Query psy13894
Match_columns 191
No_of_seqs 118 out of 1157
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:09:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 1.6E-27 5.5E-32 185.7 14.4 149 9-172 32-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1.6E-28 5.4E-33 193.7 7.0 153 8-176 36-189 (196)
3 2k1k_A Ephrin type-A receptor 14.6 1.5E+02 0.005 16.1 2.6 13 155-167 11-23 (38)
4 3qe7_A Uracil permease; uracil 14.0 2.3E+02 0.0077 23.9 4.9 35 151-185 387-421 (429)
5 2jwa_A Receptor tyrosine-prote 11.6 71 0.0024 18.2 0.7 13 161-173 26-38 (44)
6 2kxa_A Haemagglutinin HA2 chai 10.2 1.8E+02 0.0061 14.9 1.8 7 159-165 4-10 (30)
7 3gia_A Uncharacterized protein 8.7 7.6E+02 0.026 19.8 7.6 12 160-171 409-420 (444)
8 3ukx_C Bimax2 peptide; arm rep 7.5 2.1E+02 0.007 14.1 1.3 14 174-187 6-19 (28)
9 4b2v_A S64; toxin, ICK; NMR {S 6.8 2.4E+02 0.008 14.3 1.4 17 5-24 3-19 (32)
10 3l1l_A Arginine/agmatine antip 6.0 1E+03 0.035 18.9 8.6 89 92-190 357-445 (445)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=1.6e-27 Score=185.69 Aligned_cols=149 Identities=15% Similarity=0.047 Sum_probs=111.1
Q ss_pred ccccccccCCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCcee
Q psy13894 9 VCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRADV 88 (191)
Q Consensus 9 ~~gl~p~~~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~v 88 (191)
..++.|.. ..++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.+++.+++.+.++.|+. .+
T Consensus 32 ~~~~~p~~--~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~v 108 (181)
T 2xov_A 32 WLAWPFDP--TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FG 108 (181)
T ss_dssp HHSSCCSG--GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CC
T ss_pred hhcCChhh--ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ce
Confidence 34455542 2578999999999999999999999999999999999999999999999999999999999988754 89
Q ss_pred chhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhh
Q psy13894 89 SCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGT 168 (191)
Q Consensus 89 GaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~ 168 (191)
|+||+++|++++.... . ...+..+. ..+.. . .......+...+.....+++|+.||++|+++|++++.
T Consensus 109 GaSGai~gl~g~~~~~----~-~~~p~~~~---~l~~~-~---~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~ 176 (181)
T 2xov_A 109 GLSGVVYALMGYVWLR----G-ERDPQSGI---YLQRG-L---IIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAF 176 (181)
T ss_dssp CSHHHHHHHHHHHHHH----H-HHCGGGSC---CCCHH-H---HHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHH----H-hhCcCcee---eeHHH-H---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 9999999999977542 1 11111110 01222 1 1112222222222223579999999999999999999
Q ss_pred hhcC
Q psy13894 169 TKAR 172 (191)
Q Consensus 169 ~~~~ 172 (191)
.++|
T Consensus 177 ~~~~ 180 (181)
T 2xov_A 177 VDSL 180 (181)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.95 E-value=1.6e-28 Score=193.69 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=112.2
Q ss_pred cccccccccCCCCCCCchhhhhhhhcccCHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCce
Q psy13894 8 NVCGMIPFYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIFVPYRAD 87 (191)
Q Consensus 8 ~~~gl~p~~~~~~~~q~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~lE~~~G~~~~~~lyl~s~i~g~l~~~l~~~~~~~ 87 (191)
+..++.|... .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.+++.+.++.|+. .
T Consensus 36 ~~~~~~p~~~--~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~ 112 (196)
T 2nr9_A 36 YLMHYPAYEE--QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-F 112 (196)
T ss_dssp HHHSCCCSGG--GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-C
T ss_pred HhhcCCHhhc--ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-e
Confidence 3455555432 578999999999999999999999999999999999999999999999999999999999988764 9
Q ss_pred echhHHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHHHH
Q psy13894 88 VSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYG-LGPFGFNLAHNSGLVVQLEA 166 (191)
Q Consensus 88 vGaSg~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~aHl~G~l~G~l~ 166 (191)
+|+||+++|++++.... | .........+ .+.. ......+...+... ..+++|+.||++|+++|+++
T Consensus 113 vGaSGai~gl~g~~~~~-~---~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~ 179 (196)
T 2nr9_A 113 FGLSGVVYAVLGYVFIR-D---KLNHHLFDLP---EGFF------TMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIW 179 (196)
T ss_dssp CCSHHHHHHHHHHHHHH-H---HSSTTSCCCC---CSST------TTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHH-H---Hhcchhhcch---HHHH------HHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHH
Confidence 99999999999976543 1 1000000100 1111 01111111112111 24589999999999999999
Q ss_pred hhhhcCCCcc
Q psy13894 167 GTTKARDDGN 176 (191)
Q Consensus 167 g~~~~~~~~~ 176 (191)
+..+.+++++
T Consensus 180 ~~~~~~~~~~ 189 (196)
T 2nr9_A 180 GFIDSKLRKN 189 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcccc
Confidence 9998775443
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=14.64 E-value=1.5e+02 Score=16.13 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q psy13894 155 AHNSGLVVQLEAG 167 (191)
Q Consensus 155 aHl~G~l~G~l~g 167 (191)
+-+.|+++|.+.+
T Consensus 11 GaIAGiVvG~v~g 23 (38)
T 2k1k_A 11 GEIVAVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CceeeeehHHHHH
Confidence 4445555555544
No 4
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=13.97 E-value=2.3e+02 Score=23.92 Aligned_cols=35 Identities=6% Similarity=-0.197 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCccchhcccCCC
Q psy13894 151 GFNLAHNSGLVVQLEAGTTKARDDGNRTKQDMGSD 185 (191)
Q Consensus 151 i~~~aHl~G~l~G~l~g~~~~~~~~~~~~~~~~~~ 185 (191)
....+-..|.+++.++-.+++++++.++.++..++
T Consensus 387 ~~~~gi~~~~~~ai~ln~~l~~~~~~~~~~~~~~~ 421 (429)
T 3qe7_A 387 AELKGMALATIVGIGLSLIFKLISVLRPEEVVLDA 421 (429)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred hccCcHHHHHHHHHHHHHHhcCccccCCcceEecc
Confidence 33445556777777777777766555555443333
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=11.62 E-value=71 Score=18.21 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=6.1
Q ss_pred HHHHHHhhhhcCC
Q psy13894 161 VVQLEAGTTKARD 173 (191)
Q Consensus 161 l~G~l~g~~~~~~ 173 (191)
+.|...+++++|+
T Consensus 26 i~~l~~~~~~RRR 38 (44)
T 2jwa_A 26 VLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhheehh
Confidence 3444445555443
No 6
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=10.18 E-value=1.8e+02 Score=14.93 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy13894 159 GLVVQLE 165 (191)
Q Consensus 159 G~l~G~l 165 (191)
|+|+|++
T Consensus 4 GAIAGfi 10 (30)
T 2kxa_A 4 GAIAGFI 10 (30)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 4444443
No 7
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=8.71 E-value=7.6e+02 Score=19.76 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=4.5
Q ss_pred HHHHHHHhhhhc
Q psy13894 160 LVVQLEAGTTKA 171 (191)
Q Consensus 160 ~l~G~l~g~~~~ 171 (191)
++...+....++
T Consensus 409 ~~~~~~~~~~~~ 420 (444)
T 3gia_A 409 FIGVLIFEIIYR 420 (444)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 8
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=7.47 E-value=2.1e+02 Score=14.08 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=6.6
Q ss_pred CccchhcccCCCCC
Q psy13894 174 DGNRTKQDMGSDLG 187 (191)
Q Consensus 174 ~~~~~~~~~~~~~~ 187 (191)
+++++.+.++.|-.
T Consensus 6 rrrkrkrewddddd 19 (28)
T 3ukx_C 6 RRRKRKREWDDDDD 19 (28)
T ss_dssp CCCCCCCCCCCSSS
T ss_pred HHHHhhcccccCCC
Confidence 33444455555543
No 9
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=6.84 E-value=2.4e+02 Score=14.30 Aligned_cols=17 Identities=24% Similarity=0.743 Sum_probs=0.0
Q ss_pred eeccccccccccCCCCCCCc
Q psy13894 5 CLDNVCGMIPFYNVDSPDQF 24 (191)
Q Consensus 5 ~l~~~~gl~p~~~~~~~~q~ 24 (191)
|+++ +|+.| ++.+-++|
T Consensus 3 cven-ggfcp--dpekmgdw 19 (32)
T 4b2v_A 3 CVEN-GGFCP--DPEKMGDW 19 (32)
T ss_dssp CCCT-TCBCC--CTTTTCCC
T ss_pred hhhc-CCcCC--ChHHhcch
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=6.04 E-value=1e+03 Score=18.90 Aligned_cols=89 Identities=13% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCcchhHHHHHHhhhhcCCCchhhHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHhhhhc
Q psy13894 92 DNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQIIILCLSIFAYGLGPFGFNLAHNSGLVVQLEAGTTKA 171 (191)
Q Consensus 92 g~v~gl~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~aHl~G~l~G~l~g~~~~ 171 (191)
..+..++...... ....+.+.+.++...+.. .+...+.........-..+......-+.-.+.|..+....+
T Consensus 357 ~~~~~~~~y~~~~----~~~~~~r~~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~ 428 (445)
T 3l1l_A 357 SVIFTLVPYLYTC----AALLLLGHGHFGKARPAY----LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNY 428 (445)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHSSSSGGGCTTT----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHhhcCcccccchh----HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCCccchhcccCCCCCCCC
Q psy13894 172 RDDGNRTKQDMGSDLGSDP 190 (191)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~ 190 (191)
+++++++.++ ++..++|
T Consensus 429 ~~~~~~~~~~--~~~~~~~ 445 (445)
T 3l1l_A 429 NRLHKNPYPL--DAPISKD 445 (445)
T ss_dssp STTCCCSSCC--CC-----
T ss_pred hhcccCcccc--cccccCC
Done!