RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13894
(191 letters)
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease,
membrane protein; HET: PA6 PQE; 2.20A {Haemophilus
influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Length = 196
Score = 65.1 bits (159), Expect = 2e-13
Identities = 9/68 (13%), Positives = 26/68 (38%)
Query: 17 NVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGNL 76
+ + +R + +H +H++ ++ FI +E+ GS ++ ++Y +
Sbjct: 43 YEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGY 102
Query: 77 ASAIFVPY 84
Sbjct: 103 VQNYVSGP 110
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane
protease; HET: BNG; 1.65A {Escherichia coli} PDB:
2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A*
3txt_A* 2xtv_A* 3b44_A*
Length = 181
Score = 61.5 bits (150), Expect = 2e-12
Identities = 13/69 (18%), Positives = 32/69 (46%)
Query: 15 FYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGG 74
++ +F+R +T +H ++H++ +++ + L +EK GS ++ +I S +
Sbjct: 36 PFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLS 95
Query: 75 NLASAIFVP 83
F
Sbjct: 96 GYVQQKFSG 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.054
Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 49/178 (27%)
Query: 18 VDSPD---QFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGG 74
+ S D RL+ +L + + V+ +L + + L +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEM---VQKFVEEVLRINYKFLMSPIKT------EQRQP 105
Query: 75 NLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSL---------FLH--AGA- 122
++ + +++ R D DN + YNV + +L +L + G+
Sbjct: 106 SMMTRMYIEQR-DRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 123 -----------------RPFFTYWIT-----TVQIIILCLSIFAYGLGPFGFNLAHNS 158
F +W+ + + ++ L Y + P + + +S
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Score = 29.1 bits (64), Expect = 1.1
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 16 YNVDSPDQFYRLWTSL--FLHAGVIHLVISV---IVQFILMRDLEKL 57
Y D+ ++ RL ++ FL +L+ S +++ LM + E +
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 26.4 bits (57), Expect = 7.4
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 23/87 (26%)
Query: 1 MVVSCLDNVCG---MIPFYNVDSPDQFYRLWTSLF-L--HAGV-IH---------LVISV 44
M + D + + YNV + +L +L L V I + + V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 45 IVQFILMRDLEKLTG-SFRIAIIYFGS 70
+ F+I + +
Sbjct: 171 C------LSYKVQCKMDFKIFWLNLKN 191
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 29.9 bits (67), Expect = 0.45
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 22/91 (24%)
Query: 45 IVQFILMRDLEKLTGSFRIAIIYFGSGIGGNLASAIF----VPYRADVSCLDNVCGMIPF 100
I I + L K G I + SG G ++ + + + F
Sbjct: 46 ICHQIAEKQLSKEGGHVVIGL----SG--GKTPIDVYKNIALVKDIKIDT-SKLI----F 94
Query: 101 YNVD-------SPDQFYRLWTSLFLHAGARP 124
+ +D Y LF
Sbjct: 95 FIIDERYKRDDHKFSNYNNIKFLFESLKINE 125
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 26.4 bits (59), Expect = 6.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 9 VCGMIPFYNVDSPDQFYRLWTSLF 32
VCGMI YN+++ + + L ++
Sbjct: 253 VCGMISQYNLENQEGVHNLSNIIY 276
Score = 26.4 bits (59), Expect = 6.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 94 VCGMIPFYNVDSPDQFYRLWTSLF 117
VCGMI YN+++ + + L ++
Sbjct: 253 VCGMISQYNLENQEGVHNLSNIIY 276
>2ft0_A TDP-fucosamine acetyltransferase; GNAT fold acetyltransferase,
structural genomics, montreal-K bacterial structural
genomics initiative, BSGI; HET: ACO; 1.66A {Escherichia
coli} PDB: 2fs5_A*
Length = 235
Score = 25.8 bits (56), Expect = 8.5
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 14 PFYNVDSPDQFYRLWTSLFLHAGVIHLVISV------IVQFILMRDLEKLTGSFRIAIIY 67
P+Y D+ +FY W + H + + I ++ +R+L +
Sbjct: 123 PWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNATDARIG---LL 179
Query: 68 FGSGIGGNLASA 79
G G G L
Sbjct: 180 AGRGAGAELMQT 191
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 25.8 bits (57), Expect = 9.2
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 62 RIAIIYFGSGIGGNLASAI 80
R ++ G+G+GG L +
Sbjct: 2 RAVVV--GAGLGG-LLAGA 17
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.464
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,033,236
Number of extensions: 177613
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 16
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)