RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13897
         (86 letters)



>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score = 23.3 bits (49), Expect = 6.3
 Identities = 6/28 (21%), Positives = 14/28 (50%)

Query: 10 SDAHLAAIVNAKEESTSLLRNFYKSEDI 37
          S +H + I  +  E  + + +  + ED+
Sbjct: 21 SISHRSIIFGSLAEGETKVYDILRGEDV 48


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
           [TaxId: 10298]}
          Length = 615

 Score = 23.2 bits (50), Expect = 6.8
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 24  STSLLRNFYKSEDIFLDMFQFEYDQIQK 51
           + + +     +  I     QF Y+ IQ+
Sbjct: 378 ANASVERIKTTSSIEFARLQFTYNHIQR 405


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 296,074
Number of extensions: 11309
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 7
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)