RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13901
(157 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 83.8 bits (208), Expect = 3e-20
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILSFSQPIGDADFYPNGGNAPQPKC 149
LDPAG F P ++L DA+FV V+H+ G +L FSQPIG ADFYPNGG QP C
Sbjct: 143 LDPAGPLFSGADPEDRLDPSDAQFVDVIHTDGGLLGFSQPIGHADFYPNGG-RDQPGC 199
Score = 80.4 bits (199), Expect = 6e-19
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILSFSQPIGDADFYPNGGNAPQP 89
LDPAG F P ++L DA+FV V+H+ G +L FSQPIG ADFYPNGG QP
Sbjct: 143 LDPAGPLFSGADPEDRLDPSDAQFVDVIHTDGGLLGFSQPIGHADFYPNGG-RDQP 197
Score = 51.1 bits (123), Expect = 3e-08
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 2 VVHSSGDILSFSQPIGDADFYPNGGNTPQP 31
V+H+ G +L FSQPIG ADFYPNGG QP
Sbjct: 169 VIHTDGGLLGFSQPIGHADFYPNGG-RDQP 197
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 58.2 bits (141), Expect = 9e-11
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD---ILSF--SQPIGDADFYPNGGNAPQ 146
LDPAG F P +L DA FV +H+ L SQ +G DF+PNGG+ Q
Sbjct: 181 LDPAGPYFKGTPELTRLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSE-Q 239
Query: 147 PKC 149
P C
Sbjct: 240 PGC 242
Score = 55.9 bits (135), Expect = 6e-10
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVHSSGD---ILSF--SQPIGDADFYPNGGNAPQ 88
LDPAG F P +L DA FV +H+ L SQ +G DF+PNGG+ Q
Sbjct: 181 LDPAGPYFKGTPELTRLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSE-Q 239
Query: 89 P 89
P
Sbjct: 240 P 240
Score = 34.3 bits (79), Expect = 0.015
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 2 VVHSSGD---ILSF--SQPIGDADFYPNGGNTPQP 31
+H+ L SQ +G DF+PNGG+ QP
Sbjct: 207 AIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSE-QP 240
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 49.1 bits (117), Expect = 2e-07
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 92 LDPAGVRFGHLPPHEKLTADDARFVMVVH-----SSGDILSFSQPIGDADFYPNGGNAPQ 146
LDPAG F + L+ DDA FV V+H S + +P+G D YPNGG Q
Sbjct: 150 LDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGGTF-Q 208
Query: 147 PKC 149
P C
Sbjct: 209 PGC 211
Score = 46.4 bits (110), Expect = 1e-06
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 34 LDPAGVRFGHLPPHEKLTADDARFVMVVH-----SSGDILSFSQPIGDADFYPNGG 84
LDPAG F + L+ DDA FV V+H S + +P+G D YPNGG
Sbjct: 150 LDPAGPTFEYADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGG 205
Score = 27.2 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 5 SSGDILSFSQPIGDADFYPNGGNTPQP 31
S + +P+G D YPNGG T QP
Sbjct: 184 SPDRSIGIQRPVGHIDIYPNGG-TFQP 209
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 40.9 bits (96), Expect = 4e-05
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 91 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADFYPNGGNA 144
+ P V ++L DA FV + + DI+ P G A+FY NGG +
Sbjct: 62 TFGPPRVGNAAFAE-DRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKS 120
Query: 145 PQPKC 149
C
Sbjct: 121 QPGCC 125
Score = 39.8 bits (93), Expect = 1e-04
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 33 SLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDIL------SFSQPIGDADFYPNGGNA 86
+ P V ++L DA FV + + DI+ P G A+FY NGG +
Sbjct: 62 TFGPPRVGNAAFAE-DRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKS 120
Query: 87 PQP 89
Sbjct: 121 QPG 123
Score = 26.7 bits (59), Expect = 4.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 2 VVHSSGDIL------SFSQPIGDADFYPNGGNTPQP 31
+ + DI+ P G A+FY NGG +
Sbjct: 88 RIVNDNDIVPRLPPGGEGYPHGGAEFYINGGKSQPG 123
>gnl|CDD|227658 COG5360, COG5360, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 566
Score = 29.0 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 75 GDADFYPNGGNAPQPKSLDPAGVRFGHLPPHEKLTADDARFVMVVHSSGDILSFSQPIGD 134
G G+ DPA VRF HL P +L+ DD + V + GD FS
Sbjct: 466 GRDRLSRLDGDPKAANGRDPAAVRF-HLHPDIRLSQDDEKSVYLTAPDGDTWLFSCDEVA 524
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional.
Length = 456
Score = 26.8 bits (59), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 44 LPPHEKLTADDARFVMVVHSSGDIL 68
L P ++TAD + FV++ H GD
Sbjct: 258 LMPWTRVTADTSPFVLIFHELGDTF 282
Score = 26.8 bits (59), Expect = 5.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 102 LPPHEKLTADDARFVMVVHSSGDIL 126
L P ++TAD + FV++ H GD
Sbjct: 258 LMPWTRVTADTSPFVLIFHELGDTF 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.139 0.432
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,411,286
Number of extensions: 765598
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 22
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)