RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13896
         (171 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.020
 Identities = 38/211 (18%), Positives = 54/211 (25%), Gaps = 95/211 (45%)

Query: 34  ERAKRAIRVFLHI--RELCLLLAGEQET----QLPLTDYRSCV----------------- 70
              ++AI V   I  R  C       E      LP +     +                 
Sbjct: 294 VSVRKAITVLFFIGVR--C------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345

Query: 71  --QVDSVLDLTNSDL-------IG------CHVVRG-------------------GAGGS 96
             QV   ++ TNS L       I         VV G                   G   S
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405

Query: 97  RV----------HRFLVV---------NDVQVILVEPDTR--VGWGVVKLAGEYPGVGCG 135
           R+          +RFL V              ++ +   +  V +    +    P V   
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ--IP-VYDT 462

Query: 136 AGGS--RVHRFLVVND-VQVILVEPDTRVGW 163
             GS  RV    +    V  I+  P   V W
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLP---VKW 490


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 30.6 bits (68), Expect = 0.26
 Identities = 33/197 (16%), Positives = 54/197 (27%), Gaps = 69/197 (35%)

Query: 9   RYSKKISIFFSPGIDFTKRLACGGVERAKRAI---RVFLHI----------REL--CLLL 53
           +Y   +S+F      F     C  V+   ++I       HI            L   LL 
Sbjct: 17  QYKDILSVFED---AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 54  AGEQ-----------------------ETQLPLTDYRSCVQVDSVLDLTNSDLIGCHVVR 90
             E+                       E + P    R  ++    L   N      +V  
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-- 131

Query: 91  GGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVGCG----AGGSRVHRFLV 146
                SR+  +L +      L+E   R    V+ + G    +G G    A         V
Sbjct: 132 -----SRLQPYLKLRQA---LLE--LRPAKNVL-IDG---VLGSGKTWVAL-------DV 170

Query: 147 VNDVQVILVEPDTRVGW 163
               +V       ++ W
Sbjct: 171 CLSYKVQCKMDF-KIFW 186


>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
           interactions, TPR, super-helix,; 2.9A {Homo sapiens}
           SCOP: a.118.8.1 d.159.1.3
          Length = 477

 Score = 28.5 bits (64), Expect = 1.3
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 114 PDTRVGWGVVKLAGEYPGVGCGAGGSRVHRFLVVNDVQVI 153
           P  + G  + K      GV C  G      FL  N++  I
Sbjct: 367 PQPQNGRSISK-----RGVSCQFGPDVTKAFLEENNLDYI 401


>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
           structural genomics, PSI-2, protein structu initiative;
           2.30A {Saccharomyces cerevisiae}
          Length = 335

 Score = 27.2 bits (61), Expect = 2.4
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 114 PDTRVGWGVVKLAGEYPGVGCGAGGSRVHRFLVVNDVQVI 153
           P    G G  +      G+G   G     RFL  N ++ I
Sbjct: 218 PQEANGMGPSQ-----RGLGHAFGPDITDRFLRNNKLRKI 252


>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
           drug design, cytoplasm, hydrolase, iron, manganese,
           metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
           PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
           3h68_A* 3h69_A* 1s95_A
          Length = 315

 Score = 27.2 bits (61), Expect = 2.5
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 5/40 (12%)

Query: 114 PDTRVGWGVVKLAGEYPGVGCGAGGSRVHRFLVVNDVQVI 153
           P  + G  + K      GV C  G      FL  N++  I
Sbjct: 214 PQPQNGRSISK-----RGVSCQFGPDVTKAFLEENNLDYI 248


>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices
           fold, chroloplast, TRAN isoprenoid biosynthetic process;
           2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
          Length = 348

 Score = 25.8 bits (57), Expect = 9.4
 Identities = 8/25 (32%), Positives = 9/25 (36%)

Query: 19  SPGIDFTKRLACGGVERAKRAIRVF 43
           S GI   + LA      A  AI   
Sbjct: 297 SKGIQRARELAMEHANLAAAAIGSL 321


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.144    0.440 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,706,035
Number of extensions: 163002
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 17
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.7 bits)