BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13896
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DEL|B Chain B, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|C Chain C, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|D Chain D, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|F Chain F, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
Length = 242
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 45 HIRELCLLLAGEQETQLPLTDYRS-CVQVDSVLDLTNSDLIGCHV 88
I+ L L+ GE + LPLT YRS VQ + + L H+
Sbjct: 97 EIKHLVLVFKGENKHPLPLTQYRSVAVQTGTYQEAYLQSLSEVHI 141
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 81 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 138
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 77 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 134
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 77 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 134
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 77 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 134
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 77 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 134
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 77 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 134
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 80 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 137
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNSDL 83
KR+A VE + V++ +R LLA + +P V D V+DL N L
Sbjct: 80 KRIAYEFVEMKAKEGVVYVEVRYSPHLLANSKVDPMPWNQTEGDVTPDDVVDLVNQGL 137
>pdb|3RIQ|A Chain A, Siphovirus 9na Tailspike Receptor Binding Domain
Length = 543
Score = 26.9 bits (58), Expect = 6.1, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 77 DLTNSDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVGCGA 136
DLTN + I C GGSR+ + I+V T G+ V + E V C
Sbjct: 367 DLTNLNQIVCE------GGSRL---------RGIMVHAYTTQGYAVYAPSSEVSNVSCAG 411
Query: 137 GGSRVHRFLVVNDVQ 151
G++ V D+Q
Sbjct: 412 SGTKKILCTYVADIQ 426
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 81 SDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVG 133
SDL+ CHV+ + + F+ V + + P R W V P VG
Sbjct: 113 SDLVNCHVIAAPSMVAMFENFVSVTQEEDV---PQVRRDWYVYAFLSSLPWVG 162
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 81 SDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVG 133
SDL+ CHV+ + + F+ V + + P R W V P VG
Sbjct: 113 SDLVNCHVIAAPSMVAMFENFVSVTQEEDV---PQVRRDWYVYAFLSSLPWVG 162
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 81 SDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVG 133
SDL+ CHV+ + + F+ V + + P R W V P VG
Sbjct: 132 SDLVNCHVIAAPSMVAMFENFVSVTQEEDV---PQVRRDWYVYAFLSSLPWVG 181
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.6 bits (57), Expect = 6.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 81 SDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVG 133
SDL+ CHV+ + + F+ V + + P R W V P VG
Sbjct: 113 SDLVNCHVIAAPSMVAMFENFVSVTQEEDV---PQVRRDWYVYAFLSSLPWVG 162
>pdb|3NKD|A Chain A, Structure Of Crisp-Associated Protein Cas1 From
Escherichia Coli Str. K-12
pdb|3NKD|B Chain B, Structure Of Crisp-Associated Protein Cas1 From
Escherichia Coli Str. K-12
Length = 305
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 59 TQLPLTDYRSCVQVDSVLDLTNSDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRV 118
+PL D S + L D+I V G R H + V V I++EP TRV
Sbjct: 7 NPIPLKDRVSMI----FLQYGQIDVIDGAFVLIDKTGIRTH--IPVGSVACIMLEPGTRV 60
Query: 119 GWGVVKLAGE 128
V+LA +
Sbjct: 61 SHAAVRLAAQ 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.144 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,055,130
Number of Sequences: 62578
Number of extensions: 199168
Number of successful extensions: 593
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 19
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)