNSAKTTQ 278
>sp|B1JHY8|GLPG_YERPY Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|A4TGR2|GLPG_YERPP Rhomboid protease GlpG OS=Yersinia pestis (strain Pestoides F)
GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|Q1CCK6|GLPG_YERPN Rhomboid protease GlpG OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|Q7CFX8|GLPG_YERPE Rhomboid protease GlpG OS=Yersinia pestis GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|B2K5W4|GLPG_YERPB Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|Q1C2L2|GLPG_YERPA Rhomboid protease GlpG OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|A7FNW6|GLPG_YERP3 Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P++ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPER------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|Q664J1|GLPG_YERPS Rhomboid protease GlpG OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=glpG PE=3 SV=1
Length = 278
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 22/169 (13%)
Query: 16 YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
YN Q +R + FLH ++H++ +++ + L +EK G+ ++ ++ S +
Sbjct: 128 YNSSQYLQIWRWVSHAFLHFSLLHILFNLMWWWYLGGQMEKRLGTSKLLVLTIVSAVFSG 187
Query: 76 LASAIFVPYRADVSCLDNVC----GMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWIT 131
++F A+ L V G + +P+ + L G F W+
Sbjct: 188 WGQSLFSG--ANFGGLSGVVYALMGYVWLTGERAPEH------GISLPRGLMAFSVLWLI 239
Query: 132 TVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKARDDGNRTKQ 180
IL LSI N AH SGL++ L R+ RT Q
Sbjct: 240 AGYFDILGLSI---------ANAAHVSGLIIGLLMAFWDTRNSA-RTVQ 278
>sp|O88779|RHBL1_RAT Rhomboid-related protein 1 (Fragment) OS=Rattus norvegicus
GN=Rhbdl1 PE=2 SV=1
Length = 164
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 32 FLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAI 80
F+H G+ L + ++Q ++ LE + G RI+++Y + G+L +I
Sbjct: 1 FMHVGLEQLGFNALLQLMIGVPLEMVHGVLRISLLYLAGVLAGSLTVSI 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.145 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,587,038
Number of Sequences: 539616
Number of extensions: 2917822
Number of successful extensions: 6952
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6872
Number of HSP's gapped (non-prelim): 85
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)