Query psy13897
Match_columns 86
No_of_seqs 35 out of 37
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 23:13:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3anp_C Transcriptional repress 48.6 15 0.0005 23.4 2.9 30 20-49 38-68 (204)
2 1vi0_A Transcriptional regulat 47.1 15 0.0005 23.7 2.8 30 20-49 37-67 (206)
3 3bhq_A Transcriptional regulat 45.0 18 0.00061 23.2 2.9 30 20-49 41-71 (211)
4 2eh3_A Transcriptional regulat 42.8 19 0.00064 22.4 2.7 30 20-49 31-61 (179)
5 3egq_A TETR family transcripti 42.5 23 0.00078 21.7 3.0 33 20-52 33-66 (170)
6 2oer_A Probable transcriptiona 42.3 19 0.00064 23.3 2.7 29 21-49 54-83 (214)
7 3on4_A Transcriptional regulat 41.2 23 0.00078 21.7 2.9 31 20-50 39-70 (191)
8 3qkx_A Uncharacterized HTH-typ 41.1 23 0.0008 21.6 2.9 31 20-50 37-68 (188)
9 2gen_A Probable transcriptiona 40.9 19 0.00066 22.9 2.6 29 21-49 37-66 (197)
10 2v57_A TETR family transcripti 40.8 21 0.00073 22.1 2.7 30 20-49 41-71 (190)
11 3bqz_B HTH-type transcriptiona 40.7 18 0.00061 22.3 2.3 30 20-49 31-61 (194)
12 3cwb_I Mitochondrial ubiquinol 40.6 19 0.00066 21.4 2.3 22 64-85 14-35 (52)
13 1rkt_A Protein YFIR; transcrip 40.0 15 0.00051 23.5 1.9 30 20-49 41-71 (205)
14 2nx4_A Transcriptional regulat 39.9 22 0.00075 22.6 2.7 30 20-49 39-69 (194)
15 3nym_A Uncharacterized protein 39.7 39 0.0013 23.5 4.1 23 16-45 86-108 (128)
16 2f07_A YVDT; helix-turn-helix, 39.2 21 0.00073 22.7 2.6 30 20-49 39-69 (197)
17 2rek_A Putative TETR-family tr 39.0 23 0.00079 22.2 2.7 28 22-49 46-74 (199)
18 3e7q_A Transcriptional regulat 38.6 26 0.00089 21.8 2.9 31 20-50 43-74 (215)
19 2zb9_A Putative transcriptiona 38.3 21 0.00072 22.7 2.4 31 20-50 52-83 (214)
20 3kz9_A SMCR; transcriptional r 38.0 26 0.00088 21.7 2.7 31 20-50 46-77 (206)
21 2d6y_A Putative TETR family re 37.9 27 0.00092 22.4 2.9 31 20-50 37-68 (202)
22 3vib_A MTRR; helix-turn-helix 37.6 26 0.00088 22.3 2.8 30 20-49 39-69 (210)
23 3loc_A HTH-type transcriptiona 37.5 27 0.00092 21.8 2.8 29 21-49 48-77 (212)
24 2gfn_A HTH-type transcriptiona 37.2 25 0.00087 22.7 2.7 30 20-49 38-68 (209)
25 3knw_A Putative transcriptiona 37.2 26 0.00089 21.9 2.7 30 20-49 43-73 (212)
26 2fbq_A Probable transcriptiona 37.1 27 0.00092 23.0 2.9 29 21-49 37-66 (235)
27 3dew_A Transcriptional regulat 37.0 26 0.00088 21.6 2.6 31 20-50 37-68 (206)
28 2ibd_A Possible transcriptiona 37.0 21 0.0007 22.7 2.2 27 23-49 46-73 (204)
29 2q24_A Putative TETR family tr 36.7 23 0.00079 22.2 2.4 28 23-50 46-74 (194)
30 3pas_A TETR family transcripti 36.5 31 0.0011 21.1 2.9 29 21-49 38-67 (195)
31 3c2b_A Transcriptional regulat 36.3 19 0.00065 22.9 2.0 31 20-50 44-75 (221)
32 3cwr_A Transcriptional regulat 36.3 20 0.00069 22.2 2.0 31 20-50 46-77 (208)
33 4aci_A HTH-type transcriptiona 36.0 31 0.0011 21.3 2.9 31 20-50 43-74 (191)
34 3gzi_A Transcriptional regulat 35.7 25 0.00086 22.2 2.5 29 22-50 48-77 (218)
35 2w53_A Repressor, SMet; antibi 35.7 21 0.00071 22.9 2.1 30 20-49 40-70 (219)
36 2qtq_A Transcriptional regulat 35.2 31 0.0011 21.5 2.8 31 20-50 45-76 (213)
37 2hku_A A putative transcriptio 35.0 32 0.0011 21.9 2.9 29 21-49 49-78 (215)
38 2qwt_A Transcriptional regulat 35.0 23 0.0008 22.5 2.2 27 23-49 44-71 (196)
39 3qbm_A TETR transcriptional re 34.8 20 0.00069 22.1 1.9 29 21-49 37-66 (199)
40 2g7s_A Transcriptional regulat 34.7 27 0.00092 21.3 2.4 28 22-49 39-67 (194)
41 3mnl_A KSTR, transcriptional r 34.6 30 0.001 21.4 2.7 29 22-50 51-80 (203)
42 2np5_A Transcriptional regulat 34.5 30 0.001 22.1 2.7 30 20-49 38-68 (203)
43 3bru_A Regulatory protein, TET 34.1 31 0.001 21.8 2.7 30 20-49 59-89 (222)
44 3lhq_A Acrab operon repressor 33.7 32 0.0011 21.4 2.7 30 20-49 43-73 (220)
45 3jsj_A Putative TETR-family tr 33.6 32 0.0011 21.3 2.7 31 20-50 37-68 (190)
46 3bjb_A Probable transcriptiona 33.4 21 0.00073 23.0 1.9 30 20-49 51-81 (207)
47 2i10_A Putative TETR transcrip 33.2 25 0.00086 22.5 2.2 29 19-47 39-68 (202)
48 3g1o_A Transcriptional regulat 33.2 31 0.0011 22.9 2.7 31 20-50 72-103 (255)
49 3mvp_A TETR/ACRR transcription 33.2 34 0.0012 21.4 2.8 30 21-50 56-86 (217)
50 2pz9_A Putative regulatory pro 32.8 26 0.00089 22.8 2.2 29 22-50 61-90 (226)
51 3frq_A Repressor protein MPHR( 32.6 37 0.0013 21.2 2.9 30 20-49 37-67 (195)
52 2o7t_A Transcriptional regulat 32.6 34 0.0012 21.5 2.7 30 20-49 37-67 (199)
53 2xdn_A HTH-type transcriptiona 32.6 19 0.00065 22.9 1.5 27 23-49 43-70 (210)
54 2hyt_A TETR-family transcripti 32.4 23 0.00078 22.5 1.9 26 24-49 45-71 (197)
55 3g7r_A Putative transcriptiona 32.4 33 0.0011 22.2 2.7 30 20-49 64-94 (221)
56 3bni_A Putative TETR-family tr 31.8 34 0.0012 22.3 2.7 29 21-49 73-102 (229)
57 2id3_A Putative transcriptiona 31.8 33 0.0011 22.3 2.6 31 20-50 69-100 (225)
58 3f0c_A TETR-molecule A, transc 31.6 36 0.0012 21.4 2.7 30 20-49 40-70 (216)
59 3q0w_A HTH-type transcriptiona 31.5 35 0.0012 22.3 2.7 31 20-50 73-104 (236)
60 2g3b_A Putative TETR-family tr 31.2 41 0.0014 21.7 3.0 30 20-49 32-62 (208)
61 3lwj_A Putative TETR-family tr 31.1 34 0.0012 21.2 2.5 31 20-50 41-72 (202)
62 3b81_A Transcriptional regulat 30.4 26 0.0009 21.7 1.9 31 20-50 40-71 (203)
63 2zcm_A Biofilm operon icaabcd 30.4 32 0.0011 21.4 2.3 29 21-49 37-66 (192)
64 3col_A Putative transcription 30.3 23 0.0008 21.7 1.6 30 20-49 39-69 (196)
65 3npi_A TETR family regulatory 29.8 35 0.0012 22.5 2.5 29 21-49 48-77 (251)
66 3eup_A Transcriptional regulat 29.2 22 0.00077 22.0 1.4 28 22-49 42-70 (204)
67 1ui5_A A-factor receptor homol 29.0 44 0.0015 21.6 2.9 29 21-49 39-68 (215)
68 3rh2_A Hypothetical TETR-like 28.9 42 0.0014 21.2 2.7 31 20-50 32-63 (212)
69 3ppb_A Putative TETR family tr 28.7 48 0.0016 20.2 2.9 28 22-49 40-68 (195)
70 3rd3_A Probable transcriptiona 28.7 22 0.00077 21.8 1.3 29 21-49 40-69 (197)
71 3nxc_A HTH-type protein SLMA; 28.2 26 0.00089 21.9 1.6 26 24-49 58-84 (212)
72 1pb6_A Hypothetical transcript 27.9 37 0.0013 21.1 2.3 28 22-49 49-77 (212)
73 2zcx_A SCO7815, TETR-family tr 27.8 44 0.0015 22.1 2.8 30 20-49 52-82 (231)
74 3dcf_A Transcriptional regulat 27.8 46 0.0016 20.7 2.7 28 22-49 62-90 (218)
75 2id6_A Transcriptional regulat 27.6 43 0.0015 21.2 2.5 28 22-49 36-64 (202)
76 2qib_A TETR-family transcripti 26.9 48 0.0016 21.6 2.8 31 20-50 42-73 (231)
77 2wui_A MEXZ, transcriptional r 26.8 36 0.0012 21.7 2.1 29 20-48 40-69 (210)
78 3nnr_A Transcriptional regulat 26.5 49 0.0017 21.2 2.7 31 20-50 34-65 (228)
79 1t33_A Putative transcriptiona 26.1 58 0.002 20.6 3.0 28 20-47 40-68 (224)
80 2iai_A Putative transcriptiona 25.8 28 0.00095 22.7 1.4 31 20-50 59-90 (230)
81 3he0_A Transcriptional regulat 25.6 37 0.0013 20.9 1.9 30 20-49 40-70 (196)
82 3crj_A Transcription regulator 25.4 39 0.0014 21.5 2.1 29 21-49 44-73 (199)
83 3s5r_A Transcriptional regulat 25.3 31 0.0011 21.6 1.5 28 22-49 41-69 (216)
84 3dpj_A Transcription regulator 25.2 55 0.0019 20.2 2.7 28 22-49 39-67 (194)
85 3f1b_A TETR-like transcription 25.1 45 0.0015 20.5 2.2 27 23-49 46-73 (203)
86 2fq4_A Transcriptional regulat 24.7 43 0.0015 21.0 2.1 27 20-46 41-68 (192)
87 1zk8_A Transcriptional regulat 23.9 33 0.0011 21.1 1.4 29 21-49 38-67 (183)
88 2rae_A Transcriptional regulat 23.6 32 0.0011 21.5 1.4 28 22-49 48-76 (207)
89 2ras_A Transcriptional regulat 23.2 25 0.00085 22.2 0.8 28 22-49 42-70 (212)
90 2jj7_A Hemolysin II regulatory 23.1 52 0.0018 20.2 2.3 27 20-46 36-63 (186)
91 2hyj_A Putative TETR-family tr 22.9 42 0.0014 21.4 1.9 29 21-49 42-71 (200)
92 2dg8_A Putative TETR-family tr 22.7 52 0.0018 20.6 2.2 27 23-49 41-68 (193)
93 3v6g_A Probable transcriptiona 22.4 66 0.0023 20.9 2.8 30 20-49 43-73 (208)
94 3c07_A Putative TETR-family tr 21.5 67 0.0023 22.0 2.8 27 23-49 73-100 (273)
95 3hta_A EBRA repressor; TETR fa 21.5 59 0.002 21.0 2.4 30 20-49 57-87 (217)
96 3geu_A Intercellular adhesion 21.4 32 0.0011 21.3 1.0 28 23-50 35-63 (189)
97 3o60_A LIN0861 protein; PSI, M 21.0 71 0.0024 20.6 2.7 29 22-50 51-80 (185)
98 4ich_A Transcriptional regulat 20.6 69 0.0024 22.2 2.7 28 22-49 151-179 (311)
99 3vp5_A Transcriptional regulat 20.5 82 0.0028 19.8 2.9 31 20-50 41-72 (189)
100 3cjd_A Transcriptional regulat 20.2 80 0.0027 20.1 2.8 27 23-49 44-71 (198)
101 1q2h_A APS, adaptor protein wi 20.2 51 0.0017 20.5 1.7 15 35-49 50-64 (69)
No 1
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=48.64 E-value=15 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|.+++++....+
T Consensus 38 ~Agvs~gt~Y~yF~sKe~L~~~~~~~~~~~~ 68 (204)
T 3anp_C 38 AAHVSRGTFFNYYPYKEAVLLDYGSQLLAGL 68 (204)
T ss_dssp HHTSCHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444456678888886 999999888766554
No 2
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=47.11 E-value=15 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.434 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ |++|.+++++.+..+
T Consensus 37 ~AGvs~gt~Y~yF~sKe~L~~~v~~~~~~~~ 67 (206)
T 1vi0_A 37 QAGVADGTIYLYFKNKEDILISLFKEKMGQF 67 (206)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCChhHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444556678888886 999998888765554
No 3
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=45.02 E-value=18 Score=23.18 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ |++|.++++..+.++
T Consensus 41 ~aGvsk~tlY~~F~sKe~L~~~~~~~~~~~~ 71 (211)
T 3bhq_A 41 KAGASKQTVYKHFTDKETLFGEVVLSTASQV 71 (211)
T ss_dssp HHTCCHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344456678888886 999999988776655
No 4
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=42.75 E-value=19 Score=22.41 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ |++|.+++++....+
T Consensus 31 ~agvskgtlY~~F~sKe~L~~~~~~~~~~~~ 61 (179)
T 2eh3_A 31 RANLSKGAFYFHFKSKEELITEIIERTHKKI 61 (179)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999988776654
No 5
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=42.50 E-value=23 Score=21.65 Aligned_cols=33 Identities=12% Similarity=0.298 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhhhC
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQKK 52 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~~k 52 (86)
+-.-|-..+.+||++ +++|.+++++.+.++...
T Consensus 33 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 66 (170)
T 3egq_A 33 EAKVSKSLIFYHFESKQKLLEEAVMHAFRKMMEE 66 (170)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334456678888886 999999999888877543
No 6
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=42.29 E-value=19 Score=23.29 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|--.+..||++ |++|..++++.+..+
T Consensus 54 aGvskgtlY~yF~sKe~L~~a~~~~~~~~~ 83 (214)
T 2oer_A 54 AGVSIGSLYQYFPNKAAILFRLQSDEWRRT 83 (214)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred hCCCCchHHHhCCCHHHHHHHHHHHHHHHH
Confidence 33455667888886 888888887766543
No 7
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=41.19 E-value=23 Score=21.71 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+..||++ +++|.+++++.+..+.
T Consensus 39 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 70 (191)
T 3on4_A 39 AINIKTASIHYHFPSKEDLGVAVISWHTDKIA 70 (191)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 444456678888886 8999999888766653
No 8
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=41.06 E-value=23 Score=21.59 Aligned_cols=31 Identities=3% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|.+++++...++.
T Consensus 37 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 68 (188)
T 3qkx_A 37 EANVAAGTIYLYFKNKDELLEQFAHRVFSMFM 68 (188)
T ss_dssp HHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 333455667888886 8999988887776653
No 9
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=40.88 E-value=19 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+..||++ |++|.+++++.+..+
T Consensus 37 aGvs~gtlY~~F~sKe~L~~av~~~~~~~~ 66 (197)
T 2gen_A 37 SGASIGSLYHHFGNKERIHGELYLAGIGQY 66 (197)
T ss_dssp HCCCHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33455567788876 888888887665554
No 10
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=40.77 E-value=21 Score=22.07 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|...+.+||++ +++|.++++..+.++
T Consensus 41 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 71 (190)
T 2v57_A 41 AAGVGRSTVHRYYPERTDLLRALARHVHDLS 71 (190)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444456668888886 999999988777665
No 11
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=40.70 E-value=18 Score=22.34 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|...+.+||++ +++|.+++++.+.++
T Consensus 31 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 61 (194)
T 3bqz_B 31 LSESSKGNLYYHFKTKENLFLEILNIEESKW 61 (194)
T ss_dssp HTTCCHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCchhHHHhCCCHHHHHHHHHHHHHHHH
Confidence 333455667888886 888888887766655
No 12
>3cwb_I Mitochondrial ubiquinol-cytochrome C reductase IR subunit, leader sequence; crocacin D, inhibitor design, structure-activity relationshi polyketide, fungicide; HET: BOG HEM PEE ICX UQ HEC CDL; 3.51A {Gallus gallus}
Probab=40.60 E-value=19 Score=21.44 Aligned_cols=22 Identities=5% Similarity=-0.161 Sum_probs=19.9
Q ss_pred ccccCCCCCCCCCCCCCccCCC
Q psy13897 64 KMLLPPAGTPLTGNNPLTALTV 85 (86)
Q Consensus 64 slLLPPt~TPLTGI~f~KRLP~ 85 (86)
.+++||+.++++.-+++..||.
T Consensus 14 ~~vv~~~~p~l~~eSLsgqlp~ 35 (52)
T 3cwb_I 14 XXXXXXXRPLLCRESMSGRSAR 35 (52)
T ss_dssp CCCCSSCCCCCSSTTTSSCSCS
T ss_pred cccccccCCcchHHhhccccCC
Confidence 4678999999999999999985
No 13
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=40.00 E-value=15 Score=23.45 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|--.+..||++ +++|.+++++...++
T Consensus 41 ~agvs~gtlY~yF~sKe~L~~~v~~~~~~~~ 71 (205)
T 1rkt_A 41 ESGFSRGGVYLYFSSTEEMFRRIIETGLDEG 71 (205)
T ss_dssp HHTSCHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHCCCcchhhhhCCCHHHHHHHHHHHHHHHH
Confidence 334455667777876 889988888766544
No 14
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=39.85 E-value=22 Score=22.58 Aligned_cols=30 Identities=7% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|.-.+..||++ |++|..+++.-+..+
T Consensus 39 ~aGvs~gtlY~yF~sKe~L~~a~~~~~~~~~ 69 (194)
T 2nx4_A 39 EAGYTNGALSHYFAGKDEILRTSYEHISEAT 69 (194)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHhCcCHHHHHHHHHHHHHHHH
Confidence 344456678888886 999999988765554
No 15
>3nym_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MLY; 1.90A {Neisseria meningitidis serogroup B}
Probab=39.68 E-value=39 Score=23.46 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhhhHHH
Q psy13897 16 AIVNAKEESTSLLRNFYKSEDIFLDMFQFE 45 (86)
Q Consensus 16 ~l~~ar~~s~~~Lr~fyk~eeiFLdmFEDE 45 (86)
+|--||.-|+. |++ +|.+||||=
T Consensus 86 sL~~Amvyagn-l~n------fFd~ik~Di 108 (128)
T 3nym_A 86 SLFMAMIYAGN-LSL------IFDSIKTDI 108 (128)
T ss_dssp HHHHHHHHHHH-HHH------HHHHHHHHH
T ss_pred HHHHHHHHHcc-HHH------HHHHHHHHH
Confidence 44445555544 555 588888884
No 16
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=39.21 E-value=21 Score=22.67 Aligned_cols=30 Identities=3% Similarity=0.076 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ +++|.+++++-+.++
T Consensus 39 ~Agvskgt~Y~yF~sKe~L~~~~~~~~~~~~ 69 (197)
T 2f07_A 39 KAGTAQGTFYLYFSSKNALIPAIAENLLTHT 69 (197)
T ss_dssp HHTSCHHHHHHHCSSSTTHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999888766554
No 17
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=38.99 E-value=23 Score=22.23 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+.+||++ +++|.++++..+..+
T Consensus 46 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 74 (199)
T 2rek_A 46 GVGSATLHRHFPSRWGLLQAVFQERVAQL 74 (199)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3445567777775 888888877766554
No 18
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=38.59 E-value=26 Score=21.80 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+..||++ +++|.+++++.+..+.
T Consensus 43 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 74 (215)
T 3e7q_A 43 EAGVSVGLINHHYDGKDALVAEAYLAVTGRVM 74 (215)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334456678888886 9999999888776653
No 19
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=38.34 E-value=21 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+.+||++ +++|.+++++.+..+.
T Consensus 52 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 83 (214)
T 2zb9_A 52 VSGVSKTTLYKWWPSKGALALDGYFHAVEDTL 83 (214)
T ss_dssp HHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHCCCHHHHHHHHHHHHhhhcc
Confidence 334455678888886 9999999988877763
No 20
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=38.04 E-value=26 Score=21.66 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+..||++ +++|..++++....+.
T Consensus 46 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 77 (206)
T 3kz9_A 46 IAQVSVATVFNYFPTREDLVDEVLNHVVRQFS 77 (206)
T ss_dssp HHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455667788886 8888888887766553
No 21
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.90 E-value=27 Score=22.38 Aligned_cols=31 Identities=10% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|.+++++.+.++.
T Consensus 37 ~aGvs~~tiY~~F~sKe~L~~~v~~~~~~~~~ 68 (202)
T 2d6y_A 37 EARANKQLIYAYYGNKGELFASVLEKKMLDLA 68 (202)
T ss_dssp HHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455668888886 8999999888776654
No 22
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=37.60 E-value=26 Score=22.30 Aligned_cols=30 Identities=33% Similarity=0.413 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ +++|..+++.-...+
T Consensus 39 ~aGvs~~t~Y~~F~sKe~L~~a~~~~~~~~~ 69 (210)
T 3vib_A 39 AAGVTRDALYWHFKNKEDLFDALFQRICDDI 69 (210)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 444456678888887 999999988765554
No 23
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=37.51 E-value=27 Score=21.76 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|...+..||++ |++|..++++-+..+
T Consensus 48 aGvs~~tlY~~F~sKe~L~~~~~~~~~~~~ 77 (212)
T 3loc_A 48 AGVSKTNLLYYFPSKEALYIAVLRQILDIW 77 (212)
T ss_dssp HTSCHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHhhhCCCHHHHHHHHHHHHHHHH
Confidence 33455678888886 899988877665444
No 24
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.18 E-value=25 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|.-.+..||++ |++|.++++.....+
T Consensus 38 ~aGvs~gtlY~yF~sKe~L~~a~~~~~~~~~ 68 (209)
T 2gfn_A 38 ESGWSTGVLNHYFGSRHELLLAALRRAGDIQ 68 (209)
T ss_dssp HHSSCHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCcchHHhcCCCHHHHHHHHHHHHHHHH
Confidence 334466678888986 999999988766554
No 25
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=37.18 E-value=26 Score=21.91 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|.+++++-+..+
T Consensus 43 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 73 (212)
T 3knw_A 43 TSGVPKGSFYHYFESKEAFGCELLKHYISDY 73 (212)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 344456678888886 899999988776665
No 26
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=37.14 E-value=27 Score=23.01 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-..+...+..||++ |++|.+++++-+..+
T Consensus 37 AGvs~~tlY~hF~sKe~L~~av~~~~~~~~ 66 (235)
T 2fbq_A 37 AGVNLAAVNYHFGSKKALIQAVFSRFLGPF 66 (235)
T ss_dssp HTSCHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34456678888886 999999998765544
No 27
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=37.03 E-value=26 Score=21.56 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
.-.-|-..+.+||++ +++|..++++.+..+.
T Consensus 37 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 68 (206)
T 3dew_A 37 AAGASISMISYHFGGKEGLYAAVLQEQFACFG 68 (206)
T ss_dssp HHTCCHHHHHHHSCHHHHHHHHHHHHHHGGGG
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455678888886 9999999988877663
No 28
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=36.96 E-value=21 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|-..+..||++ +++|.+++++-+.++
T Consensus 46 vs~~tlY~~F~sKe~L~~~~~~~~~~~~ 73 (204)
T 2ibd_A 46 ILSGSLYHHFDSKESMVDEILRGFLDDL 73 (204)
T ss_dssp SCHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 445566777775 777777776655544
No 29
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=36.74 E-value=23 Score=22.21 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
-|-..+.+||++ +++|.++++..+..+.
T Consensus 46 vs~~tlY~~F~sK~~L~~~~~~~~~~~~~ 74 (194)
T 2q24_A 46 VGSGTLYRNFPTREALIEAAYRNEVARLC 74 (194)
T ss_dssp CCHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345567777775 8888888777665553
No 30
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=36.54 E-value=31 Score=21.08 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+.+||++ +++|.+++++-+..+
T Consensus 38 agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 67 (195)
T 3pas_A 38 AGLSPATLYIYYEDKEQLLLATFYYVSDQV 67 (195)
T ss_dssp HTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33455667788886 889888888776665
No 31
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=36.35 E-value=19 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+..||++ +++|.+++++.+..+.
T Consensus 44 ~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~~ 75 (221)
T 3c2b_A 44 AANCSKESLYKWFGDRDGLLAAMITFQQSKVR 75 (221)
T ss_dssp HHTCCHHHHHHHHSSHHHHHHHHHHHHHTSSC
T ss_pred HhCCCHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 334456678888886 9999999988776653
No 32
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=36.29 E-value=20 Score=22.19 Aligned_cols=31 Identities=13% Similarity=0.021 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+..||++ +++|.+++++.+.++.
T Consensus 46 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 77 (208)
T 3cwr_A 46 EAGIAKKTLYRFASGRADLIGLLVESWIAPIF 77 (208)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHTTTT
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444456678888886 9999999998877664
No 33
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=35.96 E-value=31 Score=21.30 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|.+++++.+..+.
T Consensus 43 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 74 (191)
T 4aci_A 43 ATGKSRGAIFHHFGDKENLFLALAREDAARMA 74 (191)
T ss_dssp HHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334455667788886 8888888887666553
No 34
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=35.69 E-value=25 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
.-|...+.+||++ +++|..++++.+..+.
T Consensus 48 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 77 (218)
T 3gzi_A 48 GTDPGLIRYYFGSKEKLFSTMIHETAMPVL 77 (218)
T ss_dssp TSCTHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455567788875 8888888887766653
No 35
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=35.66 E-value=21 Score=22.91 Aligned_cols=30 Identities=3% Similarity=0.022 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|--.+..||++ |++|.++++..+..+
T Consensus 40 ~aGvskgtlY~~F~sKe~L~~av~~~~~~~~ 70 (219)
T 2w53_A 40 RAGYTRGAVYWHFKNKSEVLAAIVERVHLPF 70 (219)
T ss_dssp HHTSCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCchHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 333455667788886 899998888765554
No 36
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=35.15 E-value=31 Score=21.47 Aligned_cols=31 Identities=6% Similarity=0.323 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+..||++ +++|.+++++.+..+.
T Consensus 45 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 76 (213)
T 2qtq_A 45 RSGLNSALVKYYFGNKAGLLKALLDRDMENIV 76 (213)
T ss_dssp HHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCChhhHhHhcCCHHHHHHHHHHHHHHHHH
Confidence 333455668888886 8899988888776653
No 37
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.00 E-value=32 Score=21.93 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|...+..||++ +++|.++++..+.++
T Consensus 49 aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~ 78 (215)
T 2hku_A 49 AGAHPNQVTYYYGSKERLFVEVACAAVLRA 78 (215)
T ss_dssp HTCCHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33445567888876 889998887665554
No 38
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=34.98 E-value=23 Score=22.47 Aligned_cols=27 Identities=4% Similarity=0.140 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|-..+.+||++ +++|.++++..+..+
T Consensus 44 vs~~tlY~~F~sK~~L~~~~~~~~~~~~ 71 (196)
T 2qwt_A 44 VGAGTVYRHFPTKQALVVAVAEDRVRRI 71 (196)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345566777765 777777777665554
No 39
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=34.85 E-value=20 Score=22.12 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|...+.+||++ +++|..++++.+..+
T Consensus 37 agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 66 (199)
T 3qbm_A 37 TGLEKGGIYRHFESKEQLALAAFDYAAEKV 66 (199)
T ss_dssp HTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred hCCCccHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 33455667788886 889999888776665
No 40
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=34.75 E-value=27 Score=21.32 Aligned_cols=28 Identities=7% Similarity=0.140 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+.+||++ +++|.+++++.+..+
T Consensus 39 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 67 (194)
T 2g7s_A 39 GIRNASIHHHFPSKSDLVCKLVSQYRQEA 67 (194)
T ss_dssp CCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455567777775 888888877665554
No 41
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=34.58 E-value=30 Score=21.42 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
.-|...+.+||++ +++|.+++++.+..+.
T Consensus 51 gvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~ 80 (203)
T 3mnl_A 51 DVAVGTLYRYFPSKVHLLVSALGREFSRID 80 (203)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455667888886 9999999988877764
No 42
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.45 E-value=30 Score=22.10 Aligned_cols=30 Identities=10% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|.-.+..||++ |++|.++++.-...+
T Consensus 38 ~AGvs~gtlY~~F~sKe~L~~a~~~~~~~~~ 68 (203)
T 2np5_A 38 RAGVSIGAVQHHFSTKDEMFAFALRTLVDKL 68 (203)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344456678888886 999999988766655
No 43
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=34.15 E-value=31 Score=21.82 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|..+++.-+..+
T Consensus 59 ~aGvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 89 (222)
T 3bru_A 59 AARVPKGSFYHYFRNKADFGLALIEAYDTYF 89 (222)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchhhhhCCCHHHHHHHHHHHHHHHH
Confidence 334455667788876 888888887765554
No 44
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=33.70 E-value=32 Score=21.37 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|..++++-+.++
T Consensus 43 ~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~ 73 (220)
T 3lhq_A 43 AAGVTRGAIYWHFKNKSDLFSEIWELSESNI 73 (220)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCceeehhhcCCHHHHHHHHHHHHHHHH
Confidence 333455667888886 888888887766555
No 45
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=33.58 E-value=32 Score=21.32 Aligned_cols=31 Identities=10% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+..||++ +++|..++++....+.
T Consensus 37 ~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~ 68 (190)
T 3jsj_A 37 AAGVSKRSMYQLFESKDELLAASLKERSAAFV 68 (190)
T ss_dssp HHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455668888886 9999999988776653
No 46
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=33.38 E-value=21 Score=23.02 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|.+++++.+..+
T Consensus 51 ~AGVsk~tlY~~F~sKe~L~~a~~~~~~~~~ 81 (207)
T 3bjb_A 51 RAGVAIGTLYRYFPSKTHLFVAVMVDQIDRM 81 (207)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999988776554
No 47
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=33.24 E-value=25 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhh-hhHHHhhhHHHHH
Q psy13897 19 NAKEESTSLLRNFYKS-EDIFLDMFQFEYD 47 (86)
Q Consensus 19 ~ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~ 47 (86)
.+-.-|-..+..||++ |++|.+++++...
T Consensus 39 ~~aGvsk~tlY~~F~sKe~L~~av~~~~~~ 68 (202)
T 2i10_A 39 KALGINPPSLYAAFGSKRDLFEKTLDRYMC 68 (202)
T ss_dssp HHHTCCHHHHHHHHCSHHHHHHHHHHHHCS
T ss_pred HHhCCChHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444566678888986 9999998876543
No 48
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=33.22 E-value=31 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+.+||++ +++|.+++++.+..+.
T Consensus 72 ~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~ 103 (255)
T 3g1o_A 72 GAGISRPTFYFYFPSKEAVLLTLLDRVVNQAD 103 (255)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 333455668888886 9999999888776653
No 49
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=33.18 E-value=34 Score=21.35 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
-..|-..+.+||++ +++|..++++....+.
T Consensus 56 agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 86 (217)
T 3mvp_A 56 ADVSVGTLYAYFASKEDILTALLKRYNDFFL 86 (217)
T ss_dssp HTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred hCCChhHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33455667888886 9999999888766664
No 50
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=32.84 E-value=26 Score=22.78 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
.-|-..+.+||++ +++|.+++++.+.++.
T Consensus 61 Gvs~~tlY~~F~sK~~L~~a~~~~~~~~~~ 90 (226)
T 2pz9_A 61 RTSKERVYAYFRSKEALYAHVAERETTALI 90 (226)
T ss_dssp TSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3455668888886 9999999988877764
No 51
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=32.63 E-value=37 Score=21.16 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ +++|.++++..+.++
T Consensus 37 ~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~ 67 (195)
T 3frq_A 37 EVGLSRAALIQRFTNRDTLLVRMMERGVEQV 67 (195)
T ss_dssp HHTCCHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999988876665
No 52
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=32.62 E-value=34 Score=21.53 Aligned_cols=30 Identities=7% Similarity=0.101 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|.+++++-..++
T Consensus 37 ~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~ 67 (199)
T 2o7t_A 37 QAGVGVATLYRNFPDRFTLDMACAQYLFNVV 67 (199)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334455667788875 888888887765554
No 53
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=32.56 E-value=19 Score=22.94 Aligned_cols=27 Identities=0% Similarity=0.062 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|-..+..||++ |++|.+++++-+..+
T Consensus 43 vskgtlY~~F~sKe~L~~~~~~~~~~~~ 70 (210)
T 2xdn_A 43 VTRGAIYWHFNNKAELVQALLDSLAETH 70 (210)
T ss_dssp CCTTHHHHHCSSHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345567888886 999999988765544
No 54
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=32.43 E-value=23 Score=22.45 Aligned_cols=26 Identities=4% Similarity=0.157 Sum_probs=16.3
Q ss_pred HHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 24 STSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 24 s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
|-..+..||++ |++|.+++++-+..+
T Consensus 45 s~~tlY~~F~sKe~L~~av~~~~~~~~ 71 (197)
T 2hyt_A 45 TRGALYHHFGDKKGLLAAVVEQIDAEM 71 (197)
T ss_dssp CTTHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34456666765 777777776655544
No 55
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.40 E-value=33 Score=22.18 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|...+..||++ +++|.+++++.+.++
T Consensus 64 ~AGvs~~tlY~~F~sKe~L~~~~~~~~~~~~ 94 (221)
T 3g7r_A 64 EAQVTRATLYRHFSGKDDLILAYLDQADRGI 94 (221)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999888766655
No 56
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=31.84 E-value=34 Score=22.33 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|...+..||++ +++|.++++..+.++
T Consensus 73 AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~ 102 (229)
T 3bni_A 73 ADVPIGSVYRFFGNKRQMADALAQRNLERY 102 (229)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCchhHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33455667788876 888888887766655
No 57
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.83 E-value=33 Score=22.33 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+..||++ +++|.+++++....+.
T Consensus 69 ~Agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~ 100 (225)
T 2id3_A 69 RAGVGKTTVYRRWGTPGGLAADLLADMAEQSL 100 (225)
T ss_dssp HHTCCHHHHHHHHCSHHHHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHCCCHHHHHHHHHHHHHHHhc
Confidence 344455678888886 9999999988877763
No 58
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=31.65 E-value=36 Score=21.39 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ +++|.+++++....+
T Consensus 40 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 70 (216)
T 3f0c_A 40 DVGMGKASLYYYFPDKETLFEAVIKKEQNVF 70 (216)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 889988888766655
No 59
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=31.47 E-value=35 Score=22.32 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+..||++ +++|.+++++.+..+.
T Consensus 73 ~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~ 104 (236)
T 3q0w_A 73 GAGISRPTFYFYFPSKEAVLLTLLDRVVNQAD 104 (236)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334456678888886 9999999888776653
No 60
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=31.18 E-value=41 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ +++|.++++.....+
T Consensus 32 ~AGvskgtlY~hF~sKe~L~~a~~~~~~~~~ 62 (208)
T 2g3b_A 32 VAGVSPGLLYYHFKDRIGLLEAALNYINDRA 62 (208)
T ss_dssp HHTSCHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHCCCHHHHHHHHHHHHHhHH
Confidence 334455668888886 999999988766544
No 61
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=31.12 E-value=34 Score=21.23 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|..++++.+.++.
T Consensus 41 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 72 (202)
T 3lwj_A 41 LSEVGTGTFYNYFVDKEDILKNLLEDFAKQII 72 (202)
T ss_dssp HHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCchhHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455668888886 8899988887766653
No 62
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=30.37 E-value=26 Score=21.72 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|.++++..+.++.
T Consensus 40 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 71 (203)
T 3b81_A 40 KLGISKGALYHYFSSKEECADAAIENRVAFFS 71 (203)
T ss_dssp HHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCchhHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334455667888886 9999999888776653
No 63
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=30.35 E-value=32 Score=21.42 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+.+||++ +++|.+++++.+..+
T Consensus 37 agvs~~tlY~~F~sK~~L~~av~~~~~~~~ 66 (192)
T 2zcm_A 37 VNIKKASLYYHYDNKEEIYRKSVENCFNYF 66 (192)
T ss_dssp TTCCHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34455667888876 889998888766554
No 64
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=30.32 E-value=23 Score=21.66 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|...+.+||++ +++|.+++++.+.++
T Consensus 39 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 69 (196)
T 3col_A 39 RVGIAQSNVYLYFKNKQALIDSVYARETNRI 69 (196)
T ss_dssp HHTSCHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HhCCcHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 334455667777776 888888888776665
No 65
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=29.82 E-value=35 Score=22.51 Aligned_cols=29 Identities=3% Similarity=0.213 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|...+.+||++ +++|.++++..+..+
T Consensus 48 aGvs~~tlY~~F~sKe~Ll~av~~~~~~~~ 77 (251)
T 3npi_A 48 SGMSKRMIHYHFGDKRGLYICCLEEAVRRL 77 (251)
T ss_dssp HCCCHHHHHHHHCSHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33456678888886 999999998887766
No 66
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=29.17 E-value=22 Score=21.99 Aligned_cols=28 Identities=7% Similarity=0.380 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|...+.+||++ +++|.+++++.+..+
T Consensus 42 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 70 (204)
T 3eup_A 42 NLTKGSIYGNFENKEAVAIAAFDYNWGHV 70 (204)
T ss_dssp TCCHHHHTTTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3455567777776 899999988777665
No 67
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=29.05 E-value=44 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|--.+..||++ +++|.+++++....+
T Consensus 39 AGvskgtlY~~F~sKe~L~~~~~~~~~~~~ 68 (215)
T 1ui5_A 39 AGVTKGALYFHFAAKEDLAHAILEIQSRTS 68 (215)
T ss_dssp HTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHhhCCCHHHHHHHHHHHHHHHH
Confidence 33445567777775 888888777655443
No 68
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=28.88 E-value=42 Score=21.21 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+.+||++ +++|..++++....+.
T Consensus 32 ~Agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~ 63 (212)
T 3rh2_A 32 HLDISPGNLYYHFRNKEDIIRCIFDQYEQHLL 63 (212)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 444556678888886 9999999988877764
No 69
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=28.71 E-value=48 Score=20.17 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+.+||++ +++|..++++-...+
T Consensus 40 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 68 (195)
T 3ppb_A 40 GVATGTLFHHFPSKEQLLEQLFLGVKQEF 68 (195)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455667888886 888888887766655
No 70
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=28.65 E-value=22 Score=21.84 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+.+||++ +++|..++++.+..+
T Consensus 40 agvs~~tlY~~F~sK~~L~~~~~~~~~~~~ 69 (197)
T 3rd3_A 40 AGVPKGSFYHYFKSKEQFGQALLEDYFRVY 69 (197)
T ss_dssp HTCCHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hCCChhhHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33455567777775 888888888776665
No 71
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=28.18 E-value=26 Score=21.89 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=16.9
Q ss_pred HHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 24 STSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 24 s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
|...+..||++ +++|.+++++....+
T Consensus 58 s~~t~Y~~F~sK~~L~~~~~~~~~~~~ 84 (212)
T 3nxc_A 58 SEAALYRHFPSKTRMFDSLIEFIEDSL 84 (212)
T ss_dssp CHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44556667765 888888877655544
No 72
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=27.87 E-value=37 Score=21.14 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|...+.+||++ +++|.+++++-+..+
T Consensus 49 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 77 (212)
T 1pb6_A 49 GVSKTNLLYYFPSKEALYIAVLRQILDIW 77 (212)
T ss_dssp TSCHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3455667888876 889998888776665
No 73
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=27.81 E-value=44 Score=22.15 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+..||++ +++|..+++.-+..+
T Consensus 52 ~agvs~~tlY~~F~sKe~L~~av~~~~~~~~ 82 (231)
T 2zcx_A 52 TVGMHKSALLRYFETREQIFLKITAEGWKEW 82 (231)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999988776665
No 74
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=27.81 E-value=46 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+.+||++ +++|.++++..+.++
T Consensus 62 gvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~ 90 (218)
T 3dcf_A 62 GFTKPAIYYYFKSKEDVLFAIVNSIVDEA 90 (218)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455667777775 888888887766665
No 75
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=27.55 E-value=43 Score=21.22 Aligned_cols=28 Identities=11% Similarity=0.440 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+..||++ +++|..+++.-...+
T Consensus 36 gvskgtlY~yF~sKe~L~~~~~~~~~~~~ 64 (202)
T 2id6_A 36 GVAKGLIFHYFKNKEELYYQAYMSVTEKL 64 (202)
T ss_dssp TCCTHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3345567777776 888888877655444
No 76
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=26.94 E-value=48 Score=21.62 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|.+++++.+.++.
T Consensus 42 ~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~ 73 (231)
T 2qib_A 42 AAGISRPLVYHYFPGKLSLYEAALQRASDDLA 73 (231)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334455667888886 9999999887766653
No 77
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=26.83 E-value=36 Score=21.71 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHH
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQ 48 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~ 48 (86)
+-.-|--.+..||++ |++|..+++.-+..
T Consensus 40 ~aGvskgtlY~~F~sKe~L~~a~~~~~~~~ 69 (210)
T 2wui_A 40 AAGVSRGAVYGHYKNKIEVCLAMCDRAFGQ 69 (210)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHTT
T ss_pred HhCCCHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 444456678889986 99999998876544
No 78
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=26.51 E-value=49 Score=21.25 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|-..+.+||++ +++|..++++.+..+.
T Consensus 34 ~Agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 65 (228)
T 3nnr_A 34 HLAISPGNLYYHFRNKSDIIYEIFQEYEKLVD 65 (228)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCccchhcCCCHHHHHHHHHHHHHHHHH
Confidence 334456678888886 9999999988877664
No 79
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=26.08 E-value=58 Score=20.58 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHH
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYD 47 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~ 47 (86)
+-..|...+..||++ +++|.+++++-+.
T Consensus 40 ~agvs~~tiY~~F~sK~~L~~~~~~~~~~ 68 (224)
T 1t33_A 40 LAGQNIAAITYYFGSKEDLYLACAQWIAD 68 (224)
T ss_dssp HHTSCHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 334456678888886 9999998877643
No 80
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=25.78 E-value=28 Score=22.71 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+.+||++ +++|.+++++.+.++.
T Consensus 59 ~Agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~ 90 (230)
T 2iai_A 59 AAGISKSSIYHHVTGKEELLRRAVSRALDELF 90 (230)
T ss_dssp HHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCChhHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 333455567777775 8888888887766653
No 81
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.64 E-value=37 Score=20.87 Aligned_cols=30 Identities=7% Similarity=0.159 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|-..+.+||++ +++|..++++.+..+
T Consensus 40 ~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 70 (196)
T 3he0_A 40 EAGVAAGTIYRYFSDKEHLLEEVRLNVAKRI 70 (196)
T ss_dssp HHTSCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHhcCCHHHHHHHHHHHHHHHH
Confidence 333455567777776 999999988777665
No 82
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=25.43 E-value=39 Score=21.49 Aligned_cols=29 Identities=14% Similarity=0.478 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+..||++ +++|.++++.-+..+
T Consensus 44 agvsk~tlY~yF~sKe~L~~a~~~~~~~~~ 73 (199)
T 3crj_A 44 YGKSTAAVHYYYDTKDDLLAAFLDYLLERF 73 (199)
T ss_dssp HTSCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred hCCChhHHhhhcCCHHHHHHHHHHHHHHHH
Confidence 33455667788876 999998887665554
No 83
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=25.29 E-value=31 Score=21.60 Aligned_cols=28 Identities=7% Similarity=0.355 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|...+.+||++ +++|.+++++.+..+
T Consensus 41 gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 69 (216)
T 3s5r_A 41 GVNPAMIHYYFKTRDSLLDTIIEERIGRI 69 (216)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3455667788886 888888888766655
No 84
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=25.21 E-value=55 Score=20.17 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|...+.+||.+ +++|..++++-+.++
T Consensus 39 gvs~~tly~~F~sK~~L~~a~~~~~~~~~ 67 (194)
T 3dpj_A 39 GISRGNFYYHFKTKDEILAEVIRLRLART 67 (194)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3445567788875 888888887766555
No 85
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=25.09 E-value=45 Score=20.54 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|-..+.+||++ ++++.+++++-+..+
T Consensus 46 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 73 (203)
T 3f1b_A 46 ISKPMLYLYYGSKDELFAACIQREGLRF 73 (203)
T ss_dssp SCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345567788876 889988888776665
No 86
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=24.74 E-value=43 Score=21.04 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHH
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEY 46 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy 46 (86)
+-.-|-..+..||++ +++|.+++++..
T Consensus 41 ~agvsk~tlY~~F~sKe~L~~~~~~~~~ 68 (192)
T 2fq4_A 41 RAKVSKATIYKWWPNKAAVVMDGFLSAA 68 (192)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHS
T ss_pred HcCCCHHHHHHHCCCHHHHHHHHHHHhc
Confidence 334456678888886 999999887654
No 87
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=23.88 E-value=33 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+..||++ +++|.+++++-..++
T Consensus 38 agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 67 (183)
T 1zk8_A 38 LGVRSPSLYNHVKGLQDVRKNLGIYGIKKL 67 (183)
T ss_dssp HTSCHHHHTTTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33445556777775 888888887665554
No 88
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=23.60 E-value=32 Score=21.53 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+.+||++ +++|.+++++.+.++
T Consensus 48 gvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~ 76 (207)
T 2rae_A 48 GIARRTLFRYFPSKNAIPWGDFDAHLAEM 76 (207)
T ss_dssp TSCHHHHHHHCSSTTTGGGCSHHHHHHHH
T ss_pred CCCcchHhhhCCCHHHHHHHHHHHHHHHH
Confidence 3456678888886 999999888776655
No 89
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=23.19 E-value=25 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|-..+.+||++ +++|.++++..+..+
T Consensus 42 gvs~~t~Y~~F~sK~~L~~~v~~~~~~~~ 70 (212)
T 2ras_A 42 GISQANLSRYFETREDLMEAIADYWFHPM 70 (212)
T ss_dssp TSCHHHHTTTCSSHHHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3344556677765 888887777655544
No 90
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=23.09 E-value=52 Score=20.20 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHH
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEY 46 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy 46 (86)
+-.-|...+.+||++ +++|.+++++-+
T Consensus 36 ~agvs~~tlY~~F~sK~~L~~~~~~~~~ 63 (186)
T 2jj7_A 36 EAKVNVAMASYYFNGKENLYYEVFKKYG 63 (186)
T ss_dssp HHTSCHHHHHHHHSSHHHHHHHHHHHHS
T ss_pred HhCCChhhhhhhcCCHHHHHHHHHHHHH
Confidence 334456678888886 899999887653
No 91
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.90 E-value=42 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 21 KEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 21 r~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-.-|-..+..||++ |++|.++++.-...+
T Consensus 42 aGvsk~tlY~hF~sKe~L~~a~~~~~~~~~ 71 (200)
T 2hyj_A 42 LEMSKSGVHKHFGTKETLQISTLDKAFVDF 71 (200)
T ss_dssp HTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33455567777875 999999887755443
No 92
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.72 E-value=52 Score=20.56 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|-..+..||++ +++|.++++.....+
T Consensus 41 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 68 (193)
T 2dg8_A 41 VPLGSMTYHFTGIEQLLREAFGRFTDHI 68 (193)
T ss_dssp SCTHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCchhhheeCCCHHHHHHHHHHHHHHHH
Confidence 344556777775 888888877655544
No 93
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=22.37 E-value=66 Score=20.91 Aligned_cols=30 Identities=0% Similarity=0.045 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-..|...+..||.+ +++|..+++.-...+
T Consensus 43 ~AGvs~~tlY~~F~sKe~L~~av~~~~~~~~ 73 (208)
T 3v6g_A 43 EANVPVGSTTYYFNDLDALREAALAHAANAS 73 (208)
T ss_dssp HHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HhCCCchhHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334455668888886 999999887765554
No 94
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=21.48 E-value=67 Score=22.04 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-+-..+..||++ +++|.+++++.+.++
T Consensus 73 Vs~~tlY~hF~sKe~Ll~av~~~~~~~~ 100 (273)
T 3c07_A 73 VSVGNAYYYFAGKEHLIQGFYDRIAAEH 100 (273)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 345567777775 888888877665554
No 95
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=21.46 E-value=59 Score=21.01 Aligned_cols=30 Identities=3% Similarity=0.178 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
+-.-|...+..||++ +++|.+++++-+.++
T Consensus 57 ~aGvs~~tlY~~F~sK~~Ll~a~~~~~~~~~ 87 (217)
T 3hta_A 57 EADVPLGSTTYHFATLDDLMVAALRQANEGF 87 (217)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHTHHH
T ss_pred HcCCCcchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 334455667888886 999999988766655
No 96
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.43 E-value=32 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
-|...+.+||++ +++|..++++....+.
T Consensus 35 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 63 (189)
T 3geu_A 35 IKKASLYYHFDSKKSIYEQSVKCCFDYLN 63 (189)
T ss_dssp CCHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 344556677775 8888888877666653
No 97
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=21.05 E-value=71 Score=20.61 Aligned_cols=29 Identities=7% Similarity=-0.069 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
.-|-..+..||++ +|++..++++.+.++.
T Consensus 51 gvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~ 80 (185)
T 3o60_A 51 RVSRATFYRHHKEIIQVIEVQILRTMQYFS 80 (185)
T ss_dssp TCCHHHHHHHCSSTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3445567777876 8888888877766653
No 98
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=20.56 E-value=69 Score=22.22 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 22 EESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 22 ~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
.-|...+..||++ +++|..++++.+..+
T Consensus 151 Gvs~gtlY~yF~sKe~Ll~av~~~~~~~~ 179 (311)
T 4ich_A 151 GTSNATIHYHFPSKKDILLEALRRNVKLA 179 (311)
T ss_dssp TCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3455668888886 999999988776654
No 99
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=20.52 E-value=82 Score=19.84 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhh-hhHHHhhhHHHHHHhh
Q psy13897 20 AKEESTSLLRNFYKS-EDIFLDMFQFEYDQIQ 50 (86)
Q Consensus 20 ar~~s~~~Lr~fyk~-eeiFLdmFEDEy~~~~ 50 (86)
+-.-|...+..||++ ++++..++++....+.
T Consensus 41 ~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~ 72 (189)
T 3vp5_A 41 ALDIPRGSFYQYFEDLKDAYFYVLSQETLEIH 72 (189)
T ss_dssp HHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334455667788886 8999999888776653
No 100
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=20.20 E-value=80 Score=20.06 Aligned_cols=27 Identities=4% Similarity=0.212 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhh-hhHHHhhhHHHHHHh
Q psy13897 23 ESTSLLRNFYKS-EDIFLDMFQFEYDQI 49 (86)
Q Consensus 23 ~s~~~Lr~fyk~-eeiFLdmFEDEy~~~ 49 (86)
-|...+..||++ ++++..+.++.+..+
T Consensus 44 vs~~t~Y~hF~~Ke~Ll~al~~~~~~~l 71 (198)
T 3cjd_A 44 CAVGAIYTHFQDLNALTLEVNGRTFARL 71 (198)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345567777775 888887777666655
No 101
>1q2h_A APS, adaptor protein with pleckstrin homology and SRC homology 2 domains; signal transduction, signaling protein; 1.70A {Homo sapiens} SCOP: a.34.4.1
Probab=20.17 E-value=51 Score=20.51 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.2
Q ss_pred hhHHHhhhHHHHHHh
Q psy13897 35 EDIFLDMFQFEYDQI 49 (86)
Q Consensus 35 eeiFLdmFEDEy~~~ 49 (86)
-|.|++-||.|++.-
T Consensus 50 ~~~F~~hF~~E~~r~ 64 (69)
T 1q2h_A 50 AANFLDVFGEEVRRV 64 (69)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 467999999998764
Done!