BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13901
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 84 GNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHS-SGDILSF-----SQPIGDADF 137
G+ + LDPA F LP +L DA FV V+H+ S I+ + SQ +G DF
Sbjct: 169 GHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDF 228
Query: 138 YPNGGNAPQPKC-----SSVPDI 155
+PNGG P C S++ DI
Sbjct: 229 FPNGGK-EMPGCQKNILSTIVDI 250
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 26 GNTPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHS-SGDILSF-----SQPIGDADF 79
G+ + LDPA F LP +L DA FV V+H+ S I+ + SQ +G DF
Sbjct: 169 GHVGRITGLDPAEPCFQGLPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDF 228
Query: 80 YPNGG 84
+PNGG
Sbjct: 229 FPNGG 233
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD----ILSF--SQPIGDADFYPNGGNAP 145
LDPAG F P +L DA FV V+H+ L F SQ +G DF+PNGG
Sbjct: 179 LDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGK-E 237
Query: 146 QPKC-----SSVPDI 155
P C S++ DI
Sbjct: 238 MPGCKKNVLSTITDI 252
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD----ILSF--SQPIGDADFYPNGGN 85
LDPAG F P +L DA FV V+H+ L F SQ +G DF+PNGG
Sbjct: 179 LDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGK 236
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD----ILSF--SQPIGDADFYPNGGNAP 145
LDPAG F P +L DA FV V+H+ L F SQ +G DF+PNGG
Sbjct: 177 LDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGK-E 235
Query: 146 QPKC-----SSVPDI 155
P C S++ DI
Sbjct: 236 MPGCKKNVLSTITDI 250
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD----ILSF--SQPIGDADFYPNGGN 85
LDPAG F P +L DA FV V+H+ L F SQ +G DF+PNGG
Sbjct: 177 LDPAGPCFQDEPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGK 234
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDI--------LSFSQPIGDADFYPNGGN 143
LDPA F P +L DA+FV V+H+ DI SQ +G DF+PNGG
Sbjct: 177 LDPAEPYFQDTPEEVRLDPSDAKFVDVIHT--DISPILPSLGFGMSQKVGHMDFFPNGGK 234
Query: 144 APQPKCSS 151
P C +
Sbjct: 235 -DMPGCKT 241
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDI--------LSFSQPIGDADFYPNGG 84
LDPA F P +L DA+FV V+H+ DI SQ +G DF+PNGG
Sbjct: 177 LDPAEPYFQDTPEEVRLDPSDAKFVDVIHT--DISPILPSLGFGMSQKVGHMDFFPNGG 233
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHS-SGDILSF-----SQPIGDADFYPNGGNAP 145
LDP F P +L DA FV V+H+ + ++ F +Q +G DF+PNGG +
Sbjct: 201 LDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGES- 259
Query: 146 QPKC 149
P C
Sbjct: 260 MPGC 263
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 25 GGNTP---QPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHS-SGDILSF-----SQPIG 75
G TP + LDP F P +L DA FV V+H+ + ++ F +Q +G
Sbjct: 189 GSKTPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMG 248
Query: 76 DADFYPNGGNA 86
DF+PNGG +
Sbjct: 249 HLDFFPNGGES 259
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 84 GNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADF 137
G + LDPA F P +L DA+FV V+H+ G + SQ +G DF
Sbjct: 168 GTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDF 227
Query: 138 YPNGGNAPQPKC 149
+PNGG P C
Sbjct: 228 FPNGG-VEMPGC 238
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 26 GNTPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADF 79
G + LDPA F P +L DA+FV V+H+ G + SQ +G DF
Sbjct: 168 GTIGRITGLDPAEPCFQGTPELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDF 227
Query: 80 YPNGG 84
+PNGG
Sbjct: 228 FPNGG 232
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 61 VHSSGDILSFSQPIGDADFYPNGGNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVH 120
VH G L S G+A NG + LDPA F P +L DA+FV V+H
Sbjct: 147 VHVIGHSLG-SHAAGEAGRRTNG-TIERITGLDPAEPCFQGTPELVRLDPSDAKFVDVIH 204
Query: 121 SSGDIL------SFSQPIGDADFYPNGGNAPQPKC 149
+ + SQ +G DF+PNGG P C
Sbjct: 205 TDAAPIIPNLGFGMSQTVGHLDFFPNGGKQ-MPGC 238
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 3 VHSSGDILSFSQPIGDADFYPNGGNTPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVH 62
VH G L S G+A NG + LDPA F P +L DA+FV V+H
Sbjct: 147 VHVIGHSLG-SHAAGEAGRRTNG-TIERITGLDPAEPCFQGTPELVRLDPSDAKFVDVIH 204
Query: 63 SSGDIL------SFSQPIGDADFYPNGG 84
+ + SQ +G DF+PNGG
Sbjct: 205 TDAAPIIPNLGFGMSQTVGHLDFFPNGG 232
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 61 VHSSGDILSFSQPIGDADFYPNGGNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVH 120
VH G L S G+A NG + LDPA F P +L DA+FV V+H
Sbjct: 147 VHIIGHSLG-SHAAGEAGRRTNGA-VGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIH 204
Query: 121 SSGDILSF--------SQPIGDADFYPNGGNAPQPKC 149
+ DI F SQ G DF+PNGG P C
Sbjct: 205 T--DIAPFIPNLGFGMSQTAGHLDFFPNGGK-EMPGC 238
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 3 VHSSGDILSFSQPIGDADFYPNGGNTPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVH 62
VH G L S G+A NG + LDPA F P +L DA+FV V+H
Sbjct: 147 VHIIGHSLG-SHAAGEAGRRTNGA-VGRITGLDPAEPCFQGTPELVRLDPSDAQFVDVIH 204
Query: 63 SSGDILSF--------SQPIGDADFYPNGG 84
+ DI F SQ G DF+PNGG
Sbjct: 205 T--DIAPFIPNLGFGMSQTAGHLDFFPNGG 232
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD----ILSF--SQPIGDADFYPNGGNAP 145
LDP F P +L DA FV V+H+ L F SQ +G DF+PNGG
Sbjct: 176 LDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGE-E 234
Query: 146 QPKC 149
P C
Sbjct: 235 MPGC 238
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD----ILSF--SQPIGDADFYPNGG 84
LDP F P +L DA FV V+H+ L F SQ +G DF+PNGG
Sbjct: 176 LDPVEASFQGTPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGG 232
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 84 GNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADF 137
G + LDPA F +L DA+FV V+H+ + SQ +G DF
Sbjct: 169 GRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDF 228
Query: 138 YPNGGNAPQPKC 149
+PNGG P C
Sbjct: 229 FPNGGK-QMPGC 239
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 26 GNTPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADF 79
G + LDPA F +L DA+FV V+H+ + SQ +G DF
Sbjct: 169 GRVGRVTGLDPAEPCFQDASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDF 228
Query: 80 YPNGGN 85
+PNGG
Sbjct: 229 FPNGGK 234
>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|B Chain B, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|C Chain C, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|D Chain D, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
Length = 360
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 50 LTADDARFV-MVVHSSGDILSFSQP---------IGDADFYPNGGNAPQPKSLDPAGVRF 99
L A D + V VV + GD+ +F+Q IG+ ++ G N P P+S GV
Sbjct: 228 LKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIPIPRS--EWGVGM 285
Query: 100 GHLPPHEKLT 109
GH H LT
Sbjct: 286 GHKHIHGGLT 295
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 2 VVHSSGDILSFSQP---------IGDADFYPNGGNTPQPKSLDPAGVRFGHLPPHEKLT 51
VV + GD+ +F+Q IG+ ++ G N P P+S GV GH H LT
Sbjct: 239 VVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIPIPRS--EWGVGMGHKHIHGGLT 295
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 52 ADDARFVMVVHSSGDILSFSQPIGDADFYPNGGNAPQPKSLDPAGVRF------------ 99
+D + ++ + GD++ Q + + Y +G P P+ ++P ++F
Sbjct: 207 SDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLK 266
Query: 100 --GHLPPHEKLTAD 111
H+ P E+LT +
Sbjct: 267 GCLHMDPTERLTCE 280
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 1 MVVHSSGDILSFSQPIGDADFYPNGGNTPQPKSLDPAGVRF--------------GHLPP 46
++ + GD++ Q + + Y +G P P+ ++P ++F H+ P
Sbjct: 214 LIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDP 273
Query: 47 HEKLTAD 53
E+LT +
Sbjct: 274 TERLTCE 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,025,772
Number of Sequences: 62578
Number of extensions: 269029
Number of successful extensions: 360
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 37
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)