RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13896
         (171 letters)



>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 298

 Score = 27.5 bits (60), Expect = 0.94
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 132 VGCGAGGSRVHRFLVVNDVQVILVEPDTRVG 162
           VG G  G+     L   + +V+++E    +G
Sbjct: 7   VGSGLFGAVCANELKKLNKKVLVIEKRNHIG 37



 Score = 25.1 bits (54), Expect = 4.6
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 88  VVRGGAGGSRVHRFLVVNDVQVILVEPDTRVG 119
           +V  G  G+     L   + +V+++E    +G
Sbjct: 6   IVGSGLFGAVCANELKKLNKKVLVIEKRNHIG 37


>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
           middle domain {Methylophilus methylotrophus, w3a1
           [TaxId: 17]}
          Length = 233

 Score = 27.1 bits (58), Expect = 1.2
 Identities = 17/144 (11%), Positives = 32/144 (22%)

Query: 22  IDFTKRLACGGVERAKRAIRVFLHIRELCLLLAGEQETQLPLTDYRSCVQVDSVLDLTNS 81
                    GG      A+               +    L              +   + 
Sbjct: 76  HLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDV 135

Query: 82  DLIGCHVVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVGCGAGGSRV 141
              G   V    G S    +  +   +    E D +  + +               G RV
Sbjct: 136 LQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRV 195

Query: 142 HRFLVVNDVQVILVEPDTRVGWGV 165
            R +   + Q+ +      + WG 
Sbjct: 196 AREIEEANPQIAIPYKRETIAWGT 219


>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
           pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
          Length = 370

 Score = 25.9 bits (55), Expect = 3.2
 Identities = 14/56 (25%), Positives = 18/56 (32%)

Query: 88  VVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVGCGAGGSRVHR 143
           +V  G  G      L     QV ++E   R G  V     E  G     G  R+  
Sbjct: 35  IVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPE 90



 Score = 24.3 bits (51), Expect = 9.1
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 132 VGCGAGGSRVHRFLVVNDVQVILVEPDTRVG 162
           VG G  G      L     QV ++E   R G
Sbjct: 36  VGAGMAGLSAAYVLAGAGHQVTVLEASERPG 66


>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
           N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 314

 Score = 25.1 bits (54), Expect = 4.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 132 VGCGAGGSRVHRFLVVNDVQVILVEPDTRVG 162
           VG G  G+ + R L     QV +++    +G
Sbjct: 8   VGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG 38


>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 25.1 bits (53), Expect = 5.2
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 88  VVRGGAGGSRVHRFLVVNDVQVILVEPDTRVGWGVVKLAGEYPGVGCGAGGSRVH 142
           VV GG  G    + L  + + V+++E   RVG G               GGS V 
Sbjct: 4   VVGGGISGMAAAKLLHDSGLNVVVLEARDRVG-GRTYTLRNQKVKYVDLGGSYVG 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.440 

Gapped
Lambda     K      H
   0.267   0.0397    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 650,129
Number of extensions: 28649
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 12
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)