Query psy13896
Match_columns 171
No_of_seqs 55 out of 57
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 23:12:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13896.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13896hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cvea2 d.58.11.2 (A:125-191) 24.1 18 0.0013 23.6 1.9 32 8-39 24-55 (67)
2 d2f1la1 b.41.1.4 (A:101-175) 1 21.0 15 0.0011 23.1 1.0 33 81-115 4-39 (75)
3 d1mkea1 b.55.1.4 (A:31-144) Ac 17.2 1.4E+02 0.01 19.8 6.4 27 102-128 13-42 (114)
4 d1r6na_ b.91.1.1 (A:) E2 regul 17.0 46 0.0034 25.4 3.2 42 32-73 65-113 (196)
5 d1hjra_ c.55.3.6 (A:) RuvC res 16.1 32 0.0023 24.3 1.9 17 111-127 5-22 (158)
6 d2nnua1 b.91.1.1 (A:1-200) E2 12.8 71 0.0052 24.3 3.3 42 32-73 65-113 (200)
7 d1tueb_ b.91.1.1 (B:) E2 regul 12.3 64 0.0047 24.5 2.9 42 32-73 70-118 (194)
8 d1zunb2 b.44.1.1 (B:330-434) S 11.9 60 0.0044 21.3 2.3 36 81-124 60-104 (105)
9 d2i9ia1 c.51.6.1 (A:51-271) Hy 10.3 3.4E+02 0.025 20.7 7.0 15 114-128 110-125 (221)
10 d1xrsb2 d.230.4.1 (B:33-84) D- 9.9 95 0.0069 19.2 2.5 17 22-40 4-20 (52)
No 1
>d2cvea2 d.58.11.2 (A:125-191) Hypothetical protein TTHA1053, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.06 E-value=18 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=25.5
Q ss_pred hccccceeeeecCCceeeeecCCchhHHHHHH
Q psy13896 8 SRYSKKISIFFSPGIDFTKRLACGGVERAKRA 39 (171)
Q Consensus 8 ~~~~~~~sil~~pgi~f~kRLPcg~~Er~rra 39 (171)
.|-++.-.-.+|.|+.|..|||--+-|---||
T Consensus 24 ar~l~aee~y~pegvrfal~lpkp~~eg~l~a 55 (67)
T d2cvea2 24 ARALKAEETYTPEGVRFALLLPKPEREGFLRA 55 (67)
T ss_dssp HTTCCEEEEEETTEEEEEEEEEHHHHHHHHHH
T ss_pred HHhhhhhhccCccceEEEEEcCCCCcccHHHH
Confidence 46777778899999999999997777764443
No 2
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.03 E-value=15 Score=23.15 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=18.5
Q ss_pred CceeEEEEEeCCCCCceE---EEEEEEeeeEEEEEecC
Q psy13896 81 SDLIGCHVVRGGAGGSRV---HRFLVVNDVQVILVEPD 115 (171)
Q Consensus 81 sdLI~C~Vv~~~~~~~~~---~RfLvvd~~QliLVEPD 115 (171)
+|||+|.|+..+ +... .-..-.-...++.|++.
T Consensus 4 ~dLiG~~V~d~~--g~~lG~V~~v~~~ga~dll~I~~~ 39 (75)
T d2f1la1 4 HQLEGLKVIDQG--RQLLGVIDHLLETGANDVMVVKPC 39 (75)
T ss_dssp HHHTTCEEEETT--SCEEEEEEEEECCSSSCEEEEECC
T ss_pred HHcCCCEEEeCC--CCEEEEEEEEcccCCccEEEEEeC
Confidence 578888888766 4433 23333333455556553
No 3
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.21 E-value=1.4e+02 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=18.2
Q ss_pred EEEeeeEEEEEecCC---ccceEEEEEEee
Q psy13896 102 LVVNDVQVILVEPDT---RVGWGVVKLAGE 128 (171)
Q Consensus 102 Lvvd~~QliLVEPDs---~lGwGVVkfvg~ 128 (171)
|+.-..|++..+|++ ..|-|++-|+=+
T Consensus 13 latavv~lY~~~~~~~W~~~~tG~v~~v~d 42 (114)
T d1mkea1 13 MSSAVVQLYAADRNCMWSKKCSGVACLVKD 42 (114)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEEEEEE
T ss_pred eeeEEEEEEEECCCCeEEECCceEEEEEEE
Confidence 444558888889987 445577666555
No 4
>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain {Human papillomavirus type 11 [TaxId: 10580]}
Probab=17.02 E-value=46 Score=25.39 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HcCCc----ccccc--CCCCCceeEec
Q psy13896 32 GVERAKRAIRVFLHIRELCLL-LAGEQ----ETQLP--LTDYRSCVQVD 73 (171)
Q Consensus 32 ~~Er~rraIrvffllR~L~l~-L~ge~----etqLP--Lt~~~~~Vkv~ 73 (171)
...+|+.||..-++|..|..+ ...|+ ||.+. ++.|..|+|-|
T Consensus 65 Se~kAk~AIemql~L~SL~~S~y~~E~WTL~dtS~E~~~~~P~~cfKK~ 113 (196)
T d1r6na_ 65 SETKGHNAIEMQMHLESLAKTQYGVEPWTLQDTSYEMWLTPPKRCFKKQ 113 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTSCCCTTTTSHHHHTSSSTTSEEEE
T ss_pred hHHHHHHHHHHHHHHHHhccCcccCCCCchhhCCHHHHcCCCCCceeeC
Confidence 468999999999999998876 44443 55554 48899999776
No 5
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=16.10 E-value=32 Score=24.25 Aligned_cols=17 Identities=29% Similarity=0.788 Sum_probs=14.1
Q ss_pred EEecCC-ccceEEEEEEe
Q psy13896 111 LVEPDT-RVGWGVVKLAG 127 (171)
Q Consensus 111 LVEPDs-~lGwGVVkfvg 127 (171)
=++|-+ +.||||+..-|
T Consensus 5 GIDPGl~~~G~avid~~~ 22 (158)
T d1hjra_ 5 GIDPGSRVTGYGVIRQVG 22 (158)
T ss_dssp EEECCSSEEEEEEEEEET
T ss_pred EEccCCCceEEEEEEeeC
Confidence 378987 89999998766
No 6
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
Probab=12.76 E-value=71 Score=24.33 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCc-----cccccC--CCCCceeEec
Q psy13896 32 GVERAKRAIRVFLHIRELCLLLAGEQ-----ETQLPL--TDYRSCVQVD 73 (171)
Q Consensus 32 ~~Er~rraIrvffllR~L~l~L~ge~-----etqLPL--t~~~~~Vkv~ 73 (171)
...+|+.||..-++|..|..+-=+.. ||.+.+ +.|..|+|-|
T Consensus 65 Se~kAk~AIem~L~L~SL~~S~y~~E~WTL~dtS~E~~~t~P~~cfKK~ 113 (200)
T d2nnua1 65 SKNKALQAIELQLTLETIYNSQYSNEKWTLQDVSLEVYLTAPTGCIKKH 113 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTSCCCTTTTSHHHHHSSSTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcCCCCCcchhCCHHHhcCCCCCceeEC
Confidence 45899999999999998865543332 455544 8899999877
No 7
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=12.31 E-value=64 Score=24.51 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HcCCc----ccccc--CCCCCceeEec
Q psy13896 32 GVERAKRAIRVFLHIRELCLL-LAGEQ----ETQLP--LTDYRSCVQVD 73 (171)
Q Consensus 32 ~~Er~rraIrvffllR~L~l~-L~ge~----etqLP--Lt~~~~~Vkv~ 73 (171)
...+|+.||..-++|..|..+ ...|+ ||.+. ++.|..|+|-|
T Consensus 70 Se~kAk~AIemql~L~SL~~S~y~~E~WTL~dtS~E~~~~~P~~cfKK~ 118 (194)
T d1tueb_ 70 SKSKAHKAIELQMALQGLAQSAYKTEDWTLQDTCEELWNTEPTHCFKKG 118 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTTSCCCTTTTCHHHHTSSSTTSEEEE
T ss_pred hHHHHHHHHHHHHHHHHhccCcccCCCCchhhCCHHHHcCCCcccCccC
Confidence 457999999999999888764 33442 55554 48899999887
No 8
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=11.88 E-value=60 Score=21.30 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=22.9
Q ss_pred CceeEEEEEeCCCCCceEEEEEEEeee-------EEEEEecCC--ccceEEEE
Q psy13896 81 SDLIGCHVVRGGAGGSRVHRFLVVNDV-------QVILVEPDT--RVGWGVVK 124 (171)
Q Consensus 81 sdLI~C~Vv~~~~~~~~~~RfLvvd~~-------QliLVEPDs--~lGwGVVk 124 (171)
+|+--|+..+.. =+.+|.+ ++||+||.+ ++|-|++.
T Consensus 60 Ndi~~v~i~~~~--------~i~~d~y~~n~~~G~fiLiD~~~~~TvaaG~I~ 104 (105)
T d1zunb2 60 NEIGRVKVSLDA--------PIALDGYSSNRTTGAFIVIDRLTNGTVAAGMII 104 (105)
T ss_dssp TCEEEEEEEEEE--------EEECCCTTTCTTTTEEEEECTTTCCEEEEEEEE
T ss_pred ccEEEEEEEECC--------ccccCccccCcCceeEEEEECCCCCEEEEEEEE
Confidence 456556554433 4555544 678888876 88888763
No 9
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492 {Helicobacter pylori [TaxId: 210]}
Probab=10.32 E-value=3.4e+02 Score=20.72 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=9.8
Q ss_pred cCC-ccceEEEEEEee
Q psy13896 114 PDT-RVGWGVVKLAGE 128 (171)
Q Consensus 114 PDs-~lGwGVVkfvg~ 128 (171)
||. .++-||-+-.|+
T Consensus 110 ~~~pn~~t~iD~SsG~ 125 (221)
T d2i9ia1 110 PNNPNLDTLVDQSSGS 125 (221)
T ss_dssp TTCTTEEEEEEEEEEE
T ss_pred CCCCCccccccccCce
Confidence 344 666677777777
No 10
>d1xrsb2 d.230.4.1 (B:33-84) D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=9.87 E-value=95 Score=19.16 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=13.3
Q ss_pred ceeeeecCCchhHHHHHHH
Q psy13896 22 IDFTKRLACGGVERAKRAI 40 (171)
Q Consensus 22 i~f~kRLPcg~~Er~rraI 40 (171)
+.|+..+|+| |+++.|-
T Consensus 4 lSFTLPVp~g--~~A~eAA 20 (52)
T d1xrsb2 4 LSFTLPLKNN--ERSAEAA 20 (52)
T ss_dssp EEEEESSCSS--HHHHHHH
T ss_pred EEEEeeCCCC--hHHHHHH
Confidence 4789999999 6777764
Done!