BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13897
         (86 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2KHT3|CL16A_HUMAN Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=2 SV=2
          Length = 1053

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 54/69 (78%)

Query: 8   ILSDAHLAAIVNAKEESTSLLRNFYKSEDIFLDMFQFEYDQIQKKPLNVEYLMMDSKMLL 67
           I+ D HLA +  A+EES  L+R+FYK EDIFLDMF+ EY  +  KP+NVEYLMMD+ +LL
Sbjct: 580 IMKDVHLACLEGAREESVHLVRHFYKGEDIFLDMFEDEYRSMTMKPMNVEYLMMDASILL 639

Query: 68  PPAGTPLTG 76
           PP GTPLTG
Sbjct: 640 PPTGTPLTG 648


>sp|Q80U30|CL16A_MOUSE Protein CLEC16A OS=Mus musculus GN=Clec16a PE=2 SV=2
          Length = 1036

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/69 (60%), Positives = 54/69 (78%)

Query: 8   ILSDAHLAAIVNAKEESTSLLRNFYKSEDIFLDMFQFEYDQIQKKPLNVEYLMMDSKMLL 67
           ++ D HLA +  A+EES  L+R+FYK E+IFLDMF+ EY  +  KP+NVEYLMMD+ +LL
Sbjct: 564 VIKDVHLACLEGAREESVHLVRHFYKGEEIFLDMFEDEYRSMTIKPMNVEYLMMDASILL 623

Query: 68  PPAGTPLTG 76
           PP GTPLTG
Sbjct: 624 PPTGTPLTG 632


>sp|P46578|GOP1_CAEEL Uncharacterized protein gop-1 OS=Caenorhabditis elegans GN=gop-1
           PE=2 SV=1
          Length = 892

 Score = 35.4 bits (80), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 26  SLLRNFYKSEDIFLDMFQFEYDQIQKKPLNVEYLMMDSKMLLPPAGTPLT 75
           S +  +   E++FL+ F+ EY + +   +N +  ++  +MLLPPA TPL+
Sbjct: 579 SSIGQYVNGENLFLEWFEDEYAEFEVNHVNFD--IIGHEMLLPPAATPLS 626


>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1
          Length = 3660

 Score = 29.6 bits (65), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 11   DAHLAAIVNAKEESTSLLRNFYKSEDIF-----LDMFQFEYDQIQKKPLNV 56
            DAH     N  E    +LR+   SED       LD   F + +++KK LN+
Sbjct: 2743 DAHTDIFHNLDENGQKILRSLEGSEDAVLLQRRLDNMNFRWSELRKKSLNI 2793


>sp|A2V9Z4|ALBU_MACFA Serum albumin OS=Macaca fascicularis GN=ALB PE=2 SV=1
          Length = 608

 Score = 29.3 bits (64), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 4   CFHSILSD---AHLAAIVNAKEESTSLLRNFYKSEDIFLDMFQFEY 46
           C   + +D   A L ++     ES  + +N+ +++D+FL MF +EY
Sbjct: 313 CLAEVENDEMPADLPSLAADYVESKDVCKNYAEAKDVFLGMFLYEY 358


>sp|Q28522|ALBU_MACMU Serum albumin (Fragment) OS=Macaca mulatta GN=ALB PE=2 SV=1
          Length = 600

 Score = 29.3 bits (64), Expect = 8.2,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 12  AHLAAIVNAKEESTSLLRNFYKSEDIFLDMFQFEY 46
           A L ++     ES  + +N+ +++D+FL MF +EY
Sbjct: 316 ADLPSLAADYVESKDVCKNYAEAKDVFLGMFLYEY 350


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,195,727
Number of Sequences: 539616
Number of extensions: 999408
Number of successful extensions: 2659
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2650
Number of HSP's gapped (non-prelim): 10
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)