RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13898
         (185 letters)



>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8)
           {Common sunflower (Helianthus annuus) [TaxId: 4232]}
          Length = 103

 Score = 28.3 bits (63), Expect = 0.24
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 59  DDHIRCMAAKQRLNRGRTQARLAKMQQIAKLLDLPS----SVQPCP 100
           D+   C A    LN         ++  +A   +LP       QPC 
Sbjct: 59  DEKCMCPAIMMMLNEPMWIRMRDQVMSMAH--NLPIECNLMSQPCQ 102


>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 66

 Score = 24.4 bits (53), Expect = 2.8
 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 51 LTQAKFIFDDHIRCMAAKQRLNRGRTQARLAKMQQIAKLLDLP 93
          ++Q++      +        + + +    L    +IA  L+ P
Sbjct: 15 ISQSELAALLEV-SRQTINGIEKNKYNPSLQLALKIAYYLNTP 56


>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller
          protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
          Length = 69

 Score = 23.9 bits (52), Expect = 4.9
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 51 LTQAKFIFDDHIRCMAAKQRLNRGRTQARLAKMQQIAKLLDLP 93
          L+Q            +    + RG+    L  + ++A  LD+ 
Sbjct: 23 LSQETL-AFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIE 64


>d1m1fa_ b.34.6.2 (A:) Kid toxin protein (ParD) {Plasmid R1, from
           Escherichia coli [TaxId: 2482]}
          Length = 110

 Score = 24.2 bits (52), Expect = 5.6
 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 4/79 (5%)

Query: 15  IQDDRSTGFLQDIEV---TGDKDDSKCLHVTIQKTNAGPLTQAKFIFDDHIRCMAAKQRL 71
           +         +   V   T   + ++     +     G  T      D   R +  K R 
Sbjct: 28  VTPAAFNRVTRLPVVVPVTSGGNFARTAGFAVSLDGVGIRTTGVVRCD-QPRTIDMKARG 86

Query: 72  NRGRTQARLAKMQQIAKLL 90
            +   +     M ++   L
Sbjct: 87  GKRLERVPETIMNEVLGRL 105


>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 219

 Score = 24.7 bits (54), Expect = 7.4
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 34 DDSKCLHVTIQKTNAG-----PLTQAKFIFDD----------HIRCMAAKQRLNRGRTQA 78
          DD+    VTI KT  G     P+  A FIF+           H    A ++RL +    A
Sbjct: 11 DDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQ---LA 67

Query: 79 RLAKMQQIAKLL-DLPSSVQP 98
          +    +++A L+  LP   QP
Sbjct: 68 KWKTAEEVAALIRSLPVEEQP 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,215
Number of extensions: 26958
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 9
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)