RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13898
         (185 letters)



>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat)
           retrotransposon and non-LTR retrovirus reverse
           transcriptase (RT). This subfamily contains both non-LTR
           retrotransposons and non-LTR retrovirus RTs. RTs
           catalyze the conversion of single-stranded RNA into
           double-stranded DNA for integration into host
           chromosomes. RT is a multifunctional enzyme with
           RNA-directed DNA polymerase, DNA directed DNA polymerase
           and ribonuclease hybrid (RNase H) activities.
          Length = 220

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 106 TLRGQINEWVTVANEYGLKFSAEKSEVVVLKCEEQVEGAIVMNGTTLKQVDHFKYLGSII 165
            L  ++ EW   + E GLK +  KS+V+++  +++    I +NGT ++ V+ FKYLG  I
Sbjct: 164 ELLQRLQEW---SKESGLKINPSKSKVMLIGNKKKRLKDITLNGTPIEAVETFKYLGVTI 220


>gnl|CDD|184154 PRK13573, PRK13573, anthranilate synthase component I; Provisional.
          Length = 503

 Score = 28.2 bits (63), Expect = 3.2
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 14/51 (27%)

Query: 63  RCMAAKQRLNRGRTQARLAKMQQIAKLLDLPSSVQPCPSPPLYTLRGQINE 113
           RC   + R+NR   +AR               + +P    PL +LR  I E
Sbjct: 74  RCRGQQARINR---EARFD-----------RDAFEPLEGHPLDSLRALIAE 110


>gnl|CDD|204365 pfam09981, DUF2218, Uncharacterized protein conserved in bacteria
          (DUF2218).  This domain, found in various hypothetical
          bacterial proteins, has no known function.
          Length = 89

 Score = 25.6 bits (57), Expect = 7.4
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 38 CLHVTIQKTNAGPLTQAKFIFDDHIRCMA 66
           L + ++  +A  L + + +  DH+   A
Sbjct: 51 ALTLRLEADDAEDLARLQQVVADHLERFA 79


>gnl|CDD|115305 pfam06635, NolV, Nodulation protein NolV.  This family consists
          of several nodulation protein NolV sequences from
          different Rhizobium species. The function of this
          family is unclear.
          Length = 207

 Score = 26.1 bits (57), Expect = 10.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 49 GPLTQAKF--IFDDHIR-CMAAKQRLNRGRTQARLAKMQQIAK 88
          GPL  A    I+DD  + C AA++ L   R  AR A  +++A+
Sbjct: 18 GPLIPAAELEIWDDAAKACAAAERHLQHVRGWARAAYERELAQ 60


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,967,869
Number of extensions: 789724
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 646
Number of HSP's successfully gapped: 8
Length of query: 185
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 94
Effective length of database: 6,901,388
Effective search space: 648730472
Effective search space used: 648730472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.4 bits)