Query psy13897
Match_columns 86
No_of_seqs 35 out of 37
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 23:13:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2219|consensus 99.9 6.9E-26 1.5E-30 193.2 5.9 77 8-86 544-620 (864)
2 PRK09480 slmA division inhibit 36.4 45 0.00097 22.4 2.9 27 23-49 42-69 (194)
3 PRK13777 transcriptional regul 31.5 1.2E+02 0.0025 22.4 4.6 30 20-51 143-172 (185)
4 PF10135 Rod-binding: Rod bind 30.5 44 0.00096 19.1 1.8 15 34-48 18-32 (49)
5 KOG4330|consensus 28.7 1.3E+02 0.0027 23.4 4.4 58 26-84 72-132 (206)
6 PF09452 Mvb12: ESCRT-I subuni 28.3 1.9E+02 0.0041 19.8 4.8 30 33-68 59-88 (91)
7 PF06149 DUF969: Protein of un 26.9 85 0.0019 24.5 3.3 33 6-40 135-167 (218)
8 COG2020 STE14 Putative protein 26.3 2.5E+02 0.0054 20.2 5.8 22 32-53 157-178 (187)
9 PF15466 DUF4635: Domain of un 25.8 99 0.0022 22.5 3.3 30 22-51 82-112 (135)
10 PF04783 DUF630: Protein of un 25.2 1.3E+02 0.0029 18.9 3.4 26 9-35 34-59 (60)
11 smart00515 eIF5C Domain at the 22.8 1.6E+02 0.0034 18.3 3.4 23 23-45 34-60 (83)
12 PRK15008 HTH-type transcriptio 22.0 1.2E+02 0.0026 21.3 3.1 30 20-49 47-77 (212)
13 PF08916 Phe_ZIP: Phenylalanin 21.3 75 0.0016 20.0 1.7 14 35-48 46-59 (59)
14 COG5132 BUD31 Cell cycle contr 21.0 73 0.0016 23.4 1.8 19 36-54 20-38 (146)
15 PF08970 Sda: Sporulation inhi 20.7 2.1E+02 0.0045 17.2 3.8 24 20-48 12-35 (46)
No 1
>KOG2219|consensus
Probab=99.92 E-value=6.9e-26 Score=193.22 Aligned_cols=77 Identities=40% Similarity=0.627 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhHHHHHHhhhCCcchhhhhhccccccCCCCCCCCCCCCCccCCCC
Q psy13897 8 ILSDAHLAAIVNAKEESTSLLRNFYKSEDIFLDMFQFEYDQIQKKPLNVEYLMMDSKMLLPPAGTPLTGNNPLTALTVS 86 (86)
Q Consensus 8 ~l~d~h~~~l~~ar~~s~~~Lr~fyk~eeiFLdmFEDEy~~~~~kplnve~L~mDsslLLPPt~TPLTGI~f~KRLP~~ 86 (86)
|+.+.+.+.+++||.+++..+|.|||+|++|||||||||++|..+ |||++|||+++||||||||+|||+|+|||||.
T Consensus 544 ci~~slt~~l~g~r~~ll~~v~~~~~ge~iFld~fedey~~~~~~--nvef~~~~~~illppt~tpltgld~~krlP~g 620 (864)
T KOG2219|consen 544 CINTSLTRLLFGARPDLLIRVRLFYKGEDIFLDGFEDEYQEMIYP--NVEFLDMDHEILLPPTGTPLTGLDFSKRLPCG 620 (864)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHHhhcccccC--CCchhhcccceecCCCCCCccCceeeccCCCc
Confidence 455788899999999999999999999999999999999999877 99999999999999999999999999999984
No 2
>PRK09480 slmA division inhibitor protein; Provisional
Probab=36.45 E-value=45 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|-..+..||++ +++|+++++.-.+++
T Consensus 42 vs~gt~Y~~F~~K~~L~~~v~~~~~~~~ 69 (194)
T PRK09480 42 VSEAALYRHFPSKARMFEGLIEFIEESL 69 (194)
T ss_pred CCHhHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344557777776 888888876544443
No 3
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=31.47 E-value=1.2e+02 Score=22.37 Aligned_cols=30 Identities=27% Similarity=0.588 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhHHHHHHhhh
Q psy13897 20 AKEESTSLLRNFYKSEDIFLDMFQFEYDQIQK 51 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~eeiFLdmFEDEy~~~~~ 51 (86)
-..+.+..|++-|..+ |.|+||..+..+..
T Consensus 143 e~~~l~~ll~~iy~~~--~~~~~~~~~~~~~~ 172 (185)
T PRK13777 143 EFIELMAIVRNIYGDD--FIDIFEKSLENIEE 172 (185)
T ss_pred HHHHHHHHHHHHhCcH--HHHHHHHHHHHHHH
Confidence 4556777788766554 99999988777653
No 4
>PF10135 Rod-binding: Rod binding protein; InterPro: IPR019301 The N-terminal domain of the FlgJ protein is directly involved in flagellar rod assembly, while the adjacent C-terminal domain is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring [].
Probab=30.53 E-value=44 Score=19.13 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.4
Q ss_pred hhhHHHhhhHHHHHH
Q psy13897 34 SEDIFLDMFQFEYDQ 48 (86)
Q Consensus 34 ~eeiFLdmFEDEy~~ 48 (86)
++++|=+||-+||.+
T Consensus 18 ~~~~~~~m~d~~la~ 32 (49)
T PF10135_consen 18 GEDMFQSMLDQQLAK 32 (49)
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999999976
No 5
>KOG4330|consensus
Probab=28.66 E-value=1.3e+02 Score=23.42 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=40.2
Q ss_pred HHHHHHhhhhhHHHhhhHHHHHHhhh-CCcchhhhhhccccccC--CCCCCCCCCCCCccCC
Q psy13897 26 SLLRNFYKSEDIFLDMFQFEYDQIQK-KPLNVEYLMMDSKMLLP--PAGTPLTGNNPLTALT 84 (86)
Q Consensus 26 ~~Lr~fyk~eeiFLdmFEDEy~~~~~-kplnve~L~mDsslLLP--Pt~TPLTGI~f~KRLP 84 (86)
.+++.+...|.||+.+ -.||..+++ +.+-+..=-.|++---- |.+.|++|=+=-.+=|
T Consensus 72 ~~~~~~ls~e~~~~~i-kqei~R~~k~r~l~~~~~~~e~~~~Sea~~~ss~~sgp~Spg~~~ 132 (206)
T KOG4330|consen 72 NQLKTYLSPEQINLNI-KQEIKRSQKRRHLEDQRGQGESSCYSEAQPHSSPLSGPDSPGEAP 132 (206)
T ss_pred hhhhhcCCHHHHHHHH-HHHHHHHHhhhhchhhhcccccccccccCCCCCcccCCCCCCCCC
Confidence 3578888899999999 899999986 67766554333322222 7888898876554443
No 6
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=28.34 E-value=1.9e+02 Score=19.81 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=8.2
Q ss_pred hhhhHHHhhhHHHHHHhhhCCcchhhhhhccccccC
Q psy13897 33 KSEDIFLDMFQFEYDQIQKKPLNVEYLMMDSKMLLP 68 (86)
Q Consensus 33 k~eeiFLdmFEDEy~~~~~kplnve~L~mDsslLLP 68 (86)
++.+-|=+|+++-| +++||-. |+|+++|-|
T Consensus 59 ~~~k~Fd~WY~e~y--Ls~KPpG----m~~~~vLSP 88 (91)
T PF09452_consen 59 KSSKEFDQWYKEKY--LSKKPPG----MVESSVLSP 88 (91)
T ss_dssp THHHHHHHHHHHHS----------------------
T ss_pred HhcchHHHHHHHHH--hccCCCC----cccCcccCC
Confidence 35666766655544 6678887 788888876
No 7
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins.
Probab=26.85 E-value=85 Score=24.47 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=25.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q psy13897 6 HSILSDAHLAAIVNAKEESTSLLRNFYKSEDIFLD 40 (86)
Q Consensus 6 ~~~l~d~h~~~l~~ar~~s~~~Lr~fyk~eeiFLd 40 (86)
|..+++++...+. |...|+++.-+|| ++++|.-
T Consensus 135 ~g~l~e~~~e~ik-a~aAA~eN~gnFF-gqniFva 167 (218)
T PF06149_consen 135 YGELSEKDREKIK-AMAAAAENYGNFF-GQNIFVA 167 (218)
T ss_pred cCCCCHhHHHHHH-HHHHHHHHHHHHH-hHHHHHh
Confidence 3456777777765 8899999999976 7888863
No 8
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=2.5e+02 Score=20.16 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.0
Q ss_pred hhhhhHHHhhhHHHHHHhhhCC
Q psy13897 32 YKSEDIFLDMFQFEYDQIQKKP 53 (86)
Q Consensus 32 yk~eeiFLdmFEDEy~~~~~kp 53 (86)
.+.|..-.+-|.|||+++.+|-
T Consensus 157 ~~EEr~L~~~fg~~Y~~Y~~rV 178 (187)
T COG2020 157 REEERYLRAEFGDEYREYRKRV 178 (187)
T ss_pred hHHHHHHHHHhhHHHHHHHHhC
Confidence 4457777789999999987653
No 9
>PF15466 DUF4635: Domain of unknown function (DUF4635)
Probab=25.75 E-value=99 Score=22.53 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhh-hhhHHHhhhHHHHHHhhh
Q psy13897 22 EESTSLLRNFYK-SEDIFLDMFQFEYDQIQK 51 (86)
Q Consensus 22 ~~s~~~Lr~fyk-~eeiFLdmFEDEy~~~~~ 51 (86)
++-+..+|++.| +-.+|||=.|.|.|+++.
T Consensus 82 eEPik~~r~WLkenLhvflEkLE~EvreLEQ 112 (135)
T PF15466_consen 82 EEPIKAIRNWLKENLHVFLEKLEKEVRELEQ 112 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999998 489999999999999864
No 10
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=25.18 E-value=1.3e+02 Score=18.86 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13897 9 LSDAHLAAIVNAKEESTSLLRNFYKSE 35 (86)
Q Consensus 9 l~d~h~~~l~~ar~~s~~~Lr~fyk~e 35 (86)
+-+.|.+.+.+-|..... |++|..+|
T Consensus 34 lAaaH~aY~~SLr~~g~a-L~~F~~~e 59 (60)
T PF04783_consen 34 LAAAHAAYIQSLRNVGAA-LRQFAEGE 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence 456777777766666666 77776554
No 11
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5.
Probab=22.79 E-value=1.6e+02 Score=18.26 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=17.4
Q ss_pred HHHHHHHHHhh----hhhHHHhhhHHH
Q psy13897 23 ESTSLLRNFYK----SEDIFLDMFQFE 45 (86)
Q Consensus 23 ~s~~~Lr~fyk----~eeiFLdmFEDE 45 (86)
.....++.+|. +||.|+.|+++.
T Consensus 34 ~~~~il~~LYd~dileEe~il~W~~~~ 60 (83)
T smart00515 34 LLPKILKSLYDADILEEEAILKWYEKA 60 (83)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHcC
Confidence 34456778887 489999999875
No 12
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=22.03 E-value=1.2e+02 Score=21.28 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|...++.||++ |++|+++++.-+..+
T Consensus 47 ~aGvs~gtiY~hF~sKe~L~~a~~~~~~~~~ 77 (212)
T PRK15008 47 LAGVSKTNLLYYFPSKEALYIAVLRQILDIW 77 (212)
T ss_pred HhCcCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334455667888886 888888887655544
No 13
>PF08916 Phe_ZIP: Phenylalanine zipper; InterPro: IPR015012 The phenylalanine zipper consists of aromatic side chains from ten phenylalanine residues that are stacked within a hydrophobic core. This zipper mediates dimerisation of various proteins, such as APS, SH2-B and Lnk []. ; GO: 0004871 signal transducer activity, 0035556 intracellular signal transduction; PDB: 1Q2H_B.
Probab=21.32 E-value=75 Score=20.01 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=11.1
Q ss_pred hhHHHhhhHHHHHH
Q psy13897 35 EDIFLDMFQFEYDQ 48 (86)
Q Consensus 35 eeiFLdmFEDEy~~ 48 (86)
-|.|++-||.|+++
T Consensus 46 ~d~F~~hF~~E~~~ 59 (59)
T PF08916_consen 46 ADLFQEHFENEVRR 59 (59)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 46789999998864
No 14
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=20.98 E-value=73 Score=23.40 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.4
Q ss_pred hHHHhhhHHHHHHhhhCCc
Q psy13897 36 DIFLDMFQFEYDQIQKKPL 54 (86)
Q Consensus 36 eiFLdmFEDEy~~~~~kpl 54 (86)
+-||+=||+|.|+.++.|+
T Consensus 20 ~ptL~~fe~~mRqaen~~~ 38 (146)
T COG5132 20 RPTLEKFEAEMRQAENAPL 38 (146)
T ss_pred cchHHHHHHHHHHHhcCCC
Confidence 4589999999999998776
No 15
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=20.74 E-value=2.1e+02 Score=17.22 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhHHHHHH
Q psy13897 20 AKEESTSLLRNFYKSEDIFLDMFQFEYDQ 48 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~eeiFLdmFEDEy~~ 48 (86)
|+..|.. ++-+.=|+++.++|...
T Consensus 12 sY~~A~e-----l~L~~dFI~Ll~~Ei~r 35 (46)
T PF08970_consen 12 SYHKAIE-----LNLDPDFIRLLEEEIQR 35 (46)
T ss_dssp HHHHHHH-----TT--HHHHHHHHHHHHH
T ss_pred HHHHHHH-----hCCCHHHHHHHHHHHHH
Confidence 5555555 66789999999999544
Done!