BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13896
(171 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80U30|CL16A_MOUSE Protein CLEC16A OS=Mus musculus GN=Clec16a PE=2 SV=2
Length = 1036
Score = 125 bits (313), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 84/141 (59%), Gaps = 21/141 (14%)
Query: 21 GIDFTKRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTN 80
GIDF KRL CG VE+ +RAIRVF +R L L L GE ETQLPLT ++ D VLDL N
Sbjct: 632 GIDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLRGEPETQLPLTREEDLIKTDDVLDLNN 691
Query: 81 SDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPD-TRVGWGVVKLAGEYPGVGCGAGGS 139
SDLI C V+ G V RFL V+ Q+ LVEPD +R+GWGVVK AG
Sbjct: 692 SDLIACTVIT--KDGGMVQRFLAVDIYQMSLVEPDVSRLGWGVVKFAG------------ 737
Query: 140 RVHRFLVVNDVQVILVEPDTR 160
++ D+QV VE D+R
Sbjct: 738 ------LLQDMQVTGVEDDSR 752
>sp|Q2KHT3|CL16A_HUMAN Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=2 SV=2
Length = 1053
Score = 125 bits (313), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/141 (49%), Positives = 84/141 (59%), Gaps = 21/141 (14%)
Query: 21 GIDFTKRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTN 80
GIDF KRL CG VE+ +RAIRVF +R L L L GE ETQLPLT ++ D VLDL N
Sbjct: 648 GIDFVKRLPCGDVEKTRRAIRVFFMLRSLSLQLRGEPETQLPLTREEDLIKTDDVLDLNN 707
Query: 81 SDLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPD-TRVGWGVVKLAGEYPGVGCGAGGS 139
SDLI C V+ G V RFL V+ Q+ LVEPD +R+GWGVVK AG
Sbjct: 708 SDLIACTVIT--KDGGMVQRFLAVDIYQMSLVEPDVSRLGWGVVKFAG------------ 753
Query: 140 RVHRFLVVNDVQVILVEPDTR 160
++ D+QV VE D+R
Sbjct: 754 ------LLQDMQVTGVEDDSR 768
>sp|P46578|GOP1_CAEEL Uncharacterized protein gop-1 OS=Caenorhabditis elegans GN=gop-1
PE=2 SV=1
Length = 892
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/111 (42%), Positives = 64/111 (57%), Gaps = 9/111 (8%)
Query: 26 KRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLP---LTDYRSCVQVDSVLDLTNSD 82
KRL G ER + I +LHIR+L L GE +T+LP L + V + ++L NSD
Sbjct: 632 KRLPSGFEERIRTQIVFYLHIRKLERDLTGEGDTELPVRVLNSDQEPVAIGDCINLHNSD 691
Query: 83 LIGCHVVRG-----GAGGSRVHRFLVVNDVQVILVEPDTR-VGWGVVKLAG 127
L+ C VV G G R+ RFLV + +Q+ILVEPD+R GW +V+ G
Sbjct: 692 LLSCTVVPQQLCSLGKPGDRLARFLVTDRLQLILVEPDSRKAGWAIVRFVG 742
>sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium discoideum GN=DDB_G0289943
PE=3 SV=1
Length = 1550
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 22 IDFTKRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPL 63
+ + RL G +ER ++A++ FL +REL L +++T LPL
Sbjct: 975 LSLSHRLPSGELERTQKAVQQFLVLRELKFTLLRKKDTMLPL 1016
>sp|Q6NGD7|SYI_CORDI Isoleucine--tRNA ligase OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=ileS PE=3 SV=1
Length = 1052
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 30 CGGVERAKRAIRVFLHIR-------ELCLLLAGEQETQLPLTDYRSCVQVDSV-----LD 77
C V+RA +A++ + R + L+AGE +L D S Q+D V LD
Sbjct: 905 CKDVQRAIKAVKSGNYERRGDTVVADGIELVAGEFTERLVAADPDSTTQIDGVDGLVVLD 964
Query: 78 LTNSDLI-----GCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGV 122
+T ++ + V+RG + F V + ++V LV P+ + W +
Sbjct: 965 MTLTEELEAEGWAADVIRGLQDARKASGFEVSDRIEVKLVVPEEKKEWAL 1014
>sp|Q5XC09|Y919_STRP6 Uncharacterized protein M6_Spy0919 OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=M6_Spy0919 PE=4 SV=1
Length = 270
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 70 VQVDSVLDLTNSDLIGCHVVRGGAGGSRVHRFL---VVNDVQVILVEPDTRVGWGVVKLA 126
+ VD++++ NS+L+GC + G + +H F + Q I+ E + G KL
Sbjct: 96 LAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLT 155
Query: 127 GEY 129
Y
Sbjct: 156 SAY 158
>sp|Q8P0X2|Y1168_STRP8 Uncharacterized protein spyM18_1168 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_1168 PE=4 SV=1
Length = 270
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 70 VQVDSVLDLTNSDLIGCHVVRGGAGGSRVHRFL---VVNDVQVILVEPDTRVGWGVVKLA 126
+ VD++++ NS+L+GC + G + +H F + Q I+ E + G KL
Sbjct: 96 LAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLT 155
Query: 127 GEY 129
Y
Sbjct: 156 SAY 158
>sp|Q839D9|RPOA_ENTFA DNA-directed RNA polymerase subunit alpha OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=rpoA PE=3 SV=1
Length = 312
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 41 RVFLHIRELCLLLAGEQETQL------PLTDYRSCVQVDSVLDLTNSDLIGCHVVRGGAG 94
++ L+I+ L L L E+E L P T + VDS +++ N DL+ C V G
Sbjct: 75 QIILNIKGLALKLYAEEEKTLEIDITGPATVTAGDIIVDSDVEILNKDLVICSVAEGATF 134
Query: 95 GSRV 98
+R+
Sbjct: 135 HARL 138
>sp|P0DC29|Y856_STRPQ Uncharacterized protein SPs1056 OS=Streptococcus pyogenes serotype
M3 (strain SSI-1) GN=SPs1056 PE=4 SV=1
Length = 270
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 70 VQVDSVLDLTNSDLIGCHVVRGGAGGSRVHRFL---VVNDVQVILVEPDTRVGWGVVKLA 126
+ VD++++ NS+L+GC + G + +H F + Q I+ E + G KL
Sbjct: 96 LAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLT 155
Query: 127 GEY 129
Y
Sbjct: 156 SAY 158
>sp|P0DC28|Y856_STRP3 Uncharacterized protein SpyM3_0856 OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=SpyM3_0856 PE=4 SV=1
Length = 270
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 70 VQVDSVLDLTNSDLIGCHVVRGGAGGSRVHRFL---VVNDVQVILVEPDTRVGWGVVKLA 126
+ VD++++ NS+L+GC + G + +H F + Q I+ E + G KL
Sbjct: 96 LAVDAIVNAANSELLGCFIPNHGCIDNAIHTFAGSRLRLACQAIMTEQGRKEAIGQAKLT 155
Query: 127 GEY 129
Y
Sbjct: 156 SAY 158
>sp|A1B0G4|RSMA_PARDP Ribosomal RNA small subunit methyltransferase A OS=Paracoccus
denitrificans (strain Pd 1222) GN=rsmA PE=3 SV=1
Length = 282
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 82 DLIGCHVVRGGAGGSRVHRFLVVNDVQ-VILVEPDTRVGWGVVKLAGEYPG 131
DL GC V+ G G + R L+ + V+ +E D R + ++A YPG
Sbjct: 45 DLTGCDVIEVGPGPGGLTRGLLAEGARHVLAIEKDARALPALAEIATAYPG 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.144 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,931,538
Number of Sequences: 539616
Number of extensions: 2647062
Number of successful extensions: 7489
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7472
Number of HSP's gapped (non-prelim): 14
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)