BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13898
         (185 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2KHT3|CL16A_HUMAN Protein CLEC16A OS=Homo sapiens GN=CLEC16A PE=2 SV=2
          Length = 1053

 Score = 93.6 bits (231), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 8/83 (9%)

Query: 22  GFLQDIEVTGDKDDSKCLHVTIQKTNAGP------LTQAKFIFDDHIRCMAAKQRLNRGR 75
           G LQD++VTG +DDS+ L++TI K  + P      + QA FIF DHIRC+ AKQRL +GR
Sbjct: 753 GLLQDMQVTGVEDDSRALNITIHKPASSPHSKPFPILQATFIFSDHIRCIIAKQRLAKGR 812

Query: 76  TQARLAKMQQIAKLLDLPSSVQP 98
            QAR  KMQ+IA LLDLP  +QP
Sbjct: 813 IQARRMKMQRIAALLDLP--IQP 833


>sp|Q80U30|CL16A_MOUSE Protein CLEC16A OS=Mus musculus GN=Clec16a PE=2 SV=2
          Length = 1036

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 8/83 (9%)

Query: 22  GFLQDIEVTGDKDDSKCLHVTIQKTNAGP------LTQAKFIFDDHIRCMAAKQRLNRGR 75
           G LQD++VTG +DDS+ L++TI K  + P      + QA F+F DHIRC+ AKQRL +GR
Sbjct: 737 GLLQDMQVTGVEDDSRALNITIHKPASSPHSKPFPILQATFVFSDHIRCIIAKQRLAKGR 796

Query: 76  TQARLAKMQQIAKLLDLPSSVQP 98
            QAR  KMQ+IA LLDLP  +QP
Sbjct: 797 IQARRMKMQRIAALLDLP--IQP 817


>sp|P46578|GOP1_CAEEL Uncharacterized protein gop-1 OS=Caenorhabditis elegans GN=gop-1
           PE=2 SV=1
          Length = 892

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 19  RSTGFLQDIEVTGDKDDSKCLHVTIQKTNA-----GPLTQAKFIFDDHIRCMAAKQRLNR 73
           R  G LQD  + GD  DSK LHV ++   +      P+  AKFIFDDHIRCMAAKQRL +
Sbjct: 739 RFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRHPVLTAKFIFDDHIRCMAAKQRLTK 798

Query: 74  GRTQARLAKMQQIAKLLDLP 93
           GR  AR  K+Q I   L +P
Sbjct: 799 GRQTARGLKLQAICSALGVP 818


>sp|Q54GS1|CL16A_DICDI Protein CLEC16A homolog OS=Dictyostelium discoideum GN=DDB_G0289943
            PE=3 SV=1
          Length = 1550

 Score = 42.4 bits (98), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 24   LQDIEVTGDKDDSKCLHVTIQKTNAGPLTQAKFIFDDHIRCMAAKQRLNRGRTQARLAKM 83
            LQ +E+     D   L VT   T        + +FDD  +C  AKQ L R R   R  KM
Sbjct: 1153 LQRLEIETSHRDPSILRVTSHPTTWN----VEMVFDDSTQCSKAKQMLERVRDDVRATKM 1208

Query: 84   QQIAKLL 90
            +QI  LL
Sbjct: 1209 RQIYALL 1215


>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
           PE=1 SV=1
          Length = 435

 Score = 32.0 bits (71), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 103 PLYTLRGQINEWVTVANEYGL-KFSAEKSEVVVLKCEEQVEGAIVMNGTT-LKQVDHFKY 160
           P +TLR  I  W T+   YG+ +    K  +    C+ ++E  I  + ++ L QV   K 
Sbjct: 63  PNHTLRRLIQSWCTLNASYGIERIPTPKPPI----CKSEIEKLIKESSSSHLNQVKCLKR 118

Query: 161 LGSIISEDGT 170
           L  I+SE+ T
Sbjct: 119 LRQIVSENTT 128


>sp|P57428|FLGK_BUCAI Flagellar hook-associated protein 1 OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain APS) GN=flgK PE=3 SV=1
          Length = 543

 Score = 31.2 bits (69), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 33/77 (42%)

Query: 42  TIQKTNAGPLTQAKFIFDDHIRCMAAKQRLNRGRTQARLAKMQQIAKLLDLPSSVQPCPS 101
           T+Q  N     + K I+D++   +  ++R      Q    K++Q+ KL DL        S
Sbjct: 43  TVQNENKNSTVKVKEIYDNYNDFILEEKRKTNAEVQDEQTKIEQLLKLEDLLCEKSNIFS 102

Query: 102 PPLYTLRGQINEWVTVA 118
             L     QI E + +A
Sbjct: 103 QLLNDYYAQIEEDIVLA 119


>sp|P48795|PYRC_LACLE Dihydroorotase OS=Lactobacillus leichmannii GN=pyrC PE=3 SV=1
          Length = 427

 Score = 31.2 bits (69), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 113 EWVTVANEYGLKFSAEKSEVVVLKCEEQVE---GAIVMNGTTLKQVDHFKYLGSIISEDG 169
           E + +A EYG+  +AE +   +L  EE+++   G   MN     + D F  +  ++  DG
Sbjct: 238 ELIRIAKEYGINVTAEATPHHLLLSEEEIDGNNGYYKMNPPLRSKEDQFALIEGML--DG 295

Query: 170 TID 172
           TID
Sbjct: 296 TID 298


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,273,396
Number of Sequences: 539616
Number of extensions: 2300824
Number of successful extensions: 6089
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6066
Number of HSP's gapped (non-prelim): 18
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)