RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13894
         (191 letters)



>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 48.2 bits (114), Expect = 5e-08
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 13/147 (8%)

Query: 16  YNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGGN 75
           ++     +F+R +T   +H  ++H++ +++  + L   +EK  GS ++ +I   S +   
Sbjct: 37  FDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSG 96

Query: 76  LASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQI 135
                F            V  ++ +  +                      +      +  
Sbjct: 97  YVQQKFSGPWF-GGLSGVVYALMGYVWL------------RGERDPQSGIYLQRGLIIFA 143

Query: 136 IILCLSIFAYGLGPFGFNLAHNSGLVV 162
           +I  ++ +    G    N AH +GL V
Sbjct: 144 LIWIVAGWFDLFGMSMANGAHIAGLAV 170


>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 189

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 21/148 (14%), Positives = 49/148 (33%), Gaps = 13/148 (8%)

Query: 15  FYNVDSPDQFYRLWTSLFLHAGVIHLVISVIVQFILMRDLEKLTGSFRIAIIYFGSGIGG 74
               +   + +R  +   +H   +H++ ++   FI    +E+  GS ++ ++Y  +    
Sbjct: 38  PAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAIT 97

Query: 75  NLASAIFVPYRADVSCLDNVCGMIPFYNVDSPDQFYRLWTSLFLHAGARPFFTYWITTVQ 134
                      A       V  ++ +  +      +                     T+ 
Sbjct: 98  GYVQNYVSGP-AFFGLSGVVYAVLGYVFIRDKLNHHLF------------DLPEGFFTML 144

Query: 135 IIILCLSIFAYGLGPFGFNLAHNSGLVV 162
           ++ + L   +   G    N AH SGL+V
Sbjct: 145 LVGIALGFISPLFGVEMGNAAHISGLIV 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.464 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 739,984
Number of extensions: 33188
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 9
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)