Query psy13896
Match_columns 171
No_of_seqs 55 out of 57
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 23:12:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qqh_A Papillomavirus transcri 24.6 49 0.0017 25.9 2.8 40 34-73 2-48 (144)
2 3ndh_A Restriction endonucleas 23.7 94 0.0032 25.7 4.5 38 32-72 57-94 (225)
3 4ep4_A Crossover junction endo 17.1 81 0.0028 24.6 2.7 20 109-128 3-23 (166)
4 1hjr_A Holliday junction resol 16.7 92 0.0032 23.9 2.9 19 109-127 3-22 (158)
5 3q1c_A LEE-encoded effector ES 14.7 77 0.0026 28.1 2.1 45 58-104 45-95 (360)
6 1w1g_A HPDK1, 3-phosphoinositi 12.6 3.4E+02 0.011 21.1 5.1 43 79-121 48-91 (151)
7 2nnu_A Regulatory protein E2; 12.2 1.6E+02 0.0054 24.3 3.2 42 32-73 69-117 (205)
8 1r6n_A HPV11 E2 TAD, HPV11 reg 11.7 1.6E+02 0.0056 24.3 3.2 42 32-73 71-119 (211)
9 1wq6_A AML1-ETO; NHR2, oncopro 11.6 96 0.0033 22.0 1.5 13 31-43 35-47 (72)
10 1f46_A Cell division protein Z 10.7 2.2E+02 0.0076 21.3 3.4 46 18-65 74-122 (140)
No 1
>1qqh_A Papillomavirus transcription factor E2; amphipathic helix, cashew/kidney shape, viral protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=24.58 E-value=49 Score=25.90 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-Cc----cccccC--CCCCceeEec
Q psy13896 34 ERAKRAIRVFLHIRELCLLLAG-EQ----ETQLPL--TDYRSCVQVD 73 (171)
Q Consensus 34 Er~rraIrvffllR~L~l~L~g-e~----etqLPL--t~~~~~Vkv~ 73 (171)
.+|+.||..=++|..|..+-=+ |+ ||.+.+ +.|..|.|-|
T Consensus 2 ~KAk~AIeM~L~L~SL~~S~y~~E~WTL~dtS~E~~~t~P~~cfKK~ 48 (144)
T 1qqh_A 2 SKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKG 48 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTSCCCTTTTSHHHHTSSSTTSEEEE
T ss_pred chHHHHHHHHHHHHHHccCcccCCCcchhhCCHHHHcCCCCCCEeeC
Confidence 6899999999999998765433 32 565554 7899999877
No 2
>3ndh_A Restriction endonuclease THAI; endonuclease-DNA complex, restriction enzyme, THAI, intercal hydrolase-DNA complex; HET: DNA PGE; 1.30A {Thermoplasma acidophilum}
Probab=23.73 E-value=94 Score=25.71 Aligned_cols=38 Identities=26% Similarity=0.241 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCCceeEe
Q psy13896 32 GVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQV 72 (171)
Q Consensus 32 ~~Er~rraIrvffllR~L~l~L~ge~etqLPLt~~~~~Vkv 72 (171)
++.-.|..|-.-+++.|+-. +..||.||+|.|.--||.
T Consensus 57 ~vgs~re~i~s~lliykfge---~nvet~~pitepeidvkl 94 (225)
T 3ndh_A 57 EVGSLRERIISSLLIYKFGE---KNVETDLPITEPEIDVKL 94 (225)
T ss_dssp THHHHHHHHHHHHHHHHHCG---GGEECCCCTTCSSCCEEE
T ss_pred hhhhhHHHHHHHHHHHHhcc---cccccCCCCCCcceeeee
Confidence 45667888888888888732 235899999999877763
No 3
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=17.09 E-value=81 Score=24.57 Aligned_cols=20 Identities=35% Similarity=0.700 Sum_probs=16.1
Q ss_pred EEEEecCC-ccceEEEEEEee
Q psy13896 109 VILVEPDT-RVGWGVVKLAGE 128 (171)
Q Consensus 109 liLVEPDs-~lGwGVVkfvg~ 128 (171)
++=++|-+ +.||||+...|.
T Consensus 3 ILGIDPGl~~tG~gvi~~~g~ 23 (166)
T 4ep4_A 3 VAGIDPGITHLGLGVVAVEGK 23 (166)
T ss_dssp EEEEECCSSEEEEEEEEECSS
T ss_pred EEEEccccCceEEEEEEecCC
Confidence 44579988 999999987764
No 4
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=16.70 E-value=92 Score=23.86 Aligned_cols=19 Identities=26% Similarity=0.809 Sum_probs=15.4
Q ss_pred EEEEecCC-ccceEEEEEEe
Q psy13896 109 VILVEPDT-RVGWGVVKLAG 127 (171)
Q Consensus 109 liLVEPDs-~lGwGVVkfvg 127 (171)
++=+||-+ +.||||+...|
T Consensus 3 ILGIDPGl~~tG~gvi~~~g 22 (158)
T 1hjr_A 3 ILGIDPGSRVTGYGVIRQVG 22 (158)
T ss_dssp EEEEECCSSEEEEEEEEEET
T ss_pred EEEEccCCCCeeEEEEEecC
Confidence 45689988 89999998655
No 5
>3q1c_A LEE-encoded effector ESPG; VIRA fold, virulence factor, PAK recruitment and activation, activated kinase, signaling protein; 1.60A {Escherichia coli O127} PDB: 4fma_A 4fmd_A* 4fme_A* 4fmc_A* 3pcr_A* 3pcs_A
Probab=14.67 E-value=77 Score=28.14 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=28.7
Q ss_pred cccccCCCCCceeEe----cc--eecCCCCceeEEEEEeCCCCCceEEEEEEE
Q psy13896 58 ETQLPLTDYRSCVQV----DS--VLDLTNSDLIGCHVVRGGAGGSRVHRFLVV 104 (171)
Q Consensus 58 etqLPLt~~~~~Vkv----~d--~LdLnnsdLI~C~Vv~~~~~~~~~~RfLvv 104 (171)
+.-||..+...-|+. |. ++.++||.||-|+|++-+ +.+..-+|.-
T Consensus 45 ~PvlP~~NE~Grv~A~fsDGSsLrIsVtkSeliE~~I~tpd--~~ki~v~LEs 95 (360)
T 3q1c_A 45 EPVYPLPNELGRVSARFSDGSSLRISVTNSESIEAEIRTPD--NEKITVLLES 95 (360)
T ss_dssp EEECCCTTEEEEEEEECTTSCEEEEEEETTCCEEEEEECTT--CCEEEEEECC
T ss_pred CCCCCCccccchhhhhccCCceEEEEeeccceEEEEEEccC--CceeEEeccc
Confidence 344666554333322 22 466789999999999999 6666555543
No 6
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=12.61 E-value=3.4e+02 Score=21.14 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCCceeEEEEEeCCCCCceEEE-EEEEeeeEEEEEecCCccceE
Q psy13896 79 TNSDLIGCHVVRGGAGGSRVHR-FLVVNDVQVILVEPDTRVGWG 121 (171)
Q Consensus 79 nnsdLI~C~Vv~~~~~~~~~~R-fLvvd~~QliLVEPDs~lGwG 121 (171)
++.++|-+-.+.+..|-...+| |+..|.-+++.|+|+...=-|
T Consensus 48 ~ge~Ilk~G~v~KrkGl~~kkR~liLT~~PrL~Yvdp~~~~~KG 91 (151)
T 1w1g_A 48 ENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKG 91 (151)
T ss_dssp TTCCEEEEEEEEEEETTEEEEEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCcEEEEEEEEecccCcceeEEEEEcCCceEEEEcCccccccc
Confidence 4557777777777434444445 556779999999998843333
No 7
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=12.24 E-value=1.6e+02 Score=24.29 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCc-----cccccC--CCCCceeEec
Q psy13896 32 GVERAKRAIRVFLHIRELCLLLAGEQ-----ETQLPL--TDYRSCVQVD 73 (171)
Q Consensus 32 ~~Er~rraIrvffllR~L~l~L~ge~-----etqLPL--t~~~~~Vkv~ 73 (171)
...+|+.||..=++|..|..+-=+.. ||.+.+ +.|..|.|-|
T Consensus 69 Se~kAk~AIem~l~L~SL~~S~y~~E~WTL~dtS~E~~~t~P~~cfKK~ 117 (205)
T 2nnu_A 69 SKNKALQAIELQLTLETIYNSQYSNEKWTLQDVSLEVYLTAPTGCIKKH 117 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTSCCCTTTTSHHHHHSSSTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcCCCCcchhhCCHHHHcCCCcCCCccC
Confidence 46899999999999998876543332 555554 7899999877
No 8
>1r6n_A HPV11 E2 TAD, HPV11 regulatory protein E2, E2 protein; , transcription, replication, transcription, replication; HET: 434; 2.40A {Human papillomavirus type 11} SCOP: b.91.1.1 PDB: 1r6k_A
Probab=11.73 E-value=1.6e+02 Score=24.33 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCc-----cccccC--CCCCceeEec
Q psy13896 32 GVERAKRAIRVFLHIRELCLLLAGEQ-----ETQLPL--TDYRSCVQVD 73 (171)
Q Consensus 32 ~~Er~rraIrvffllR~L~l~L~ge~-----etqLPL--t~~~~~Vkv~ 73 (171)
...+|+.||..=++|..|..+-=+.. ||.+.+ +.|..|.|-|
T Consensus 71 Se~KAk~AIeM~L~L~SL~~S~y~~E~WTL~dtS~E~~~t~P~~cfKK~ 119 (211)
T 1r6n_A 71 SETKGHNAIEMQMHLESLAKTQYGVEPWTLQDTSYEMWLTPPKRCFKKQ 119 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTSCCCTTTTSHHHHTSSSTTSEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcCCCCcchhhCCHHHHcCCCcCCCccC
Confidence 46899999999999998876543332 555554 7899999877
No 9
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=11.64 E-value=96 Score=22.00 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=10.5
Q ss_pred chhHHHHHHHHHH
Q psy13896 31 GGVERAKRAIRVF 43 (171)
Q Consensus 31 g~~Er~rraIrvf 43 (171)
+=|||+||||-|.
T Consensus 35 ~MVEKTrRsltvL 47 (72)
T 1wq6_A 35 DMVEKTRRSLTVL 47 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4589999999764
No 10
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=10.67 E-value=2.2e+02 Score=21.28 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=30.8
Q ss_pred ecCCceeeeecCC-chhHHHHHHHHHHHHHHHHHHHHcCCc--cccccCCC
Q psy13896 18 FSPGIDFTKRLAC-GGVERAKRAIRVFLHIRELCLLLAGEQ--ETQLPLTD 65 (171)
Q Consensus 18 ~~pgi~f~kRLPc-g~~Er~rraIrvffllR~L~l~L~ge~--etqLPLt~ 65 (171)
.-|||.|-..||| ++.+++=..| .=..++|+.+|.|+- |.+-|||.
T Consensus 74 ~t~gvtlfl~lP~~~~~~~~F~~M--~~~A~~lA~~L~g~llDd~r~~lt~ 122 (140)
T 1f46_A 74 TTPGVTIFMQVPSYGDELQLFKLM--LQSAQHIADEVGGVVLDDQRRMMTP 122 (140)
T ss_dssp EESEEEEEEEECSSSCHHHHHHHH--HHHHHHHHHHHTCEEECTTSCBCCH
T ss_pred ccCcEEEEEECCCCCcHHHHHHHH--HHHHHHHHHHcCCEEECCCCCCCCH
Confidence 3469999999999 4444432222 224588999998885 55667653
Done!